Query 043924
Match_columns 167
No_of_seqs 305 out of 1870
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 16:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 7.5E-25 2.6E-29 170.0 10.2 140 19-166 2-167 (313)
2 3rgz_A Protein brassinosteroid 99.9 4E-23 1.4E-27 177.1 11.5 141 15-165 4-168 (768)
3 4eco_A Uncharacterized protein 99.9 2E-21 7E-26 163.5 10.5 80 18-106 25-115 (636)
4 4ecn_A Leucine-rich repeat pro 99.8 7E-21 2.4E-25 165.2 8.5 82 16-108 262-360 (876)
5 4fcg_A Uncharacterized protein 99.8 2.7E-20 9.3E-25 145.3 1.6 138 17-166 21-168 (328)
6 1w8a_A SLIT protein; signaling 99.6 7.9E-16 2.7E-20 111.3 8.8 105 53-165 6-119 (192)
7 3e6j_A Variable lymphocyte rec 99.6 1.4E-15 4.6E-20 112.9 10.1 110 44-161 11-148 (229)
8 3rgz_A Protein brassinosteroid 99.6 7E-16 2.4E-20 132.2 7.6 91 67-166 632-722 (768)
9 3g39_A Variable lymphocyte rec 99.6 3.1E-15 1E-19 106.3 8.8 103 54-165 8-119 (170)
10 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 103.8 9.6 100 53-161 5-113 (177)
11 2o6s_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 104.8 9.8 106 53-162 5-138 (208)
12 2v9t_B SLIT homolog 2 protein 99.5 2.8E-14 9.5E-19 105.2 9.9 105 53-162 9-142 (220)
13 2v70_A SLIT-2, SLIT homolog 2 99.5 3.2E-14 1.1E-18 104.9 9.9 109 53-165 9-146 (220)
14 2wfh_A SLIT homolog 2 protein 99.5 3.7E-14 1.3E-18 102.7 9.6 99 54-162 9-116 (193)
15 1w8a_A SLIT protein; signaling 99.5 2.6E-14 8.8E-19 103.3 8.4 91 66-165 53-143 (192)
16 4g8a_A TOLL-like receptor 4; l 99.5 8.9E-14 3E-18 115.4 10.6 101 53-162 25-138 (635)
17 3m19_A Variable lymphocyte rec 99.5 8.7E-14 3E-18 104.2 8.9 91 67-162 35-145 (251)
18 2z81_A CD282 antigen, TOLL-lik 99.5 1.3E-13 4.5E-18 113.2 10.2 100 53-162 2-112 (549)
19 2r9u_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 97.8 9.0 99 56-163 13-120 (174)
20 2ifg_A High affinity nerve gro 99.5 1.3E-13 4.5E-18 107.5 9.2 98 55-162 8-117 (347)
21 2o6q_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 104.8 8.2 64 94-161 83-146 (270)
22 3v47_A TOLL-like receptor 5B a 99.5 6.6E-14 2.3E-18 112.6 7.1 110 53-166 6-147 (455)
23 2v70_A SLIT-2, SLIT homolog 2 99.5 1.6E-13 5.4E-18 101.2 8.4 89 68-165 82-170 (220)
24 2z80_A TOLL-like receptor 2, v 99.4 3.8E-13 1.3E-17 105.2 10.1 103 53-166 28-141 (353)
25 4fcg_A Uncharacterized protein 99.4 1.9E-13 6.6E-18 106.4 7.4 72 91-166 224-295 (328)
26 1ogq_A PGIP-2, polygalacturona 99.4 9.8E-14 3.4E-18 107.3 4.2 74 89-166 118-192 (313)
27 2o6r_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 94.8 7.5 91 66-165 51-141 (177)
28 2v9t_B SLIT homolog 2 protein 99.4 1.1E-12 3.7E-17 96.7 8.8 87 68-163 81-167 (220)
29 2wfh_A SLIT homolog 2 protein 99.4 1.8E-12 6.1E-17 93.8 8.7 89 66-163 53-141 (193)
30 2xwt_C Thyrotropin receptor; s 99.4 7.9E-13 2.7E-17 98.1 6.9 96 60-165 18-121 (239)
31 2id5_A Lingo-1, leucine rich r 99.4 2.2E-12 7.7E-17 104.5 10.0 100 57-165 13-121 (477)
32 2je0_A Acidic leucine-rich nuc 99.4 9.8E-13 3.3E-17 90.8 6.8 88 66-164 41-129 (149)
33 3vq2_A TLR4, TOLL-like recepto 99.4 2E-12 6.7E-17 107.5 9.9 100 53-161 5-117 (606)
34 2xot_A Amphoterin-induced prot 99.4 2E-12 6.8E-17 101.8 9.3 104 54-161 17-149 (361)
35 2o6s_A Variable lymphocyte rec 99.4 2.5E-12 8.6E-17 93.5 9.1 90 67-165 76-165 (208)
36 3g39_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 90.1 9.2 84 70-165 12-95 (170)
37 2ifg_A High affinity nerve gro 99.3 3.4E-12 1.2E-16 99.5 9.3 84 71-166 12-97 (347)
38 3e6j_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 94.1 9.2 89 67-165 88-176 (229)
39 1dce_A Protein (RAB geranylger 99.3 2.5E-12 8.4E-17 107.2 8.9 88 66-165 462-550 (567)
40 3rfs_A Internalin B, repeat mo 99.3 3.7E-12 1.3E-16 96.4 9.2 70 92-165 153-222 (272)
41 3m19_A Variable lymphocyte rec 99.3 4.6E-12 1.6E-16 94.7 9.2 66 92-161 103-168 (251)
42 2je0_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 88.1 7.8 85 66-162 16-102 (149)
43 2r9u_A Variable lymphocyte rec 99.3 6.3E-12 2.2E-16 89.5 9.2 82 70-163 15-96 (174)
44 2z62_A TOLL-like receptor 4, v 99.3 8.8E-12 3E-16 94.2 10.1 92 67-162 28-138 (276)
45 3zyi_A Leucine-rich repeat-con 99.3 8.1E-12 2.8E-16 100.8 10.2 97 57-162 56-161 (452)
46 4b8c_D Glucose-repressible alc 99.3 5.3E-13 1.8E-17 114.1 2.9 66 94-166 245-310 (727)
47 3v47_A TOLL-like receptor 5B a 99.3 5.2E-12 1.8E-16 101.5 8.6 72 90-165 341-412 (455)
48 3rfs_A Internalin B, repeat mo 99.3 9.6E-12 3.3E-16 94.1 9.1 70 92-165 129-198 (272)
49 1ozn_A Reticulon 4 receptor; N 99.3 1.9E-11 6.5E-16 92.8 10.5 92 67-162 32-143 (285)
50 4g8a_A TOLL-like receptor 4; l 99.3 6.4E-12 2.2E-16 104.2 8.3 74 89-166 487-560 (635)
51 2ell_A Acidic leucine-rich nuc 99.3 4.6E-12 1.6E-16 89.1 6.3 86 67-163 49-135 (168)
52 2z66_A Variable lymphocyte rec 99.3 3.7E-12 1.3E-16 97.6 6.3 104 53-165 5-143 (306)
53 3t6q_A CD180 antigen; protein- 99.3 8E-12 2.7E-16 103.9 8.8 96 58-162 15-119 (606)
54 2xot_A Amphoterin-induced prot 99.3 8.1E-12 2.8E-16 98.3 8.2 88 68-165 89-179 (361)
55 3j0a_A TOLL-like receptor 5; m 99.3 3.9E-12 1.3E-16 110.0 6.7 103 56-164 15-139 (844)
56 1p9a_G Platelet glycoprotein I 99.3 1.8E-11 6.1E-16 93.7 9.2 70 91-165 119-188 (290)
57 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.6E-17 111.5 3.1 94 67-166 224-334 (727)
58 1p9a_G Platelet glycoprotein I 99.3 2E-11 6.8E-16 93.4 9.3 90 66-166 76-165 (290)
59 3zyj_A Leucine-rich repeat-con 99.3 2.5E-11 8.5E-16 97.6 10.2 97 57-162 45-150 (440)
60 4ezg_A Putative uncharacterize 99.3 1.4E-11 4.7E-16 89.0 7.9 81 68-159 67-147 (197)
61 3oja_B Anopheles plasmodium-re 99.3 1.1E-11 3.6E-16 103.6 8.2 71 91-165 94-164 (597)
62 1dce_A Protein (RAB geranylger 99.3 9.3E-12 3.2E-16 103.7 7.6 85 68-166 442-527 (567)
63 2ell_A Acidic leucine-rich nuc 99.3 7.8E-12 2.7E-16 87.9 5.9 90 67-166 71-164 (168)
64 1ozn_A Reticulon 4 receptor; N 99.2 2.2E-11 7.6E-16 92.4 8.8 70 91-164 172-241 (285)
65 3o6n_A APL1; leucine-rich repe 99.2 6.7E-12 2.3E-16 99.3 5.5 72 90-165 87-158 (390)
66 4eco_A Uncharacterized protein 99.2 9E-12 3.1E-16 104.8 6.4 96 66-166 205-322 (636)
67 2z66_A Variable lymphocyte rec 99.2 2.7E-11 9.2E-16 92.8 8.3 71 91-165 170-240 (306)
68 1a9n_A U2A', U2A'; complex (nu 99.2 2.8E-11 9.5E-16 85.9 7.5 85 68-165 43-129 (176)
69 1a9n_A U2A', U2A'; complex (nu 99.2 4.4E-11 1.5E-15 84.8 8.3 86 66-165 18-104 (176)
70 1ziw_A TOLL-like receptor 3; i 99.2 2.2E-11 7.6E-16 102.5 7.6 97 66-166 24-139 (680)
71 1xku_A Decorin; proteoglycan, 99.2 4.8E-11 1.6E-15 92.3 9.0 100 53-161 29-158 (330)
72 4ay9_X Follicle-stimulating ho 99.2 1.7E-11 5.9E-16 95.9 6.5 101 55-163 9-119 (350)
73 3vq2_A TLR4, TOLL-like recepto 99.2 5.5E-11 1.9E-15 98.8 9.7 90 68-166 81-171 (606)
74 2o6q_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 89.4 9.1 86 68-162 38-123 (270)
75 2ft3_A Biglycan; proteoglycan, 99.2 6.5E-11 2.2E-15 91.8 9.1 100 53-161 31-160 (332)
76 2z62_A TOLL-like receptor 4, v 99.2 4.6E-11 1.6E-15 90.2 8.0 90 67-165 76-166 (276)
77 2z7x_B TOLL-like receptor 1, v 99.2 2.8E-11 9.5E-16 98.9 6.1 63 92-161 65-128 (520)
78 2z63_A TOLL-like receptor 4, v 99.2 6.4E-11 2.2E-15 97.5 7.9 73 90-166 464-536 (570)
79 4ezg_A Putative uncharacterize 99.2 6.4E-11 2.2E-15 85.4 6.9 87 66-162 87-173 (197)
80 3zyj_A Leucine-rich repeat-con 99.2 1E-10 3.5E-15 94.1 8.7 67 92-162 203-269 (440)
81 3t6q_A CD180 antigen; protein- 99.2 9.4E-11 3.2E-15 97.4 8.7 88 66-162 56-143 (606)
82 4ecn_A Leucine-rich repeat pro 99.2 2.8E-11 9.7E-16 105.2 5.7 96 66-166 447-565 (876)
83 3oja_A Leucine-rich immune mol 99.2 1E-10 3.5E-15 95.6 8.7 103 56-166 110-231 (487)
84 3zyi_A Leucine-rich repeat-con 99.1 1.1E-10 3.7E-15 94.2 8.7 67 92-162 214-280 (452)
85 2z63_A TOLL-like receptor 4, v 99.1 1.7E-10 5.9E-15 94.9 10.0 71 91-165 71-142 (570)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 7.7E-11 2.6E-15 97.5 7.9 84 67-162 52-135 (562)
87 2z81_A CD282 antigen, TOLL-lik 99.1 3.4E-11 1.2E-15 98.9 5.7 91 66-165 49-140 (549)
88 3o6n_A APL1; leucine-rich repe 99.1 1.4E-10 4.6E-15 91.7 8.6 66 92-161 113-178 (390)
89 2z7x_B TOLL-like receptor 1, v 99.1 7.3E-11 2.5E-15 96.4 7.1 88 67-166 21-109 (520)
90 1wwl_A Monocyte differentiatio 99.1 8.9E-11 3E-15 90.4 7.1 92 67-165 149-245 (312)
91 2id5_A Lingo-1, leucine rich r 99.1 1.2E-10 4.1E-15 94.3 8.1 66 92-161 100-165 (477)
92 1xku_A Decorin; proteoglycan, 99.1 1.6E-10 5.4E-15 89.4 7.9 85 68-162 193-277 (330)
93 3oja_B Anopheles plasmodium-re 99.1 1.8E-10 6E-15 96.2 8.7 92 67-162 75-185 (597)
94 1wwl_A Monocyte differentiatio 99.1 1.4E-11 4.6E-16 95.0 1.5 62 96-161 149-214 (312)
95 1ziw_A TOLL-like receptor 3; i 99.1 1.9E-10 6.5E-15 96.8 7.8 87 68-163 74-160 (680)
96 3cvr_A Invasion plasmid antige 99.1 5.6E-11 1.9E-15 99.0 3.8 103 43-162 34-154 (571)
97 2ft3_A Biglycan; proteoglycan, 99.1 1.3E-10 4.5E-15 90.0 5.7 86 68-163 194-279 (332)
98 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 3.1E-10 1.1E-14 93.8 8.2 84 70-166 34-117 (562)
99 3j0a_A TOLL-like receptor 5; m 99.1 2.6E-10 9E-15 98.6 7.5 93 67-166 73-166 (844)
100 4fmz_A Internalin; leucine ric 99.0 7E-10 2.4E-14 86.1 8.6 68 92-165 261-328 (347)
101 4glp_A Monocyte differentiatio 99.0 2.2E-10 7.5E-15 88.1 5.4 92 67-165 145-241 (310)
102 2z80_A TOLL-like receptor 2, v 99.0 4E-10 1.4E-14 88.0 5.7 82 67-158 76-159 (353)
103 3oja_A Leucine-rich immune mol 99.0 5.3E-10 1.8E-14 91.3 6.6 67 93-163 117-184 (487)
104 1h6t_A Internalin B; cell adhe 99.0 1.4E-09 5E-14 83.0 8.3 62 92-161 130-191 (291)
105 4fmz_A Internalin; leucine ric 99.0 6.4E-10 2.2E-14 86.3 6.3 65 91-161 282-346 (347)
106 4glp_A Monocyte differentiatio 99.0 2.4E-10 8.1E-15 87.9 3.8 87 69-160 93-181 (310)
107 3o53_A Protein LRIM1, AGAP0063 99.0 1.8E-09 6E-14 83.3 8.6 60 95-161 168-227 (317)
108 2xwt_C Thyrotropin receptor; s 99.0 2.6E-10 9E-15 84.4 3.8 34 128-161 134-169 (239)
109 1h6t_A Internalin B; cell adhe 98.9 2.4E-09 8.2E-14 81.8 8.1 64 92-163 108-171 (291)
110 3o53_A Protein LRIM1, AGAP0063 98.9 2.8E-09 9.7E-14 82.1 8.5 84 69-163 122-206 (317)
111 1h6u_A Internalin H; cell adhe 98.9 3.9E-09 1.3E-13 81.2 8.8 61 93-161 104-164 (308)
112 1xeu_A Internalin C; cellular 98.9 1.7E-09 6E-14 81.5 6.5 79 67-161 85-163 (263)
113 1m9s_A Internalin B; cell inva 98.9 3.1E-09 1.1E-13 89.1 8.6 63 92-162 127-189 (605)
114 1xeu_A Internalin C; cellular 98.9 5E-09 1.7E-13 79.0 8.7 81 66-162 62-142 (263)
115 2ast_B S-phase kinase-associat 98.9 2E-09 6.8E-14 83.1 6.2 64 94-161 91-156 (336)
116 1h6u_A Internalin H; cell adhe 98.9 4.7E-09 1.6E-13 80.7 8.3 41 120-162 169-209 (308)
117 1m9s_A Internalin B; cell inva 98.9 4.5E-09 1.5E-13 88.1 8.1 67 91-165 104-170 (605)
118 2ast_B S-phase kinase-associat 98.9 2.4E-10 8.3E-15 88.3 0.3 98 53-165 35-135 (336)
119 1o6v_A Internalin A; bacterial 98.9 6.6E-09 2.2E-13 84.0 8.2 63 92-162 327-389 (466)
120 2ca6_A RAN GTPase-activating p 98.9 7E-10 2.4E-14 87.6 2.3 41 123-163 273-318 (386)
121 3rw6_A Nuclear RNA export fact 98.8 2.7E-09 9.3E-14 80.9 5.2 67 94-166 168-238 (267)
122 3bz5_A Internalin-J, INLJ; leu 98.8 7.9E-09 2.7E-13 83.8 8.1 78 67-162 64-141 (457)
123 1o6v_A Internalin A; bacterial 98.8 6.6E-09 2.2E-13 84.0 7.6 66 92-165 305-370 (466)
124 1ds9_A Outer arm dynein; leuci 98.8 2.7E-11 9.3E-16 87.5 -6.1 65 95-165 92-157 (198)
125 1jl5_A Outer protein YOPM; leu 98.8 1.2E-08 4.1E-13 82.7 8.3 61 92-162 149-209 (454)
126 2ca6_A RAN GTPase-activating p 98.8 1.7E-09 5.7E-14 85.4 2.6 92 67-162 187-288 (386)
127 3bz5_A Internalin-J, INLJ; leu 98.8 1.8E-08 6E-13 81.7 8.7 62 92-163 187-248 (457)
128 1ds9_A Outer arm dynein; leuci 98.8 9E-11 3.1E-15 84.7 -5.0 83 66-162 47-129 (198)
129 3cvr_A Invasion plasmid antige 98.8 6.5E-09 2.2E-13 86.7 5.5 62 96-166 180-248 (571)
130 1jl5_A Outer protein YOPM; leu 98.8 5.5E-09 1.9E-13 84.6 4.9 64 95-166 336-416 (454)
131 3g06_A SSPH2 (leucine-rich rep 98.8 1.2E-08 4.2E-13 85.8 6.8 62 95-165 240-301 (622)
132 3goz_A Leucine-rich repeat-con 98.7 2.7E-09 9.1E-14 83.7 1.4 90 68-162 52-152 (362)
133 3g06_A SSPH2 (leucine-rich rep 98.6 7.8E-09 2.7E-13 87.0 1.3 104 43-161 13-134 (622)
134 1z7x_W Ribonuclease inhibitor; 98.6 1.5E-08 5.1E-13 81.3 1.8 72 92-163 337-413 (461)
135 3rw6_A Nuclear RNA export fact 98.5 7.2E-08 2.5E-12 73.1 5.0 82 66-154 169-257 (267)
136 3goz_A Leucine-rich repeat-con 98.5 6.3E-08 2.2E-12 75.9 3.8 94 66-164 21-125 (362)
137 1z7x_W Ribonuclease inhibitor; 98.4 2.6E-08 8.9E-13 79.9 0.1 63 96-162 313-384 (461)
138 3un9_A NLR family member X1; l 98.4 6.1E-08 2.1E-12 76.7 1.9 65 93-161 180-252 (372)
139 3un9_A NLR family member X1; l 98.4 1.2E-07 4.3E-12 74.9 3.3 64 95-162 154-225 (372)
140 4ay9_X Follicle-stimulating ho 98.3 7.4E-07 2.5E-11 69.5 6.5 83 71-165 13-97 (350)
141 1io0_A Tropomodulin; LRR prote 98.2 6.2E-07 2.1E-11 64.0 2.7 90 67-161 65-164 (185)
142 3sb4_A Hypothetical leucine ri 98.2 2.5E-06 8.4E-11 65.9 6.3 84 67-161 226-310 (329)
143 1io0_A Tropomodulin; LRR prote 98.2 6.2E-07 2.1E-11 64.0 2.1 96 66-162 35-137 (185)
144 3ogk_B Coronatine-insensitive 98.0 2.7E-06 9.2E-11 70.2 3.6 66 94-163 461-528 (592)
145 3ogk_B Coronatine-insensitive 97.8 1.4E-05 4.9E-10 65.8 4.0 65 94-162 162-234 (592)
146 3rfe_A Platelet glycoprotein I 97.7 8.1E-05 2.8E-09 50.1 6.0 54 71-137 12-68 (130)
147 3e4g_A ATP synthase subunit S, 97.7 3E-05 1E-09 55.1 3.8 85 66-159 60-150 (176)
148 3sb4_A Hypothetical leucine ri 97.5 0.00015 5.2E-09 55.7 6.0 78 67-155 250-328 (329)
149 2ra8_A Uncharacterized protein 97.5 2.4E-05 8.1E-10 61.7 1.4 66 95-161 251-320 (362)
150 2p1m_B Transport inhibitor res 97.4 3.5E-05 1.2E-09 63.4 1.4 63 95-161 455-519 (594)
151 2p1m_B Transport inhibitor res 97.4 6.1E-05 2.1E-09 62.0 2.0 65 93-162 429-495 (594)
152 3rfe_A Platelet glycoprotein I 97.0 0.0016 5.4E-08 43.7 6.0 57 99-161 11-68 (130)
153 4fdw_A Leucine rich hypothetic 96.6 0.0059 2E-07 48.5 7.0 64 91-161 295-358 (401)
154 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0015 5E-08 47.1 2.9 14 96-109 98-111 (197)
155 3e4g_A ATP synthase subunit S, 96.5 0.0021 7.2E-08 45.5 3.4 62 96-161 61-128 (176)
156 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0039 1.3E-07 44.9 4.2 92 66-158 40-136 (197)
157 2ra8_A Uncharacterized protein 96.1 0.0048 1.6E-07 48.4 4.1 69 94-162 217-293 (362)
158 4fdw_A Leucine rich hypothetic 96.1 0.01 3.5E-07 47.1 5.8 66 89-158 264-333 (401)
159 4fs7_A Uncharacterized protein 93.6 0.1 3.6E-06 40.7 5.3 62 91-158 315-376 (394)
160 4gt6_A Cell surface protein; l 93.5 0.21 7.3E-06 38.9 7.0 64 90-159 305-368 (394)
161 4h09_A Hypothetical leucine ri 92.9 0.14 4.9E-06 39.6 5.1 62 91-157 281-342 (379)
162 4gt6_A Cell surface protein; l 90.8 0.29 9.8E-06 38.2 4.7 65 89-161 327-391 (394)
163 4h09_A Hypothetical leucine ri 90.8 0.58 2E-05 36.1 6.4 62 92-158 259-320 (379)
164 4fs7_A Uncharacterized protein 88.2 1 3.4E-05 35.0 6.0 62 91-158 292-353 (394)
165 3ox7_P MH027; urokinase-type p 37.6 7.6 0.00026 16.9 0.1 9 53-61 6-14 (23)
166 2lz0_A Uncharacterized protein 22.6 59 0.002 19.9 2.5 41 89-134 13-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=7.5e-25 Score=169.98 Aligned_cols=140 Identities=30% Similarity=0.502 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcc--eeeEEEeCCC--CCEEEEEcCCCCCCC---ccc-------
Q 043924 19 GCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQ--WERVECSNTT--GRVIQLDLSFIGNWD---LKE------- 84 (167)
Q Consensus 19 ~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~--w~gv~C~~~~--~~v~~L~L~~~~l~~---l~~------- 84 (167)
.|.++|++||++||+++.++. .+.+|..+. +||. |.||+|+... ++|+.|+++++.+.. +..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~---~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTT---DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTS---CTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCC---CCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 588999999999999996653 788998766 8998 9999998633 799999999998863 110
Q ss_pred ---------cc---cCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCE
Q 043924 85 ---------RY---LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTS 152 (167)
Q Consensus 85 ---------~~---l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~ 152 (167)
+. ..+..+..+++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|..+.++++|++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF----LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH----HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 00 11223555666666666666666666665 677777777777777777777777777777777
Q ss_pred EECcCCcceecCCC
Q 043924 153 LYLYSNRLEGNIDV 166 (167)
Q Consensus 153 L~L~~N~lsG~iP~ 166 (167)
|++++|+++|.+|.
T Consensus 154 L~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 154 ITFDGNRISGAIPD 167 (313)
T ss_dssp EECCSSCCEEECCG
T ss_pred EECcCCcccCcCCH
Confidence 77777777777664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4e-23 Score=177.07 Aligned_cols=141 Identities=27% Similarity=0.303 Sum_probs=102.2
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcceeeEEEeCCCCCEEEEEcCCCCCCCc----cc------
Q 043924 15 GGSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDEGATDCCQWERVECSNTTGRVIQLDLSFIGNWDL----KE------ 84 (167)
Q Consensus 15 ~~~~~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~C~~~~~~v~~L~L~~~~l~~l----~~------ 84 (167)
++++++.++|++||++||+++.++. .+++|..+. +||.|.||+|+ .++|+.|+|+++.+... ..
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~---~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNK---NPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTS---CGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCC---CCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccC
Confidence 3445557889999999999997665 899998766 99999999999 68999999999876531 10
Q ss_pred ------c---cc--CCccccCCCCccEEEcCCCceeeecCc--ccccccCCCCCCCEEeCcCCcCCchhhHhh-hcCCCC
Q 043924 85 ------R---YL--NASLFTPFQQLESLYLEYNNIAGCVEN--EGIERLSRLSNLKMLDLSENLFNNSILSSV-AHLSSL 150 (167)
Q Consensus 85 ------~---~l--~~~~~~~l~~L~~L~Ls~n~l~g~ip~--~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l-~~l~~L 150 (167)
+ .+ .+..+..+++|++|+|++|.++|.+|. . ++++++|++|++++|++++.+|..+ .++++|
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS----LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGG----GGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHH----HhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 0 00 014577788888888888888888887 5 7777777777777777776666554 566666
Q ss_pred CEEECcCCcceecCC
Q 043924 151 TSLYLYSNRLEGNID 165 (167)
Q Consensus 151 ~~L~L~~N~lsG~iP 165 (167)
++|++++|+++|.+|
T Consensus 154 ~~L~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 154 EVLDLSANSISGANV 168 (768)
T ss_dssp SEEECCSSCCEEETH
T ss_pred CEEECCCCccCCcCC
Confidence 666666666665543
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2e-21 Score=163.55 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHhcCC-CCCCC-------CCCCCCCCCCCCCcce---eeEEEeCCCCCEEEEEcCCCCCCCccccc
Q 043924 18 EGCLDQERFALLRLKLFFD-DPFNS-------LHHWVDDEGATDCCQW---ERVECSNTTGRVIQLDLSFIGNWDLKERY 86 (167)
Q Consensus 18 ~~~~~~~~~aL~~~k~~~~-~~~~~-------~~~W~~~~~~~~~c~w---~gv~C~~~~~~v~~L~L~~~~l~~l~~~~ 86 (167)
.+....|+.||.+++++++ +.+.. ..+|+.+. ++|.| .||+|+. .++|+.|+|+++++...
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~---~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~---- 96 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK---ELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGR---- 96 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS---CGGGTTCCTTEEECT-TCCEEEEECTTSCCEEE----
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC---CcccccCCCCeEEcC-CCCEEEEEecCcccCCc----
Confidence 3344579999999999983 32222 23798876 99999 9999986 58999999999987521
Q ss_pred cCCccccCCCCccEEEcCCC
Q 043924 87 LNASLFTPFQQLESLYLEYN 106 (167)
Q Consensus 87 l~~~~~~~l~~L~~L~Ls~n 106 (167)
+ ++.++++++|++|+|++|
T Consensus 97 l-p~~l~~L~~L~~L~Ls~N 115 (636)
T 4eco_A 97 V-PDAIGQLTELEVLALGSH 115 (636)
T ss_dssp E-CGGGGGCTTCCEEESCCG
T ss_pred C-ChHHhcCccceEEECcCC
Confidence 1 234556666666666555
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=7e-21 Score=165.15 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCC----CCCCCcce------------eeEEEeCCCCCEEEEEcCCCCC
Q 043924 16 GSEGCLDQERFALLRLKLFFDDPFNSLHHWVDDE----GATDCCQW------------ERVECSNTTGRVIQLDLSFIGN 79 (167)
Q Consensus 16 ~~~~~~~~~~~aL~~~k~~~~~~~~~~~~W~~~~----~~~~~c~w------------~gv~C~~~~~~v~~L~L~~~~l 79 (167)
.++++..+|+.||++||+++.++ +|+.+. ..+++|.| .||+|+. .++|+.|+|+++++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 34455678999999999999544 676532 22234999 9999997 68999999999987
Q ss_pred CCccccccCCccccCCCCccEEEc-CCCce
Q 043924 80 WDLKERYLNASLFTPFQQLESLYL-EYNNI 108 (167)
Q Consensus 80 ~~l~~~~l~~~~~~~l~~L~~L~L-s~n~l 108 (167)
... + ++.+++|++|++|+| ++|.+
T Consensus 336 ~G~----i-p~~l~~L~~L~~LdLss~N~l 360 (876)
T 4ecn_A 336 KGR----V-PDAIGQLTELKVLSFGTHSET 360 (876)
T ss_dssp EEE----E-CGGGGGCTTCCEEESCCTTHH
T ss_pred CCc----C-chHHhccccceEeeecccccc
Confidence 411 0 233445555555555 44433
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=2.7e-20 Score=145.25 Aligned_cols=138 Identities=12% Similarity=0.146 Sum_probs=111.2
Q ss_pred CCCCCHHHHHHHHHHHhcC-CCCCCCCCCCCC-CCCCCCCcceeeEEEeC--------CCCCEEEEEcCCCCCCCccccc
Q 043924 17 SEGCLDQERFALLRLKLFF-DDPFNSLHHWVD-DEGATDCCQWERVECSN--------TTGRVIQLDLSFIGNWDLKERY 86 (167)
Q Consensus 17 ~~~~~~~~~~aL~~~k~~~-~~~~~~~~~W~~-~~~~~~~c~w~gv~C~~--------~~~~v~~L~L~~~~l~~l~~~~ 86 (167)
..++..+|++||++||+.+ .++..+...|.. ..+..++|.|.|+.|+. ...+|+.|+|+++.+..+
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~l---- 96 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF---- 96 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSC----
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhc----
Confidence 3445578899999999988 555566778941 11123899999999952 357899999999998755
Q ss_pred cCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 87 LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 87 l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+..+..+++|++|++++|.++ .+|.. ++.+++|++|++++|+++ .+|..++++++|++|++++|++.|.+|.
T Consensus 97 --p~~l~~l~~L~~L~L~~n~l~-~lp~~----~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 97 --PDQAFRLSHLQHMTIDAAGLM-ELPDT----MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp --CSCGGGGTTCSEEEEESSCCC-CCCSC----GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred --ChhhhhCCCCCEEECCCCCcc-chhHH----HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 334667999999999999998 78887 889999999999999998 7888899999999999999999888886
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=7.9e-16 Score=111.29 Aligned_cols=105 Identities=23% Similarity=0.289 Sum_probs=65.3
Q ss_pred CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924 53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL 123 (167)
Q Consensus 53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l 123 (167)
..|.|+.+.|+.. ...++.|++++|.+..+.. ...+..+++|++|++++|.+++..|.. |..+
T Consensus 6 C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l 77 (192)
T 1w8a_A 6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS----DGLFGRLPHLVKLELKRNQLTGIEPNA----FEGA 77 (192)
T ss_dssp SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCC----SCSGGGCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred CEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCC----ccccccCCCCCEEECCCCCCCCcCHhH----cCCc
Confidence 3467888888741 2367889999988865432 113555666666666666666555554 5666
Q ss_pred CCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 124 ~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
++|++|++++|++++..|..|.++++|++|+|++|++++.+|
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 666666666666665555555566666666666666665544
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=1.4e-15 Score=112.91 Aligned_cols=110 Identities=24% Similarity=0.242 Sum_probs=63.3
Q ss_pred CCCCCCCCCCCcceeeEEEeC---------CCCCEEEEEcCCCCCCCcccc-------------------ccCCccccCC
Q 043924 44 HWVDDEGATDCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKER-------------------YLNASLFTPF 95 (167)
Q Consensus 44 ~W~~~~~~~~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l 95 (167)
.|.... ..|.|.+|.|+. ....++.|++++|.+..+... .+++..|..+
T Consensus 11 ~~~~~~---~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 11 AACPSQ---CSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87 (229)
T ss_dssp CCCCTT---CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCC---CEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence 444444 899999999975 235678899999988644210 0111223444
Q ss_pred CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
++|++|+|++|.+++..+.. +..+++|++|++++|+++ .+|..+..+++|++|+|++|+++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred CCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 55555555555555333332 455555555555555555 45555555666666666666655
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=7e-16 Score=132.23 Aligned_cols=91 Identities=30% Similarity=0.389 Sum_probs=83.9
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
..++.|++++|.++.. .+..++.++.|+.|+|++|.++|.+|.. ++.+++|++|||++|+++|.+|..+++
T Consensus 632 ~~L~~LdLs~N~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~ip~~----l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGY-----IPKEIGSMPYLFILNLGHNDISGSIPDE----VGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp BCCCEEECCSSCCBSC-----CCGGGGGCTTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccccEEECcCCccccc-----CCHHHhccccCCEEeCcCCccCCCCChH----HhCCCCCCEEECCCCcccCcCChHHhC
Confidence 4578999999988632 2556889999999999999999999998 999999999999999999999999999
Q ss_pred CCCCCEEECcCCcceecCCC
Q 043924 147 LSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG~iP~ 166 (167)
+++|++|++++|+++|.||+
T Consensus 703 l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCCSEEECCSSEEEEECCS
T ss_pred CCCCCEEECcCCcccccCCC
Confidence 99999999999999999996
No 9
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.60 E-value=3.1e-15 Score=106.30 Aligned_cols=103 Identities=23% Similarity=0.309 Sum_probs=86.4
Q ss_pred CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCC
Q 043924 54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS 124 (167)
Q Consensus 54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~ 124 (167)
.|.|+.+.|+. ....++.|+|++|.++.+. +..|..+++|++|+|++|.+++..+.. |..++
T Consensus 8 ~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~ 78 (170)
T 3g39_A 8 SCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLE-----PGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLT 78 (170)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCT
T ss_pred CcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccC-----hhhhcCcccCCEEECCCCCcCccChhh----ccCCC
Confidence 36788899974 1356788999999987543 456888999999999999999655554 78999
Q ss_pred CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+|++|+|++|+|++..|..|.++++|++|+|++|++++..+
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999999999998777789999999999999999987643
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1e-14 Score=103.77 Aligned_cols=100 Identities=24% Similarity=0.340 Sum_probs=58.2
Q ss_pred CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924 53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL 123 (167)
Q Consensus 53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l 123 (167)
..|.|.++.|+. ....++.|+++++.+..+. +..+..+++|++|++++|.+++..+.. +..+
T Consensus 5 C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l 75 (177)
T 2o6r_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSQNQIQSLPDGV----FDKL 75 (177)
T ss_dssp CEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTT----TTTC
T ss_pred CEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeC-----HHHhcCcccccEEECCCCcceEeChhH----ccCC
Confidence 456899999974 1346889999998876432 233445555666666666555333332 4555
Q ss_pred CCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 124 SNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 124 ~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
++|++|++++|++++..+..+.++++|++|++++|+++
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 113 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce
Confidence 55555555555555444444455555555555555554
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=1.9e-14 Score=104.79 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=61.8
Q ss_pred CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcC
Q 043924 53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLE 104 (167)
Q Consensus 53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls 104 (167)
..|.|.+|.|+.. ..+++.|+++++.+..+... .+.+..+..+++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 4578999999751 34688999999987643321 0111223445555555555
Q ss_pred CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+|.+++..+.. +..+++|++|++++|++++..+..+.++++|++|++++|++++
T Consensus 85 ~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 85 TNQLQSLPNGV----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp SSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCCccCHhH----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 55555333332 4556666666666666665444445666666666666666653
No 12
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=2.8e-14 Score=105.24 Aligned_cols=105 Identities=22% Similarity=0.317 Sum_probs=58.2
Q ss_pred CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc-------
Q 043924 53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG------- 116 (167)
Q Consensus 53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~------- 116 (167)
..|.|..|.|.. ....++.|++++|.+..+. +..|..+++|++|++++|.+++..|...
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~-----~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIP-----PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEEC-----TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcC-----HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 346788999974 1246889999999876443 2233444444444444444444333330
Q ss_pred -------------ccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 117 -------------IERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 117 -------------~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
...|..+++|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 0014455555555555555555555555555556666666665554
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=3.2e-14 Score=104.88 Aligned_cols=109 Identities=23% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCcccc--------------------ccCCccccCCCCccEEEc
Q 043924 53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKER--------------------YLNASLFTPFQQLESLYL 103 (167)
Q Consensus 53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~--------------------~l~~~~~~~l~~L~~L~L 103 (167)
..|.|..+.|+.. ...++.|++++|.+..+... .+.+..|..+++|++|++
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 3467888888641 23467888888887644210 011223445555555555
Q ss_pred CCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 104 EYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 104 s~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
++|.+++..|.. |..+++|++|++++|++++..|..|..+++|++|+|++|++++..|
T Consensus 89 s~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 89 TSNRLENVQHKM----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp CSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CCCccCccCHhH----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 555555444433 5566666666666666665556666666666666666666665444
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=102.66 Aligned_cols=99 Identities=24% Similarity=0.198 Sum_probs=74.1
Q ss_pred CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCC
Q 043924 54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLS 124 (167)
Q Consensus 54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~ 124 (167)
.|.|..+.|+. ....++.|++++|.++.+. ..+..+++|++|++++|.+++..+.. |..++
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~~----f~~l~ 78 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP------KELSNYKHLTLIDLSNNRISTLSNQS----FSNMT 78 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC------GGGGGCTTCCEEECCSSCCCCCCTTT----TTTCT
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH------HHhhcccCCCEEECCCCcCCEeCHhH----ccCCC
Confidence 45678888864 1346889999999887542 34667788888888888887655555 77788
Q ss_pred CCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 125 NLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 125 ~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 88888888888887777777788888888888888773
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=2.6e-14 Score=103.27 Aligned_cols=91 Identities=27% Similarity=0.305 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
-.+++.|+|++|.++.+. +..|..+++|++|++++|.+++..|.. |..+++|++|++++|++++.+|..+.
T Consensus 53 l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIE-----PNAFEGASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFE 123 (192)
T ss_dssp CTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSST
T ss_pred CCCCCEEECCCCCCCCcC-----HhHcCCcccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhh
Confidence 457899999999987543 456888999999999999999888776 89999999999999999999999999
Q ss_pred cCCCCCEEECcCCcceecCC
Q 043924 146 HLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~iP 165 (167)
.+++|++|+|++|+++|..|
T Consensus 124 ~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 124 HLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCCEEEeCCCCccCcCc
Confidence 99999999999999998765
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=8.9e-14 Score=115.36 Aligned_cols=101 Identities=27% Similarity=0.281 Sum_probs=68.3
Q ss_pred CCccee----eEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccc
Q 043924 53 DCCQWE----RVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER 119 (167)
Q Consensus 53 ~~c~w~----gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~ 119 (167)
.+|.+. .|.|.. .+..++.|+|++|.++.+. +..|.++++|++|+|++|.+++..|..
T Consensus 25 ~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~-----~~~f~~l~~L~~L~Ls~N~i~~i~~~~---- 95 (635)
T 4g8a_A 25 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLG-----SYSFFSFPELQVLDLSRCEIQTIEDGA---- 95 (635)
T ss_dssp CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTT----
T ss_pred CCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCC-----HHHHhCCCCCCEEECCCCcCCCcChhH----
Confidence 456542 477864 2356899999999987553 345667777777777777776544444
Q ss_pred cCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 120 ~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
|.++++|++|+|++|++++..|..|.++++|++|+|++|++++
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 138 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCC
Confidence 6677777777777777765555566677777777777776664
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.49 E-value=8.7e-14 Score=104.19 Aligned_cols=91 Identities=24% Similarity=0.291 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccc--------------------ccccCCCCCC
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEG--------------------IERLSRLSNL 126 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~--------------------~~~~~~l~~L 126 (167)
..++.|+++++.+..+. +..+..+++|++|++++|.+++..|... ...+..+++|
T Consensus 35 ~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLS-----DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEccCCCcCccC-----HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 34667777777665432 2234444445555555555444333320 0014455555
Q ss_pred CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
++|++++|++++..+..|..+++|++|+|++|++++
T Consensus 110 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 555555555554444444555555555555555553
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=1.3e-13 Score=113.24 Aligned_cols=100 Identities=28% Similarity=0.298 Sum_probs=84.2
Q ss_pred CCcceeeEEEeCC-----------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccC
Q 043924 53 DCCQWERVECSNT-----------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS 121 (167)
Q Consensus 53 ~~c~w~gv~C~~~-----------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~ 121 (167)
-.|.|.|+ |+.. ..+++.|++++|.++.+. +..+..+++|++|++++|.+++..|.. |.
T Consensus 2 ~~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~ 71 (549)
T 2z81_A 2 LSCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDA----FY 71 (549)
T ss_dssp CEECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEEC-----SSTTSSCTTCCEEECTTSCCCEECTTT----TT
T ss_pred ccCCCCce-EECCCCccccccccCCCCccEEECcCCccCccC-----hhhhhcCCcccEEECCCCCcCccChhh----cc
Confidence 46899998 8741 247899999999887542 456788999999999999999877776 89
Q ss_pred CCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 122 RLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 122 ~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
.+++|++|++++|++++..|..++++++|++|++++|++++
T Consensus 72 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 99999999999999998888889999999999999999885
No 19
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.6e-13 Score=97.83 Aligned_cols=99 Identities=25% Similarity=0.379 Sum_probs=79.7
Q ss_pred ceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCC
Q 043924 56 QWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNL 126 (167)
Q Consensus 56 ~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L 126 (167)
....+.|+. ....++.|+|++|.+..+. +..|..+++|++|+|++|.+++..+.. |..+++|
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L 83 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE-----PGVFDHLVNLQQLYFNSNKLTAIPTGV----FDKLTQL 83 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccC-----HHHhcCCcCCCEEECCCCCCCccChhH----hCCcchh
Confidence 345566753 1356788999999887543 456888999999999999999744444 7899999
Q ss_pred CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924 127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~ 163 (167)
++|+|++|+|++..+..|.++++|++|+|++|+++..
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999999999976666699999999999999999854
No 20
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.48 E-value=1.3e-13 Score=107.54 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=65.1
Q ss_pred cceeeEEEeCC-----------CCCEEEEEcCC-CCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCC
Q 043924 55 CQWERVECSNT-----------TGRVIQLDLSF-IGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSR 122 (167)
Q Consensus 55 c~w~gv~C~~~-----------~~~v~~L~L~~-~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~ 122 (167)
|.|..|.|... ..+++.|+|++ |.+..+. +..|..+++|++|+|++|.|++..|.. |.+
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~ 78 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-----LRDLRGLGELRNLTIVKSGLRFVAPDA----FHF 78 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-----GGGSCSCCCCSEEECCSSCCCEECTTG----GGS
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-----hhHhccccCCCEEECCCCccceeCHHH----hcC
Confidence 88888998752 12366777774 6665432 344666777777777777777766655 677
Q ss_pred CCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 123 LSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 123 l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+++|++|+|++|+|++..|..+..++ |+.|+|.+|.|..
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77777777777777755444455554 7777777777664
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.47 E-value=1.1e-13 Score=104.76 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=33.1
Q ss_pred CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
.+++|++|++++|.+++..+.. +..+++|++|++++|++++..|..|..+++|++|++++|+++
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGV----FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTT----TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCcCCHhH----cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 3444444444444444322222 455555555555555555544555555666666666666555
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=6.6e-14 Score=112.59 Aligned_cols=110 Identities=25% Similarity=0.338 Sum_probs=74.7
Q ss_pred CCcceee--EEEeCC--------CCCEEEEEcCCCCCCCcccc--------------------ccCCccccCCCCccEEE
Q 043924 53 DCCQWER--VECSNT--------TGRVIQLDLSFIGNWDLKER--------------------YLNASLFTPFQQLESLY 102 (167)
Q Consensus 53 ~~c~w~g--v~C~~~--------~~~v~~L~L~~~~l~~l~~~--------------------~l~~~~~~~l~~L~~L~ 102 (167)
..|.|.+ |.|+.. ..+++.|+|++|.+..+... .+.+..|..+++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 5677766 888752 25689999999987643210 11123456677777777
Q ss_pred cCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHh--hhcCCCCCEEECcCCcceecCCC
Q 043924 103 LEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS--VAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 103 Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~--l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+++|.+++..|.. +..+++|++|++++|++++.+|.. ++++++|++|++++|++++..|.
T Consensus 86 Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 86 LDYNQFLQLETGA----FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp CTTCTTCEECTTT----TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred CCCCccCccChhh----ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 7777777666665 777777777777777777766655 77777777777777777766553
No 23
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=101.19 Aligned_cols=89 Identities=22% Similarity=0.286 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
+++.|+|++|.+..+ .+..|..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..|..+
T Consensus 82 ~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 152 (220)
T 2v70_A 82 GVNEILLTSNRLENV-----QHKMFKGLESLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDNQITTVAPGAFDTL 152 (220)
T ss_dssp TCCEEECCSSCCCCC-----CGGGGTTCSSCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred CCCEEECCCCccCcc-----CHhHhcCCcCCCEEECCCCcCCeECHhH----cCCCccCCEEECCCCcCCEECHHHhcCC
Confidence 344555555554432 2445788999999999999999887877 9999999999999999999889999999
Q ss_pred CCCCEEECcCCcceecCC
Q 043924 148 SSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG~iP 165 (167)
++|++|++++|.+++..+
T Consensus 153 ~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 153 HSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTCCEEECCSCCEECSGG
T ss_pred CCCCEEEecCcCCcCCCc
Confidence 999999999999997654
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.45 E-value=3.8e-13 Score=105.24 Aligned_cols=103 Identities=32% Similarity=0.312 Sum_probs=84.1
Q ss_pred CCcceeeEEEeC-----------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccC
Q 043924 53 DCCQWERVECSN-----------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLS 121 (167)
Q Consensus 53 ~~c~w~gv~C~~-----------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~ 121 (167)
.+|.|.|+ |+. ...+++.|+++++.++.+. +..+..+++|++|++++|.+++..|.. +.
T Consensus 28 ~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~ 97 (353)
T 2z80_A 28 LSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYIS-----NSDLQRCVNLQALVLTSNGINTIEEDS----FS 97 (353)
T ss_dssp CEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TT
T ss_pred CCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccC-----HHHhccCCCCCEEECCCCccCccCHhh----cC
Confidence 78899887 653 1246889999999887543 446788999999999999999877776 89
Q ss_pred CCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 122 RLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 122 ~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
.+++|++|++++|++++..+..++++++|++|++++|+++ .+|.
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 141 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence 9999999999999999766666899999999999999988 4543
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=1.9e-13 Score=106.39 Aligned_cols=72 Identities=17% Similarity=0.038 Sum_probs=65.2
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
.+..+++|++|++++|.+.+.+|.. ++.+++|++|++++|++.+.+|..++++++|++|+|++|++.|.+|+
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred hhccCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 4677889999999999999888887 89999999999999999999999999999999999999999999986
No 26
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=9.8e-14 Score=107.27 Aligned_cols=74 Identities=27% Similarity=0.425 Sum_probs=69.4
Q ss_pred CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC-CCCEEECcCCcceecCCC
Q 043924 89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS-SLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~-~L~~L~L~~N~lsG~iP~ 166 (167)
+..+..+++|++|++++|.+++.+|.. +..+++|++|++++|+++|.+|..+++++ +|++|++++|+++|.+|.
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 445788999999999999999999988 99999999999999999999999999998 999999999999999885
No 27
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=5.4e-13 Score=94.75 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
..+++.|++++|.++.+. +..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+.
T Consensus 51 l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~ 121 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLP-----DGVFDKLTKLTILYLHENKLQSLPNGV----FDKLTQLKELALDTNQLKSVPDGIFD 121 (177)
T ss_dssp CTTCSEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cccccEEECCCCcceEeC-----hhHccCCCccCEEECCCCCccccCHHH----hhCCcccCEEECcCCcceEeCHHHhc
Confidence 357899999999887543 455788999999999999999766555 78999999999999999976666678
Q ss_pred cCCCCCEEECcCCcceecCC
Q 043924 146 HLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~iP 165 (167)
.+++|++|++++|+++|.+|
T Consensus 122 ~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 122 RLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TCTTCCEEECCSSCBCCCHH
T ss_pred CCcccCEEEecCCCeeccCc
Confidence 99999999999999998765
No 28
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1.1e-12 Score=96.66 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=71.1
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
+++.|+|++|.++.+ ++..|..+++|++|+|++|.+++..|.. |..+++|++|+|++|++++..+..|..+
T Consensus 81 ~L~~L~Ls~N~l~~l-----~~~~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l 151 (220)
T 2v9t_B 81 SLNSLVLYGNKITEL-----PKSLFEGLFSLQLLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAKGTFSPL 151 (220)
T ss_dssp SCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred CCCEEECCCCcCCcc-----CHhHccCCCCCCEEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECHHHHhCC
Confidence 445555555555432 2445778899999999999999877776 9999999999999999998888889999
Q ss_pred CCCCEEECcCCcceec
Q 043924 148 SSLTSLYLYSNRLEGN 163 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG~ 163 (167)
++|++|+|++|.++..
T Consensus 152 ~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 152 RAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred CCCCEEEeCCCCcCCC
Confidence 9999999999999753
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=93.77 Aligned_cols=89 Identities=25% Similarity=0.256 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
-.+++.|+|++|.++.+. +..|..+++|++|+|++|.+++..|.. |..+++|++|+|++|++++..+..|.
T Consensus 53 l~~L~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~~L~~L~L~~N~l~~~~~~~~~ 123 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLS-----NQSFSNMTQLLTLILSYNRLRCIPPRT----FDGLKSLRLLSLHGNDISVVPEGAFN 123 (193)
T ss_dssp CTTCCEEECCSSCCCCCC-----TTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred ccCCCEEECCCCcCCEeC-----HhHccCCCCCCEEECCCCccCEeCHHH----hCCCCCCCEEECCCCCCCeeChhhhh
Confidence 357899999999987543 456888999999999999999877766 99999999999999999976666799
Q ss_pred cCCCCCEEECcCCcceec
Q 043924 146 HLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~ 163 (167)
.+++|++|++++|.+.+.
T Consensus 124 ~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 124 DLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCTTCCEEECCSSCEECS
T ss_pred cCccccEEEeCCCCeecC
Confidence 999999999999999764
No 30
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.37 E-value=7.9e-13 Score=98.10 Aligned_cols=96 Identities=13% Similarity=0.209 Sum_probs=73.1
Q ss_pred EEEeC------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCc-eeeecCcccccccCCCCCCCEEeCc
Q 043924 60 VECSN------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNN-IAGCVENEGIERLSRLSNLKMLDLS 132 (167)
Q Consensus 60 v~C~~------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~-l~g~ip~~~~~~~~~l~~L~~L~ls 132 (167)
|.|.. ....++.|+++++.++.+. +..+..+++|++|++++|. +++..+.. |..+++|++|+++
T Consensus 18 v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~-----~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 18 VTCKDIQRIPSLPPSTQTLKLIETHLRTIP-----SHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIR 88 (239)
T ss_dssp EEECSCSSCCCCCTTCCEEEEESCCCSEEC-----TTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEE
T ss_pred eEccCccccCCCCCcccEEEEeCCcceEEC-----HHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECC
Confidence 55864 2347889999999887543 3457778889999999886 76444444 7888888888888
Q ss_pred C-CcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 133 E-NLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 133 ~-N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+ |++++..+..|.++++|++|++++|++++ +|
T Consensus 89 ~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp 121 (239)
T 2xwt_C 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FP 121 (239)
T ss_dssp EETTCCEECTTSEECCTTCCEEEEEEECCCS-CC
T ss_pred CCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cc
Confidence 8 88886666778888888888888888875 55
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=2.2e-12 Score=104.47 Aligned_cols=100 Identities=27% Similarity=0.269 Sum_probs=64.0
Q ss_pred eeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924 57 WERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK 127 (167)
Q Consensus 57 w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~ 127 (167)
|..|.|.. ....++.|+|++|.+..+. +..|..+++|++|+|++|.+++..|.. |.++++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~~~~~----~~~l~~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLN-----QDEFASFPHLEELELNENIVSAVEPGA----FNNLFNLR 83 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECTTSCCCEECTTT----TTTCTTCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceEC-----HhHccCCCCCCEEECCCCccCEeChhh----hhCCccCC
Confidence 67889974 2346789999999886543 344566667777777777666655555 66666666
Q ss_pred EEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+|+|++|++++..+..|.++++|++|+|++|++++..|
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 66666666664444445666666666666666655443
No 32
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=9.8e-13 Score=90.81 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch-hhHhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSV 144 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l 144 (167)
-.+++.|++++|.+..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|++++|++++. .|..+
T Consensus 41 l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-------ANLPKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp CTTCCEEECTTSCCCCC-------TTCCCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred cCCCcEEECcCCCCCCc-------hhhhcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChHHHHHH
Confidence 45789999999988754 34778999999999999999877776 77899999999999999973 55889
Q ss_pred hcCCCCCEEECcCCcceecC
Q 043924 145 AHLSSLTSLYLYSNRLEGNI 164 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~lsG~i 164 (167)
..+++|++|++++|++++..
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp GGCTTCCEEECTTCGGGGST
T ss_pred hhCCCCCEEeCcCCcccchH
Confidence 99999999999999998654
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.37 E-value=2e-12 Score=107.53 Aligned_cols=100 Identities=25% Similarity=0.262 Sum_probs=54.6
Q ss_pred CCcce----eeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccc
Q 043924 53 DCCQW----ERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIER 119 (167)
Q Consensus 53 ~~c~w----~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~ 119 (167)
+||.+ ..+.|.. ...+++.|++++|.+..+. +..|..+++|++|++++|.+++..|..
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~i~~~~---- 75 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILK-----SYSFSNFSELQWLDLSRCEIETIEDKA---- 75 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTCCCCEECTTT----
T ss_pred CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeC-----hhhccCCccCcEEeCCCCcccccCHHH----
Confidence 56765 3577753 2356889999999876432 223445555555555555555444443
Q ss_pred cCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 120 ~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
|.++++|++|++++|++++..|..|+++++|++|++++|+++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence 455555555555555555444444555555555555554444
No 34
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=2e-12 Score=101.76 Aligned_cols=104 Identities=25% Similarity=0.322 Sum_probs=59.3
Q ss_pred CcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccc--------------------cCCccccCCCCccEEEcC
Q 043924 54 CCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERY--------------------LNASLFTPFQQLESLYLE 104 (167)
Q Consensus 54 ~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~--------------------l~~~~~~~l~~L~~L~Ls 104 (167)
.|.+..+.|.. ....++.|+|++|.++.+.... +.+..|..+++|++|+|+
T Consensus 17 ~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 17 LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp EEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 35677888864 1344678999988876443210 111234445555555555
Q ss_pred CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+|.+++..+.. |..+++|++|+|++|++++..|..|.++++|++|+|++|+|+
T Consensus 97 ~N~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFL----FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHH----hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 55555433333 555566666666666666555555666666666666666665
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=2.5e-12 Score=93.46 Aligned_cols=90 Identities=23% Similarity=0.272 Sum_probs=74.9
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
.+++.|++++|.++.+ .+..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..+.+
T Consensus 76 ~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSL-----PNGVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp TTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CCcCEEECCCCcCCcc-----CHhHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHhcc
Confidence 4567777777766543 2445778999999999999999765555 789999999999999999877777899
Q ss_pred CCCCCEEECcCCcceecCC
Q 043924 147 LSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG~iP 165 (167)
+++|++|++++|.++|..|
T Consensus 147 l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CTTCCEEECCSCCBCCCTT
T ss_pred CCCccEEEecCCCeecCCC
Confidence 9999999999999988776
No 36
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=4e-12 Score=90.08 Aligned_cols=84 Identities=25% Similarity=0.196 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCC
Q 043924 70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149 (167)
Q Consensus 70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~ 149 (167)
+.++++++.+..+.. .+ .+.|++|++++|.+++..|.. |..+++|++|+|++|++++..|..|.++++
T Consensus 12 ~~l~~s~n~l~~ip~------~~--~~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSGKSLASVPT------GI--PTTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TEEECTTSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEeCCCCcCccCc------cC--CCCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 478999999876532 12 378999999999999877877 999999999999999999877777899999
Q ss_pred CCEEECcCCcceecCC
Q 043924 150 LTSLYLYSNRLEGNID 165 (167)
Q Consensus 150 L~~L~L~~N~lsG~iP 165 (167)
|++|+|++|+|++..|
T Consensus 80 L~~L~L~~N~l~~~~~ 95 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPR 95 (170)
T ss_dssp CCEEECCSSCCCCCCT
T ss_pred CCEEECCCCccCEeCH
Confidence 9999999999996443
No 37
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=3.4e-12 Score=99.52 Aligned_cols=84 Identities=19% Similarity=0.172 Sum_probs=73.2
Q ss_pred EEEcCCC-CCCCccccccCCccccCCCCccEEEcCC-CceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC
Q 043924 71 QLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEY-NNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS 148 (167)
Q Consensus 71 ~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~-n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~ 148 (167)
.++++++ ++..+ |. +..+++|++|+|++ |.+++..|.. |..+++|++|+|++|+|++..|..|.+++
T Consensus 12 ~v~~~~~n~l~~i------p~-l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDSL------HH-LPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTTT------TT-SCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCCcc------CC-CCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCc
Confidence 4588887 78765 34 77899999999996 9999776666 99999999999999999999999999999
Q ss_pred CCCEEECcCCcceecCCC
Q 043924 149 SLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 149 ~L~~L~L~~N~lsG~iP~ 166 (167)
+|++|+|++|+|++ +|+
T Consensus 81 ~L~~L~l~~N~l~~-~~~ 97 (347)
T 2ifg_A 81 RLSRLNLSFNALES-LSW 97 (347)
T ss_dssp CCCEEECCSSCCSC-CCS
T ss_pred CCCEEeCCCCccce-eCH
Confidence 99999999999995 443
No 38
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.35 E-value=3.9e-12 Score=94.15 Aligned_cols=89 Identities=25% Similarity=0.354 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
.+++.|+|++|.++.+ .+..+..+++|++|++++|.++ .+|.. +..+++|++|++++|++++..+..+..
T Consensus 88 ~~L~~L~Ls~N~l~~l-----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVL-----PSAVFDRLVHLKELFMCCNKLT-ELPRG----IERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp TTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCC-SCCTT----GGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCcCEEECCCCcCCcc-----ChhHhCcchhhCeEeccCCccc-ccCcc----cccCCCCCEEECCCCcCCccCHHHHhC
Confidence 3455666666655533 2445778999999999999998 78887 899999999999999999777778999
Q ss_pred CCCCCEEECcCCcceecCC
Q 043924 147 LSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG~iP 165 (167)
+++|++|++++|.+++..+
T Consensus 158 l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTCCEEECTTSCBCTTBG
T ss_pred CCCCCEEEeeCCCccCCcc
Confidence 9999999999999987654
No 39
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=2.5e-12 Score=107.16 Aligned_cols=88 Identities=25% Similarity=0.238 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchh-hHhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSI-LSSV 144 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~i-P~~l 144 (167)
-.+++.|+|++|.+..+ +..++.+++|++|+|++|.+++ +| . ++.+++|++|+|++|++++.+ |..+
T Consensus 462 l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~l~~-lp-~----l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDNALEN-VD-G----VANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp GTTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSSCCCC-CG-G----GTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred cccCcEeecCccccccc------chhhhcCCCCCEEECCCCCCCC-Cc-c----cCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 34688999999988755 3467889999999999999997 67 5 899999999999999999877 9999
Q ss_pred hcCCCCCEEECcCCcceecCC
Q 043924 145 AHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~lsG~iP 165 (167)
+.+++|+.|+|++|++++..|
T Consensus 530 ~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGCTTCCEEECTTSGGGGSSS
T ss_pred hcCCCCCEEEecCCcCCCCcc
Confidence 999999999999999998765
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.34 E-value=3.7e-12 Score=96.39 Aligned_cols=70 Identities=26% Similarity=0.356 Sum_probs=49.0
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..|..+.++++|++|++++|.++|.+|
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGV----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hccCccCCEEECCCCCcCccCHHH----hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 456667777777777776544443 6677777777777777777666667777777777777777776665
No 41
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=4.6e-12 Score=94.73 Aligned_cols=66 Identities=30% Similarity=0.450 Sum_probs=30.8
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..|..+++|++|+|++|+++
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred hcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 344455555555555554322222 344445555555555554433334444445555555555444
No 42
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=3.4e-12 Score=88.05 Aligned_cols=85 Identities=26% Similarity=0.303 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCCCC--CccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHh
Q 043924 66 TGRVIQLDLSFIGNW--DLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSS 143 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~--~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~ 143 (167)
..+++.++++++.+. .+ +..+..+++|++|++++|.+++. .. +..+++|++|++++|++++.+|..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~------~~~~~~l~~L~~L~l~~n~l~~~--~~----~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKL------EGLTDEFEELEFLSTINVGLTSI--AN----LPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCBTTBC------CSCCTTCTTCCEEECTTSCCCCC--TT----CCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCChhHH------HHHHhhcCCCcEEECcCCCCCCc--hh----hhcCCCCCEEECCCCcccchHHHH
Confidence 356889999999876 33 34567899999999999999875 44 899999999999999999889999
Q ss_pred hhcCCCCCEEECcCCccee
Q 043924 144 VAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 144 l~~l~~L~~L~L~~N~lsG 162 (167)
+.++++|++|++++|++++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp HHHCTTCCEEECTTSCCCS
T ss_pred hhhCCCCCEEECCCCcCCC
Confidence 9999999999999999986
No 43
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=6.3e-12 Score=89.45 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=70.5
Q ss_pred EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCC
Q 043924 70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149 (167)
Q Consensus 70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~ 149 (167)
+.++++++.+..++. .+ .+.|++|++++|.+++..|.. |..+++|++|+|++|+|++..+..|.++++
T Consensus 15 ~~l~~~~n~l~~iP~------~~--~~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA------GI--PTDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSSCCS------CC--CTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCccCC------Cc--CCCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 578999998876532 22 378999999999999877877 999999999999999999866666899999
Q ss_pred CCEEECcCCcceec
Q 043924 150 LTSLYLYSNRLEGN 163 (167)
Q Consensus 150 L~~L~L~~N~lsG~ 163 (167)
|++|+|++|+|++-
T Consensus 83 L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 83 LTQLDLNDNHLKSI 96 (174)
T ss_dssp CCEEECCSSCCCCC
T ss_pred hhEEECCCCcccee
Confidence 99999999999954
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.32 E-value=8.8e-12 Score=94.23 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=45.9
Q ss_pred CCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924 67 GRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK 127 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~ 127 (167)
..++.|+++++.+..+... .+.+..+..+++|++|++++|.+++..+.. +..+++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh----hcCCcccc
Confidence 3477788888776543210 011122344445555555555544433333 45555555
Q ss_pred EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+|++++|++++..+..++++++|++|++++|++++
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 55555555554433345555555555555555543
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=8.1e-12 Score=100.83 Aligned_cols=97 Identities=25% Similarity=0.312 Sum_probs=78.2
Q ss_pred eeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924 57 WERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK 127 (167)
Q Consensus 57 w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~ 127 (167)
|..|.|.. ...+++.|+|++|.+..+. +..|..+++|++|++++|.+++..|.. |..+++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQ-----ADTFRHLHHLEVLQLGRNSIRQIEVGA----FNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceEC-----HHHcCCCCCCCEEECCCCccCCcChhh----ccCcccCC
Confidence 56788874 1356889999999887543 456778899999999999998776666 88888999
Q ss_pred EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 99999999887666678888889999999888874
No 46
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=5.3e-13 Score=114.07 Aligned_cols=66 Identities=29% Similarity=0.482 Sum_probs=46.6
Q ss_pred CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 94 PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
.+++|++|+|++|.++ .+|.. |+.+++|++|+|++|+|+ .+|..|++|++|++|+|++|.|+ .||.
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~ 310 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAE----IKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW 310 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGG----GGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS
T ss_pred CCCCCCEEEeeCCcCc-ccChh----hhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh
Confidence 4666666677777666 56655 677777777777777777 66777777777777777777775 6664
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.31 E-value=5.2e-12 Score=101.48 Aligned_cols=72 Identities=28% Similarity=0.382 Sum_probs=55.7
Q ss_pred ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
..+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQS----FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hHhcCcccCCEEECCCCcccccChhh----ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 34566777888888888887766666 7788888888888888886555667788888888888888888777
No 48
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.30 E-value=9.6e-12 Score=94.11 Aligned_cols=70 Identities=30% Similarity=0.390 Sum_probs=47.9
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..|..++.+++|++|++++|++++..|
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGV----FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hccCCCCCEEECCCCccCccCHHH----hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 556667777777777766544443 5677777777777777776666666777777777777777776444
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1.9e-11 Score=92.78 Aligned_cols=92 Identities=22% Similarity=0.179 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCCCCCcccc-------------------ccCCccccCCCCccEEEcCCCc-eeeecCcccccccCCCCCC
Q 043924 67 GRVIQLDLSFIGNWDLKER-------------------YLNASLFTPFQQLESLYLEYNN-IAGCVENEGIERLSRLSNL 126 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~-------------------~l~~~~~~~l~~L~~L~Ls~n~-l~g~ip~~~~~~~~~l~~L 126 (167)
..++.|+++++.+..+... .+.+..+..+++|++|++++|. +....|.. +..+++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~----~~~l~~L 107 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT----FHGLGRL 107 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT----TTTCTTC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH----hcCCcCC
Confidence 4577888888776543210 0112234444555555555554 33322333 5555555
Q ss_pred CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
++|++++|++++..|..+.++++|++|++++|++++
T Consensus 108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 555555555555555555555666666666665553
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.29 E-value=6.4e-12 Score=104.19 Aligned_cols=74 Identities=23% Similarity=0.230 Sum_probs=55.8
Q ss_pred CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+..+..+++|++|+|++|.+++..|.. |.++++|++|+|++|++++..|..|.++++|++|+|++|+|++..|.
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~----f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred chhhhhccccCEEECCCCccCCcChHH----HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 345667777888888888887766666 77778888888888888777777777788888888888888776654
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=4.6e-12 Score=89.09 Aligned_cols=86 Identities=27% Similarity=0.315 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch-hhHhhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSVA 145 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l~ 145 (167)
.+++.|++++|.+..+ ..+..+++|++|++++|.+++.+|.. +..+++|++|++++|++++. .+..+.
T Consensus 49 ~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDML----AEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHH----HHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred CCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHH----HhhCCCCCEEeccCCccCcchhHHHHh
Confidence 4678888888887654 34677899999999999998877765 67789999999999999864 336788
Q ss_pred cCCCCCEEECcCCcceec
Q 043924 146 HLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~ 163 (167)
.+++|++|++++|++++.
T Consensus 118 ~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp SCSCCCEEECCSSGGGTS
T ss_pred cCCCCCEEEeeCCcCcch
Confidence 999999999999999854
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=3.7e-12 Score=97.58 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=67.7
Q ss_pred CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceee-------------
Q 043924 53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAG------------- 110 (167)
Q Consensus 53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g------------- 110 (167)
..|.|.+|.|+. ...+++.|+++++.+..+. ...+..+++|++|++++|.++.
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLP-----HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccC-----HhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 347899999985 1347899999999886543 2334455555555555555542
Q ss_pred ------------ecCcccccccCCCCCCCEEeCcCCcCCchhh-HhhhcCCCCCEEECcCCcceecCC
Q 043924 111 ------------CVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 111 ------------~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
.+|.. +..+++|++|++++|++++..+ ..+.++++|++|++++|++++.+|
T Consensus 80 L~~L~Ls~n~i~~l~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 80 LKYLDLSFNGVITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp CCEEECCSCSEEEEEEE----EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST
T ss_pred cCEEECCCCccccChhh----cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch
Confidence 23333 6667777777777777765443 456777777777777777776554
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.29 E-value=8e-12 Score=103.85 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=56.8
Q ss_pred eeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCE
Q 043924 58 ERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKM 128 (167)
Q Consensus 58 ~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~ 128 (167)
..+.|.. .+..++.|++++|.++.+. +..|..+++|++|++++|.+.+..|.. |.++++|++
T Consensus 15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~ 85 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQ-----NTTFSRLINLTFLDLTRCQIYWIHEDT----FQSQHRLDT 85 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEEC-----TTTSTTCTTCSEEECTTCCCCEECTTT----TTTCTTCCE
T ss_pred ceEECCCCCcccCcCCCCCcCcEEEccCCccCcCC-----hhHhccCccceEEECCCCccceeChhh----ccCccccCe
Confidence 4477753 2356889999999886442 334555666666666666665554554 555555555
Q ss_pred EeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 129 LDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 129 L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
|++++|++++..|..|+++++|++|++++|++++
T Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC
T ss_pred eeCCCCcccccChhhhcccccccEeeccccCccc
Confidence 5555555555555555555555555555555543
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=8.1e-12 Score=98.26 Aligned_cols=88 Identities=31% Similarity=0.325 Sum_probs=67.8
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhh---
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV--- 144 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l--- 144 (167)
+++.|+|++|.+..+ .+..|..+++|++|+|++|.+++..|.. |..+++|++|+|++|++++..+..|
T Consensus 89 ~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~ 159 (361)
T 2xot_A 89 NLRYLDLSSNHLHTL-----DEFLFSDLQALEVLLLYNNHIVVVDRNA----FEDMAQLQKLYLSQNQISRFPVELIKDG 159 (361)
T ss_dssp TCCEEECCSSCCCEE-----CTTTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred CCCEEECCCCcCCcC-----CHHHhCCCcCCCEEECCCCcccEECHHH----hCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence 344555555554422 2445788999999999999999877777 9999999999999999996444445
Q ss_pred hcCCCCCEEECcCCcceecCC
Q 043924 145 AHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~lsG~iP 165 (167)
..+++|++|+|++|+|++ +|
T Consensus 160 ~~l~~L~~L~L~~N~l~~-l~ 179 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKK-LP 179 (361)
T ss_dssp --CTTCCEEECCSSCCCC-CC
T ss_pred ccCCcCCEEECCCCCCCc-cC
Confidence 679999999999999984 44
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.28 E-value=3.9e-12 Score=110.03 Aligned_cols=103 Identities=20% Similarity=0.156 Sum_probs=59.9
Q ss_pred ceeeEEEeCCCCCEEEEEcCCCCCCCcccc--------------------ccCCccccCCCCccEEEcCCCceeeecCcc
Q 043924 56 QWERVECSNTTGRVIQLDLSFIGNWDLKER--------------------YLNASLFTPFQQLESLYLEYNNIAGCVENE 115 (167)
Q Consensus 56 ~w~gv~C~~~~~~v~~L~L~~~~l~~l~~~--------------------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~ 115 (167)
.|..|-+ ...+++.|+|++|.++.+... .+.+..|.++++|++|+|++|.+.+..|..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 4555554 256788899988887643210 111333555666666666666666555555
Q ss_pred cccccCCCCCCCEEeCcCCcCCchhhHh--hhcCCCCCEEECcCCcceecC
Q 043924 116 GIERLSRLSNLKMLDLSENLFNNSILSS--VAHLSSLTSLYLYSNRLEGNI 164 (167)
Q Consensus 116 ~~~~~~~l~~L~~L~ls~N~l~g~iP~~--l~~l~~L~~L~L~~N~lsG~i 164 (167)
|.++++|++|++++|++++.+|.. ++++++|++|+|++|++++..
T Consensus 93 ----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 93 ----FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp ----SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred ----ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc
Confidence 666666666666666666554443 556666666666666665543
No 56
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.27 E-value=1.8e-11 Score=93.71 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=38.5
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
.|..+++|++|++++|.+++..+.. |..+++|++|++++|++++..+..|.++++|++|+|++|+++ .||
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred HHcCCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 3445555555555555555433332 455566666666666665433344555666666666666665 444
No 57
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=1.4e-12 Score=111.54 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCCCCCcccc----------ccC-------CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEE
Q 043924 67 GRVIQLDLSFIGNWDLKER----------YLN-------ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKML 129 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~----------~l~-------~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L 129 (167)
..++.|+|++|.+..+... .+. +..+..+++|++|+|++|.|+ .+|.. ++.+++|++|
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L 298 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAE----LGSCFQLKYF 298 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSS----GGGGTTCSEE
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChh----hcCCCCCCEE
Confidence 5577888888877543321 111 244678999999999999999 78988 9999999999
Q ss_pred eCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 130 DLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 130 ~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+|++|+|+ .+|..|+++++|++|+|++|+|+|.+|.
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 99999997 7898899999999999999999998763
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.26 E-value=2e-11 Score=93.45 Aligned_cols=90 Identities=22% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
..+++.|++++|.+..+ +..+..+++|++|++++|.+++..|.. |..+++|++|++++|++++..+..|.
T Consensus 76 l~~L~~L~Ls~N~l~~l------~~~~~~l~~L~~L~l~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSL------PLLGQTLPALTVLDVSFNRLTSLPLGA----LRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp CTTCCEEECCSSCCSSC------CCCTTTCTTCCEEECCSSCCCCCCSST----TTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCcCCEEECCCCcCCcC------chhhccCCCCCEEECCCCcCcccCHHH----HcCCCCCCEEECCCCCCCccChhhcc
Confidence 45678888888887654 234667888888888888888655555 88888888888888888876666778
Q ss_pred cCCCCCEEECcCCcceecCCC
Q 043924 146 HLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~iP~ 166 (167)
.+++|++|+|++|+++ .+|.
T Consensus 146 ~l~~L~~L~L~~N~l~-~l~~ 165 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLT-ELPA 165 (290)
T ss_dssp TCTTCCEEECTTSCCS-CCCT
T ss_pred cccCCCEEECCCCcCC-ccCH
Confidence 8888888888888887 4443
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.26 E-value=2.5e-11 Score=97.65 Aligned_cols=97 Identities=26% Similarity=0.307 Sum_probs=72.7
Q ss_pred eeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924 57 WERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK 127 (167)
Q Consensus 57 w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~ 127 (167)
|..|.|.. ....++.|+|++|.+..+. +..|..+++|++|+|++|.+++..+.. |.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~i~~~~----~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIK-----VNSFKHLRHLEILQLSRNHIRTIEIGA----FNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEEC-----TTTTSSCSSCCEEECCSSCCCEECGGG----GTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeC-----HHHhhCCCCCCEEECCCCcCCccChhh----ccCCccCC
Confidence 56788874 1355788999999887543 355777888888888888887655555 77888888
Q ss_pred EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence 88888888886555667788888888888887774
No 60
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=1.4e-11 Score=89.01 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=41.5
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
+++.|+++++.+..+ +.+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..++++
T Consensus 67 ~L~~L~l~~n~~~~~-------~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 67 NIKDLTINNIHATNY-------NPISGLSNLERLRIMGKDVTSDKIPN----LSGLTSLTLLDISHSAHDDSILTKINTL 135 (197)
T ss_dssp TCSEEEEESCCCSCC-------GGGTTCTTCCEEEEECTTCBGGGSCC----CTTCTTCCEEECCSSBCBGGGHHHHTTC
T ss_pred CCCEEEccCCCCCcc-------hhhhcCCCCCEEEeECCccCcccChh----hcCCCCCCEEEecCCccCcHhHHHHhhC
Confidence 455555555544322 12344555555555555555444444 5555555555555555555455555555
Q ss_pred CCCCEEECcCCc
Q 043924 148 SSLTSLYLYSNR 159 (167)
Q Consensus 148 ~~L~~L~L~~N~ 159 (167)
++|++|++++|+
T Consensus 136 ~~L~~L~L~~n~ 147 (197)
T 4ezg_A 136 PKVNSIDLSYNG 147 (197)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEEccCCC
Confidence 555555555554
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.26 E-value=1.1e-11 Score=103.57 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=42.5
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
.|..+++|++|++++|.+++..|.. |+.+++|++|++++|++++..+..|+++++|++|+|++|.+++..|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 4556666666666666666544444 5666666666666666664444445666666666666666665444
No 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=9.3e-12 Score=103.66 Aligned_cols=85 Identities=27% Similarity=0.288 Sum_probs=76.2
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
.++.|+|++|.++.++ . +..+++|+.|++++|.++ .+|.. ++.+++|++|+|++|++++ +| .++++
T Consensus 442 ~L~~L~Ls~n~l~~lp------~-~~~l~~L~~L~Ls~N~l~-~lp~~----~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC------H-LEQLLLVTHLDLSHNRLR-ALPPA----LAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSSCC------C-GGGGTTCCEEECCSSCCC-CCCGG----GGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred CceEEEecCCCCCCCc------C-ccccccCcEeecCccccc-ccchh----hhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 4778999999987652 3 788999999999999999 78887 9999999999999999997 77 79999
Q ss_pred CCCCEEECcCCcceecC-CC
Q 043924 148 SSLTSLYLYSNRLEGNI-DV 166 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG~i-P~ 166 (167)
++|++|+|++|+|++.+ |.
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTG
T ss_pred CCCcEEECCCCCCCCCCCcH
Confidence 99999999999999876 64
No 63
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=7.8e-12 Score=87.91 Aligned_cols=90 Identities=24% Similarity=0.142 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhh---H
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSIL---S 142 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP---~ 142 (167)
.+++.|++++|.+... .+..+..+++|++|++++|.+++. .+.. +..+++|++|++++|++++..+ .
T Consensus 71 ~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----l~~l~~L~~L~l~~N~l~~~~~~~~~ 141 (168)
T 2ell_A 71 PKLKKLELSENRIFGG-----LDMLAEKLPNLTHLNLSGNKLKDISTLEP----LKKLECLKSLDLFNCEVTNLNDYRES 141 (168)
T ss_dssp SSCCEEEEESCCCCSC-----CCHHHHHCTTCCEEECBSSSCCSSGGGGG----GSSCSCCCEEECCSSGGGTSTTHHHH
T ss_pred CCCCEEECcCCcCchH-----HHHHHhhCCCCCEEeccCCccCcchhHHH----HhcCCCCCEEEeeCCcCcchHHHHHH
Confidence 4577888888877642 133355578888888888888753 2244 7888888888888888886554 4
Q ss_pred hhhcCCCCCEEECcCCcceecCCC
Q 043924 143 SVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 143 ~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
.+..+++|++|++++|.+. ++|.
T Consensus 142 ~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp HHTTCSSCCEETTEETTSC-BCCS
T ss_pred HHHhCccCcEecCCCCChh-hccc
Confidence 6788888888888888776 4453
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.25 E-value=2.2e-11 Score=92.39 Aligned_cols=70 Identities=24% Similarity=0.247 Sum_probs=48.4
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNI 164 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~i 164 (167)
.+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred HhcCccccCEEECCCCcccccCHhH----ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 3555667777777777776665655 677777777777777777666666777777777777777776543
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.24 E-value=6.7e-12 Score=99.28 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=49.5
Q ss_pred ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
..+..+++|++|++++|.+++..|.. +..+++|++|++++|+++...+..|.++++|++|++++|++++..|
T Consensus 87 ~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 87 YAFAYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred hhccCCCCcCEEECCCCCCCcCCHHH----hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 34666777777777777777655555 6777777777777777774333345777777777777777775444
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.23 E-value=9e-12 Score=104.83 Aligned_cols=96 Identities=11% Similarity=0.123 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCCCCCc--cccc----------cCCcccc--CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeC
Q 043924 66 TGRVIQLDLSFIGNWDL--KERY----------LNASLFT--PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l--~~~~----------l~~~~~~--~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~l 131 (167)
-.+++.|+|++|.++.. .... .-+..++ ++++|++|++++|.+.|.+|.. ++++++|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF----LKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT----TTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH----HhcCCCCCEEEC
Confidence 45788999999988751 0000 0145566 8899999999999999989887 889999999999
Q ss_pred cCCc-CCc-hhhHhhhcC------CCCCEEECcCCcceecCCC
Q 043924 132 SENL-FNN-SILSSVAHL------SSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 132 s~N~-l~g-~iP~~l~~l------~~L~~L~L~~N~lsG~iP~ 166 (167)
++|+ ++| .+|..++++ ++|++|++++|+++ .||.
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 9998 888 788877765 77777777777777 6664
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=2.7e-11 Score=92.77 Aligned_cols=71 Identities=24% Similarity=0.243 Sum_probs=45.3
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
.+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..+..+..+++|++|++++|++++.+|
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 3555666666666666666555554 6666666666666666665555556666666666666666666554
No 68
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=2.8e-11 Score=85.88 Aligned_cols=85 Identities=25% Similarity=0.247 Sum_probs=66.5
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH--hhh
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS--SVA 145 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~--~l~ 145 (167)
+++.|++++|.++.+ ..+..+++|++|++++|.+++. |+. .+..+++|++|++++|+++ .+|. .+.
T Consensus 43 ~L~~L~Ls~N~l~~~-------~~l~~l~~L~~L~Ls~N~l~~~-~~~---~~~~l~~L~~L~L~~N~i~-~~~~~~~l~ 110 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-------DGFPLLRRLKTLLVNNNRICRI-GEG---LDQALPDLTELILTNNSLV-ELGDLDPLA 110 (176)
T ss_dssp CCSEEECCSSCCCEE-------CCCCCCSSCCEEECCSSCCCEE-CSC---HHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred CCCEEECCCCCCCcc-------cccccCCCCCEEECCCCccccc-Ccc---hhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence 678888888877654 2467788999999999999854 443 1478889999999999996 5665 788
Q ss_pred cCCCCCEEECcCCcceecCC
Q 043924 146 HLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~iP 165 (167)
.+++|++|++++|.++ .+|
T Consensus 111 ~l~~L~~L~l~~N~i~-~~~ 129 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVT-NKK 129 (176)
T ss_dssp GCTTCCEEECCSSGGG-GST
T ss_pred cCCCCCEEEecCCCCC-CcH
Confidence 8999999999999887 444
No 69
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=4.4e-11 Score=84.83 Aligned_cols=86 Identities=22% Similarity=0.161 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCC-CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPF-QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSV 144 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l-~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l 144 (167)
...++.|++++|.+..+. . +..+ ++|++|++++|.+++. .. +..+++|++|++++|++++..|..+
T Consensus 18 ~~~L~~L~l~~n~l~~i~------~-~~~~~~~L~~L~Ls~N~l~~~--~~----l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE------N-LGATLDQFDAIDFSDNEIRKL--DG----FPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp TTSCEEEECTTSCCCSCC------C-GGGGTTCCSEEECCSSCCCEE--CC----CCCCSSCCEEECCSSCCCEECSCHH
T ss_pred cCCceEEEeeCCCCchhH------H-hhhcCCCCCEEECCCCCCCcc--cc----cccCCCCCEEECCCCcccccCcchh
Confidence 457899999999987552 2 3344 4999999999999975 34 8999999999999999997555556
Q ss_pred hcCCCCCEEECcCCcceecCC
Q 043924 145 AHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~lsG~iP 165 (167)
..+++|++|++++|+++ .+|
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~ 104 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELG 104 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGG
T ss_pred hcCCCCCEEECCCCcCC-cch
Confidence 99999999999999995 454
No 70
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.21 E-value=2.2e-11 Score=102.52 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=62.0
Q ss_pred CCCEEEEEcCCCCCCCcccc-----------c--------cCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCC
Q 043924 66 TGRVIQLDLSFIGNWDLKER-----------Y--------LNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNL 126 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~-----------~--------l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L 126 (167)
..+++.|+++++.+..+... . +.+..+..+++|++|++++|.+++..+.. |.++++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L 99 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNL 99 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTT----TTTCTTC
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhh----hccCCCC
Confidence 35688888888877644321 0 11223445566666666666666332223 6777777
Q ss_pred CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 127 KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 127 ~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
++|++++|++++..|..|+++++|++|++++|++++..|.
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 7777777777766666777777788888888777766553
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.21 E-value=4.8e-11 Score=92.34 Aligned_cols=100 Identities=25% Similarity=0.280 Sum_probs=67.7
Q ss_pred CCcceeeEEEeC---------CCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924 53 DCCQWERVECSN---------TTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL 123 (167)
Q Consensus 53 ~~c~w~gv~C~~---------~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l 123 (167)
..|.|+.+.|.. ....++.|+++++.+..+. +..+..+++|++|++++|.+++..|.. +..+
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l 99 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK-----DGDFKNLKNLHTLILINNKISKISPGA----FAPL 99 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBC-----TTTTTTCTTCCEEECCSSCCCCBCTTT----TTTC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeC-----hhhhccCCCCCEEECCCCcCCeeCHHH----hcCC
Confidence 457899999974 1346788999999887543 334666777777777777777655655 6666
Q ss_pred CCCCEEeCcCCcCC---------------------chhhHhhhcCCCCCEEECcCCcce
Q 043924 124 SNLKMLDLSENLFN---------------------NSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 124 ~~L~~L~ls~N~l~---------------------g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
++|++|++++|+++ +..+..+.++++|++|++++|+++
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 66666666666554 444455667777777777777764
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=1.7e-11 Score=95.92 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=83.8
Q ss_pred cceeeEEEeCC---------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCC
Q 043924 55 CQWERVECSNT---------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSN 125 (167)
Q Consensus 55 c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~ 125 (167)
|.++.|.|+.. ...++.|+|++|.++.+. ...|.++++|++|+|++|.+.+.+|.. .|.++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~-----~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~ 80 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQ-----KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPK 80 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEEC-----TTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcC-----HHHHcCCCCCCEEECcCCCCCCccChh---Hhhcchh
Confidence 67889999741 246889999999987553 456889999999999999998888864 2788888
Q ss_pred CCE-EeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924 126 LKM-LDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 126 L~~-L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~ 163 (167)
++. +.++.|+++...|..|..+++|++|++++|++++.
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred hhhhhcccCCcccccCchhhhhccccccccccccccccC
Confidence 765 66778999987788899999999999999999854
No 73
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.20 E-value=5.5e-11 Score=98.81 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=59.7
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhhc
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVAH 146 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~~ 146 (167)
+++.|++++|.+..+ .+..|..+++|++|++++|.+++..|.. ++.+++|++|++++|++++ .+|..+++
T Consensus 81 ~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 81 HLSNLILTGNPIQSF-----SPGSFSGLTSLENLVAVETKLASLESFP----IGQLITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TCCEEECTTCCCCCC-----CTTSSTTCTTCCEEECTTSCCCCSSSSC----CTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred hcCEeECCCCccccc-----ChhhcCCcccCCEEEccCCccccccccc----cCCCCCCCEEeCCCCcccceechHhHhh
Confidence 344444444444322 1344666777777777777776544444 7777788888888888775 56778888
Q ss_pred CCCCCEEECcCCcceecCCC
Q 043924 147 LSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG~iP~ 166 (167)
+++|++|++++|++++..|.
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CTTCCEEECCSSCCCEECTT
T ss_pred cCCCCEEEccCCcceecChh
Confidence 88888888888888775543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.20 E-value=6.4e-11 Score=89.39 Aligned_cols=86 Identities=24% Similarity=0.289 Sum_probs=43.4
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
.++.|+++++.+..+. +..|..+++|++|++++|.++...+.. +..+++|++|++++|++++..+..+.++
T Consensus 38 ~l~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~i~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLP-----SKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp TCSEEECCSSCCSCCC-----TTSSSSCTTCCEEECCSSCCSCCCTTT----TSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECcCCCCCeeC-----HHHhcCCCCCCEEECCCCccCeeChhh----hcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 4667777777665332 223444555555555555554222222 3445555555555555554444444555
Q ss_pred CCCCEEECcCCccee
Q 043924 148 SSLTSLYLYSNRLEG 162 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG 162 (167)
++|++|++++|++++
T Consensus 109 ~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 109 VNLAELRLDRNQLKS 123 (270)
T ss_dssp SSCCEEECCSSCCCC
T ss_pred cCCCEEECCCCccCe
Confidence 555555555555543
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=6.5e-11 Score=91.76 Aligned_cols=100 Identities=26% Similarity=0.302 Sum_probs=65.4
Q ss_pred CCcceeeEEEeCC---------CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCC
Q 043924 53 DCCQWERVECSNT---------TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRL 123 (167)
Q Consensus 53 ~~c~w~gv~C~~~---------~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l 123 (167)
..|.|+.+.|... ..+++.|+++++.+..+. +..+..+++|++|++++|.+++..|.. +..+
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l 101 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELR-----KDDFKGLQHLYALVLVNNKISKIHEKA----FSPL 101 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEEECCSSCCCEECGGG----STTC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccC-----HhHhhCCCCCcEEECCCCccCccCHhH----hhCc
Confidence 3478999999741 246889999999886442 344666777777777777777655655 6666
Q ss_pred CCCCEEeCcCCcCC---------------------chhhHhhhcCCCCCEEECcCCcce
Q 043924 124 SNLKMLDLSENLFN---------------------NSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 124 ~~L~~L~ls~N~l~---------------------g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
++|++|++++|+++ +..+..+.++++|++|++++|+++
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 66666666666554 333334566666666666666664
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=4.6e-11 Score=90.23 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVA 145 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~ 145 (167)
.+++.|++++|.+..+ .+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|++++ .+|..++
T Consensus 76 ~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 76 SHLSTLILTGNPIQSL-----ALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp TTCCEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cCCCEEECCCCccCcc-----ChhhhcCCccccEEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhc
Confidence 3455666666655432 2355788999999999999998765555 8999999999999999987 4799999
Q ss_pred cCCCCCEEECcCCcceecCC
Q 043924 146 HLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~iP 165 (167)
++++|++|++++|++++..|
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp GCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCEEECCCCCCCcCCH
Confidence 99999999999999987543
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=98.93 Aligned_cols=63 Identities=37% Similarity=0.375 Sum_probs=30.6
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhhhcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
|..+++|++|++++|.++ .+|. . .+++|++|++++|++++ .+|..++++++|++|++++|+++
T Consensus 65 ~~~l~~L~~L~Ls~N~l~-~lp~-----~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 65 FKFNQELEYLDLSHNKLV-KISC-----H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp GTTCTTCCEEECCSSCCC-EEEC-----C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred hhcccCCCEEecCCCcee-ecCc-----c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 444444444444444444 2332 1 44455555555555544 34455555555555555555554
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=6.4e-11 Score=97.47 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=58.1
Q ss_pred ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
..+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..|..+.++++|++|++++|+++|.+|.
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhcccCCCEEECCCCccccCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 34666778888888888888776766 78888888888888888877777788888888888888888888774
No 79
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=6.4e-11 Score=85.43 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
...++.|++++|.+.... +..+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+.+| .+.
T Consensus 87 l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~i~~~~~~~----l~~l~~L~~L~L~~n~~i~~~~-~l~ 156 (197)
T 4ezg_A 87 LSNLERLRIMGKDVTSDK-----IPNLSGLTSLTLLDISHSAHDDSILTK----INTLPKVNSIDLSYNGAITDIM-PLK 156 (197)
T ss_dssp CTTCCEEEEECTTCBGGG-----SCCCTTCTTCCEEECCSSBCBGGGHHH----HTTCSSCCEEECCSCTBCCCCG-GGG
T ss_pred CCCCCEEEeECCccCccc-----ChhhcCCCCCCEEEecCCccCcHhHHH----HhhCCCCCEEEccCCCCccccH-hhc
Confidence 356888999998876321 344677888999999999988777766 8888889999998888444566 588
Q ss_pred cCCCCCEEECcCCccee
Q 043924 146 HLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG 162 (167)
.+++|++|++++|++++
T Consensus 157 ~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD 173 (197)
T ss_dssp GCSSCCEEECTTBCCCC
T ss_pred CCCCCCEEECCCCCCcC
Confidence 88888888888888875
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=1e-10 Score=94.07 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=48.8
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+..+++|++|++++|.+++..|.. |..+++|++|++++|++++..|..|.++++|++|+|++|++++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred cCCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 455667777777777777666665 7777777777777777777667777777777777777777774
No 81
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.15 E-value=9.4e-11 Score=97.39 Aligned_cols=88 Identities=24% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
-.+++.|++++|.+..+ .+..|..+++|++|++++|.+++..|.. ++.+++|++|++++|++++..|..++
T Consensus 56 l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWI-----HEDTFQSQHRLDTLVLTANPLIFMAETA----LSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp CTTCSEEECTTCCCCEE-----CTTTTTTCTTCCEEECTTCCCSEECTTT----TSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred CccceEEECCCCcccee-----ChhhccCccccCeeeCCCCcccccChhh----hcccccccEeeccccCcccCCcchhc
Confidence 35688899998887643 2456778888888888888888777776 88888888888888888876677788
Q ss_pred cCCCCCEEECcCCccee
Q 043924 146 HLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG 162 (167)
++++|++|++++|++++
T Consensus 127 ~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISS 143 (606)
T ss_dssp TCTTCCEEECCSSCCCC
T ss_pred cCCcccEEECCCCcccc
Confidence 88888888888888876
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=2.8e-11 Score=105.20 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCCCCCc--cccc----------cCCcccc--CCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeC
Q 043924 66 TGRVIQLDLSFIGNWDL--KERY----------LNASLFT--PFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDL 131 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l--~~~~----------l~~~~~~--~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~l 131 (167)
-.+++.|+|++|.++.. .... .-+..++ ++++|++|+|++|.+.|.+|.. ++++++|++|++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~----l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF----LYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG----GGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH----HhCCCCCCEEEC
Confidence 35789999999998750 0000 0134455 8999999999999999999987 999999999999
Q ss_pred cCCc-CCc-hhhHhhhcCC-------CCCEEECcCCcceecCCC
Q 043924 132 SENL-FNN-SILSSVAHLS-------SLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 132 s~N~-l~g-~iP~~l~~l~-------~L~~L~L~~N~lsG~iP~ 166 (167)
++|+ ++| .+|..+++++ +|++|+|++|+++ .||.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 9998 999 8998887766 9999999999999 8885
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.15 E-value=1e-10 Score=95.61 Aligned_cols=103 Identities=22% Similarity=0.098 Sum_probs=59.7
Q ss_pred ceeeEEEeCCCCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccc------------------
Q 043924 56 QWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGI------------------ 117 (167)
Q Consensus 56 ~w~gv~C~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~------------------ 117 (167)
...++.|.. ...++.|++++|.+..+. +..+..+++|++|++++|.+++.+|....
T Consensus 110 ~l~~~~~~~-l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 110 NISRVSCSR-GQGKKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCCCEEECC-CSSCEEEECCSSCCCSGG-----GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCCCCccc-cCCCCEEECCCCCCCCCC-----chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 444555543 345777777777765432 22334455555555555555544443300
Q ss_pred -cccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 118 -ERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 118 -~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
+....+++|++|++++|++++..| .+..+++|+.|+|++|++++ +|.
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~ 231 (487)
T 3oja_A 184 VKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEK 231 (487)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECT
T ss_pred ccccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cch
Confidence 003346777777777777776433 47777888888888888875 453
No 84
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.15 E-value=1.1e-10 Score=94.18 Aligned_cols=67 Identities=27% Similarity=0.257 Sum_probs=49.1
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+..+++|++|++++|.+++..|.. |..+++|++|++++|++++..|..|..+++|++|+|++|++++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 455667777777777777666665 7777777777777777777767777777777777777777774
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.15 E-value=1.7e-10 Score=94.91 Aligned_cols=71 Identities=23% Similarity=0.272 Sum_probs=40.2
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee-cCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG-NID 165 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG-~iP 165 (167)
.|..+++|++|++++|.+++..|.. |..+++|++|++++|++++..+..++++++|++|++++|.+++ .+|
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp 142 (570)
T 2z63_A 71 AYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (570)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTT----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cccCchhCCEEeCcCCcCCccCHhh----hcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence 3445555555555555555444444 5566666666666666654333346666666666666666654 344
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.15 E-value=7.7e-11 Score=97.46 Aligned_cols=84 Identities=25% Similarity=0.201 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
.+++.|++++|.+..+. +..|..+++|++|++++|.+++..|.. |..+++|++|++++|+++ .+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELR-----MPDISFLSELRVLRLSHNRIRSLDFHV----FLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCC-----GGGTTTCTTCCEEECCSCCCCEECTTT----TTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCcCEEECCCCCccccC-----hhhhccCCCccEEECCCCCCCcCCHHH----hCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 45777777777766442 234555666666666666666555554 555555555555555555 34443 4
Q ss_pred CCCCCEEECcCCccee
Q 043924 147 LSSLTSLYLYSNRLEG 162 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG 162 (167)
+++|++|++++|++++
T Consensus 120 l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 120 MASLRHLDLSFNDFDV 135 (562)
T ss_dssp CTTCSEEECCSSCCSB
T ss_pred cccCCEEECCCCCccc
Confidence 5555555555555543
No 87
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=3.4e-11 Score=98.89 Aligned_cols=91 Identities=22% Similarity=0.230 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc-hhhHhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN-SILSSV 144 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g-~iP~~l 144 (167)
-.+++.|++++|.+..+. +..|..+++|++|++++|.+++..|.. ++.+++|++|++++|++++ .+|..+
T Consensus 49 l~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~ 119 (549)
T 2z81_A 49 CANLQVLILKSSRINTIE-----GDAFYSLGSLEHLDLSDNHLSSLSSSW----FGPLSSLKYLNLMGNPYQTLGVTSLF 119 (549)
T ss_dssp CTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECTTSCCCSCCHHH----HTTCTTCCEEECTTCCCSSSCSSCSC
T ss_pred CCcccEEECCCCCcCccC-----hhhccccccCCEEECCCCccCccCHHH----hccCCCCcEEECCCCcccccchhhhh
Confidence 356778888888775432 344666677777777777776555544 6666667777777776665 345556
Q ss_pred hcCCCCCEEECcCCcceecCC
Q 043924 145 AHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 145 ~~l~~L~~L~L~~N~lsG~iP 165 (167)
+++++|++|++++|++.+.+|
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEEC
T ss_pred hccCCccEEECCCCccccccC
Confidence 666666666666666554554
No 88
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.14 E-value=1.4e-10 Score=91.74 Aligned_cols=66 Identities=27% Similarity=0.321 Sum_probs=36.0
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+..+++|++|++++|.++ .+|.. .+..+++|++|++++|++++..|..+.++++|++|++++|+++
T Consensus 113 ~~~l~~L~~L~L~~n~l~-~l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLS-SLPRG---IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTT---TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred hcCCCCCCEEECCCCccC-cCCHH---HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 445555566666655555 23332 1355555566666665555555555555555666666555555
No 89
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.13 E-value=7.3e-11 Score=96.43 Aligned_cols=88 Identities=23% Similarity=0.125 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
.+++.|++++|.+..+. +..+..+++|++|++++|.+++..|.. |..+++|++|++++|+++ .+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-----TSDILSLSKLRILIISHNRIQYLDISV----FKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCC-----HHHHTTCTTCCEEECCSSCCCEEEGGG----GTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccEEECCCCcccccC-----hhhccccccccEEecCCCccCCcChHH----hhcccCCCEEecCCCcee-ecCcc--c
Confidence 67899999999887543 345788999999999999999887877 999999999999999999 57776 8
Q ss_pred CCCCCEEECcCCccee-cCCC
Q 043924 147 LSSLTSLYLYSNRLEG-NIDV 166 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG-~iP~ 166 (167)
+++|++|++++|++++ .+|.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~ 109 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICK 109 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCG
T ss_pred cCCccEEeccCCccccccchh
Confidence 9999999999999987 5664
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=8.9e-11 Score=90.44 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeec--CcccccccCCCCCCCEEeCcCCcCCc--hhh-
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCV--ENEGIERLSRLSNLKMLDLSENLFNN--SIL- 141 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~i--p~~~~~~~~~l~~L~~L~ls~N~l~g--~iP- 141 (167)
.+++.|++++|.+..+ .+..+..+++|++|++++|.+.|.+ |.. ..+..+++|++|++++|++++ .++
T Consensus 149 ~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNF-----SCEQVRVFPALSTLDLSDNPELGERGLISA--LCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp TTCCEEEEESCSCCCC-----CTTTCCCCSSCCEEECCSCTTCHHHHHHHH--SCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CCCcEEEeeCCCCccc-----hHHHhccCCCCCEEECCCCCcCcchHHHHH--HHhccCCCCCEEECCCCcCcchHHHHH
Confidence 3455666666655432 2345667888888888888877652 333 002677778888888887773 233
Q ss_pred HhhhcCCCCCEEECcCCcceecCC
Q 043924 142 SSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 142 ~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
..+.++++|++|++++|++++.+|
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHhcCCCCCEEECCCCcCCcccc
Confidence 334567777888888887777654
No 91
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=94.31 Aligned_cols=66 Identities=27% Similarity=0.283 Sum_probs=33.0
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
|..+++|++|++++|.+.+..|.. +..+++|++|++++|++++..|..|.++++|++|++++|+++
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp STTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred ccCCCCCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 344445555555555554444443 445555555555555555444444555555555555555544
No 92
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.12 E-value=1.6e-10 Score=89.44 Aligned_cols=85 Identities=20% Similarity=0.294 Sum_probs=63.4
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
+++.|++++|.+..+ .+..+..+++|++|++++|.+++..+.. +..+++|++|++++|+++ .+|..+..+
T Consensus 193 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 193 SLTELHLDGNKITKV-----DAASLKGLNNLAKLGLSFNSISAVDNGS----LANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp TCSEEECTTSCCCEE-----CTGGGTTCTTCCEEECCSSCCCEECTTT----GGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred cCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCceeChhh----ccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 344555555544422 2345677888888888888888766655 788888888888888888 778888888
Q ss_pred CCCCEEECcCCccee
Q 043924 148 SSLTSLYLYSNRLEG 162 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG 162 (167)
++|++|++++|++++
T Consensus 263 ~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 263 KYIQVVYLHNNNISA 277 (330)
T ss_dssp SSCCEEECCSSCCCC
T ss_pred CCcCEEECCCCcCCc
Confidence 888888888888874
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=1.8e-10 Score=96.15 Aligned_cols=92 Identities=25% Similarity=0.277 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCCCCCccc-----------c--------ccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC
Q 043924 67 GRVIQLDLSFIGNWDLKE-----------R--------YLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK 127 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~-----------~--------~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~ 127 (167)
.+++.|+|+++.+..+.. + .+.+..|+.+++|++|++++|.+++..+.. |+.+++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI----FHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHH----hccCCCCC
Confidence 457788888877643321 1 122345788999999999999998544443 68999999
Q ss_pred EEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 128 MLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 128 ~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+|++++|++++..|..|+++++|++|++++|.+++
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 99999999999888899999999999999999986
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.11 E-value=1.4e-11 Score=95.04 Aligned_cols=62 Identities=21% Similarity=0.256 Sum_probs=44.5
Q ss_pred CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch--hhHhh--hcCCCCCEEECcCCcce
Q 043924 96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS--ILSSV--AHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~--iP~~l--~~l~~L~~L~L~~N~ls 161 (167)
++|++|++++|.+.+..|.. ++.+++|++|++++|++.|. +|..+ .++++|++|++++|+++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQ----VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTT----CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCcEEEeeCCCCccchHHH----hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 67777777777776655555 77777888888888877765 34444 67778888888888776
No 95
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.09 E-value=1.9e-10 Score=96.83 Aligned_cols=87 Identities=26% Similarity=0.287 Sum_probs=52.0
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
+++.|++++|.+..+. +..|..+++|++|++++|.+++..|.. ++.+++|++|++++|++++..|..++++
T Consensus 74 ~L~~L~L~~n~l~~l~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLS-----DKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp TCCEEECCSSCCCCCC-----TTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred CcCEEECCCCccCccC-----hhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchhhccc
Confidence 4555666665554332 234556666666666666666444444 6666666666666666666656666666
Q ss_pred CCCCEEECcCCcceec
Q 043924 148 SSLTSLYLYSNRLEGN 163 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG~ 163 (167)
++|++|++++|++++.
T Consensus 145 ~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 145 ENLQELLLSNNKIQAL 160 (680)
T ss_dssp TTCCEEECCSSCCCCB
T ss_pred ccCCEEEccCCccccc
Confidence 6666666666666543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.07 E-value=5.6e-11 Score=99.05 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCc-----ceeeE-EEeCCCCCEEEEEcCCCCCCCcccc--------ccCCcc----ccCCCCccEEEcC
Q 043924 43 HHWVDDEGATDCC-----QWERV-ECSNTTGRVIQLDLSFIGNWDLKER--------YLNASL----FTPFQQLESLYLE 104 (167)
Q Consensus 43 ~~W~~~~~~~~~c-----~w~gv-~C~~~~~~v~~L~L~~~~l~~l~~~--------~l~~~~----~~~l~~L~~L~Ls 104 (167)
.+|..+. ++| .|.|+ .|. ..+++.|+++++.++.++.. .+.... ...+++|++|+++
T Consensus 34 ~~W~~~~---~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls 108 (571)
T 3cvr_A 34 DKWEKQA---LPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDAC 108 (571)
T ss_dssp HHHHTTC---CTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred HHHhccC---Cccccccchhhhccccc--cCCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEcc
Confidence 3565544 677 69998 787 45788899988887654321 000000 0223455555555
Q ss_pred CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+|.+++ +|. +.. +|++|++++|++++ +|. .+++|++|+|++|+|++
T Consensus 109 ~N~l~~-ip~-----l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 109 DNRLST-LPE-----LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp SSCCSC-CCC-----CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCCC-cch-----hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence 555554 443 122 55555555555554 443 44555555555555554
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.07 E-value=1.3e-10 Score=90.01 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=65.5
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
.++.|++++|.+..+ .+..+..+++|++|++++|.+++..+.. +..+++|++|++++|+++ .+|..+..+
T Consensus 194 ~L~~L~l~~n~i~~~-----~~~~l~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 194 TLNELHLDHNKIQAI-----ELEDLLRYSKLYRLGLGHNQIRMIENGS----LSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp SCSCCBCCSSCCCCC-----CTTSSTTCTTCSCCBCCSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCCEEECCCCcCCcc-----CHHHhcCCCCCCEEECCCCcCCcCChhH----hhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 344555555554432 2345677888999999999988766655 888889999999999988 788888889
Q ss_pred CCCCEEECcCCcceec
Q 043924 148 SSLTSLYLYSNRLEGN 163 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG~ 163 (167)
++|++|++++|++++.
T Consensus 264 ~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKV 279 (332)
T ss_dssp TTCCEEECCSSCCCBC
T ss_pred ccCCEEECCCCCCCcc
Confidence 9999999999988843
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.07 E-value=3.1e-10 Score=93.84 Aligned_cols=84 Identities=25% Similarity=0.207 Sum_probs=73.7
Q ss_pred EEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCC
Q 043924 70 IQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSS 149 (167)
Q Consensus 70 ~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~ 149 (167)
+.+++++++++.++. .+ .++|++|++++|.+++..|.. |..+++|++|++++|++++..|..|.++++
T Consensus 34 ~~l~ls~~~L~~ip~------~~--~~~L~~L~Ls~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK------DL--PPRTKALSLSQNSISELRMPD----ISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTTSCCCSCCT------TS--CTTCCEEECCSSCCCCCCGGG----TTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCCCCCccCCC------CC--CCCcCEEECCCCCccccChhh----hccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 789999999886532 12 278999999999999776666 999999999999999999988999999999
Q ss_pred CCEEECcCCcceecCCC
Q 043924 150 LTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 150 L~~L~L~~N~lsG~iP~ 166 (167)
|++|+|++|+++ .||.
T Consensus 102 L~~L~Ls~N~l~-~lp~ 117 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISC 117 (562)
T ss_dssp CCEEECTTSCCC-EECS
T ss_pred CCEEECCCCcCC-ccCc
Confidence 999999999999 6775
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.05 E-value=2.6e-10 Score=98.65 Aligned_cols=93 Identities=26% Similarity=0.258 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh-Hhhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSVA 145 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l~ 145 (167)
.+++.|+|++|.+..+ .+..|..+++|++|++++|.+++.+|.. ..+.++++|++|++++|++++..| ..|+
T Consensus 73 ~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFL-----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTCCEEECTTCCCCEE-----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred CCCCEEECCCCcCccc-----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHh
Confidence 4566777777766533 3567889999999999999999876653 127899999999999999998654 6799
Q ss_pred cCCCCCEEECcCCcceecCCC
Q 043924 146 HLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG~iP~ 166 (167)
++++|++|++++|++++..|.
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSG
T ss_pred hCCCCCEEECCCCcCCeeCHH
Confidence 999999999999999987664
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.04 E-value=7e-10 Score=86.09 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=55.7
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+..+++|++|++++|.+++. + . +..+++|++|++++|++++..|..++++++|++|++++|++++..|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~-~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI-S-V----LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-G----GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred HhcCCCcCEEEccCCccCCC-h-h----hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 56677888888888888753 3 2 7788899999999999988888888999999999999999887654
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.03 E-value=2.2e-10 Score=88.07 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee--cCcccccccCCCCCCCEEeCcCCcCCc--hhhH
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC--VENEGIERLSRLSNLKMLDLSENLFNN--SILS 142 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~--ip~~~~~~~~~l~~L~~L~ls~N~l~g--~iP~ 142 (167)
.+++.|++++|.+..+. +..+..+++|++|++++|.+.+. ++.. ..+..+++|++|++++|+++. ..+.
T Consensus 145 ~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFS-----CEQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp SCCCEEEEECCSSCCCC-----TTSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred cCCCEEEeeCCCcchhh-----HHHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 35677777777765332 34566788888888888887653 2221 013556666666666666652 1111
Q ss_pred -hhhcCCCCCEEECcCCcceecCC
Q 043924 143 -SVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 143 -~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
.++.+++|++|+|++|++++.+|
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HHHhcCCCCCEEECCCCCCCccch
Confidence 24566666666666666666554
No 102
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.99 E-value=4e-10 Score=87.98 Aligned_cols=82 Identities=24% Similarity=0.292 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH--hh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS--SV 144 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~--~l 144 (167)
.+++.|++++|.+..+. +..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++ +|. .+
T Consensus 76 ~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~-l~~~~~~ 145 (353)
T 2z80_A 76 VNLQALVLTSNGINTIE-----EDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYKT-LGETSLF 145 (353)
T ss_dssp TTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSSCCSSCCHHH----HTTCTTCSEEECTTCCCSS-SCSSCSC
T ss_pred CCCCEEECCCCccCccC-----HhhcCCCCCCCEEECCCCcCCcCCHhH----hCCCccCCEEECCCCCCcc-cCchhhh
Confidence 45777788777765432 233555566666666666655322222 4555555555555555553 332 44
Q ss_pred hcCCCCCEEECcCC
Q 043924 145 AHLSSLTSLYLYSN 158 (167)
Q Consensus 145 ~~l~~L~~L~L~~N 158 (167)
.++++|++|++++|
T Consensus 146 ~~l~~L~~L~l~~n 159 (353)
T 2z80_A 146 SHLTKLQILRVGNM 159 (353)
T ss_dssp TTCTTCCEEEEEES
T ss_pred ccCCCCcEEECCCC
Confidence 55555555555555
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=5.3e-10 Score=91.35 Aligned_cols=67 Identities=22% Similarity=0.186 Sum_probs=58.0
Q ss_pred cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh-cCCCCCEEECcCCcceec
Q 043924 93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA-HLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~-~l~~L~~L~L~~N~lsG~ 163 (167)
..+++|++|++++|.+++..|.. ++.+++|++|++++|++++.+|..+. .+++|++|+|++|.+++.
T Consensus 117 ~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 117 SRGQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCCSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cccCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 34788999999999999887776 88999999999999999998888876 788888888888888764
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.98 E-value=1.4e-09 Score=83.03 Aligned_cols=62 Identities=39% Similarity=0.582 Sum_probs=34.4
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+..+++|++|++++|.+++. +. +..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~~----l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GG----GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEEccCCcCCcc--hh----hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 33455555555555555532 22 5556666666666666654433 556666666666666555
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.98 E-value=6.4e-10 Score=86.34 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=56.7
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
.+..+++|++|++++|.+++..|.. +..+++|++|++++|++++..| +..+++|++|++++|.|+
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCGGGHHH----HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhcCCCCCCEEECcCCcCCCcChhH----hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 3667899999999999999877776 8999999999999999998776 889999999999999986
No 106
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.98 E-value=2.4e-10 Score=87.88 Aligned_cols=87 Identities=21% Similarity=0.017 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCCCccccccCCccc--cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 69 VIQLDLSFIGNWDLKERYLNASLF--TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 69 v~~L~L~~~~l~~l~~~~l~~~~~--~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
++.|++++|.+.... +..+ ..+++|++|++++|.+++..+......+..+++|++|++++|++++..|..++.
T Consensus 93 L~~L~l~~n~l~~~~-----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 93 LKELTLEDLKITGTM-----PPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp CCEEEEESCCCBSCC-----CCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred eeEEEeeCCEeccch-----hhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 666777766654321 1112 344444444444444444322110001233444444444444444444444444
Q ss_pred CCCCCEEECcCCcc
Q 043924 147 LSSLTSLYLYSNRL 160 (167)
Q Consensus 147 l~~L~~L~L~~N~l 160 (167)
+++|++|+|++|++
T Consensus 168 l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 168 FPALTSLDLSDNPG 181 (310)
T ss_dssp CTTCCEEECCSCTT
T ss_pred CCCCCEEECCCCCC
Confidence 44444444444443
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.98 E-value=1.8e-09 Score=83.31 Aligned_cols=60 Identities=30% Similarity=0.331 Sum_probs=32.5
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+++|++|++++|.+++. |. ...+++|++|++++|++++ +|..+..+++|++|++++|+++
T Consensus 168 l~~L~~L~L~~N~l~~~-~~-----~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-KG-----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp TTTCCEEECTTSCCCEE-EC-----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC
T ss_pred cCcCCEEECCCCcCccc-cc-----ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc
Confidence 44555555555554432 22 2335566666666666664 3333666666666666666665
No 108
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.98 E-value=2.6e-10 Score=84.38 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=16.6
Q ss_pred EEeCcCC-cCCchhhHhhhcCCCCC-EEECcCCcce
Q 043924 128 MLDLSEN-LFNNSILSSVAHLSSLT-SLYLYSNRLE 161 (167)
Q Consensus 128 ~L~ls~N-~l~g~iP~~l~~l~~L~-~L~L~~N~ls 161 (167)
+|++++| ++++..+..|.++++|+ +|++++|+++
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 4444444 44433333445555555 5555555554
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.94 E-value=2.4e-09 Score=81.81 Aligned_cols=64 Identities=28% Similarity=0.423 Sum_probs=41.7
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~ 163 (167)
+..+++|++|++++|.+++ ++ . +..+++|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~~-~----l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred hccCCCCCEEECCCCcCCC-Ch-h----hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 4556666666666666654 22 2 56667777777777777654 4567777777777777777653
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.94 E-value=2.8e-09 Score=82.14 Aligned_cols=84 Identities=21% Similarity=0.094 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCccccccc-CCCCCCCEEeCcCCcCCchhhHhhhcC
Q 043924 69 VIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERL-SRLSNLKMLDLSENLFNNSILSSVAHL 147 (167)
Q Consensus 69 v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~-~~l~~L~~L~ls~N~l~g~iP~~l~~l 147 (167)
++.|++++|.+..+. +..+..+++|++|++++|.+++..|.. + ..+++|++|++++|++++. |. ...+
T Consensus 122 L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~-~~-~~~l 190 (317)
T 3o53_A 122 KKNIYLANNKITMLR-----DLDEGCRSRVQYLDLKLNEIDTVNFAE----LAASSDTLEHLNLQYNFIYDV-KG-QVVF 190 (317)
T ss_dssp CEEEECCSSCCCSGG-----GBCTGGGSSEEEEECTTSCCCEEEGGG----GGGGTTTCCEEECTTSCCCEE-EC-CCCC
T ss_pred CCEEECCCCCCCCcc-----chhhhccCCCCEEECCCCCCCcccHHH----HhhccCcCCEEECCCCcCccc-cc-cccc
Confidence 445555555444322 234556777888888888877665554 4 3677788888888887754 32 3357
Q ss_pred CCCCEEECcCCcceec
Q 043924 148 SSLTSLYLYSNRLEGN 163 (167)
Q Consensus 148 ~~L~~L~L~~N~lsG~ 163 (167)
++|++|++++|++++-
T Consensus 191 ~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 191 AKLKTLDLSSNKLAFM 206 (317)
T ss_dssp TTCCEEECCSSCCCEE
T ss_pred ccCCEEECCCCcCCcc
Confidence 7888888888888753
No 111
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.93 E-value=3.9e-09 Score=81.19 Aligned_cols=61 Identities=30% Similarity=0.345 Sum_probs=24.6
Q ss_pred cCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 93 TPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
..+++|++|++++|.+++ +|. +..+++|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 104 ~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITD-VTP-----LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp TTCTTCCEEECTTSCCCC-CGG-----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred cCCCCCCEEECCCCCCCC-chh-----hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 334444444444444443 221 3344444444444444433221 334444444444444433
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=1.7e-09 Score=81.47 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
.+++.|++++|.+..+.. +.. ++|++|++++|.+++ ++ . +..+++|++|++++|++++. | .+..
T Consensus 85 ~~L~~L~L~~N~l~~l~~-------~~~-~~L~~L~L~~N~l~~-~~-~----l~~l~~L~~L~Ls~N~i~~~-~-~l~~ 148 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNG-------IPS-ACLSRLFLDNNELRD-TD-S----LIHLKNLEILSIRNNKLKSI-V-MLGF 148 (263)
T ss_dssp SSCCEEECCSSCCSCCTT-------CCC-SSCCEEECCSSCCSB-SG-G----GTTCTTCCEEECTTSCCCBC-G-GGGG
T ss_pred CCCCEEECCCCccCCcCc-------ccc-CcccEEEccCCccCC-Ch-h----hcCcccccEEECCCCcCCCC-h-HHcc
Confidence 457777888777765432 111 455555555555543 22 1 44555555555555555432 2 3445
Q ss_pred CCCCCEEECcCCcce
Q 043924 147 LSSLTSLYLYSNRLE 161 (167)
Q Consensus 147 l~~L~~L~L~~N~ls 161 (167)
+++|++|++++|+++
T Consensus 149 l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 149 LSKLEVLDLHGNEIT 163 (263)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCcCc
Confidence 555555555555544
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.92 E-value=3.1e-09 Score=89.14 Aligned_cols=63 Identities=38% Similarity=0.573 Sum_probs=33.5
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+..+++|+.|+|++|.+++. +. +..+++|+.|+|++|++++..| +..+++|+.|+|++|+|++
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~~----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--TV----LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GG----GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ccCCCccCEEECCCCccCCc--hh----hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 34455555555555555542 22 5555555566666555555444 5555555555555555543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=5e-09 Score=78.96 Aligned_cols=81 Identities=25% Similarity=0.317 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
..+++.|++++|.+..+. . +..+++|++|++++|.+++ +|. +.. ++|++|++++|++++ +| .+.
T Consensus 62 l~~L~~L~L~~N~i~~~~------~-l~~l~~L~~L~L~~N~l~~-l~~-----~~~-~~L~~L~L~~N~l~~-~~-~l~ 125 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLS------P-LKDLTKLEELSVNRNRLKN-LNG-----IPS-ACLSRLFLDNNELRD-TD-SLI 125 (263)
T ss_dssp CTTCCEEECCSSCCCCCG------G-GTTCSSCCEEECCSSCCSC-CTT-----CCC-SSCCEEECCSSCCSB-SG-GGT
T ss_pred CCCCCEEECCCCccCCCh------h-hccCCCCCEEECCCCccCC-cCc-----ccc-CcccEEEccCCccCC-Ch-hhc
Confidence 356888899988887653 2 7789999999999999986 554 334 899999999999996 44 589
Q ss_pred cCCCCCEEECcCCccee
Q 043924 146 HLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG 162 (167)
++++|++|++++|++++
T Consensus 126 ~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 126 HLKNLEILSIRNNKLKS 142 (263)
T ss_dssp TCTTCCEEECTTSCCCB
T ss_pred CcccccEEECCCCcCCC
Confidence 99999999999999986
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.90 E-value=2e-09 Score=83.08 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=38.0
Q ss_pred CCCCccEEEcCCCceeee-cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC-cce
Q 043924 94 PFQQLESLYLEYNNIAGC-VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN-RLE 161 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~-ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N-~ls 161 (167)
.+++|++|++++|.+++. +|.. +..+++|++|++++|++++..|..++++++|++|++++| .++
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~----~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGI----LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHH----HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred cCCCCCEEEccCCCcCHHHHHHH----HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 456666666666666544 4544 555666666666666666555555666666666666665 444
No 116
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.90 E-value=4.7e-09 Score=80.75 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=20.6
Q ss_pred cCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 120 LSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 120 ~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 3444555555555555543222 4555555555555555553
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=4.5e-09 Score=88.14 Aligned_cols=67 Identities=27% Similarity=0.406 Sum_probs=48.4
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
.+..+++|+.|+|++|.+.+ ++ . +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++..|
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~-l~-~----l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISD-IN-G----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCC-CG-G----GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred hhccCCCCCEEEecCCCCCC-Cc-c----ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 35567777777777777765 33 2 67778888888888888764 457788888888888888876543
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.87 E-value=2.4e-10 Score=88.26 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=81.1
Q ss_pred CCcceeeEEEeCCCCCEEEEEcCCCCCCCccccccCCccccCC--CCccEEEcCCCceeeecCcccccccCCCCCCCEEe
Q 043924 53 DCCQWERVECSNTTGRVIQLDLSFIGNWDLKERYLNASLFTPF--QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLD 130 (167)
Q Consensus 53 ~~c~w~gv~C~~~~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l--~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ 130 (167)
-|..|.++.|+ ...++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|+
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~--------~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~ 99 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLH--------PDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMD 99 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCC--------HHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEE
T ss_pred HHHHHHHHhcC--chhheeeccccccCC--------HHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEE
Confidence 44579998886 456889999988764 2334555 8899999999999987665 56899999999
Q ss_pred CcCCcCCch-hhHhhhcCCCCCEEECcCCcceecCC
Q 043924 131 LSENLFNNS-ILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 131 ls~N~l~g~-iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+++|++++. +|..+.++++|++|++++|++++.+|
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 135 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence 999999976 89999999999999999999886544
No 119
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.86 E-value=6.6e-09 Score=84.04 Aligned_cols=63 Identities=21% Similarity=0.366 Sum_probs=46.8
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+..+++|++|++++|.+++. + . +..+++|++|++++|++++..| +.++++|+.|++++|++++
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~-~-~----l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV-S-S----LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC-G-G----GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCccCCEeECCCCccCCc-h-h----hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 44566677777777766653 2 2 7778888888888888887776 7788888888888888876
No 120
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.85 E-value=7e-10 Score=87.58 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=20.3
Q ss_pred CCCCCEEeCcCCcCCc----hhhHhh-hcCCCCCEEECcCCcceec
Q 043924 123 LSNLKMLDLSENLFNN----SILSSV-AHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 123 l~~L~~L~ls~N~l~g----~iP~~l-~~l~~L~~L~L~~N~lsG~ 163 (167)
+++|++|++++|++++ .+|..+ .++++|++|++++|++++.
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 4455555555555554 244444 3445555555555555443
No 121
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.84 E-value=2.7e-09 Score=80.92 Aligned_cols=67 Identities=25% Similarity=0.333 Sum_probs=56.2
Q ss_pred CCCCccEEEcCCCceee--ecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCC--CCCEEECcCCcceecCCC
Q 043924 94 PFQQLESLYLEYNNIAG--CVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLS--SLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g--~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~lsG~iP~ 166 (167)
++++|+.|+|++|.+++ .+|.. +..+++|++|+|++|+|++. ..+..+. +|++|+|++|.+++++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~----~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSI----VQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTH----HHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccchhH----HhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 47899999999999998 56665 77899999999999999975 3344444 999999999999998773
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.84 E-value=7.9e-09 Score=83.78 Aligned_cols=78 Identities=19% Similarity=0.153 Sum_probs=55.9
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH 146 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~ 146 (167)
.+++.|++++|.++.+ .++.+++|++|++++|.+++. | ++.+++|++|++++|++++ +| +++
T Consensus 64 ~~L~~L~Ls~n~l~~~--------~~~~l~~L~~L~Ls~N~l~~~-~------~~~l~~L~~L~L~~N~l~~-l~--~~~ 125 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL--------DLSQNTNLTYLACDSNKLTNL-D------VTPLTKLTYLNCDTNKLTK-LD--VSQ 125 (457)
T ss_dssp TTCSEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C------CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred CCCCEEEccCCcCCeE--------ccccCCCCCEEECcCCCCcee-e------cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence 4566666666665533 156677788888888877763 2 6778888888888888876 44 778
Q ss_pred CCCCCEEECcCCccee
Q 043924 147 LSSLTSLYLYSNRLEG 162 (167)
Q Consensus 147 l~~L~~L~L~~N~lsG 162 (167)
+++|++|++++|++++
T Consensus 126 l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE 141 (457)
T ss_dssp CTTCCEEECTTSCCSC
T ss_pred CCcCCEEECCCCccce
Confidence 8888888888888876
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.84 E-value=6.6e-09 Score=84.05 Aligned_cols=66 Identities=26% Similarity=0.314 Sum_probs=46.1
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+..+++|++|++++|.+++..| +..+++|++|++++|++++. ..+.++++|++|++++|+++|.+|
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred hcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 4456666777777776665433 45677777777777777764 357778888888888888877655
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=2.7e-11 Score=87.49 Aligned_cols=65 Identities=32% Similarity=0.452 Sum_probs=43.0
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh-HhhhcCCCCCEEECcCCcceecCC
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL-SSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP-~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+++|++|++++|.+++ +| . +..+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~----~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-G----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-H----HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-c----cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 3455566666665554 33 2 5666777777777777775322 467788888888888888876654
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.81 E-value=1.2e-08 Score=82.67 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=42.1
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCccee
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
+..+++|++|++++|.+++ +|.. + .+|++|++++|++++ +| .++++++|++|++++|++++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~----~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDL----P---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCC----C---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred cCCCCCCCEEECCCCcCcc-cCCC----c---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 5666777777777777764 5543 2 367777777777775 55 47777888888888887775
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.79 E-value=1.7e-09 Score=85.42 Aligned_cols=92 Identities=20% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCcee----eecCcccccccCCCCCCCEEeCcCCcCCch---
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIA----GCVENEGIERLSRLSNLKMLDLSENLFNNS--- 139 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~----g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~--- 139 (167)
.+++.|++++|.+...+...+.+..+..+++|++|++++|.++ +.+|.. +..+++|++|+|++|++++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~----l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA----LKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH----GGGCTTCCEEECTTCCCCHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH----HccCCCcCEEECCCCCCchhhHH
Confidence 4799999999988632211122225678999999999999996 667776 89999999999999999976
Q ss_pred -hhHhhhc--CCCCCEEECcCCccee
Q 043924 140 -ILSSVAH--LSSLTSLYLYSNRLEG 162 (167)
Q Consensus 140 -iP~~l~~--l~~L~~L~L~~N~lsG 162 (167)
+|..+.. +++|++|+|++|++++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCH
Confidence 6777744 9999999999999987
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.79 E-value=1.8e-08 Score=81.73 Aligned_cols=62 Identities=29% Similarity=0.275 Sum_probs=42.2
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceec
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~ 163 (167)
+..+++|++|++++|.+++. . ++.+++|++|++++|++++ +| ++.+++|++|++++|+++|.
T Consensus 187 l~~l~~L~~L~l~~N~l~~~---~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKL---D----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCC---C----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred cccCCCCCEEECcCCcCCee---c----cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 44566666666666666653 2 5667777777777777776 55 66777777777777777753
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.77 E-value=9e-11 Score=84.72 Aligned_cols=83 Identities=23% Similarity=0.225 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
-.+++.|++++|.+..+ + .+..+++|++|++++|.++ .+|.. +..+++|++|++++|++++ +| .+.
T Consensus 47 l~~L~~L~ls~n~l~~l------~-~~~~l~~L~~L~l~~n~l~-~l~~~----~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKI------S-SLSGMENLRILSLGRNLIK-KIENL----DAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp TTTCSEEECSEEEESCC------C-CHHHHTTCCEEEEEEEEEC-SCSSH----HHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred CCCCCEEECCCCCCccc------c-ccccCCCCCEEECCCCCcc-cccch----hhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 35688999999887654 2 4677899999999999998 67776 7778899999999999996 56 588
Q ss_pred cCCCCCEEECcCCccee
Q 043924 146 HLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 146 ~l~~L~~L~L~~N~lsG 162 (167)
.+++|++|++++|++++
T Consensus 113 ~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHHHSSEEEESEEECCC
T ss_pred cCCCCCEEECCCCcCCc
Confidence 99999999999999884
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.77 E-value=6.5e-09 Score=86.66 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=43.1
Q ss_pred CCccEEEcCCCceeeecCcccccccCCCCCC-------CEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCCC
Q 043924 96 QQLESLYLEYNNIAGCVENEGIERLSRLSNL-------KMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNIDV 166 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L-------~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP~ 166 (167)
++|++|++++|.++ .+|. +.. +| ++|++++|+|+ .+|..+.++++|++|+|++|+++|.+|.
T Consensus 180 ~~L~~L~Ls~N~L~-~lp~-----~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLPA-----VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp TTCCEEECCSSCCS-SCCC-----CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCCEEECcCCCCC-chhh-----HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 45555555555555 3443 121 45 88888888888 5788888899999999999999987763
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.77 E-value=5.5e-09 Score=84.63 Aligned_cols=64 Identities=31% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCc--hhhHhhhcC-------------CCCCEEECcCCc
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNN--SILSSVAHL-------------SSLTSLYLYSNR 159 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g--~iP~~l~~l-------------~~L~~L~L~~N~ 159 (167)
+++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..++++ ++|++|++++|+
T Consensus 336 ~~~L~~L~L~~N~l~-~lp~-------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 336 PPRLERLIASFNHLA-EVPE-------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCcCCEEECCCCccc-cccc-------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 456666677666666 3443 35778888888888888 778877777 788888888888
Q ss_pred cee--cCCC
Q 043924 160 LEG--NIDV 166 (167)
Q Consensus 160 lsG--~iP~ 166 (167)
++| .||+
T Consensus 408 l~~~~~iP~ 416 (454)
T 1jl5_A 408 LREFPDIPE 416 (454)
T ss_dssp ---------
T ss_pred CCccccchh
Confidence 887 7775
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.75 E-value=1.2e-08 Score=85.80 Aligned_cols=62 Identities=26% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcceecCC
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLEGNID 165 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~lsG~iP 165 (167)
+++|++|++++|.++ .+|. .+++|++|++++|+++ .+|..+.++++|+.|+|++|+++|.+|
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~-------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM-------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC-------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc-------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 455666666666665 3442 4578999999999999 788899999999999999999998765
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.71 E-value=2.7e-09 Score=83.73 Aligned_cols=90 Identities=26% Similarity=0.178 Sum_probs=53.5
Q ss_pred CEEEEEcCCCCCCCccccccCCccccCC-----CCccEEEcCCCceeeecCcccccccCCC-CCCCEEeCcCCcCCchhh
Q 043924 68 RVIQLDLSFIGNWDLKERYLNASLFTPF-----QQLESLYLEYNNIAGCVENEGIERLSRL-SNLKMLDLSENLFNNSIL 141 (167)
Q Consensus 68 ~v~~L~L~~~~l~~l~~~~l~~~~~~~l-----~~L~~L~Ls~n~l~g~ip~~~~~~~~~l-~~L~~L~ls~N~l~g~iP 141 (167)
+++.|+|++|.+...+. ..+..+ ++|++|++++|.+++..+......+..+ ++|++|++++|++++..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNS-----DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCH-----HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ceeEEECcCCCCCHHHH-----HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 56677777776543221 112222 6777777777777655444311113344 677788888887776555
Q ss_pred Hhhhc-----CCCCCEEECcCCccee
Q 043924 142 SSVAH-----LSSLTSLYLYSNRLEG 162 (167)
Q Consensus 142 ~~l~~-----l~~L~~L~L~~N~lsG 162 (167)
..+.. .++|++|+|++|+++.
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCH
Confidence 54432 2578888888887763
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.60 E-value=7.8e-09 Score=86.95 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCcceeeEEE------eCCCCCEEEEEcCCCCCCCccccc--------cCCc----cccCCCCccEEEcC
Q 043924 43 HHWVDDEGATDCCQWERVEC------SNTTGRVIQLDLSFIGNWDLKERY--------LNAS----LFTPFQQLESLYLE 104 (167)
Q Consensus 43 ~~W~~~~~~~~~c~w~gv~C------~~~~~~v~~L~L~~~~l~~l~~~~--------l~~~----~~~~l~~L~~L~Ls 104 (167)
..|.... ++|.|.|..| ......++.++++++.++.++... +... ....+++|++|+++
T Consensus 13 ~~W~~~~---~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls 89 (622)
T 3g06_A 13 SAWRRAA---PAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVS 89 (622)
T ss_dssp HHHHHTC---CGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCCCCTTCCEEEEC
T ss_pred HHHHhcC---CcchhccccccCcccccccCCCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCCcCCCCCEEEcC
Confidence 4565555 7888865321 111234667777777665443210 0000 00124455666666
Q ss_pred CCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 105 YNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 105 ~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+|.++ .+|. .+++|++|++++|++++ +|. .+++|+.|++++|+++
T Consensus 90 ~N~l~-~lp~-------~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~ 134 (622)
T 3g06_A 90 GNQLT-SLPV-------LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT 134 (622)
T ss_dssp SCCCS-CCCC-------CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCcCC-cCCC-------CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC
Confidence 66554 2332 34556666666666654 333 3455555555555555
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.56 E-value=1.5e-08 Score=81.29 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=54.4
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCC-CCCCCEEeCcCCcCCc----hhhHhhhcCCCCCEEECcCCcceec
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSR-LSNLKMLDLSENLFNN----SILSSVAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~-l~~L~~L~ls~N~l~g----~iP~~l~~l~~L~~L~L~~N~lsG~ 163 (167)
+..+++|++|++++|.+++..+......+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++.
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3446888899999998876544331111222 6789999999999986 7888899999999999999998753
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.54 E-value=7.2e-08 Score=73.07 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhh----
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSIL---- 141 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP---- 141 (167)
-.+++.|+|++|.+..+... +..+..+++|+.|+|++|.+++. .+ ...+..+ +|++|+|++|.+.+.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l---~~~~~~l~~L~~L~Ls~N~i~~~--~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSGNELKSE--RE-LDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGG---TTHHHHSTTCCEEECTTSCCCSG--GG-GGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred CCCCCEEECCCCCCCCCccc---hhHHhhCCCCCEEECCCCccCCc--hh-hhhcccC-CcceEEccCCcCccccCcchh
Confidence 35799999999999876432 23456799999999999999864 22 1114444 99999999999998765
Q ss_pred ---HhhhcCCCCCEEE
Q 043924 142 ---SSVAHLSSLTSLY 154 (167)
Q Consensus 142 ---~~l~~l~~L~~L~ 154 (167)
..+..+++|+.||
T Consensus 242 y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHCTTCCEES
T ss_pred HHHHHHHHCcccCeEC
Confidence 3478899999886
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.50 E-value=6.3e-08 Score=75.86 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCC-CccEEEcCCCceeeecCcccccccCCC-----CCCCEEeCcCCcCCch
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQ-QLESLYLEYNNIAGCVENEGIERLSRL-----SNLKMLDLSENLFNNS 139 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~-~L~~L~Ls~n~l~g~ip~~~~~~~~~l-----~~L~~L~ls~N~l~g~ 139 (167)
...++.|++++|.++..+...+ ...+..++ +|++|++++|.+++..+.. +..+ ++|++|++++|++++.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVEL-IQAFANTPASVTSLNLSGNSLGFKNSDE----LVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHH-HHHHHTCCTTCCEEECCSSCGGGSCHHH----HHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CCCceEEEccCCCCChHHHHHH-HHHHHhCCCceeEEECcCCCCCHHHHHH----HHHHHhccCCCccEEECcCCcCChH
Confidence 4559999999998865432100 03456677 8999999999998766655 5443 8999999999999987
Q ss_pred hhHhhhc----C-CCCCEEECcCCcceecC
Q 043924 140 ILSSVAH----L-SSLTSLYLYSNRLEGNI 164 (167)
Q Consensus 140 iP~~l~~----l-~~L~~L~L~~N~lsG~i 164 (167)
.+..+.. + ++|++|++++|++++..
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 7775544 4 89999999999998643
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.43 E-value=2.6e-08 Score=79.87 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=35.2
Q ss_pred CCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCchhhHhhhc-----CCCCCEEECcCCccee
Q 043924 96 QQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNSILSSVAH-----LSSLTSLYLYSNRLEG 162 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~-----l~~L~~L~L~~N~lsG 162 (167)
++|++|++++|.+++. ++.. +..+++|++|++++|++++..+..+.. .++|++|++++|++++
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~----l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSV----LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHH----HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ccceeeEcCCCCCchHHHHHHHHH----HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 3555555555555433 2222 455566666666666666554444432 5566677776666664
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=6.1e-08 Score=76.68 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=41.2
Q ss_pred cCCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924 93 TPFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls 161 (167)
...++|++|+|++|.+... ++.. +...++|++|+|++|+++.. ++..+...++|++|+|++|.|+
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~----L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQ----LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHH----GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHH----HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 3456677777777776532 2222 55566777777777777642 3444556677777777777765
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=74.90 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=45.1
Q ss_pred CCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCccee
Q 043924 95 FQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
.+.|++|+|++|.++.. ++.. +...++|++|+|++|+++.. ++..+...++|++|+|++|.++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~----L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEG----LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHH----HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred CCccceeeCCCCCCChHHHHHHHHH----HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 46677888888877542 2222 56677888888888888642 45666777888888888888763
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.35 E-value=7.4e-07 Score=69.48 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred EEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhH-hhhcCCC
Q 043924 71 QLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILS-SVAHLSS 149 (167)
Q Consensus 71 ~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~-~l~~l~~ 149 (167)
.++.++++++.++. .+ .+++++|+|++|+++. +|+. .|.++++|++|+|++|++.+.+|. .|.++++
T Consensus 13 ~v~C~~~~Lt~iP~------~l--~~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~ 80 (350)
T 4ay9_X 13 VFLCQESKVTEIPS------DL--PRNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80 (350)
T ss_dssp EEEEESTTCCSCCT------TC--CTTCSEEEEESCCCSE-ECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTT
T ss_pred EEEecCCCCCccCc------Cc--CCCCCEEEccCCcCCC-cCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchh
Confidence 46778888876532 12 3579999999999984 5643 289999999999999999887775 5788998
Q ss_pred CCE-EECcCCcceecCC
Q 043924 150 LTS-LYLYSNRLEGNID 165 (167)
Q Consensus 150 L~~-L~L~~N~lsG~iP 165 (167)
++. +.+++|++++-.|
T Consensus 81 l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINP 97 (350)
T ss_dssp CCEEEEEEETTCCEECT
T ss_pred hhhhhcccCCcccccCc
Confidence 875 6677898885434
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=6.2e-07 Score=64.03 Aligned_cols=90 Identities=19% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeC--cCCcCCch-
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDL--SENLFNNS- 139 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~l--s~N~l~g~- 139 (167)
..++.|+|++|.+.+-+...+ ...+...+.|++|+|++|.+... +... +...+.|++|+| ++|.++..
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l-~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~----L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFAL-AEMLKVNNTLKSLNVESNFISGSGILALVEA----LQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHH-HHHHHHCSSCCEEECCSSCCCHHHHHHHHHG----GGGCSSCCEEECCCCSSCCCHHH
T ss_pred CCcCEEECcCCCCChHHHHHH-HHHHHhCCCcCEEECcCCcCCHHHHHHHHHH----HHhCCCceEEEecCCCCCCCHHH
Confidence 456677777776643211111 11123346778888888877643 2222 666677888888 77887653
Q ss_pred ---hhHhhhcCCCCCEEECcCCcce
Q 043924 140 ---ILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 140 ---iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+...+...++|++|+|++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677888888888764
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=2.5e-06 Score=65.88 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=68.6
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCC-EEeCcCCcCCchhhHhhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLK-MLDLSENLFNNSILSSVA 145 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~-~L~ls~N~l~g~iP~~l~ 145 (167)
..++.++++++.+..++ ...|..+++|+.+++.+| +. .|+.. .|.++++|+ .+++.+ +++..-+..|.
T Consensus 226 ~~L~~l~L~~n~i~~I~-----~~aF~~~~~L~~l~l~~n-i~-~I~~~---aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIP-----DFTFAQKKYLLKIKLPHN-LK-TIGQR---VFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp TTCCEEECTTBCCCEEC-----TTTTTTCTTCCEEECCTT-CC-EECTT---TTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred CCCeEEECCCCCcceec-----HhhhhCCCCCCEEECCcc-cc-eehHH---HhhCChhccEEEEEcc-cceEEchhhhh
Confidence 46889999998887554 456888999999999998 55 46654 389999999 999988 77755567899
Q ss_pred cCCCCCEEECcCCcce
Q 043924 146 HLSSLTSLYLYSNRLE 161 (167)
Q Consensus 146 ~l~~L~~L~L~~N~ls 161 (167)
++++|+.+++++|+++
T Consensus 295 ~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 295 GCDNLRYVLATGDKIT 310 (329)
T ss_dssp TCTTEEEEEECSSCCC
T ss_pred CCccCCEEEeCCCccC
Confidence 9999999999988887
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=6.2e-07 Score=64.01 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCC-CCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----h
Q 043924 66 TGRVIQLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----I 140 (167)
Q Consensus 66 ~~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----i 140 (167)
...++.|+|+++ .+.+-+...+ ...+...++|++|+|++|.+...--......+...+.|++|+|++|+++.. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 567999999998 8753221111 122455789999999999996421111111256668899999999999864 5
Q ss_pred hHhhhcCCCCCEEEC--cCCccee
Q 043924 141 LSSVAHLSSLTSLYL--YSNRLEG 162 (167)
Q Consensus 141 P~~l~~l~~L~~L~L--~~N~lsG 162 (167)
...+...++|++|+| ++|.++.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHhCCCceEEEecCCCCCCCH
Confidence 667788899999999 8898863
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.02 E-value=2.7e-06 Score=70.18 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=52.9
Q ss_pred CCCCccEEEcCCCceee-ecCcccccccCCCCCCCEEeCcCCcCCch-hhHhhhcCCCCCEEECcCCcceec
Q 043924 94 PFQQLESLYLEYNNIAG-CVENEGIERLSRLSNLKMLDLSENLFNNS-ILSSVAHLSSLTSLYLYSNRLEGN 163 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g-~ip~~~~~~~~~l~~L~~L~ls~N~l~g~-iP~~l~~l~~L~~L~L~~N~lsG~ 163 (167)
.+++|++|++++|.+++ .++.. +..+++|++|++++|.|++. ++..+..+++|++|+|++|++++.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEF----SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHH----HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred hCccceEeeccCCCCCHHHHHHH----HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 36788999999998876 34443 67889999999999998765 555567899999999999998754
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.79 E-value=1.4e-05 Score=65.79 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCCCccEEEcCCCceeee----cCcccccccCCCCCCCEEeCcCCcCC----chhhHhhhcCCCCCEEECcCCccee
Q 043924 94 PFQQLESLYLEYNNIAGC----VENEGIERLSRLSNLKMLDLSENLFN----NSILSSVAHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 94 ~l~~L~~L~Ls~n~l~g~----ip~~~~~~~~~l~~L~~L~ls~N~l~----g~iP~~l~~l~~L~~L~L~~N~lsG 162 (167)
.+++|++|++++|.+++. ++.. +..+++|++|++++|+++ +.++..+.++++|++|++++|.+++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~----~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHEL----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHH----HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHHHH----HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 568888888888888655 3333 456788888888888887 4566667788888888888887664
No 146
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.70 E-value=8.1e-05 Score=50.11 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=37.8
Q ss_pred EEEcCCCCCC--CccccccCCccccCC-CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCC
Q 043924 71 QLDLSFIGNW--DLKERYLNASLFTPF-QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFN 137 (167)
Q Consensus 71 ~L~L~~~~l~--~l~~~~l~~~~~~~l-~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~ 137 (167)
.++.++++++ .+.. .+ .+|++|+|++|.|+. +|.. .|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~---------~lp~~l~~L~Ls~N~l~~-l~~~---~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT---------AFPVDTTELVLTGNNLTA-LPPG---LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS---------CCCTTCSEEECTTSCCSS-CCTT---TGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC---------CCCcCCCEEECCCCcCCc-cChh---hhhhccccCEEEecCCCee
Confidence 6778888776 4431 12 357888888888874 4543 2677888888888888774
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=3e-05 Score=55.07 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCCCCCccccccCCccccCCCCccEEEcCCCc-eeeecCcccccccCCC----CCCCEEeCcCC-cCCch
Q 043924 66 TGRVIQLDLSFIGNWDLKERYLNASLFTPFQQLESLYLEYNN-IAGCVENEGIERLSRL----SNLKMLDLSEN-LFNNS 139 (167)
Q Consensus 66 ~~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~-l~g~ip~~~~~~~~~l----~~L~~L~ls~N-~l~g~ 139 (167)
.-+++.||+++..+++.+- ..+..+++|++|+|+++. ++..--.. +..+ ++|++|+|+++ +++..
T Consensus 60 ~~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~----L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLER----LSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHH----HHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHH----HHhcccccCCCCEEEcCCCCcCCHH
Confidence 3469999999998765432 235679999999999985 65432122 5554 47999999997 48764
Q ss_pred hhHhhhcCCCCCEEECcCCc
Q 043924 140 ILSSVAHLSSLTSLYLYSNR 159 (167)
Q Consensus 140 iP~~l~~l~~L~~L~L~~N~ 159 (167)
==..+.++++|++|+|++..
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 44568899999999998864
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.00015 Score=55.72 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCCCCCccccccCCccccCCCCcc-EEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhh
Q 043924 67 GRVIQLDLSFIGNWDLKERYLNASLFTPFQQLE-SLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVA 145 (167)
Q Consensus 67 ~~v~~L~L~~~~l~~l~~~~l~~~~~~~l~~L~-~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~ 145 (167)
.+++.|++.++ +..++ ...|.++++|+ .+++.+ .++ .|++. .|.++++|+.++++.|+++..-+..|.
T Consensus 250 ~~L~~l~l~~n-i~~I~-----~~aF~~~~~L~~~l~l~~-~l~-~I~~~---aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIG-----QRVFSNCGRLAGTLELPA-SVT-AIEFG---AFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TTCCEEECCTT-CCEEC-----TTTTTTCTTCCEEEEECT-TCC-EECTT---TTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred CCCCEEECCcc-cceeh-----HHHhhCChhccEEEEEcc-cce-EEchh---hhhCCccCCEEEeCCCccCccchhhhc
Confidence 36778888876 55443 56788999999 999988 666 35433 299999999999999999976677899
Q ss_pred cCCCCCEEEC
Q 043924 146 HLSSLTSLYL 155 (167)
Q Consensus 146 ~l~~L~~L~L 155 (167)
++++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 9999999874
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.51 E-value=2.4e-05 Score=61.67 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=38.9
Q ss_pred CCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----hhHhhhcCCCCCEEECcCCcce
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----ILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~ls 161 (167)
+++|++|++.+|.+.+..+.... ....+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 56666666666666543322200 113466777777777777653 3333455677777777777665
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.42 E-value=3.5e-05 Score=63.41 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=33.1
Q ss_pred CCCccEEEcCCCceeeecCccccccc-CCCCCCCEEeCcCCcCCchhhH-hhhcCCCCCEEECcCCcce
Q 043924 95 FQQLESLYLEYNNIAGCVENEGIERL-SRLSNLKMLDLSENLFNNSILS-SVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 95 l~~L~~L~Ls~n~l~g~ip~~~~~~~-~~l~~L~~L~ls~N~l~g~iP~-~l~~l~~L~~L~L~~N~ls 161 (167)
+++|++|++++|.+++..+.. + ..+++|++|++++|.+++..+. ....+++|++|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~----l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHH----VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHH----HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHH----HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 455556666655554432222 2 4456666666666666443333 2334566666666666553
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.35 E-value=6.1e-05 Score=62.01 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=46.7
Q ss_pred cCCCCccEEEcCCCceeeecCcccccccCC-CCCCCEEeCcCCcCCchhhHhh-hcCCCCCEEECcCCccee
Q 043924 93 TPFQQLESLYLEYNNIAGCVENEGIERLSR-LSNLKMLDLSENLFNNSILSSV-AHLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 93 ~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~-l~~L~~L~ls~N~l~g~iP~~l-~~l~~L~~L~L~~N~lsG 162 (167)
..+++|++|++++ .+++..+.. +.. +++|++|++++|.+++..+..+ ..+++|++|+|++|.+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~----l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEY----IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHH----HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred hhCCCccEEeecC-cccHHHHHH----HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 3466777777765 454433333 444 7889999999999987665555 678999999999998854
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.0016 Score=43.66 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=39.5
Q ss_pred cEEEcCCCcee-eecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 99 ESLYLEYNNIA-GCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 99 ~~L~Ls~n~l~-g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
..++.+++.++ ..+|.. + .++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~----l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA----F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC----C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC----C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35677777775 345543 2 245788888888888655566778888888888888765
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.56 E-value=0.0059 Score=48.46 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=33.4
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
.|..+++|+.+++.+ .+. .|+.. .|.++++|+.+++..| ++..-+..|.++ +|+.+++.+|.+.
T Consensus 295 aF~~c~~L~~l~l~~-~i~-~I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE-SIR-ILGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTTTCTTCCEECCCT-TCC-EECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred HhhCCccCCeEEeCC-ceE-EEhhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 344555555555552 233 23322 2556666666666443 443334456666 6777777666543
No 154
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.51 E-value=0.0015 Score=47.11 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=7.4
Q ss_pred CCccEEEcCCCcee
Q 043924 96 QQLESLYLEYNNIA 109 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~ 109 (167)
+.|++|+|++|.|.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 44555555555554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.46 E-value=0.0021 Score=45.47 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=47.0
Q ss_pred CCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCc-CCchhhHhhhcC----CCCCEEECcCCc-ce
Q 043924 96 QQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENL-FNNSILSSVAHL----SSLTSLYLYSNR-LE 161 (167)
Q Consensus 96 ~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~-l~g~iP~~l~~l----~~L~~L~L~~N~-ls 161 (167)
-.|+.||++++.++.. +...+..+++|++|+|+++. ++..-=..++.+ ++|++|+|+++. +|
T Consensus 61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 4699999999987643 22237899999999999985 776444556665 479999999874 55
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.31 E-value=0.0039 Score=44.88 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCC-CCCCccccccCCccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCch----h
Q 043924 66 TGRVIQLDLSFI-GNWDLKERYLNASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNS----I 140 (167)
Q Consensus 66 ~~~v~~L~L~~~-~l~~l~~~~l~~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~----i 140 (167)
...++.|+|+++ .+.+-+...+ ...+..-+.|+.|+|++|.+...--....+.+..-+.|++|+|++|+|... +
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 567899999985 6643211001 112344578999999999997432222111244557899999999999853 3
Q ss_pred hHhhhcCCCCCEEECcCC
Q 043924 141 LSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 141 P~~l~~l~~L~~L~L~~N 158 (167)
-+.+..-+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 345555677999999865
No 157
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.11 E-value=0.0048 Score=48.42 Aligned_cols=69 Identities=19% Similarity=0.155 Sum_probs=45.5
Q ss_pred CCCCccEEEcCC--CceeeecCc-cccccc--CCCCCCCEEeCcCCcCCchhhHhhh---cCCCCCEEECcCCccee
Q 043924 94 PFQQLESLYLEY--NNIAGCVEN-EGIERL--SRLSNLKMLDLSENLFNNSILSSVA---HLSSLTSLYLYSNRLEG 162 (167)
Q Consensus 94 ~l~~L~~L~Ls~--n~l~g~ip~-~~~~~~--~~l~~L~~L~ls~N~l~g~iP~~l~---~l~~L~~L~L~~N~lsG 162 (167)
.+++|+.|+|+. |...|.... .....+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+++
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 578888888753 222121000 000002 3578999999999999876655554 57899999999999875
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.05 E-value=0.01 Score=47.06 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=47.9
Q ss_pred CccccCCCCccEEEcCCCcee----eecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924 89 ASLFTPFQQLESLYLEYNNIA----GCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~----g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N 158 (167)
...|..+++|+.+++.+|.+. ..|+.. .|.++++|+.+++. |.++-.-...|.++++|+.+.+..|
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 455778888999988887764 124433 37888899999988 4566444557888899999988655
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.57 E-value=0.1 Score=40.74 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=36.3
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N 158 (167)
.|.++.+|+.+++..+ ++ .|+.. .|.++++|+.+++..| ++..-...|.++++|+.+++..+
T Consensus 315 aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VE-EIGKR---SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhcCCCCCCEEEeCCc-cc-EEhHH---hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 3555666666666543 33 34332 2667777777777655 54333345777777777776544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.50 E-value=0.21 Score=38.93 Aligned_cols=64 Identities=14% Similarity=0.231 Sum_probs=41.2
Q ss_pred ccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCc
Q 043924 90 SLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNR 159 (167)
Q Consensus 90 ~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ 159 (167)
..|.++.+|+.+++..+ ++ .|... .|.++++|+.+.+..+ ++..-...|.++++|+.+++.+|.
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~-~I~~~---aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-IT-QILDD---AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECTT---TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred eeecCCCCcCEEEeCCc-cc-EehHh---HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 34666777777777654 33 34332 2777888888888644 543334568888888888887764
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.94 E-value=0.14 Score=39.55 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=35.6
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYS 157 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~ 157 (167)
.|..+++|+.+.+.++.++ .|+.. .|.++.+|+.++|..+ ++-.-...|.++++|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~-~I~~~---aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE-TLEPR---VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccc-eehhh---hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 3555666777777666655 23332 2667777777777543 4422234566677777666543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.83 E-value=0.29 Score=38.18 Aligned_cols=65 Identities=15% Similarity=0.245 Sum_probs=40.9
Q ss_pred CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCCcce
Q 043924 89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSNRLE 161 (167)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ls 161 (167)
...|.++.+|+.+.+..+ ++ .|... .|.++++|+.+++.+|... -..+....+|+.+.+..|.+.
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~-~I~~~---aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VT-KIPES---AFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CC-BCCGG---GGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred HhHhhCCCCCCEEEECcc-cC-EEhHh---HhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 345888999999999755 44 45543 3899999999999987643 246778889999998877654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.76 E-value=0.58 Score=36.05 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=42.6
Q ss_pred ccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924 92 FTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 92 ~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N 158 (167)
|..+..|+.+.+..+ +. .++.. .|.++++|+.+++.++.++..-...|.++.+|+.+.|..+
T Consensus 259 F~~~~~l~~i~l~~~-i~-~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VK-TVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTCTTCCEEEECCC-CS-EECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cceeehhcccccccc-ce-ecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 445556666666443 22 23332 2788899999999888887444567889999999998654
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=88.20 E-value=1 Score=35.05 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=44.2
Q ss_pred cccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCCcCCchhhHhhhcCCCCCEEECcCC
Q 043924 91 LFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSENLFNNSILSSVAHLSSLTSLYLYSN 158 (167)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N~l~g~iP~~l~~l~~L~~L~L~~N 158 (167)
.|..+.+|+.+.+..+ +. .|+.. .|.++++|+.+++..+ ++..-...|.++++|+.+.+..|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~---aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEE---AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTT---TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccccccc-cc-eechh---hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 4556778888887654 43 34433 2888999999999754 65333567889999999998766
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=37.64 E-value=7.6 Score=16.86 Aligned_cols=9 Identities=33% Similarity=1.158 Sum_probs=7.0
Q ss_pred CCcceeeEE
Q 043924 53 DCCQWERVE 61 (167)
Q Consensus 53 ~~c~w~gv~ 61 (167)
..|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 579999864
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.56 E-value=59 Score=19.93 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=28.8
Q ss_pred CccccCCCCccEEEcCCCceeeecCcccccccCCCCCCCEEeCcCC
Q 043924 89 ASLFTPFQQLESLYLEYNNIAGCVENEGIERLSRLSNLKMLDLSEN 134 (167)
Q Consensus 89 ~~~~~~l~~L~~L~Ls~n~l~g~ip~~~~~~~~~l~~L~~L~ls~N 134 (167)
...|.+++.|+.+.+..+ ++ .|-.. .|.++.+|+.+.+...
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~-~Ig~~---aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IG-LLYDG---MFSGCTALEKLILTGE 53 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SS-CCCTT---SSTTCTTCCCEEECCS
T ss_pred HHHhcCCCCCcEEEcCCc-hh-eEcHH---HHhccCCccEEEEcCC
Confidence 456888999999988654 22 23322 2888999999988653
Done!