BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043926
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
Domain
Length = 168
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
Query: 55 REKEVWENAIKKLRRILHPSIQEVLKLSYDGL---DDKEKNIFLD 96
R V E+A+KKL+ + S++ VL +S DGL DDK K++ +D
Sbjct: 58 RGMHVCEDAVKKLKAMGRKSVKSVLWVSADGLRVVDDKTKDLLVD 102
>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine
Peptide, Nmr, Ensemble Of Structures
Length = 160
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 44 ALKVLGCF-LFE-REKEVWENAIKKLRRILHPSIQEVLKLSYDGL---DDKEKNIFLD 96
++K LGC +FE R +V E A+K LR+ ++ +L +S DGL DD+ K + +D
Sbjct: 33 SVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD 90
>pdb|1DDM|A Chain A, Solution Structure Of The Numb Ptb Domain Complexed To A
Nak Peptide
Length = 135
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 44 ALKVLGCF-LFE-REKEVWENAIKKLRRILHPSIQEVLKLSYDGL---DDKEKNIFLD 96
++K LGC +FE R +V E A+K LR+ ++ +L +S DGL DD+ K + +D
Sbjct: 18 SVKYLGCVEVFESRGMQVCEEALKVLRQSRRRPVRGLLHVSGDGLRVVDDETKGLIVD 75
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 31.2 bits (69), Expect = 0.26, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ L N PD EL+R+ YA G ++ E E+ +WEN + R L+
Sbjct: 362 YERNELAPNKPD--ERELARRRESYAGG----------YVKEPERGLWENIVYLDFRSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 31.2 bits (69), Expect = 0.26, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ L N PD EL+R+ YA G ++ E E+ +WEN + R L+
Sbjct: 362 YERNELAPNKPD--ERELARRRESYAGG----------YVKEPERGLWENIVYLDFRSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 31.2 bits (69), Expect = 0.26, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ L N PD EL+R+ YA G ++ E E+ +WEN + R L+
Sbjct: 362 YERNELAPNKPD--ERELARRRESYAGG----------YVKEPERGLWENIVYLDFRSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 31.2 bits (69), Expect = 0.27, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ L N PD EL+R+ YA G ++ E E+ +WEN + R L+
Sbjct: 362 YERNELAPNKPD--ERELARRRESYAGG----------YVKEPERGLWENIVYLDFRSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 30.8 bits (68), Expect = 0.36, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ + N PD EL+R+ YA G ++ E EK +WEN + + L+
Sbjct: 362 YERNDVAPNKPD--ERELARRTESYAGG----------YVKEPEKGLWENIVYLDYKSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 30.8 bits (68), Expect = 0.37, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ + N PD EL+R+ YA G ++ E EK +WEN + + L+
Sbjct: 362 YERNDVAPNKPD--ERELARRTESYAGG----------YVKEPEKGLWENIVYLDYKSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase
Mutant
Length = 774
Score = 30.4 bits (67), Expect = 0.50, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ L N PD +EL+R+ Y G ++ E E+ +WEN + R L+
Sbjct: 362 YERNELAPNKPD--EKELARRRQSYEGG----------YVKEPERGLWENIVYLDFRSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 17 ALRQNYPDVG-------YEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRR 69
+L+ +PD+G ++E+ ++V+E A V + ++ E+ +K LRR
Sbjct: 209 SLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRR 268
Query: 70 ILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTS 116
+ HP + ++K Y DD +FL V C L + ++K TS
Sbjct: 269 V-HP-VSTMIKGLYGIKDD----VFLSVPCILGQNGISDLVKVTLTS 309
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 17 ALRQNYPDVG-------YEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRR 69
+L+ +PD+G ++E+ ++V+E A V + ++ E+ +K LRR
Sbjct: 209 SLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAESIMKNLRR 268
Query: 70 ILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTS 116
+ HP + ++K Y DD +FL V C L + ++K TS
Sbjct: 269 V-HP-VSTMIKGLYGIKDD----VFLSVPCILGQNGISDLVKVTLTS 309
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 61 ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTS 116
E+ +K LRR+ HP I +LK GL ++++FL V C L + V+K TS
Sbjct: 260 ESIMKNLRRV-HP-ISTMLK----GLYGIKEDVFLSVPCVLGQNGISDVVKVTLTS 309
>pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ L N PD +EL+R+ Y G ++ E E+ +WEN + R L+
Sbjct: 362 YERNELAPNKPDE--KELARRRQSYE----------GGYVKEPERGLWENIVYLDFRSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 61 ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDT 115
E+ +K LRR+ HP I ++K GL ++N+FL V C L + V+K T
Sbjct: 261 ESIMKNLRRV-HP-ISTMIK----GLYGIKENVFLSVPCILGQNGISDVVKVTLT 309
>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
Of Mouse Numb Protein
Length = 156
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 55 REKEVWENAIKKLRRILHPSIQEVLKLSYDGL---DDKEKNIFLD 96
R + E+A+K+L+ +++ VL +S DGL D+K K++ +D
Sbjct: 42 RGMHICEDAVKRLKATGKKAVKAVLWVSADGLRVVDEKTKDLIVD 86
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 28.9 bits (63), Expect = 1.4, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ L N PD EL+R+ YA G ++ E E+ +W+N + R L+
Sbjct: 362 YKRNELAPNKPD--ERELARRRGGYAGG----------YVKEPERGLWDNIVYLDFRSLY 409
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 410 PSIIITHNVSPDTLN 424
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 775
Score = 28.1 bits (61), Expect = 2.5, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ + N P EE R++ E G F+ E EK +WEN + R L+
Sbjct: 362 YERNEVAPNKPS--EEEYQRRLRE---------SYTGGFVKEPEKGLWENIVYLDFRALY 410
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 411 PSIIITHNVSPDTLN 425
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 122 IGIILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSIDPRNRS 164
+ I ID L + NK+ HD Q L ++I+Q K P+N+S
Sbjct: 55 VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF--PKNQS 95
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 61 ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDT 115
E+ +K LRR+ HP I ++K GL ++++FL V C L + V+K T
Sbjct: 261 ESIMKNLRRV-HP-ISTMIK----GLYGIKEDVFLSVPCILGQNGISDVVKVTLT 309
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 61 ENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDT 115
E+ +K LRR+ HP I ++K GL ++++FL V C L + V+K T
Sbjct: 260 ESIMKNLRRV-HP-ISTMIK----GLYGIKEDVFLSVPCILGQNGISDVVKVTLT 308
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 26 GYEELSRKVMEYAQGVPSALKVLGCF-LFEREKEVWENAIKKLRRIL 71
G+++L K+ E+ + SA+K+ + +FE E W++ + K+R +L
Sbjct: 194 GWDDLFNKLAEHLNSI-SAMKMSPYYKVFEEEANHWDDRLNKVRSLL 239
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 26 GYEELSRKVMEYAQGVPSALKVLGCF-LFEREKEVWENAIKKLRRIL 71
G+++L K+ E+ + SA+K+ + +FE E W++ + K+R +L
Sbjct: 194 GWDDLFNKLAEHLNSI-SAMKMSPYYKVFEEEANHWDDRLNKVRSLL 239
>pdb|1TTY|A Chain A, Solution Structure Of Sigma A Region 4 From Thermotoga
Maritima
Length = 87
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 40 GVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYDGLDDKE 90
G P L+ +G + + + + +K LR++ HPS + LK +D+ E
Sbjct: 36 GKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMDENE 86
>pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 13 FSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH 72
+ R+ + N P EE R++ E G F+ E EK +WEN + + L+
Sbjct: 362 YERNEVAPNKPSE--EEYQRRLRE---------SYTGGFVKEPEKGLWENIVYLDYKSLY 410
Query: 73 PSIQEVLKLSYDGLD 87
PSI +S D L+
Sbjct: 411 PSIIITHNVSPDTLN 425
>pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|B Chain B, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|D Chain D, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
pdb|3FTB|E Chain E, The Crystal Structure Of The Histidinol-Phosphate
Aminotransferase From Clostridium Acetobutylicum
Length = 361
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 22 YPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRIL 71
YPDV Y L++ + Y + LK +G L E+ E +I +IL
Sbjct: 58 YPDVNYRRLNKSIENYLK-----LKDIGIVLGNGASEIIELSISLFEKIL 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,767,643
Number of Sequences: 62578
Number of extensions: 188522
Number of successful extensions: 476
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 36
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)