Query 043926
Match_columns 164
No_of_seqs 175 out of 1143
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-34 4.4E-39 247.9 9.8 154 1-154 314-496 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.9E-32 6.3E-37 242.0 15.3 164 1-164 348-513 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 3.4E-23 7.3E-28 159.3 4.7 121 1-121 154-284 (287)
4 PRK04841 transcriptional regul 98.6 3.3E-07 7.2E-12 80.6 10.4 145 3-156 185-335 (903)
5 COG3903 Predicted ATPase [Gene 96.8 0.0022 4.7E-08 51.6 5.1 148 7-156 145-317 (414)
6 PRK00080 ruvB Holliday junctio 96.5 0.0027 5.9E-08 50.1 3.5 128 1-135 177-310 (328)
7 TIGR00635 ruvB Holliday juncti 96.1 0.028 6.1E-07 43.6 7.3 130 1-139 156-294 (305)
8 COG2909 MalT ATP-dependent tra 95.3 0.13 2.7E-06 45.3 8.5 142 3-156 193-341 (894)
9 COG3899 Predicted ATPase [Gene 91.9 0.49 1.1E-05 42.3 6.3 112 1-115 216-335 (849)
10 TIGR03015 pepcterm_ATPase puta 86.9 5.8 0.00013 29.9 8.2 52 1-52 189-242 (269)
11 PF14647 FAM91_N: FAM91 N-term 48.3 8.6 0.00019 30.2 0.9 20 81-100 104-124 (308)
12 PF03861 ANTAR: ANTAR domain; 47.8 23 0.0005 20.1 2.4 30 3-35 27-56 (56)
13 PF14516 AAA_35: AAA-like doma 42.0 76 0.0017 25.1 5.4 49 1-55 198-246 (331)
14 PF14050 Nudc_N: N-terminal co 38.1 63 0.0014 19.0 3.3 30 27-56 3-32 (62)
15 PF12802 MarR_2: MarR family; 37.2 5.7 0.00012 22.7 -1.3 51 85-135 2-54 (62)
16 smart00346 HTH_ICLR helix_turn 34.7 45 0.00098 20.4 2.5 61 94-154 11-74 (91)
17 PF15385 SARG: Specifically an 34.4 22 0.00048 30.0 1.3 17 81-97 6-22 (497)
18 PF13730 HTH_36: Helix-turn-he 33.8 13 0.00028 20.7 -0.1 48 85-132 2-55 (55)
19 TIGR01610 phage_O_Nterm phage 32.9 34 0.00073 21.8 1.7 62 81-142 18-89 (95)
20 PF04089 BRICHOS: BRICHOS doma 32.4 29 0.00064 21.8 1.4 18 26-43 77-94 (97)
21 TIGR02833 spore_III_AB stage I 31.2 1.7E+02 0.0037 20.8 5.3 15 86-100 102-116 (170)
22 PRK06893 DNA replication initi 30.3 1.6E+02 0.0035 21.8 5.3 40 1-42 158-197 (229)
23 COG3636 Predicted transcriptio 28.4 1.6E+02 0.0034 19.2 4.1 37 4-42 17-53 (100)
24 PF03474 DMA: DMRTA motif; In 28.0 97 0.0021 16.5 2.6 26 9-40 4-29 (39)
25 KOG4654 Uncharacterized conser 27.4 1.8E+02 0.0039 21.4 4.8 27 70-96 193-219 (252)
26 PF10493 Rod_C: Rough deal pro 25.3 2.8E+02 0.006 23.9 6.3 44 27-70 364-410 (551)
27 KOG3926 F-box proteins [Amino 24.3 2.4E+02 0.0052 22.2 5.2 34 80-115 199-232 (332)
28 PF01099 Uteroglobin: Uteroglo 23.4 1.7E+02 0.0037 17.2 5.2 52 42-94 2-54 (67)
29 PRK07471 DNA polymerase III su 22.1 4.3E+02 0.0092 21.4 8.1 42 1-48 197-238 (365)
30 PF05331 DUF742: Protein of un 22.1 83 0.0018 21.0 2.1 28 26-54 40-67 (114)
31 PF05843 Suf: Suppressor of fo 21.2 3.8E+02 0.0083 20.5 9.9 95 6-101 17-117 (280)
32 PRK08307 stage III sporulation 21.1 3E+02 0.0065 19.5 5.0 15 86-100 103-117 (171)
33 PF09548 Spore_III_AB: Stage I 21.0 3.1E+02 0.0067 19.3 7.5 61 41-101 51-117 (170)
34 KOG4062 6-O-methylguanine-DNA 20.7 1.9E+02 0.0041 20.7 3.7 15 40-54 117-131 (178)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-34 Score=247.85 Aligned_cols=154 Identities=29% Similarity=0.404 Sum_probs=136.1
Q ss_pred CCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-CHHHHHHHHHHHhhc-----c--
Q 043926 1 MKALMFNHALELFSRHALRQN-YPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-EKEVWENAIKKLRRI-----L-- 71 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-~~~~w~~~l~~l~~~-----~-- 71 (164)
+.+|+++|||.||++.+|... ...+..++++++++++|+|+|||++++|+.|+.| +..+|+.+.+.+.+. +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 568999999999999997753 3334578999999999999999999999999997 566999999988764 2
Q ss_pred hhhHHHHHHHhhhCcChhHHHHHhhhhhccCCC--CHHHHHHHHHHcCCCCc------------cce-EecccccceeeC
Q 043926 72 HPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGE--DVYSVMKFLDTSGFYPE------------IGI-ILIDKSLIAVSC 136 (164)
Q Consensus 72 ~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~lw~~~g~~~~------------~~l-~L~~~~Ll~~~~ 136 (164)
...+..+|++||+.||++.|.||+|||+||+|+ +++.++.+|+|+||+.. .++ +|+++||+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 368899999999999999999999999999996 89999999999998632 368 999999999873
Q ss_pred -----CeEeecHHHHHHHHHHHh
Q 043926 137 -----NKITMHDLLQGLGREIVQ 154 (164)
Q Consensus 137 -----~~~~mHdl~r~~a~~~~~ 154 (164)
..|+|||+||++|.+++.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhc
Confidence 569999999999999999
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.9e-32 Score=242.00 Aligned_cols=164 Identities=40% Similarity=0.659 Sum_probs=150.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcchhhHHHHHH
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLK 80 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~~~l~~~l~ 80 (164)
|+.|+++|||+||+++||++..+++++.+++++|+++|+|+||||+++|+.|++++.++|+.+++++....+..+..+|+
T Consensus 348 v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~ 427 (1153)
T PLN03210 348 VCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLR 427 (1153)
T ss_pred ecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHH
Confidence 46789999999999999988777778899999999999999999999999999999999999999999888889999999
Q ss_pred HhhhCcCh-hHHHHHhhhhhccCCCCHHHHHHHHHHcCCCCccce-EecccccceeeCCeEeecHHHHHHHHHHHhhcCC
Q 043926 81 LSYDGLDD-KEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVSCNKITMHDLLQGLGREIVQQKSI 158 (164)
Q Consensus 81 ~sy~~L~~-~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~~~~~~mHdl~r~~a~~~~~~e~~ 158 (164)
+||+.|++ ..|.||+++|+||.+.+.+.+..++...++.+...+ .|+++||++...++|+||||+|+||++++++++.
T Consensus 428 ~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 428 VSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred HhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcC
Confidence 99999987 699999999999999988888888888888888889 9999999988888999999999999999999876
Q ss_pred CCCCCC
Q 043926 159 DPRNRS 164 (164)
Q Consensus 159 ~~~~~s 164 (164)
+|++|+
T Consensus 508 ~~~~r~ 513 (1153)
T PLN03210 508 EPGERE 513 (1153)
T ss_pred CCCcce
Confidence 677664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.88 E-value=3.4e-23 Score=159.26 Aligned_cols=121 Identities=30% Similarity=0.522 Sum_probs=98.7
Q ss_pred CCCCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-CHHHHHHHHHHHhhcc------h
Q 043926 1 MKALMFNHALELFSRHALRQN-YPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-EKEVWENAIKKLRRIL------H 72 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-~~~~w~~~l~~l~~~~------~ 72 (164)
|++|+++||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+.+ +...|..+++++.... .
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 578999999999999996544 2334556788999999999999999999999653 5678999988876542 3
Q ss_pred hhHHHHHHHhhhCcChhHHHHHhhhhhccCCC--CHHHHHHHHHHcCCCCc
Q 043926 73 PSIQEVLKLSYDGLDDKEKNIFLDVACFLNGE--DVYSVMKFLDTSGFYPE 121 (164)
Q Consensus 73 ~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~lw~~~g~~~~ 121 (164)
..+..++.+||+.||++.|+||+|||+||.++ +.+.++++|.++|++..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 78999999999999999999999999999985 79999999999998764
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=3.3e-07 Score=80.63 Aligned_cols=145 Identities=13% Similarity=0.187 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcchhhHHHHHHHh
Q 043926 3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLS 82 (164)
Q Consensus 3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~~~l~~~l~~s 82 (164)
+|+.+|+.++|.... +.. .. .+.+.++.+.|+|+|+++..++..++..+.. .......+...+...+...+.-.
T Consensus 185 ~f~~~e~~~ll~~~~-~~~-~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 258 (903)
T PRK04841 185 AFDHQEAQQFFDQRL-SSP-IE---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEE 258 (903)
T ss_pred CCCHHHHHHHHHhcc-CCC-CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHH
Confidence 789999999998765 322 12 3456789999999999999998877543210 11112222222234466655544
Q ss_pred -hhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHcCCCCccce-Eeccccccee-e---CCeEeecHHHHHHHHHHHhhc
Q 043926 83 -YDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAV-S---CNKITMHDLLQGLGREIVQQK 156 (164)
Q Consensus 83 -y~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~-~---~~~~~mHdl~r~~a~~~~~~e 156 (164)
++.||++.++.++.+|+++ .++.+.+..+.... .+...+ +|.+.+++.. . ..+|++|++++++.+.....+
T Consensus 259 v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 259 VLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 7899999999999999997 66766555444311 234567 9999999754 3 237999999999999876443
No 5
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.85 E-value=0.0022 Score=51.61 Aligned_cols=148 Identities=17% Similarity=0.253 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhcCCC---CCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHH----Hhh------cchh
Q 043926 7 NHALELFSRHALRQN---YPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKK----LRR------ILHP 73 (164)
Q Consensus 7 ~ea~~Lf~~~a~~~~---~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~----l~~------~~~~ 73 (164)
+++.++|...+.-.. .........+.+|.++.+|.|++|..++++.+.-......+.++. +.. ....
T Consensus 145 d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~q 224 (414)
T COG3903 145 DEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQ 224 (414)
T ss_pred CchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHH
Confidence 367888877662211 122344567888999999999999999999987655444443332 221 1235
Q ss_pred hHHHHHHHhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHcCCCC--cc-----ce-Eecccccceee----CCeEee
Q 043926 74 SIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYP--EI-----GI-ILIDKSLIAVS----CNKITM 141 (164)
Q Consensus 74 ~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~--~~-----~l-~L~~~~Ll~~~----~~~~~m 141 (164)
.....+.+||.-|....+-.|..++.|...++.+ ...|.+.|-.. .. .+ .+++++++... .-+|+.
T Consensus 225 tl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl 302 (414)
T COG3903 225 TLRASLDWSYALLTGWERALFGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRL 302 (414)
T ss_pred hccchhhhhhHhhhhHHHHHhcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHH
Confidence 7789999999999999999999999999888665 33444444332 22 35 78999998765 335888
Q ss_pred cHHHHHHHHHHHhhc
Q 043926 142 HDLLQGLGREIVQQK 156 (164)
Q Consensus 142 Hdl~r~~a~~~~~~e 156 (164)
-+.+|.|+.....+.
T Consensus 303 ~eT~r~YalaeL~r~ 317 (414)
T COG3903 303 LETGRRYALAELHRS 317 (414)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888999888766554
No 6
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.50 E-value=0.0027 Score=50.05 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=80.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHH--HHhhcchhhHHHH
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIK--KLRRILHPSIQEV 78 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~--~l~~~~~~~l~~~ 78 (164)
+++++.++..+++.+.+-..+.. -..+....|++.|+|.|-.+..+...+ ..|....+ ......-......
T Consensus 177 l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 177 LEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCCCCCCHHHHHHHHHH
Confidence 46789999999999887332221 224678899999999996554444432 12211110 0000111233455
Q ss_pred HHHhhhCcChhHHHHHh-hhhhccCC-CCHHHHHHHHHHcCCCCccce--Eecccccceee
Q 043926 79 LKLSYDGLDDKEKNIFL-DVACFLNG-EDVYSVMKFLDTSGFYPEIGI--ILIDKSLIAVS 135 (164)
Q Consensus 79 l~~sy~~L~~~~k~~fl-~~a~fp~~-~~~~~l~~lw~~~g~~~~~~l--~L~~~~Ll~~~ 135 (164)
+...+..|++..+..+. ....|+.+ +..+.+...+..+....+..+ .|++++|++..
T Consensus 250 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 250 LGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred hCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 67778899998888886 77778766 577888777755544444344 69999999765
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.14 E-value=0.028 Score=43.63 Aligned_cols=130 Identities=17% Similarity=0.138 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHH-HHHhhcch---hhHH
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAI-KKLRRILH---PSIQ 76 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l-~~l~~~~~---~~l~ 76 (164)
+++++.+|..+++.+.+-..... -..+....|++.|+|.|-.+..+...+ |.... ..-..... ....
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHH
Confidence 46789999999999887322211 224667889999999997665554432 11100 00000111 1222
Q ss_pred HHHHHhhhCcChhHHHHHh-hhhhccCC-CCHHHHHHHHHHcCCCCccce--Eecccccceee-CCeE
Q 043926 77 EVLKLSYDGLDDKEKNIFL-DVACFLNG-EDVYSVMKFLDTSGFYPEIGI--ILIDKSLIAVS-CNKI 139 (164)
Q Consensus 77 ~~l~~sy~~L~~~~k~~fl-~~a~fp~~-~~~~~l~~lw~~~g~~~~~~l--~L~~~~Ll~~~-~~~~ 139 (164)
..+..+|..|++..+..+. .++.+..+ .+.+.+...+......++..+ .|++++|+... .|++
T Consensus 227 ~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 227 EMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 3356678899998888777 55777654 577787777766655555556 39999999765 4443
No 8
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.30 E-value=0.13 Score=45.31 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-CHHHHHHHHHHHhhcchhhHHHHHH-
Q 043926 3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-EKEVWENAIKKLRRILHPSIQEVLK- 80 (164)
Q Consensus 3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-~~~~w~~~l~~l~~~~~~~l~~~l~- 80 (164)
.++.+|+-++|.... + .+.+ ....+.+.+..+|.+-|+..++=.+++. +...- +..+... ...+..-|.
T Consensus 193 rf~~eE~~~fl~~~~--~-l~Ld--~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~---~~~LsG~-~~~l~dYL~e 263 (894)
T COG2909 193 RFDTEEAAAFLNDRG--S-LPLD--AADLKALYDRTEGWAAALQLIALALRNNTSAEQS---LRGLSGA-ASHLSDYLVE 263 (894)
T ss_pred cCChHHHHHHHHHcC--C-CCCC--hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH---hhhccch-HHHHHHHHHH
Confidence 367899999998864 1 2221 3446789999999999999998888742 22211 1111111 112222222
Q ss_pred HhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHcCCCCccce-Eecccccceee----CCeEeecHHHHHHHHHHHhh
Q 043926 81 LSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS----CNKITMHDLLQGLGREIVQQ 155 (164)
Q Consensus 81 ~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~----~~~~~mHdl~r~~a~~~~~~ 155 (164)
-=++.||+++|..++.+|+++. .-+.++.-....+ ....-+ +|.+++|+-.. .++|+.|.|+.+|-+.....
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~--f~~eL~~~Ltg~~-ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSR--FNDELCNALTGEE-NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHH--hhHHHHHHHhcCC-cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 2267899999999999999952 2234444443321 112236 89999998644 67899999999999887666
Q ss_pred c
Q 043926 156 K 156 (164)
Q Consensus 156 e 156 (164)
+
T Consensus 341 ~ 341 (894)
T COG2909 341 E 341 (894)
T ss_pred c
Confidence 5
No 9
>COG3899 Predicted ATPase [General function prediction only]
Probab=91.88 E-value=0.49 Score=42.26 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC-------CHHHHHHHHHHHhhcch-
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER-------EKEVWENAIKKLRRILH- 72 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~-------~~~~w~~~l~~l~~~~~- 72 (164)
|.||+..|...+..... ++... ...+..+.|+++-.|.|+-+.-+-..+... ....|..-...+...+.
T Consensus 216 L~PL~~~d~~~lV~~~l-~~~~~--~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~ 292 (849)
T COG3899 216 LAPLSRADTNQLVAATL-GCTKL--LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATT 292 (849)
T ss_pred cCcCchhhHHHHHHHHh-CCccc--ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhh
Confidence 57899999988888765 44221 224677889999999999987766666531 34455544444433222
Q ss_pred hhHHHHHHHhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHH
Q 043926 73 PSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDT 115 (164)
Q Consensus 73 ~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~ 115 (164)
..+-+.+..-.+.||...|......|++-..++.+.+..++..
T Consensus 293 ~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~ 335 (849)
T COG3899 293 DAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAED 335 (849)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhh
Confidence 3356678888999999999999999999888888877777764
No 10
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=86.91 E-value=5.8 Score=29.88 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCC--CCCchHHHHHHHHHHHhcCChhHHHHHhhhh
Q 043926 1 MKALMFNHALELFSRHALRQN--YPDVGYEELSRKVMEYAQGVPSALKVLGCFL 52 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l 52 (164)
+++|+.+|..+++...+-... ....--.+..+.|.+.|+|.|..+..++..+
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 478999999998887652111 1111124778899999999999999888876
No 11
>PF14647 FAM91_N: FAM91 N-terminus
Probab=48.27 E-value=8.6 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=18.1
Q ss_pred HhhhCcCh-hHHHHHhhhhhc
Q 043926 81 LSYDGLDD-KEKNIFLDVACF 100 (164)
Q Consensus 81 ~sy~~L~~-~~k~~fl~~a~f 100 (164)
.|||.||+ ++.+|++.+|+=
T Consensus 104 kSYDsLPNFTAaD~LRllGIG 124 (308)
T PF14647_consen 104 KSYDSLPNFTAADCLRLLGIG 124 (308)
T ss_pred CCcccCCCCcHHHHHHHhcch
Confidence 68999999 999999999873
No 12
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=47.75 E-value=23 Score=20.11 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 043926 3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVM 35 (164)
Q Consensus 3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv 35 (164)
.+++++|+.++.+.+...+. ...+++..|+
T Consensus 27 g~~e~~A~~~Lr~~Am~~~~---~l~~vA~~ii 56 (56)
T PF03861_consen 27 GLSEDEAYRLLRRQAMRRRR---SLADVAEEII 56 (56)
T ss_dssp T--HHHHHHHHHHHHHHCTS----HHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHcCC---CHHHHHHHHC
Confidence 57899999999999854443 3345565553
No 13
>PF14516 AAA_35: AAA-like domain
Probab=41.97 E-value=76 Score=25.09 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER 55 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~ 55 (164)
|++++.+|...|..++-. . .. ....++|...+||.|--+..++..+...
T Consensus 198 L~~Ft~~ev~~L~~~~~~--~-~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 198 LPDFTPEEVQELAQRYGL--E-FS---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCCHHHHHHHHHhhhc--c-CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 567899999999888742 2 11 1238889999999999999999988653
No 14
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=38.12 E-value=63 Score=18.99 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhhhccCC
Q 043926 27 YEELSRKVMEYAQGVPSALKVLGCFLFERE 56 (164)
Q Consensus 27 ~~~~~~~iv~~c~glPLAl~~~g~~l~~~~ 56 (164)
+..+.-.|++.|+|++=-|.++-+.|+.++
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkT 32 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKT 32 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Confidence 455677899999999999999999998765
No 15
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=37.20 E-value=5.7 Score=22.66 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=33.1
Q ss_pred CcChhHHHHHhhhhhccCC-CCHHHHHHHHHHcCCCCccce-Eecccccceee
Q 043926 85 GLDDKEKNIFLDVACFLNG-EDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS 135 (164)
Q Consensus 85 ~L~~~~k~~fl~~a~fp~~-~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~ 135 (164)
.|++..-.++.++.-+|.+ .+...+...+.-..-.....+ .|+.++||+..
T Consensus 2 glt~~q~~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4667777888888888876 566666666633322223345 78888888765
No 16
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=34.66 E-value=45 Score=20.39 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=33.7
Q ss_pred HhhhhhccCCCCHHHHHHHHHHcCCCCccce-Eecccccceee--CCeEeecHHHHHHHHHHHh
Q 043926 94 FLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS--CNKITMHDLLQGLGREIVQ 154 (164)
Q Consensus 94 fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~--~~~~~mHdl~r~~a~~~~~ 154 (164)
+.+++--+...+...+.....-.--.....+ .|.+.+++... .++|++-.-+.+++.....
T Consensus 11 l~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~~~~~~~~~~ 74 (91)
T smart00346 11 LRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKVLELGQSYLS 74 (91)
T ss_pred HHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeeecCCCCceeecHHHHHHHHHHHh
Confidence 3333433334455555544422111123356 78888888775 5678887777777666543
No 17
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=34.40 E-value=22 Score=29.95 Aligned_cols=17 Identities=35% Similarity=0.303 Sum_probs=15.1
Q ss_pred HhhhCcChhHHHHHhhh
Q 043926 81 LSYDGLDDKEKNIFLDV 97 (164)
Q Consensus 81 ~sy~~L~~~~k~~fl~~ 97 (164)
-||+.|+.+.|.|++++
T Consensus 6 ~Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 6 ESLDYLSAEEKECLLFL 22 (497)
T ss_pred ccccccchhhHHHHHHH
Confidence 38999999999999974
No 18
>PF13730 HTH_36: Helix-turn-helix domain
Probab=33.78 E-value=13 Score=20.71 Aligned_cols=48 Identities=27% Similarity=0.235 Sum_probs=25.9
Q ss_pred CcChhHHHHHhhhhhccCC----C-CHHHHHHHHHHcCCCCccce-Eecccccc
Q 043926 85 GLDDKEKNIFLDVACFLNG----E-DVYSVMKFLDTSGFYPEIGI-ILIDKSLI 132 (164)
Q Consensus 85 ~L~~~~k~~fl~~a~fp~~----~-~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll 132 (164)
.|++..+.++.++.-|..+ + +.+.+........-....++ +|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 5788888888888887632 1 33444433311111112355 66666654
No 19
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=32.93 E-value=34 Score=21.76 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=37.4
Q ss_pred HhhhCcChhHHHHHhhhhh----cc---CCCCHHHHHHHHHHcCCCCccce-EecccccceeeC--CeEeec
Q 043926 81 LSYDGLDDKEKNIFLDVAC----FL---NGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVSC--NKITMH 142 (164)
Q Consensus 81 ~sy~~L~~~~k~~fl~~a~----fp---~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~~--~~~~mH 142 (164)
+.+..+++.+-++++.++- ++ ..++...+..+....--.....+ .|..+++|.... |.+.|.
T Consensus 18 l~~~~l~~r~~~vLl~L~~~~~G~~~~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 18 LPGADLSGREFRVLLAIIRLTYGWNKKQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhCccccCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 4466778888888887773 11 12355555555433222233457 899999998763 566664
No 20
>PF04089 BRICHOS: BRICHOS domain; InterPro: IPR007084 The BRICHOS family is defined by a 100 amino acid region found in a variety of proteins implicated in dementia, respiratory distress and cancer, including BRI-2, Chondromodulin-I (ChM-I), CA11, and surfactant protein C []. In several cases, the BRICHOS region is located in the propeptide region that is removed after proteolytic processing. This domain could be involved in the complex post-translational processing of these proteins.; PDB: 2YAD_F.
Probab=32.39 E-value=29 Score=21.83 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHhcCChh
Q 043926 26 GYEELSRKVMEYAQGVPS 43 (164)
Q Consensus 26 ~~~~~~~~iv~~c~glPL 43 (164)
+...++..|.+.|+|+|.
T Consensus 77 D~~~lg~~I~~lC~~~p~ 94 (97)
T PF04089_consen 77 DLSFLGSPIQELCEGLPT 94 (97)
T ss_dssp ------HHHHHHHTTS-E
T ss_pred CHHHHhhHHHHHhCCCCc
Confidence 445677889999999984
No 21
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=31.20 E-value=1.7e+02 Score=20.77 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=7.6
Q ss_pred cChhHHHHHhhhhhc
Q 043926 86 LDDKEKNIFLDVACF 100 (164)
Q Consensus 86 L~~~~k~~fl~~a~f 100 (164)
|+++.+..+..++-.
T Consensus 102 L~~~d~eiL~~lG~~ 116 (170)
T TIGR02833 102 LQKSEKEILLQFGKT 116 (170)
T ss_pred CCHHHHHHHHHHHHH
Confidence 445555555554443
No 22
>PRK06893 DNA replication initiation factor; Validated
Probab=30.30 E-value=1.6e+02 Score=21.78 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCh
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVP 42 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glP 42 (164)
+++++.++.++++.+.++...-.. -.++..-|++.+.|-.
T Consensus 158 l~~pd~e~~~~iL~~~a~~~~l~l--~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 158 LNDLTDEQKIIVLQRNAYQRGIEL--SDEVANFLLKRLDRDM 197 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhccCCH
Confidence 457778888888887775433211 1355666777776544
No 23
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=28.36 E-value=1.6e+02 Score=19.17 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCh
Q 043926 4 LMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVP 42 (164)
Q Consensus 4 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glP 42 (164)
|+.+++...|-..++...+ +.+-..+..+|.+.+|.-
T Consensus 17 l~~ee~ia~yL~~~le~~d--~a~i~~alg~var~~GMs 53 (100)
T COG3636 17 LTDEEAIAAYLNAALEEGD--PALIAAALGVVARSRGMS 53 (100)
T ss_pred hCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCHH
Confidence 5667777777777776554 466666777888888764
No 24
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=27.96 E-value=97 Score=16.48 Aligned_cols=26 Identities=8% Similarity=0.359 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHhcC
Q 043926 9 ALELFSRHALRQNYPDVGYEELSRKVMEYAQG 40 (164)
Q Consensus 9 a~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~g 40 (164)
..+++.+. |++. -....+.|.+.|+|
T Consensus 4 pidiL~rv-FP~~-----kr~~Le~iL~~C~G 29 (39)
T PF03474_consen 4 PIDILTRV-FPHQ-----KRSVLELILQRCNG 29 (39)
T ss_pred HHHHHHHH-CCCC-----ChHHHHHHHHHcCC
Confidence 34555554 4432 23556778999998
No 25
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.44 E-value=1.8e+02 Score=21.40 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHhhhCcChhHHHHHhh
Q 043926 70 ILHPSIQEVLKLSYDGLDDKEKNIFLD 96 (164)
Q Consensus 70 ~~~~~l~~~l~~sy~~L~~~~k~~fl~ 96 (164)
.+...+.++++..|+.+|-..|.-|--
T Consensus 193 lsadeV~eVikae~dsi~la~Qd~~d~ 219 (252)
T KOG4654|consen 193 LSADEVEEVIKAELDSIPLAKQDAFDG 219 (252)
T ss_pred ccHHHHHHHHHHhccccchhhhccccC
Confidence 345789999999999999988887754
No 26
>PF10493 Rod_C: Rough deal protein C-terminal region; InterPro: IPR019527 Rod, the Rough deal protein (also known as Kinetochore-associated protein 1) displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10 [], and indeed the two proteins function together, localisation of each depending upon the other []. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C- terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase[]. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in Caenorhabditis elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint [].
Probab=25.26 E-value=2.8e+02 Score=23.95 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHhhhhcc---CCHHHHHHHHHHHhhc
Q 043926 27 YEELSRKVMEYAQGVPSALKVLGCFLFE---REKEVWENAIKKLRRI 70 (164)
Q Consensus 27 ~~~~~~~iv~~c~glPLAl~~~g~~l~~---~~~~~w~~~l~~l~~~ 70 (164)
-..+.+.+.+.-.+-|.|+++++...-+ .++.-|..++.++-..
T Consensus 364 K~~Lik~Lwk~h~~~p~alrliA~Lcley~i~dpqlWn~iL~~l~~~ 410 (551)
T PF10493_consen 364 KEGLIKSLWKNHSHNPQALRLIAELCLEYDIYDPQLWNGILQQLLGF 410 (551)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3567788888888999999999998765 3789999999987653
No 27
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=24.28 E-value=2.4e+02 Score=22.16 Aligned_cols=34 Identities=18% Similarity=0.059 Sum_probs=21.8
Q ss_pred HHhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHH
Q 043926 80 KLSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDT 115 (164)
Q Consensus 80 ~~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~ 115 (164)
.+.+.+||.+...-.+++ +|.+.+...+...|.+
T Consensus 199 ~ltl~dLP~e~vl~Il~r--lsDh~dL~s~aqa~et 232 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLR--LSDHRDLESLAQAWET 232 (332)
T ss_pred CCCcccchHHHHHHHHHH--ccCcchHHHHHHhhHH
Confidence 345777887766655553 5666666666666655
No 28
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=23.44 E-value=1.7e+02 Score=17.19 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=29.4
Q ss_pred hhHHHHHhhhhccCCHHHHHHHHHHHhhcch-hhHHHHHHHhhhCcChhHHHHH
Q 043926 42 PSALKVLGCFLFEREKEVWENAIKKLRRILH-PSIQEVLKLSYDGLDDKEKNIF 94 (164)
Q Consensus 42 PLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~-~~l~~~l~~sy~~L~~~~k~~f 94 (164)
|.....+...+.+ +.......++.+...+. .....-++-+++.++++.|.-+
T Consensus 2 pal~~~v~~~l~~-s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i 54 (67)
T PF01099_consen 2 PALEDVVTKFLFG-SPEEYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENI 54 (67)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred chHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5555666666666 66666666666554333 3445667778888887655543
No 29
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=22.13 E-value=4.3e+02 Score=21.36 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHH
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVL 48 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~ 48 (164)
+.+|+.++..+++.+.. + . .. ......++..++|-|+....+
T Consensus 197 l~~l~~~~i~~~L~~~~-~-~-~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 197 LRPLAPEDVIDALAAAG-P-D-LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCCCHHHHHHHHHHhc-c-c-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 46889999999988764 1 1 11 122267889999999755443
No 30
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=22.12 E-value=83 Score=21.00 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHhhhhcc
Q 043926 26 GYEELSRKVMEYAQGVPSALKVLGCFLFE 54 (164)
Q Consensus 26 ~~~~~~~~iv~~c~glPLAl~~~g~~l~~ 54 (164)
.+.....+|+..|.+ |+.+.-+++.++.
T Consensus 40 ~l~pE~~~Il~lC~~-~~SVAEiAA~L~l 67 (114)
T PF05331_consen 40 GLGPEHRAILELCRR-PLSVAEIAARLGL 67 (114)
T ss_pred CCCHHHHHHHHHHCC-CccHHHHHHhhCC
Confidence 444556789999999 9999999999865
No 31
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=21.16 E-value=3.8e+02 Score=20.47 Aligned_cols=95 Identities=15% Similarity=0.171 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChh-HHHHHhhhhcc--CCHHHHHHHHHHHhhc-chhhHHHHHHH
Q 043926 6 FNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPS-ALKVLGCFLFE--REKEVWENAIKKLRRI-LHPSIQEVLKL 81 (164)
Q Consensus 6 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPL-Al~~~g~~l~~--~~~~~w~~~l~~l~~~-~~~~l~~~l~~ 81 (164)
.+.|+.+|.+.. .......+.......+--.|++-|- |.++.=..++. .+...|...++-|... ....++.+++.
T Consensus 17 ~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 17 IEAARKVFKRAR-KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHH-CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 467888898876 3333333444444445566788887 88877777764 5788999988887654 34788999999
Q ss_pred hhhCcChh--HHHHHhhhhhcc
Q 043926 82 SYDGLDDK--EKNIFLDVACFL 101 (164)
Q Consensus 82 sy~~L~~~--~k~~fl~~a~fp 101 (164)
+...|+.+ .+..|....-|-
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE 117 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFE 117 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHH
T ss_pred HHHhcCchhHHHHHHHHHHHHH
Confidence 99999874 466665554443
No 32
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=21.14 E-value=3e+02 Score=19.54 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=7.5
Q ss_pred cChhHHHHHhhhhhc
Q 043926 86 LDDKEKNIFLDVACF 100 (164)
Q Consensus 86 L~~~~k~~fl~~a~f 100 (164)
|+++.+..+..++-.
T Consensus 103 L~~~d~eiL~~lg~~ 117 (171)
T PRK08307 103 LKKEDIEILLQFGKT 117 (171)
T ss_pred CCHHHHHHHHHHHHH
Confidence 445555555554443
No 33
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.04 E-value=3.1e+02 Score=19.35 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=27.4
Q ss_pred ChhHHHHHhhhhccCCHHHHHHHHHHHhhcchhhHHHHHHHhhh------CcChhHHHHHhhhhhcc
Q 043926 41 VPSALKVLGCFLFEREKEVWENAIKKLRRILHPSIQEVLKLSYD------GLDDKEKNIFLDVACFL 101 (164)
Q Consensus 41 lPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~~~l~~~l~~sy~------~L~~~~k~~fl~~a~fp 101 (164)
+|-|+..++......-..-...+.+.+......+...++.-+.+ .|.++.+..+..++-.-
T Consensus 51 L~eal~~i~~~~~~~~~~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~L 117 (170)
T PF09548_consen 51 LPEALERISRRSEGPIGEFFERVAERLEKNEGESFAEAWEEAVEKLLKESALKKEDKEILLELGKSL 117 (170)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Confidence 44444445544322222223333444444443444444444433 25556666666655543
No 34
>KOG4062 consensus 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair [Replication, recombination and repair]
Probab=20.73 E-value=1.9e+02 Score=20.70 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=10.1
Q ss_pred CChhHHHHHhhhhcc
Q 043926 40 GVPSALKVLGCFLFE 54 (164)
Q Consensus 40 glPLAl~~~g~~l~~ 54 (164)
|.|-|.+.+|+.++.
T Consensus 117 G~PsaaRaVg~A~~~ 131 (178)
T KOG4062|consen 117 GNPSAARAVGSAMAH 131 (178)
T ss_pred CCcHHHHHHHHHHcc
Confidence 567777777776654
Done!