Query 043926
Match_columns 164
No_of_seqs 175 out of 1143
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 16:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.7E-30 5.9E-35 214.8 6.1 153 1-157 290-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 2E-26 6.9E-31 203.3 7.7 150 3-156 285-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.9 2.5E-23 8.6E-28 172.7 6.9 147 2-152 284-448 (591)
4 1vt4_I APAF-1 related killer D 99.8 4.8E-22 1.7E-26 172.1 5.2 131 3-149 297-436 (1221)
5 2qen_A Walker-type ATPase; unk 98.2 3E-06 1E-10 65.1 6.9 140 1-149 200-348 (350)
6 2fna_A Conserved hypothetical 98.0 3.1E-05 1.1E-09 59.4 9.4 139 1-149 206-356 (357)
7 1w5s_A Origin recognition comp 96.9 0.0018 6.1E-08 50.7 6.6 136 1-145 212-387 (412)
8 2qby_B CDC6 homolog 3, cell di 92.2 3 0.0001 31.8 12.0 125 1-135 194-339 (384)
9 1njg_A DNA polymerase III subu 86.0 1.7 5.8E-05 30.3 5.7 50 1-52 182-231 (250)
10 1fnn_A CDC6P, cell division co 80.7 5 0.00017 30.5 6.8 146 1-156 190-387 (389)
11 2qby_A CDC6 homolog 1, cell di 74.7 23 0.00077 26.5 9.0 132 1-142 194-361 (386)
12 1utg_A Uteroglobin; steroid bi 68.9 14 0.00049 21.3 6.1 56 39-95 1-57 (70)
13 1sxj_B Activator 1 37 kDa subu 61.4 37 0.0013 24.7 7.5 48 1-50 163-211 (323)
14 1ccd_A Clara cell 17 KD protei 60.3 24 0.00081 20.8 5.3 55 39-94 3-58 (77)
15 2chg_A Replication factor C sm 50.5 31 0.0011 23.2 5.2 47 1-49 158-204 (226)
16 1utr_A Uteroglobin; clara cell 49.2 26 0.0009 21.6 4.1 56 37-93 20-76 (96)
17 2v1u_A Cell division control p 48.8 80 0.0027 23.5 11.0 125 1-135 198-351 (387)
18 2vda_B Maltoporin; sugar trans 48.3 11 0.00039 17.1 1.6 16 39-54 9-24 (28)
19 1zkr_A Major allergen I polype 40.6 82 0.0028 21.2 6.1 54 39-93 2-57 (153)
20 1hqc_A RUVB; extended AAA-ATPa 34.4 1.2E+02 0.0041 22.0 6.5 50 1-52 165-214 (324)
21 1o5l_A Transcriptional regulat 31.7 36 0.0012 23.3 3.0 41 104-144 165-206 (213)
22 3i71_A Ethanolamine utilizatio 27.1 10 0.00034 21.3 -0.5 52 92-143 7-59 (68)
23 2h8b_B Insulin-like 3; insulin 23.0 61 0.0021 15.6 2.0 14 28-41 12-25 (31)
24 4ev0_A Transcription regulator 22.8 22 0.00076 24.2 0.5 45 105-149 165-212 (216)
25 1iqp_A RFCS; clamp loader, ext 22.1 2.2E+02 0.0076 20.4 7.4 47 1-49 166-212 (327)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=1.7e-30 Score=214.84 Aligned_cols=153 Identities=10% Similarity=0.084 Sum_probs=122.0
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHH-HhhcchhhHHHHH
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKK-LRRILHPSIQEVL 79 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~-l~~~~~~~l~~~l 79 (164)
|++|+.+|||+||.+++|+... .+++.+++++|+++|+|+||||+++|+.++.++ +.|...+.. +.......+..++
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l 367 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECIT 367 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCS
T ss_pred CCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHH
Confidence 5789999999999999976543 357888999999999999999999999998774 334332322 2222446788899
Q ss_pred HHhhhCcChhHHHHHh-----------hhhhccCCCCHHHHHHHHHHc--CCCCc-----------cce-Eeccccccee
Q 043926 80 KLSYDGLDDKEKNIFL-----------DVACFLNGEDVYSVMKFLDTS--GFYPE-----------IGI-ILIDKSLIAV 134 (164)
Q Consensus 80 ~~sy~~L~~~~k~~fl-----------~~a~fp~~~~~~~l~~lw~~~--g~~~~-----------~~l-~L~~~~Ll~~ 134 (164)
.+||+.||+++|.||+ |||+||++++.+ +.+|+++ |++.. .+| +|+++||++.
T Consensus 368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLS 445 (549)
T ss_dssp SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSE
T ss_pred hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 9999999999999999 999999997655 8999999 77642 268 9999999998
Q ss_pred e-C---CeEeecHHHHHHHHHHHhhcC
Q 043926 135 S-C---NKITMHDLLQGLGREIVQQKS 157 (164)
Q Consensus 135 ~-~---~~~~mHdl~r~~a~~~~~~e~ 157 (164)
. . ++|+|||+||+||++++.+++
T Consensus 446 ~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 446 GKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 7 2 469999999999998877653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=2e-26 Score=203.31 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcc-----------
Q 043926 3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRIL----------- 71 (164)
Q Consensus 3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~----------- 71 (164)
+|+++||++||.+.++.. .+++.+.+++|+++|+|+||||+++|++|+.++ ..|...++++....
T Consensus 285 ~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~ 360 (1249)
T 3sfz_A 285 GLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYD 360 (1249)
T ss_dssp SCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTT
T ss_pred CCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccc
Confidence 499999999999998432 234456789999999999999999999998866 46999988886532
Q ss_pred hhhHHHHHHHhhhCcChhHHHHHhhhhhccCCC--CHHHHHHHHHHcCCCCccce-Eecccccceee-CCe---EeecHH
Q 043926 72 HPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGE--DVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS-CNK---ITMHDL 144 (164)
Q Consensus 72 ~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~-~~~---~~mHdl 144 (164)
...+..++.+||+.||+++|.||+|||+||+++ +.+.++.+|.+++..+..+| +|+++||++.. +++ |+|||+
T Consensus 361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l 440 (1249)
T 3sfz_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL 440 (1249)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHH
Confidence 256999999999999999999999999999884 88999999988776677789 99999999987 553 999999
Q ss_pred HHHHHHHHHhhc
Q 043926 145 LQGLGREIVQQK 156 (164)
Q Consensus 145 ~r~~a~~~~~~e 156 (164)
||+|+++.+.++
T Consensus 441 ~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 441 QVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHhhhhHH
Confidence 999999987765
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.88 E-value=2.5e-23 Score=172.72 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=122.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcc----------
Q 043926 2 KALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFEREKEVWENAIKKLRRIL---------- 71 (164)
Q Consensus 2 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~---------- 71 (164)
++|+.+||++||.+.++.. .....+.+.+|+++|+|+||||+.+|+.++.++ ..|...++.+....
T Consensus 284 ~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred CCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhcccc
Confidence 5899999999999998532 223345788999999999999999999998764 36888888876432
Q ss_pred -hhhHHHHHHHhhhCcChhHHHHHhhhhhccCC--CCHHHHHHHHHHcCCCCccce-Eecccccceee-C---CeEeecH
Q 043926 72 -HPSIQEVLKLSYDGLDDKEKNIFLDVACFLNG--EDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVS-C---NKITMHD 143 (164)
Q Consensus 72 -~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~-~---~~~~mHd 143 (164)
...+..++..||+.||++.|.||++||+||++ ++.+.++.+|..++..+..+| +|+++||++.. + .+|+||+
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~ 439 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHD 439 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCH
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcH
Confidence 25799999999999999999999999999987 477889999976544456678 99999999876 2 2699999
Q ss_pred HHHHHHHHH
Q 043926 144 LLQGLGREI 152 (164)
Q Consensus 144 l~r~~a~~~ 152 (164)
++|+|+++.
T Consensus 440 lv~~~~~~~ 448 (591)
T 1z6t_A 440 LQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999987
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.85 E-value=4.8e-22 Score=172.09 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhccC--CHHHHHHHHHHHhhcchhhHHHHHH
Q 043926 3 ALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFER--EKEVWENAIKKLRRILHPSIQEVLK 80 (164)
Q Consensus 3 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~~--~~~~w~~~l~~l~~~~~~~l~~~l~ 80 (164)
+|+.+|||+||++.. +.. . .++..++ |+|+||||+++|+.|+.+ +...|... ....+..+|+
T Consensus 297 ~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLe 360 (1221)
T 1vt4_I 297 TLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIE 360 (1221)
T ss_dssp CCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHc-CCC--H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHH
Confidence 799999999999984 432 1 1233333 999999999999999986 67778653 3467999999
Q ss_pred HhhhCcChhH-HHHHhhhhhccCCC--CHHHHHHHHHHcCC-CCccce-Eecccccceee--CCeEeecHHHHHHH
Q 043926 81 LSYDGLDDKE-KNIFLDVACFLNGE--DVYSVMKFLDTSGF-YPEIGI-ILIDKSLIAVS--CNKITMHDLLQGLG 149 (164)
Q Consensus 81 ~sy~~L~~~~-k~~fl~~a~fp~~~--~~~~l~~lw~~~g~-~~~~~l-~L~~~~Ll~~~--~~~~~mHdl~r~~a 149 (164)
+||+.||++. |+||++||+||+++ +.+.++.+|+++|. .+..+| +|+++||++.. .++|+||||+++++
T Consensus 361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999 99999999999875 67889999998753 245688 99999999986 56899999998855
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.20 E-value=3e-06 Score=65.09 Aligned_cols=140 Identities=15% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhcc-CCHHHHHHHHHHHhhcchhhHHHHH
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFE-REKEVWENAIKKLRRILHPSIQEVL 79 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~-~~~~~w~~~l~~l~~~~~~~l~~~l 79 (164)
+.+|+.+|+.+++.+..-...... ..+.+..+.+.|+|.|+++..++..+.. .+...+ +..+.......+...+
T Consensus 200 l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 274 (350)
T 2qen_A 200 VKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLEVAKGLIMGEL 274 (350)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHHHHHHHHHHHHH
Confidence 578999999999987541111111 1356788999999999999999876432 222221 1111111111111111
Q ss_pred H-HhhhCcChhHHHHHhhhhhccCCCCHHHHHHHHHHc--CCCC---ccce-EecccccceeeCCeEee-cHHHHHHH
Q 043926 80 K-LSYDGLDDKEKNIFLDVACFLNGEDVYSVMKFLDTS--GFYP---EIGI-ILIDKSLIAVSCNKITM-HDLLQGLG 149 (164)
Q Consensus 80 ~-~sy~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~~~--g~~~---~~~l-~L~~~~Ll~~~~~~~~m-Hdl~r~~a 149 (164)
. +.++ ++..+..+..+|. ...+...+....... +... ..++ .|++++||....++|++ |++++.+-
T Consensus 275 ~~l~~~--~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 275 EELRRR--SPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHH--CHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred HHHHhC--ChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence 1 1122 7899999999998 234556666555332 2322 3468 99999999887778887 67777764
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.02 E-value=3.1e-05 Score=59.41 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=85.0
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhhcc-CCHHHHHHHHHHHhhcchhhHHHHH
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFLFE-REKEVWENAIKKLRRILHPSIQEVL 79 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l~~-~~~~~w~~~l~~l~~~~~~~l~~~l 79 (164)
+++|+.+|+.+++.+..-......+.. ..|.+.|+|.|+++..++..+.. .+.+.| +..+.......+...+
T Consensus 206 l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l 278 (357)
T 2fna_A 206 LKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFA---INQTLEYAKKLILKEF 278 (357)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHH---HHHHHHHHHHHHHHHH
Confidence 478999999999987541111112222 78999999999999999887643 233333 1111111111122222
Q ss_pred H-Hhh--hCcChhHHHHHhhhhhccCCCCHHHHHHHHH-HcC--CC---Cccce-EecccccceeeCCeEee-cHHHHHH
Q 043926 80 K-LSY--DGLDDKEKNIFLDVACFLNGEDVYSVMKFLD-TSG--FY---PEIGI-ILIDKSLIAVSCNKITM-HDLLQGL 148 (164)
Q Consensus 80 ~-~sy--~~L~~~~k~~fl~~a~fp~~~~~~~l~~lw~-~~g--~~---~~~~l-~L~~~~Ll~~~~~~~~m-Hdl~r~~ 148 (164)
. ..+ ..|++..+..+..+|+- . +...+..... ..| .. ...++ .|++++||....+.|++ |++++++
T Consensus 279 ~~~~~~~~~l~~~~~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 279 ENFLHGREIARKRYLNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence 2 111 16889999999999983 2 5555554332 223 22 13468 99999999876677885 6788876
Q ss_pred H
Q 043926 149 G 149 (164)
Q Consensus 149 a 149 (164)
.
T Consensus 356 l 356 (357)
T 2fna_A 356 F 356 (357)
T ss_dssp T
T ss_pred h
Confidence 3
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.93 E-value=0.0018 Score=50.66 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=77.7
Q ss_pred CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc------CChhHHHHHhhhhc------cC---CHHHHHH
Q 043926 1 MKALMFNHALELFSRHA---LRQNYPDVGYEELSRKVMEYAQ------GVPSALKVLGCFLF------ER---EKEVWEN 62 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~c~------glPLAl~~~g~~l~------~~---~~~~w~~ 62 (164)
+++|+.++++++|...+ +...... .+....+.+.|+ |.|..+..+..... +. +...+..
T Consensus 212 l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~ 288 (412)
T 1w5s_A 212 LPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 288 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 57899999999997653 2221122 356778889999 99976554443211 11 2233332
Q ss_pred HHHHHhhcchhhHHHHHHHhhhCcChhHHHHHhhhhhccC----CCCHHHHHHHH-----HHcCCCC------ccce-Ee
Q 043926 63 AIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLN----GEDVYSVMKFL-----DTSGFYP------EIGI-IL 126 (164)
Q Consensus 63 ~l~~l~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~----~~~~~~l~~lw-----~~~g~~~------~~~l-~L 126 (164)
.+..... ...+.-++..||++.+.++..++.+.. .++...+...+ ...|..+ ..++ .|
T Consensus 289 ~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 362 (412)
T 1w5s_A 289 AVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHL 362 (412)
T ss_dssp HHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 2222110 234555678899999999999997641 24555544333 2233321 2468 99
Q ss_pred cccccceee------CCeEeecHHH
Q 043926 127 IDKSLIAVS------CNKITMHDLL 145 (164)
Q Consensus 127 ~~~~Ll~~~------~~~~~mHdl~ 145 (164)
++.+||... .|+|++|+|.
T Consensus 363 ~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 363 TSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHTTSEEEECC-------CCEEEEC
T ss_pred HhCCCEEeecccCCCCCceeEEEeC
Confidence 999999775 3457777554
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.24 E-value=3 Score=31.77 Aligned_cols=125 Identities=17% Similarity=0.026 Sum_probs=73.2
Q ss_pred CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CChh-HHHHHhhhh--c-c---CCHHHHHHHHHHH
Q 043926 1 MKALMFNHALELFSRHA---LRQNYPDVGYEELSRKVMEYAQ---GVPS-ALKVLGCFL--F-E---REKEVWENAIKKL 67 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~c~---glPL-Al~~~g~~l--~-~---~~~~~w~~~l~~l 67 (164)
+++++.++..++|.+.+ |...... .+..+.+++.|+ |-|. |+.++-... . + -+...+..+++..
T Consensus 194 l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 194 FKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp ECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 46889999999999875 2222222 245667777887 8776 443333222 1 1 2466666666554
Q ss_pred hhcchhhHHHHHHHhhhCcChhHHHHHhhhhhccCCCCH-HHHHHHHHHcCCCC------ccce-Eecccccceee
Q 043926 68 RRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNGEDV-YSVMKFLDTSGFYP------EIGI-ILIDKSLIAVS 135 (164)
Q Consensus 68 ~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~~~~-~~l~~lw~~~g~~~------~~~l-~L~~~~Ll~~~ 135 (164)
. ...+..+++.|+++.+..+..++....+-+. .....+-...|..+ ..++ .|.++++++..
T Consensus 271 ~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 E-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp H-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred h-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 2456778889999888888877761110011 12223333334222 1256 89999999875
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.96 E-value=1.7 Score=30.29 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhh
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFL 52 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l 52 (164)
+++++.+|..+++.+.+....... ..+..+.|++.|+|.|..+..+...+
T Consensus 182 l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578999999999998774322221 13567789999999999887765443
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=80.65 E-value=5 Score=30.46 Aligned_cols=146 Identities=13% Similarity=0.109 Sum_probs=80.7
Q ss_pred CCCCCHHHHHHHHHHhhcC---CCCCCchHHHHHHHHHHHh---------cCChhHHHHHhhh-hc-----cC---CHHH
Q 043926 1 MKALMFNHALELFSRHALR---QNYPDVGYEELSRKVMEYA---------QGVPSALKVLGCF-LF-----ER---EKEV 59 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~---~~~~~~~~~~~~~~iv~~c---------~glPLAl~~~g~~-l~-----~~---~~~~ 59 (164)
+++++.++..+++...+.. ..... .+..+.+++.+ +|.|..+..+... .. +. +...
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~ 266 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED 266 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 4688999999999887521 11112 35677788888 6876544333222 11 11 2233
Q ss_pred HHHHHHHHhhcchhhHHHHHHHhhhCcChhHHHHHhhhhhcc---CC--CCHHHHHHHHHH----cCCCC------ccce
Q 043926 60 WENAIKKLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFL---NG--EDVYSVMKFLDT----SGFYP------EIGI 124 (164)
Q Consensus 60 w~~~l~~l~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp---~~--~~~~~l~~lw~~----~g~~~------~~~l 124 (164)
...+...... ..+.-.+..|+++.+.++..++.+. .+ .+...+...+.. .|..+ ..++
T Consensus 267 v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 339 (389)
T 1fnn_A 267 VRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYL 339 (389)
T ss_dssp HHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 3333322211 1123335678888888888888664 22 355555444333 33222 1367
Q ss_pred -Eecccccceee-C-------CeEe-------ecHHHHHHHHHHHhhc
Q 043926 125 -ILIDKSLIAVS-C-------NKIT-------MHDLLQGLGREIVQQK 156 (164)
Q Consensus 125 -~L~~~~Ll~~~-~-------~~~~-------mHdl~r~~a~~~~~~e 156 (164)
.|.++++|... . |+|+ .|+++..+...+..+|
T Consensus 340 ~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 340 NDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 89999999875 3 3332 4577777776666554
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.71 E-value=23 Score=26.53 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=75.0
Q ss_pred CCCCCHHHHHHHHHHhhc---CCCCCCchHHHHHHHHHHHhc---CChhHH-HHHhhhhc-----c---CCHHHHHHHHH
Q 043926 1 MKALMFNHALELFSRHAL---RQNYPDVGYEELSRKVMEYAQ---GVPSAL-KVLGCFLF-----E---REKEVWENAIK 65 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~iv~~c~---glPLAl-~~~g~~l~-----~---~~~~~w~~~l~ 65 (164)
+++++.++..+++.+.+. ...... .+..+.+++.++ |.|..+ .++..... + -+...+..+++
T Consensus 194 l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 194 FPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp ECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 468999999999998642 111222 355667777777 988744 33322211 1 13444544444
Q ss_pred HHhhcchhhHHHHHHHhhhCcChhHHHHHhhhhhccC-C---CCHHHH----HHHHHHcCCCC------ccce-Eecccc
Q 043926 66 KLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLN-G---EDVYSV----MKFLDTSGFYP------EIGI-ILIDKS 130 (164)
Q Consensus 66 ~l~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~-~---~~~~~l----~~lw~~~g~~~------~~~l-~L~~~~ 130 (164)
... ...+.-++..||+..+..+..++...+ + ++...+ ..+-...|..+ ..++ .|.+.+
T Consensus 271 ~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~g 343 (386)
T 2qby_A 271 EIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVG 343 (386)
T ss_dssp HHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Confidence 332 234666778899988888887775432 2 233333 22222233322 2367 899999
Q ss_pred cceee------CCeEeec
Q 043926 131 LIAVS------CNKITMH 142 (164)
Q Consensus 131 Ll~~~------~~~~~mH 142 (164)
+++.. .|+|+.+
T Consensus 344 li~~~~~~~~~~g~y~~~ 361 (386)
T 2qby_A 344 ILTAKVVNRGRYGKTKEI 361 (386)
T ss_dssp SEEEEECCCTTSCCCEEE
T ss_pred CEEEEeecCCCCCCeEEE
Confidence 99774 3556665
No 12
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=68.91 E-value=14 Score=21.35 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=39.4
Q ss_pred cCChhHHHHHhhhhccCCHHHHHHHHHHHhhcch-hhHHHHHHHhhhCcChhHHHHHh
Q 043926 39 QGVPSALKVLGCFLFEREKEVWENAIKKLRRILH-PSIQEVLKLSYDGLDDKEKNIFL 95 (164)
Q Consensus 39 ~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~-~~l~~~l~~sy~~L~~~~k~~fl 95 (164)
||.|.....+...+-+ +..+....+..+...+. .....-++-.+|.|+++.|.-+.
T Consensus 1 ~~Cpal~~~v~~~l~~-s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~ 57 (70)
T 1utg_A 1 GICPRFAHVIENLLLG-TPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIM 57 (70)
T ss_dssp CCCHHHHHHHHHHHHS-CHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCchhHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5778888888888877 66667777776665443 44456678888888887665443
No 13
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.41 E-value=37 Score=24.71 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChh-HHHHHhh
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPS-ALKVLGC 50 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPL-Al~~~g~ 50 (164)
+.+++.++..+++.+.+....... -.+....+++.|+|-|. |+..+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 468899999999988763222111 13567789999999995 4444433
No 14
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=60.35 E-value=24 Score=20.85 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=37.3
Q ss_pred cCChhHHHHHhhhhccCCHHHHHHHHHHHhhcch-hhHHHHHHHhhhCcChhHHHHH
Q 043926 39 QGVPSALKVLGCFLFEREKEVWENAIKKLRRILH-PSIQEVLKLSYDGLDDKEKNIF 94 (164)
Q Consensus 39 ~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~-~~l~~~l~~sy~~L~~~~k~~f 94 (164)
+|.|.....+...+-+ +..+....+..+...+. .....-++-++|.|+++.|.-+
T Consensus 3 ~iCpal~~~v~~~l~~-s~~~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i 58 (77)
T 1ccd_A 3 DICPGFLQVLEALLLG-SESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINI 58 (77)
T ss_dssp TSCHHHHHHHHHHTTS-CHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccchhHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5788888888888877 66667666666554443 3445567777777777655543
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=50.46 E-value=31 Score=23.22 Aligned_cols=47 Identities=6% Similarity=-0.141 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHh
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLG 49 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g 49 (164)
+.+++.++..+++.+.+....... -.+..+.+++.++|.|..+..+-
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 467899999999988763222111 13556778899999998654433
No 16
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=49.16 E-value=26 Score=21.56 Aligned_cols=56 Identities=21% Similarity=0.236 Sum_probs=33.2
Q ss_pred HhcCChhHHHHHhhhhccCCHHHHHHHHHHHhhcch-hhHHHHHHHhhhCcChhHHHH
Q 043926 37 YAQGVPSALKVLGCFLFEREKEVWENAIKKLRRILH-PSIQEVLKLSYDGLDDKEKNI 93 (164)
Q Consensus 37 ~c~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~-~~l~~~l~~sy~~L~~~~k~~ 93 (164)
.|++.|.-...+...+-+. .+.....++.+...+. ..-..-++-.+|.|+++.|.-
T Consensus 20 ~~~~Cp~l~~~v~~fl~~S-~~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~ 76 (96)
T 1utr_A 20 SSDICPGFLQVLEALLLGS-ESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRIN 76 (96)
T ss_dssp ---CCSTTHHHHHHHTTCC-SSHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3667888888888888773 3555565665544333 233455666777777665543
No 17
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=48.83 E-value=80 Score=23.45 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=72.9
Q ss_pred CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CChh-HHHHHhhhhc-----c---CCHHHHHHHHH
Q 043926 1 MKALMFNHALELFSRHA---LRQNYPDVGYEELSRKVMEYAQ---GVPS-ALKVLGCFLF-----E---REKEVWENAIK 65 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~iv~~c~---glPL-Al~~~g~~l~-----~---~~~~~w~~~l~ 65 (164)
+++++.++..+++.+.+ +......+ +..+.+++.++ |.|- ++.++..... + -+...+..+++
T Consensus 198 l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 198 FPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp BCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 46889999999999874 22222222 34566777887 9984 3333322211 1 14555555555
Q ss_pred HHhhcchhhHHHHHHHhhhCcChhHHHHHhhhhhccCC---CCHHHHHHH----HHHcCCCC------ccce-Eeccccc
Q 043926 66 KLRRILHPSIQEVLKLSYDGLDDKEKNIFLDVACFLNG---EDVYSVMKF----LDTSGFYP------EIGI-ILIDKSL 131 (164)
Q Consensus 66 ~l~~~~~~~l~~~l~~sy~~L~~~~k~~fl~~a~fp~~---~~~~~l~~l----w~~~g~~~------~~~l-~L~~~~L 131 (164)
... ...+.-++..|+++.+..++.++...++ +....+.+. ....|..+ ..++ .|...++
T Consensus 275 ~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gl 347 (387)
T 2v1u_A 275 EIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGI 347 (387)
T ss_dssp HHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTS
T ss_pred HHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 432 2345667889999888888877743323 334433332 22234322 1357 8999999
Q ss_pred ceee
Q 043926 132 IAVS 135 (164)
Q Consensus 132 l~~~ 135 (164)
++..
T Consensus 348 i~~~ 351 (387)
T 2v1u_A 348 VKSR 351 (387)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9874
No 18
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=48.35 E-value=11 Score=17.12 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=12.9
Q ss_pred cCChhHHHHHhhhhcc
Q 043926 39 QGVPSALKVLGCFLFE 54 (164)
Q Consensus 39 ~glPLAl~~~g~~l~~ 54 (164)
..+|||..++++.+..
T Consensus 9 rklplavav~agv~~a 24 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCTHHHHHHHHTTCC
T ss_pred ccCchHHHHHHHHhHh
Confidence 4689999999987754
No 19
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=40.58 E-value=82 Score=21.22 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=35.3
Q ss_pred cCChhHHHHHhhhhccCCHHHHHHHHHHHhhcch-hhHHHHHHHhhh-CcChhHHHH
Q 043926 39 QGVPSALKVLGCFLFEREKEVWENAIKKLRRILH-PSIQEVLKLSYD-GLDDKEKNI 93 (164)
Q Consensus 39 ~glPLAl~~~g~~l~~~~~~~w~~~l~~l~~~~~-~~l~~~l~~sy~-~L~~~~k~~ 93 (164)
+|.|.....+...+-+ +..+....++++...+. .....-++-++| .|+++.|.-
T Consensus 2 ~iCPAL~~vV~~fL~g-S~eeYk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~n 57 (153)
T 1zkr_A 2 EICPAVKRDVDLFLTG-TPDEYVEQVAQYKALPVVLENARILKNCVDAKMTEEDKEN 57 (153)
T ss_dssp CCCHHHHHHHHHHHHS-CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CcchhHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHH
Confidence 5778888888888877 56667777776665443 334455666777 676655443
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=34.40 E-value=1.2e+02 Score=21.99 Aligned_cols=50 Identities=14% Similarity=-0.046 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHhhhh
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLGCFL 52 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g~~l 52 (164)
+.+++.+|...++.+.+....... -.+..+.+++.|+|.|-.+..+...+
T Consensus 165 l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 165 LEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 467888999999888763322222 13567889999999998877665544
No 21
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=31.73 E-value=36 Score=23.30 Aligned_cols=41 Identities=7% Similarity=-0.032 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHcCCCCccce-EecccccceeeCCeEeecHH
Q 043926 104 EDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVSCNKITMHDL 144 (164)
Q Consensus 104 ~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~~~~~~mHdl 144 (164)
++...+..+....--.....+ .|.+.++|....+++.++|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d~ 206 (213)
T 1o5l_A 165 VTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLKN 206 (213)
T ss_dssp ------------------------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEech
Confidence 455555555544333334467 89999998876666777664
No 22
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=27.06 E-value=10 Score=21.32 Aligned_cols=52 Identities=6% Similarity=0.019 Sum_probs=33.1
Q ss_pred HHHhhhhhccCCCCHHHHHHHHHHcCCCCccce-EecccccceeeCCeEeecH
Q 043926 92 NIFLDVACFLNGEDVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVSCNKITMHD 143 (164)
Q Consensus 92 ~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~~~~~~mHd 143 (164)
..+..++.+++|.+...+..-....--.++..| .|.+.+-+.....||+|-+
T Consensus 7 aLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKRsSRYrlkp 59 (68)
T 3i71_A 7 ELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSRYRLKP 59 (68)
T ss_dssp HHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCEEEECC
T ss_pred HHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhhccccccCc
Confidence 456677888899887776655422111234456 7777777776677888754
No 23
>2h8b_B Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_B 2k6u_B
Probab=22.99 E-value=61 Score=15.56 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcCC
Q 043926 28 EELSRKVMEYAQGV 41 (164)
Q Consensus 28 ~~~~~~iv~~c~gl 41 (164)
.+..+.++..|||.
T Consensus 12 r~~vRa~I~vCG~s 25 (31)
T 2h8b_B 12 HHFVRALVRVCGGP 25 (31)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCC
Confidence 46778899999874
No 24
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=22.83 E-value=22 Score=24.21 Aligned_cols=45 Identities=9% Similarity=0.122 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHcCCCCccce-EecccccceeeCCeEeecHH--HHHHH
Q 043926 105 DVYSVMKFLDTSGFYPEIGI-ILIDKSLIAVSCNKITMHDL--LQGLG 149 (164)
Q Consensus 105 ~~~~l~~lw~~~g~~~~~~l-~L~~~~Ll~~~~~~~~mHdl--~r~~a 149 (164)
+...+..+....--.-...+ .|.+.++|....+++.+.|. ++++|
T Consensus 165 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 165 RHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIA 212 (216)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHh
Confidence 56666665532211112246 88899999887888888874 45554
No 25
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=22.10 E-value=2.2e+02 Score=20.37 Aligned_cols=47 Identities=13% Similarity=-0.027 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCChhHHHHHh
Q 043926 1 MKALMFNHALELFSRHALRQNYPDVGYEELSRKVMEYAQGVPSALKVLG 49 (164)
Q Consensus 1 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~iv~~c~glPLAl~~~g 49 (164)
+.+++.++...++.+.+....... -.+..+.+++.++|-|..+..+-
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLEL--TEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCEE--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHCCCCHHHHHHHH
Confidence 467899999999988763322211 13567788899999988655443
Done!