BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043927
         (109 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I00|A Chain A, Crystal Structure Of The Huntingtin Interacting Protein
          1 Coiled Coil Domain
 pdb|3I00|B Chain B, Crystal Structure Of The Huntingtin Interacting Protein
          1 Coiled Coil Domain
          Length = 120

 Score = 29.6 bits (65), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 11 NHASGGPPTGGSNDALYRELWHACAG---PLATLPCEGQRVYYFPQGHMEQLEASM--HQ 65
          N  S         D L   L+   +G    L  +  E QRV    +GH+ +LEA +   Q
Sbjct: 1  NFNSQNGVNKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60

Query: 66 ELEQQ 70
           L QQ
Sbjct: 61 HLRQQ 65


>pdb|2QA7|A Chain A, Crystal Structure Of Huntingtin-Interacting Protein 1
          (Hip1) Coiled-Coil Domain With A Basic Surface Suitable
          For Hip-Protein Interactor (Hippi)
 pdb|2QA7|B Chain B, Crystal Structure Of Huntingtin-Interacting Protein 1
          (Hip1) Coiled-Coil Domain With A Basic Surface Suitable
          For Hip-Protein Interactor (Hippi)
 pdb|2QA7|C Chain C, Crystal Structure Of Huntingtin-Interacting Protein 1
          (Hip1) Coiled-Coil Domain With A Basic Surface Suitable
          For Hip-Protein Interactor (Hippi)
 pdb|2QA7|D Chain D, Crystal Structure Of Huntingtin-Interacting Protein 1
          (Hip1) Coiled-Coil Domain With A Basic Surface Suitable
          For Hip-Protein Interactor (Hippi)
          Length = 114

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 26 LYRELWHACAGPLATLPCEGQRVYYFPQGHMEQLEASM--HQELEQQ 70
          LYRE+       L  +  E QRV    +GH+ +LEA +   Q L QQ
Sbjct: 13 LYREIS-GLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQ 58


>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
           (Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
           Resolution
 pdb|3PJ0|B Chain B, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
           (Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
           Resolution
 pdb|3PJ0|C Chain C, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
           (Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
           Resolution
 pdb|3PJ0|D Chain D, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
           (Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
           Resolution
          Length = 359

 Score = 26.6 bits (57), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 44  EGQRVYYFPQGHMEQLEASMHQELEQQMPSFNLPSKILCKVVNVQRRAEP 93
           E +RV Y P  H+E  E    +EL+Q  P     +  L  + +++   EP
Sbjct: 88  ENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTANQLLTIDDIKSLREP 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,665,002
Number of Sequences: 62578
Number of extensions: 136268
Number of successful extensions: 269
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 3
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)