Query 043927
Match_columns 109
No_of_seqs 120 out of 279
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:35:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2a_A P-coumaric acid decarbo 17.7 29 0.00099 26.5 0.2 53 46-100 105-168 (194)
2 2dyq_A Amyloid beta A4 precurs 13.7 81 0.0028 22.5 1.7 30 78-108 80-109 (144)
3 2cav_A Protein (canavalin); vi 13.6 60 0.002 26.7 1.1 12 46-57 343-354 (445)
4 3kgl_A Cruciferin; 11S SEED gl 12.8 66 0.0022 27.0 1.1 11 47-57 376-386 (466)
5 3ksc_A LEGA class, prolegumin; 12.6 67 0.0023 27.1 1.1 11 47-57 411-421 (496)
6 2e9q_A 11S globulin subunit be 12.1 71 0.0024 26.5 1.1 15 47-61 375-389 (459)
7 2ea7_A 7S globulin-1; beta bar 11.9 73 0.0025 26.0 1.1 13 46-58 330-342 (434)
8 3qr8_A GPV, baseplate assembly 11.9 1E+02 0.0036 22.3 1.9 22 38-59 57-79 (211)
9 3u5e_d L34, YL28, 60S ribosoma 11.6 3.9E+02 0.013 18.4 4.6 35 75-109 66-100 (113)
10 1uij_A Beta subunit of beta co 11.5 77 0.0026 25.6 1.1 13 47-59 315-327 (416)
No 1
>2w2a_A P-coumaric acid decarboxylase; lyase, active site, coumaric acids, decarboxylation, catalyt mechanism; 1.38A {Lactobacillus plantarum} PDB: 2w2b_A 2w2f_A 2gc9_A* 2wsj_A
Probab=17.71 E-value=29 Score=26.51 Aligned_cols=53 Identities=13% Similarity=0.367 Sum_probs=29.9
Q ss_pred CeEEEecCchHHHHhhhh---hhhh------hhhCCCCCCCCcceEEEEEeeeecc--CCCCeeee
Q 043927 46 QRVYYFPQGHMEQLEASM---HQEL------EQQMPSFNLPSKILCKVVNVQRRAE--PETDEVYA 100 (109)
Q Consensus 46 s~V~YFPQGH~Eq~~as~---~~~~------~~~~p~~~lP~~ilCrV~~V~L~AD--~~TDEVYA 100 (109)
..|++||+||.|+-+-.. |.-+ ...=|. .|-.+.=-...|.+.-| ++.|+|.+
T Consensus 105 t~VIfFpkw~~~~pe~tvc~qnd~i~~m~~~r~~g~~--yp~~vv~EfA~It~~~~~g~~~~~vi~ 168 (194)
T 2w2a_A 105 HGTIFFPKWVEEHPEITVTYQNEHIDLMEQSREKYAT--YPKLVVPEFANITYMGDAGQNNEDVIS 168 (194)
T ss_dssp EEEEEECHHHHHCGGGGCSBGGGCHHHHHHHHHHSCC--CSCEEEEEEEEEEEEEECCSSCTTTTC
T ss_pred EEEEEccchHhhCCceeEecCccHHHHHHHHHHhCCC--CCeEecccceEEEEehhcCCCchhhee
Confidence 568999999999876641 2111 111233 34556656666666544 44555543
No 2
>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}
Probab=13.73 E-value=81 Score=22.46 Aligned_cols=30 Identities=13% Similarity=-0.001 Sum_probs=24.7
Q ss_pred CcceEEEEEeeeeccCCCCeeeeEEEeeeCC
Q 043927 78 SKILCKVVNVQRRAEPETDEVYAQITLLPEP 108 (109)
Q Consensus 78 ~~ilCrV~~V~L~AD~~TDEVYAqi~L~P~~ 108 (109)
...-|||-+|.|.+.+.....||=|+ .|.+
T Consensus 80 ~l~~c~vr~ISFcgvgkd~r~FaFI~-~~~~ 109 (144)
T 2dyq_A 80 PLWQCPVRLVTFIGVGRDPHTFGLIA-DLGR 109 (144)
T ss_dssp CSSEEEGGGEEEEEECSSTTEEEEEE-ECSS
T ss_pred eeeeceEEEEeeeecCCCCcEEEEEE-eCCC
Confidence 34579999999999988889999988 5543
No 3
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=13.64 E-value=60 Score=26.65 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=9.9
Q ss_pred CeEEEecCchHH
Q 043927 46 QRVYYFPQGHME 57 (109)
Q Consensus 46 s~V~YFPQGH~E 57 (109)
-.|+||||||.-
T Consensus 343 GdV~vvP~g~~h 354 (445)
T 2cav_A 343 GDIIVIPSSFPV 354 (445)
T ss_dssp TCEEEECTTCCE
T ss_pred CcEEEEcCCcEE
Confidence 458999999884
No 4
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=12.75 E-value=66 Score=26.95 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=9.0
Q ss_pred eEEEecCchHH
Q 043927 47 RVYYFPQGHME 57 (109)
Q Consensus 47 ~V~YFPQGH~E 57 (109)
-|+|||+||.-
T Consensus 376 DV~v~P~G~~H 386 (466)
T 3kgl_A 376 QLLSIPQGFSV 386 (466)
T ss_dssp CEEEECTTCEE
T ss_pred cEEEECCCCeE
Confidence 38899999874
No 5
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=12.58 E-value=67 Score=27.12 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=8.9
Q ss_pred eEEEecCchHH
Q 043927 47 RVYYFPQGHME 57 (109)
Q Consensus 47 ~V~YFPQGH~E 57 (109)
-|+|||+||.-
T Consensus 411 DV~v~P~G~~H 421 (496)
T 3ksc_A 411 RALTVPQNYAV 421 (496)
T ss_dssp CEEEECTTCEE
T ss_pred eEEEECCCCEE
Confidence 37899999874
No 6
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=12.12 E-value=71 Score=26.46 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=10.7
Q ss_pred eEEEecCchHHHHhh
Q 043927 47 RVYYFPQGHMEQLEA 61 (109)
Q Consensus 47 ~V~YFPQGH~Eq~~a 61 (109)
-|+|||+||.--..+
T Consensus 375 Dv~v~P~G~~H~~~n 389 (459)
T 2e9q_A 375 QVLMIPQNFVVIKRA 389 (459)
T ss_dssp CEEEECTTCEEEEEE
T ss_pred cEEEECCCCEEEEEe
Confidence 478999999854333
No 7
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=11.89 E-value=73 Score=26.00 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=10.1
Q ss_pred CeEEEecCchHHH
Q 043927 46 QRVYYFPQGHMEQ 58 (109)
Q Consensus 46 s~V~YFPQGH~Eq 58 (109)
--|+|||+||.--
T Consensus 330 Gdv~vvP~g~~h~ 342 (434)
T 2ea7_A 330 DDVFVIPAAYPVA 342 (434)
T ss_dssp TCEEEECTTCCEE
T ss_pred CcEEEECCCCeEE
Confidence 3589999999853
No 8
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=11.86 E-value=1e+02 Score=22.29 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=17.2
Q ss_pred CCCCCCCCCeE-EEecCchHHHH
Q 043927 38 LATLPCEGQRV-YYFPQGHMEQL 59 (109)
Q Consensus 38 lv~lP~vgs~V-~YFPQGH~Eq~ 59 (109)
...+|.+|+.| +.||.|..++.
T Consensus 57 ~~~~P~vGeqV~v~f~~Gd~~~g 79 (211)
T 3qr8_A 57 TWWAPSVGEQVLILAVGGELDTA 79 (211)
T ss_dssp CCCCCCTTCEEEEEECCTTTCCE
T ss_pred eEeCCCCCCEEEEEeCCCccCcc
Confidence 45799999875 67899988764
No 9
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=11.59 E-value=3.9e+02 Score=18.40 Aligned_cols=35 Identities=3% Similarity=0.167 Sum_probs=22.7
Q ss_pred CCCCcceEEEEEeeeeccCCCCeeeeEEEeeeCCC
Q 043927 75 NLPSKILCKVVNVQRRAEPETDEVYAQITLLPEPD 109 (109)
Q Consensus 75 ~lP~~ilCrV~~V~L~AD~~TDEVYAqi~L~P~~~ 109 (109)
+.|.+|--|++.-+=--|-..+..|.-++.+|+++
T Consensus 66 nvP~rIrVrlsRk~nededs~~klytlvt~v~v~t 100 (113)
T 3u5e_d 66 GVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVAS 100 (113)
T ss_dssp CCCSEEEEEEEEEECCSSCCSSSEEEEEEECCCSC
T ss_pred CCCceEEEEEEEecCCCCCCccccEEEEEEEEcCC
Confidence 56777765555443333334467899999999763
No 10
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=11.46 E-value=77 Score=25.62 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=10.1
Q ss_pred eEEEecCchHHHH
Q 043927 47 RVYYFPQGHMEQL 59 (109)
Q Consensus 47 ~V~YFPQGH~Eq~ 59 (109)
-|+|||+||.--.
T Consensus 315 dv~vvP~g~~h~~ 327 (416)
T 1uij_A 315 DVFVIPAAYPFVV 327 (416)
T ss_dssp CEEEECTTCCEEE
T ss_pred cEEEECCCCeEEE
Confidence 4889999998533
Done!