BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043928
(192 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 6 LDIQGNNMKVTVVDHAALI--DDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAG 63
L G+ +V VV + I D + L A R G D+ F+ +CT++ LI G
Sbjct: 238 LAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYG 297
Query: 64 NRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKV 101
R ++ + H SL K ET + EM+G V
Sbjct: 298 GRPVMWKTGH------SLIKKKMKETGALLAGEMSGHV 329
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 6 LDIQGNNMKVTVVDHAALI--DDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAG 63
L G+ +V VV + I D + L A R G D+ F+ +CT++ LI G
Sbjct: 238 LAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYG 297
Query: 64 NRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKV 101
R ++ + H SL K ET + EM+G V
Sbjct: 298 GRPVMWKTGH------SLIKKKMKETGALLAGEMSGHV 329
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 6 LDIQGNNMKVTVVDHAALI--DDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAG 63
L G+ +V VV + I D + L A R G D+ F+ +CT++ LI G
Sbjct: 239 LAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYG 298
Query: 64 NRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKV 101
R ++ + H SL K ET + EM+G V
Sbjct: 299 GRPVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 6 LDIQGNNMKVTVVDHAALI--DDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAG 63
L G+ +V VV + I D + L A R G D+ F+ +CT++ LI G
Sbjct: 239 LAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYG 298
Query: 64 NRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKV 101
R ++ + H SL K ET + EM+G V
Sbjct: 299 GRPVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 6 LDIQGNNMKVTVVDHAALI--DDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAG 63
L G+ +V VV + I D + L A R G D+ F+ +CT++ LI G
Sbjct: 239 LAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYG 298
Query: 64 NRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKV 101
R ++ + H SL K ET + EM+G V
Sbjct: 299 GRPVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 6 LDIQGNNMKVTVVDHAALI--DDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAG 63
L G+ +V VV + I D + L A R G D+ F+ +CT++ LI G
Sbjct: 239 LAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYG 298
Query: 64 NRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKV 101
R ++ + H SL K ET + EM+G V
Sbjct: 299 GRPVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 6 LDIQGNNMKVTVVDHAALI--DDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLILCAG 63
L G+ +V VV + I D + L A R G D+ F+ +CT++ LI G
Sbjct: 239 LAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYG 298
Query: 64 NRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKV 101
R ++ + H SL K ET + EM+G V
Sbjct: 299 GRPVMWKTGH------SLIKKKMKETGALLAGEMSGHV 330
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 66 CLIIQLCHLGQIPESLKKFLADET 89
CL+++LCH G + + L F+ D T
Sbjct: 104 CLVMELCHGGHLLDKLNVFIDDST 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,287,048
Number of Sequences: 62578
Number of extensions: 193876
Number of successful extensions: 549
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 8
length of query: 192
length of database: 14,973,337
effective HSP length: 93
effective length of query: 99
effective length of database: 9,153,583
effective search space: 906204717
effective search space used: 906204717
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)