BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043928
         (192 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5UQM4|YR431_MIMIV Putative 3'-5' exonuclease R431 OS=Acanthamoeba polyphaga mimivirus
           GN=MIMI_R431 PE=4 SV=1
          Length = 399

 Score = 43.1 bits (100), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 25/189 (13%)

Query: 11  NNMKVTVVDHAALIDD----NVAALKALLKRQRVVGIDVK-FNHRCTKKAEMLILCAGNR 65
           NN+ + V     ++D+    N+  LK     Q ++G+D +      ++K  ++ L     
Sbjct: 108 NNLDIIVTSDFQIVDNWIENNIYDLK-----QEIIGLDTETLISGKSEKISIIQLSTSKH 162

Query: 66  CLIIQLCHLGQIPESLKKFLADETICFVG--IEMNGK--VDGLGRCNLRCKTAVELGHFA 121
            +IIQ+  +  +P++L K   DE+I  VG  I+++ K  +      N + K  ++L    
Sbjct: 163 NIIIQVNQMNTLPQNLNKVFFDESIIKVGVAIDIDAKKLLQYFPTIN-QIKKTLDLSDLF 221

Query: 122 ARVLKKPHIS-----SFGLAKLAREV---GIHNSLASGFNGYAPSWSARAFSNEQIKFAV 173
            +     HIS     S GL  LA  V    I N   S       +W+    +++Q+K+A+
Sbjct: 222 KQTNFTKHISINPKESIGLKILAAHVLDLYIENKGDSEIK--KSNWNNPVLTSDQVKYAI 279

Query: 174 HEAFAYYVI 182
            +++   +I
Sbjct: 280 TDSYLSLMI 288


>sp|Q84LH3|WEX_ARATH Werner Syndrome-like exonuclease OS=Arabidopsis thaliana GN=WEX
           PE=1 SV=1
          Length = 288

 Score = 38.9 bits (89), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 17/150 (11%)

Query: 41  VGIDVKFNHRCTKK------AEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVG 94
           VG+D+++     K       A + I    N C ++ + H G IP+SL+  + D T+  VG
Sbjct: 130 VGLDIEWRPSFRKGVLPGKVATVQICVDSNYCDVMHIFHSG-IPQSLQHLIEDSTLVKVG 188

Query: 95  IEMNG-KVDGLGRCNLRCKTAVELGHFAARVL---KKPHISSFGLAKLAREVGIHNSLAS 150
           I ++G  V       +  K   +L   A + +   KK  ++S     + +E+   N +  
Sbjct: 189 IGIDGDSVKLFHDYGVSIKDVEDLSDLANQKIGGDKKWGLASLTETLVCKELLKPNRIRL 248

Query: 151 GFNGYAPSWSARAFSNEQIKFAVHEAFAYY 180
           G      +W     S +Q+++A  +A+A +
Sbjct: 249 G------NWEFYPLSKQQLQYAATDAYASW 272


>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
           GN=wrn PE=2 SV=1
          Length = 1436

 Score = 36.6 bits (83), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 6/102 (5%)

Query: 31  LKALLKRQRVVGIDVKFNHRCTK----KAEMLILCAGNR-CLIIQLCHLGQIPESLKKFL 85
           +++ L  + V+G D+++    TK    K  ++ +C   + C +  +  +   P+ LK+ L
Sbjct: 63  IRSSLLEEDVLGFDIEWPPVYTKGKTGKVALIQVCVSEKKCYLFHISPMAGFPKGLKRLL 122

Query: 86  ADETICFVGIEMNG-KVDGLGRCNLRCKTAVELGHFAARVLK 126
            DE++  VG+ + G +   +    L+ K  +EL   A + L+
Sbjct: 123 EDESVRKVGVGIEGDQWKLMSDYELKLKGFIELSEMANQKLR 164


>sp|Q9NVH0|EXD2_HUMAN Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens
           GN=EXD2 PE=1 SV=2
          Length = 621

 Score = 32.3 bits (72), Expect = 1.8,   Method: Composition-based stats.
 Identities = 40/171 (23%), Positives = 72/171 (42%), Gaps = 9/171 (5%)

Query: 14  KVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHRCTKKAEMLIL---CAGNRCLIIQ 70
           KV  V   A  D     L++ L+   V+GID ++ +   K + + +L        C++++
Sbjct: 78  KVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLSLLQMASPSGLCVLVR 137

Query: 71  L----CHLGQIPESLKKFLADETICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVL 125
           L    C    +P +L   LAD TI  VG+  +     L +   L  +  ++L + A R  
Sbjct: 138 LPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLVVRGCLDLRYLAMRQR 197

Query: 126 KKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEA 176
                +   L  LA  V ++  L         +W A   + +Q+ +A  +A
Sbjct: 198 NNLLCNGLSLKSLAETV-LNFPLDKSLLLRCSNWDAETLTEDQVIYAARDA 247


>sp|B9E2A2|BIOB_CLOK1 Biotin synthase OS=Clostridium kluyveri (strain NBRC 12016) GN=bioB
           PE=3 SV=1
          Length = 334

 Score = 30.4 bits (67), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 19/80 (23%)

Query: 68  IIQLCHLGQIPESLKKFLADETICFVGIE------MNGKVDGLGRCNLRCKTAVELGHFA 121
           I QLCH     ++++ F       F G+E      MN K    GRC   CK   + GH+ 
Sbjct: 35  IKQLCHSA---DNIRDF-------FCGVEVDLCTIMNAKS---GRCTEDCKFCAQSGHYK 81

Query: 122 ARVLKKPHISSFGLAKLARE 141
             V     +S     KLARE
Sbjct: 82  TNVENYELVSKEEALKLARE 101


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,496,345
Number of Sequences: 539616
Number of extensions: 2483809
Number of successful extensions: 6796
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6793
Number of HSP's gapped (non-prelim): 9
length of query: 192
length of database: 191,569,459
effective HSP length: 111
effective length of query: 81
effective length of database: 131,672,083
effective search space: 10665438723
effective search space used: 10665438723
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)