Query 043928
Match_columns 192
No_of_seqs 130 out of 1116
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk0_A Hypothetical protein; h 100.0 1.3E-42 4.3E-47 279.5 12.1 175 8-188 12-205 (206)
2 2e6m_A Werner syndrome ATP-dep 100.0 2.2E-33 7.5E-38 224.8 18.9 178 7-191 12-196 (208)
3 3saf_A Exosome component 10; e 100.0 1.1E-28 3.6E-33 217.3 18.5 165 15-191 110-278 (428)
4 2hbj_A Exosome complex exonucl 99.9 7.3E-27 2.5E-31 204.9 18.5 163 16-190 88-254 (410)
5 1yt3_A Ribonuclease D, RNAse D 99.9 4.1E-26 1.4E-30 197.9 17.8 163 16-190 4-170 (375)
6 3cym_A Uncharacterized protein 99.9 2.8E-22 9.5E-27 177.2 16.4 161 16-190 19-187 (440)
7 2kfn_A Klenow fragment of DNA 99.7 2.7E-15 9.3E-20 137.1 17.8 168 17-191 9-194 (605)
8 3pv8_A DNA polymerase I; DNA p 99.4 1.9E-12 6.5E-17 118.0 12.4 146 39-191 30-182 (592)
9 1x9m_A DNA polymerase; DNA plo 99.2 1.6E-11 5.6E-16 113.9 9.0 147 40-191 1-184 (698)
10 4dfk_A DNA polymerase I, therm 98.5 2E-07 6.8E-12 84.1 6.8 115 39-190 11-128 (540)
11 3v9w_A Ribonuclease T; DEDD nu 98.0 2.4E-05 8.1E-10 62.8 9.1 80 88-190 133-221 (235)
12 2p1j_A POLIII, DNA polymerase 97.8 0.00085 2.9E-08 51.7 14.4 128 37-191 11-177 (186)
13 2gui_A DNA polymerase III epsi 97.4 0.0024 8E-08 49.3 12.1 129 38-191 9-186 (194)
14 1wlj_A Interferon stimulated g 97.4 0.0017 5.8E-08 50.2 10.5 132 38-190 5-169 (189)
15 2f96_A Ribonuclease T; RNAse, 97.3 0.0042 1.4E-07 49.1 12.2 80 88-190 125-213 (224)
16 1w0h_A 3'-5' exonuclease ERI1; 97.1 0.011 3.7E-07 45.8 12.5 90 81-190 92-195 (204)
17 3mxm_B Three prime repair exon 97.0 0.0026 9E-08 51.2 8.0 90 80-189 107-214 (242)
18 1zbh_A 3'-5' exonuclease ERI1; 96.6 0.058 2E-06 44.6 13.7 91 80-190 159-263 (299)
19 2qxf_A Exodeoxyribonuclease I; 96.5 0.045 1.6E-06 48.5 12.8 133 37-189 8-200 (482)
20 1bgx_T TAQ DNA polymerase; DNA 96.3 0.01 3.4E-07 56.1 8.0 116 39-191 305-421 (832)
21 3u3y_B Three prime repair exon 95.8 0.072 2.5E-06 44.7 10.3 90 80-189 107-214 (314)
22 1qht_A Protein (DNA polymerase 95.0 0.4 1.4E-05 44.8 13.4 142 39-187 136-327 (775)
23 1y97_A Three prime repair exon 94.8 0.076 2.6E-06 42.0 7.0 91 80-190 102-210 (238)
24 4gmj_B CCR4-NOT transcription 94.1 0.22 7.6E-06 41.1 8.5 80 86-189 147-244 (285)
25 2xri_A ERI1 exoribonuclease 3; 93.9 0.84 2.9E-05 35.7 11.2 87 81-190 111-214 (224)
26 1zbu_A ERI-1 homolog, 3'-5' ex 93.2 0.3 1E-05 41.3 7.9 91 80-190 209-313 (349)
27 2igi_A Oligoribonuclease; RNAs 90.7 1.5 5E-05 32.8 8.5 82 80-190 87-177 (180)
28 2p51_A SPCC18.06C protein; DED 89.6 5.1 0.00017 33.7 11.6 82 84-189 156-255 (333)
29 3iay_A DNA polymerase delta ca 87.4 6.9 0.00023 37.3 12.3 101 80-186 319-465 (919)
30 3qex_A DNA polymerase, GP43; d 84.1 30 0.001 32.9 15.4 173 8-186 52-338 (903)
31 3cg7_A CRN-4, cell death-relat 83.5 1 3.6E-05 37.2 4.1 90 81-190 102-209 (308)
32 3ikm_A DNA polymerase subunit 82.9 0.68 2.3E-05 44.7 3.0 93 90-187 195-344 (1172)
33 2py5_A DNA polymerase; protein 82.4 9.7 0.00033 34.2 10.3 133 39-186 7-180 (575)
34 2a1r_A Poly(A)-specific ribonu 79.5 3.2 0.00011 36.0 6.0 103 84-190 276-397 (430)
35 1s5j_A DNA polymerase I; repli 75.4 54 0.0019 30.7 14.3 136 38-183 190-386 (847)
36 3d45_A Poly(A)-specific ribonu 75.1 1.7 5.8E-05 38.6 2.9 103 81-190 268-392 (507)
37 3k59_A POL II, DNA polymerase 71.0 30 0.001 32.3 10.5 167 8-186 76-349 (786)
38 3q7c_A Nucleoprotein; deddh ex 67.2 2.9 9.8E-05 33.0 2.3 109 39-147 58-189 (243)
39 2gbz_A Oligoribonuclease; ORN, 62.8 38 0.0013 25.3 8.0 86 80-190 91-181 (194)
40 2d5r_A CCR4-NOT transcription 59.2 32 0.0011 27.5 7.2 82 85-190 136-235 (252)
41 1uoc_A POP2; hydrolase, DEDD n 47.6 69 0.0024 26.1 7.6 84 86-189 152-264 (289)
42 1mhx_A Immunoglobulin-binding 47.3 40 0.0014 20.7 4.5 43 1-49 9-54 (65)
43 1twf_K B13.6, DNA-directed RNA 44.8 31 0.001 24.4 4.4 47 52-98 16-64 (120)
44 3mwp_A Nucleoprotein; structur 41.9 9.1 0.00031 33.5 1.4 109 39-147 392-523 (577)
45 1xpp_A TA1416, DNA-directed RN 40.6 55 0.0019 23.0 5.1 44 55-98 11-56 (115)
46 1noy_A Protein (DNA polymerase 40.3 31 0.0011 29.0 4.6 171 8-186 50-335 (388)
47 2cof_A Protein KIAA1914; PH do 37.5 61 0.0021 21.2 4.9 32 4-35 69-100 (107)
48 2pa8_L DNA-directed RNA polyme 37.3 36 0.0012 22.8 3.6 35 64-98 10-46 (92)
49 3rcp_A Pleckstrin homology dom 34.2 75 0.0026 20.4 4.9 32 4-35 61-92 (103)
50 1o51_A Hypothetical protein TM 34.1 65 0.0022 22.4 4.7 36 11-46 74-109 (114)
51 1wgq_A FYVE, rhogef and PH dom 32.7 82 0.0028 20.5 5.0 32 4-35 71-102 (109)
52 1pls_A Pleckstrin homology dom 30.7 1E+02 0.0034 20.1 5.2 32 4-35 69-100 (113)
53 3cxb_B Pleckstrin homology dom 25.8 95 0.0033 20.7 4.4 32 4-35 69-100 (112)
54 1uoc_A POP2; hydrolase, DEDD n 25.3 68 0.0023 26.2 4.0 27 24-50 24-50 (289)
55 2d9v_A Pleckstrin homology dom 25.0 1.2E+02 0.0039 20.7 4.8 32 4-35 82-113 (130)
56 1u5d_A SKAP55, SRC kinase-asso 23.5 1E+02 0.0034 19.6 4.0 31 4-34 73-103 (108)
57 2d9y_A Pleckstrin homology dom 23.3 1.1E+02 0.0038 19.9 4.3 32 4-35 77-108 (117)
58 2d5r_A CCR4-NOT transcription 22.9 57 0.0019 26.0 3.0 22 29-50 15-36 (252)
59 1wg7_A Dedicator of cytokinesi 22.1 1.2E+02 0.0041 21.0 4.5 32 4-35 92-123 (150)
60 2od5_A Hypothetical protein; m 21.4 72 0.0025 21.7 2.8 22 75-96 45-67 (116)
61 1rbl_M Ribulose 1,5 bisphospha 21.3 1.1E+02 0.0037 21.2 3.8 27 19-45 65-93 (109)
62 3tr8_A Oligoribonuclease; tran 21.0 1.1E+02 0.0037 22.9 4.2 27 80-106 91-121 (186)
63 1svd_M Ribulose bisphosphate c 20.7 1.2E+02 0.0039 21.1 3.9 27 19-45 67-95 (110)
64 2dkp_A Pleckstrin homology dom 20.4 1.2E+02 0.004 20.2 4.0 32 4-35 87-118 (128)
65 3zxw_B Ribulose bisphosphate c 20.2 1.2E+02 0.004 21.4 3.8 27 19-45 64-92 (118)
No 1
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=100.00 E-value=1.3e-42 Score=279.51 Aligned_cols=175 Identities=21% Similarity=0.308 Sum_probs=146.1
Q ss_pred EcCcEEEEE--EeCChHHHHHHHHHHHHhh--cCCcEEEEeeeecCCC--------C--CceeEEEeeeCCeEEEEeccc
Q 043928 8 IQGNNMKVT--VVDHAALIDDNVAALKALL--KRQRVVGIDVKFNHRC--------T--KKAEMLILCAGNRCLIIQLCH 73 (192)
Q Consensus 8 ~~g~~i~v~--vt~~~~~~~~~i~~~~~~~--~~~~vvG~D~Ew~~~~--------~--~~~aliQl~~~~~~~l~~l~~ 73 (192)
.+|+.+.+. .+.+.+++..++..+.+.. ....+||||+||.|.. . +++||||||+++.|+|||+
T Consensus 12 ~~g~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l-- 89 (206)
T 1vk0_A 12 TDGSYVQTKTIDVGSSTDISPYLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRL-- 89 (206)
T ss_dssp TTSCEEEEEEEECCSSCCCHHHHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEEC--
T ss_pred cCCccceeeEEEEecHHHHHHHHHHHHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEec--
Confidence 556654332 3444444555565554322 3457999999999741 2 5899999999999999999
Q ss_pred cCCccHH---HHHhhcCCCeeEEEEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCC
Q 043928 74 LGQIPES---LKKFLADETICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSL 148 (192)
Q Consensus 74 ~~~~p~~---L~~~l~~~~i~kvG~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~ 148 (192)
++.+|+. |.+||+||+|+||||++++|+++|++ ||+.+++++|++.+|+..+|.+...+.||+.|++++ |.++
T Consensus 90 ~~~~~~~L~~L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l-- 167 (206)
T 1vk0_A 90 PKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL-- 167 (206)
T ss_dssp CSSCCGGGHHHHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC--
T ss_pred cccCCccHHHHHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC--
Confidence 3667877 78999999999999999999999999 999999999999998878887655689999999999 9998
Q ss_pred CCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhc
Q 043928 149 ASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLS 188 (192)
Q Consensus 149 ~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~ 188 (192)
|+|++|+|||++ |||++|+.|||.|||++++||++|.+
T Consensus 168 -K~k~~~~SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 168 -GQLDSIEAKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp -HHHHHHHHTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCcccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 347899999999 99999999999999999999999975
No 2
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=100.00 E-value=2.2e-33 Score=224.83 Aligned_cols=178 Identities=21% Similarity=0.334 Sum_probs=156.0
Q ss_pred EEcCcEEEEEEeCChHHHHHHHHHHHHhhcCCcEEEEeeeecCC----CCCceeEEEeeeC-CeEEEEeccccCCccHHH
Q 043928 7 DIQGNNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHR----CTKKAEMLILCAG-NRCLIIQLCHLGQIPESL 81 (192)
Q Consensus 7 ~~~g~~i~v~vt~~~~~~~~~i~~~~~~~~~~~vvG~D~Ew~~~----~~~~~aliQl~~~-~~~~l~~l~~~~~~p~~L 81 (192)
.|.|. +++++++++++.+.+.+.....+..+||||+||.+. ..+++++||||++ +.|++|++.+.+.+|+.|
T Consensus 12 ~f~g~---i~~i~~~~~~~~~~~~~~~~l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~~~~~~L 88 (208)
T 2e6m_A 12 EFPGS---IVYSYEASDCSFLSEDISMRLSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMSVFPQGL 88 (208)
T ss_dssp CCCSE---EEEECSHHHHHHHHHHHHHHCCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCSSCCHHH
T ss_pred ccCCc---EEEEeCHHHHHHHHHHHHHHhccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccccchHHH
Confidence 45665 678999999997776666555567899999999985 3678999999985 589999998777788999
Q ss_pred HHhhcCCCeeEEEEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCC
Q 043928 82 KKFLADETICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSW 159 (192)
Q Consensus 82 ~~~l~~~~i~kvG~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W 159 (192)
+.+|+|++|.||||++++|++.|.+ +|+.+.|++|+..+|...++. ..+.||+.|++++ |..+. |+|+.++|||
T Consensus 89 ~~lL~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~--~~~~~L~~L~~~~l~~~~~--K~k~~~~s~W 164 (208)
T 2e6m_A 89 KMLLENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC--AETWSLNGLVKHVLGKQLL--KDKSIRCSNW 164 (208)
T ss_dssp HHHHTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTC--CCCCCHHHHHHHHHSCBCC--CCHHHHTSCT
T ss_pred HHHhcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccC--CCChhHHHHHHHHcCCCcC--CCCCeeeCCC
Confidence 9999999999999999999999999 999999999998888866663 2478999999999 99998 7777899999
Q ss_pred CcCCCCHHHHHHHHHhHHHHHHHHHHHhcccC
Q 043928 160 SARAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 160 ~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~~ 191 (192)
+.+||+++|+.|||.||++++++|..|.++|.
T Consensus 165 ~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 165 SNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999998875
No 3
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=99.96 E-value=1.1e-28 Score=217.31 Aligned_cols=165 Identities=13% Similarity=0.132 Sum_probs=145.5
Q ss_pred EEEeCChHHHHHHHHHHHHhhcCCcEEEEeeeecCC--CCCceeEEEeeeCCeEEEEeccccCCccHHHHHhhcCCCeeE
Q 043928 15 VTVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICF 92 (192)
Q Consensus 15 v~vt~~~~~~~~~i~~~~~~~~~~~vvG~D~Ew~~~--~~~~~aliQl~~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~k 92 (192)
++++++++.+..|++.+. ...+||||+||.+. ...++++||||+++.+++|++...+.....|+.+|+|++|.|
T Consensus 110 y~~I~t~e~L~~~l~~L~----~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~~l~~L~~lL~dp~i~K 185 (428)
T 3saf_A 110 CHFISSLDELVELNEKLL----NCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPAIVK 185 (428)
T ss_dssp EEEECSHHHHHHHHHHHT----TCSEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGGGGGGGHHHHTCTTSEE
T ss_pred cEEECCHHHHHHHHHHHh----cCCeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchhhHHHHHHHHcCCCceE
Confidence 468899999999999885 46799999999875 568899999999999999998766433468999999999999
Q ss_pred EEEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCcCCCCHHHHH
Q 043928 93 VGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSARAFSNEQIK 170 (192)
Q Consensus 93 vG~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~ 170 (192)
|||++++|+..|.+ +|+.+.+++|++..+. .+|.+ +.||+.|++++ |..++ | ..++|||+.+||+++|+.
T Consensus 186 V~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~-lL~~~---~~gL~~Lv~~~Lg~~l~--K--~~~~sdW~~rpLs~~q~~ 257 (428)
T 3saf_A 186 VFHGADSDIEWLQKDFGLYVVNMFDTHQAAR-LLNLG---RHSLDHLLKLYCNVDSN--K--QYQLADWRIRPLPEEMLS 257 (428)
T ss_dssp EESSCHHHHHHHHHHHCCCCSSEEEHHHHHH-HTTCS---CCSHHHHHHHHHCCCCC--C--TTTTSCTTCSSCCHHHHH
T ss_pred EEeehHHHHHHHHHHcCCCcCceeechhHHH-HhCCC---CCCHHHHHHHHcCCCCC--c--cccccccccCCCCHHHHH
Confidence 99999999999987 9999999999765544 66644 57999999999 99999 4 558999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcccC
Q 043928 171 FAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 171 YAa~Da~~~~~i~~~L~~~~~ 191 (192)
|||.||++++.||+.|..+|.
T Consensus 258 YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 258 YARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp HHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988763
No 4
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.95 E-value=7.3e-27 Score=204.91 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=141.2
Q ss_pred EEeCChHHHHHHHHHHHHhhcCCcEEEEeeeecCC--CCCceeEEEeeeCCeEEEEeccccCCccHHHHHhhcCCCeeEE
Q 043928 16 TVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFV 93 (192)
Q Consensus 16 ~vt~~~~~~~~~i~~~~~~~~~~~vvG~D~Ew~~~--~~~~~aliQl~~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kv 93 (192)
+++++.+++..|++.+. ...+||||+||.+. ..+++++||||+++.|+|++...++..+..|+.+|+|++|.||
T Consensus 88 ~~I~t~~~L~~~~~~L~----~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~~~l~~L~~lL~d~~i~KV 163 (410)
T 2hbj_A 88 IWVDTSTELESMLEDLK----NTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLRENLHILNEVFTNPSIVKV 163 (410)
T ss_dssp EEECSHHHHHHHHHHHT----TCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTTGGGGHHHHTCTTSEEE
T ss_pred EEeCCHHHHHHHHHHHh----hCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhhhhHHHHHHHHcCCCceEE
Confidence 35667888988888664 45799999999986 3678999999999999999965443344689999999999999
Q ss_pred EEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCcCCCCHHHHHH
Q 043928 94 GIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSARAFSNEQIKF 171 (192)
Q Consensus 94 G~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~Y 171 (192)
||++++|+..|.+ +|+.+.+++|++..+. .+|.+ +.||+.|++++ |..++ | ..++|||..|||+++|+.|
T Consensus 164 ~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~-LL~~~---~~~L~~L~~~~lg~~l~--K--~~~~sdW~~rpL~~~q~~Y 235 (410)
T 2hbj_A 164 FHGAFMDIIWLQRDLGLYVVGLFDTYHASK-AIGLP---RHSLAYLLENFANFKTS--K--KYQLADWRIRPLSKPMTAA 235 (410)
T ss_dssp ESSCHHHHHHHHHHHCCCCSSEEEHHHHHH-HHTCS---CCSHHHHHHHHSCCCCC--C--TTTTSCTTCSSCCHHHHHH
T ss_pred EEehHHHHHHHHHHcCCCcCCEEEcHHHHH-HhCCC---ccCHHHHHHHHcCCCCC--c--cccccCCCCCCCCHHHHHH
Confidence 9999999999999 9999999999876554 67643 68999999999 99998 4 5678999999999999999
Q ss_pred HHHhHHHHHHHHHHHhccc
Q 043928 172 AVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 172 Aa~Da~~~~~i~~~L~~~~ 190 (192)
||.||++++.||.+|.++|
T Consensus 236 Aa~Da~~ll~L~~~L~~~L 254 (410)
T 2hbj_A 236 ARADTHFLLNIYDQLRNKL 254 (410)
T ss_dssp HHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876
No 5
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.94 E-value=4.1e-26 Score=197.88 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=140.7
Q ss_pred EEeCChHHHHHHHHHHHHhhcCCcEEEEeeeecCC--CCCceeEEEeeeCCeEEEEeccccCCccHHHHHhhcCCCeeEE
Q 043928 16 TVVDHAALIDDNVAALKALLKRQRVVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFV 93 (192)
Q Consensus 16 ~vt~~~~~~~~~i~~~~~~~~~~~vvG~D~Ew~~~--~~~~~aliQl~~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kv 93 (192)
+++++++.+..|++.+. ...+||||+||.+. ..+++++||||+++.+++++...++ ..+.|+.+|+|++|.||
T Consensus 4 ~~I~t~~~l~~~~~~l~----~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~-~~~~L~~ll~d~~i~Kv 78 (375)
T 1yt3_A 4 QMITTDDALASLCEAVR----AFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT-DWSPLKAILRDPSITKF 78 (375)
T ss_dssp EEECSHHHHHHHHHHHT----TSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS-CCHHHHHHHHCTTSEEE
T ss_pred EEeCCHHHHHHHHHHHc----CCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC-ChHHHHHHHcCCCceEE
Confidence 45667888988888664 45899999999986 3578999999999999999965443 34689999999999999
Q ss_pred EEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCcCCCCHHHHHH
Q 043928 94 GIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSARAFSNEQIKF 171 (192)
Q Consensus 94 G~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~Y 171 (192)
||++++|+..|.+ +|+.+.+++|++..+. .+|.+ .+.||+.|++++ |..++ | ..++|||..+||+++|+.|
T Consensus 79 ~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~-lL~~~--~~~~L~~L~~~~l~~~l~--K--~~~~sdw~~rpL~~~q~~Y 151 (375)
T 1yt3_A 79 LHAGSEDLEVFLNVFGELPQPLIDTQILAA-FCGRP--MSWGFASMVEEYSGVTLD--K--SESRTDWLARPLTERQCEY 151 (375)
T ss_dssp ESSCHHHHHHHHHHHSSCCSSEEEHHHHHH-HTTCC--TTCCHHHHHHHHHCCCCC--C--TTTTSCTTSSSCCHHHHHH
T ss_pred EeeHHHHHHHHHHHcCCCCCcEEEcHHHHH-HcCCC--CChhHHHHHHHHcCCCCC--C--CcccCCCCCCCCCHHHHHH
Confidence 9999999999998 9999999999876554 56643 478999999999 99999 5 4468999999999999999
Q ss_pred HHHhHHHHHHHHHHHhccc
Q 043928 172 AVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 172 Aa~Da~~~~~i~~~L~~~~ 190 (192)
||.||++++.+|..|.++|
T Consensus 152 Aa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 152 AAADVWYLLPITAKLMVET 170 (375)
T ss_dssp HHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876
No 6
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.89 E-value=2.8e-22 Score=177.23 Aligned_cols=161 Identities=14% Similarity=0.213 Sum_probs=134.2
Q ss_pred EEeCChHHHHHHHHHHHHhhcCC-cEEEEeeeecCC--CCCceeEEEeeeCC-eEEEEeccccC---CccHHHHHhhcCC
Q 043928 16 TVVDHAALIDDNVAALKALLKRQ-RVVGIDVKFNHR--CTKKAEMLILCAGN-RCLIIQLCHLG---QIPESLKKFLADE 88 (192)
Q Consensus 16 ~vt~~~~~~~~~i~~~~~~~~~~-~vvG~D~Ew~~~--~~~~~aliQl~~~~-~~~l~~l~~~~---~~p~~L~~~l~~~ 88 (192)
.++++++++..|++.+. .+ .+||||+||.+. ..+++++||||+++ .+++|+..... .-...|+.+|+|+
T Consensus 19 ~~I~t~e~L~~~~~~L~----~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d~ 94 (440)
T 3cym_A 19 NVIDTLPAFRDYCSELA----SSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGDA 94 (440)
T ss_dssp CEECSHHHHHHHHHHHH----SCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTTC
T ss_pred EeeCCHHHHHHHHHHHH----hcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCCC
Confidence 35666889999988764 34 789999999875 36789999999865 58888763321 1246899999997
Q ss_pred CeeEEEEeehhhHHHhhcCCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCcCCCCHH
Q 043928 89 TICFVGIEMNGKVDGLGRCNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSARAFSNE 167 (192)
Q Consensus 89 ~i~kvG~~~~~D~~~L~~~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~~~Ls~~ 167 (192)
.||||++++|+..|..+|+.+.+++|+ .+|...++. . +.||+.|++.+ |..++ | ..++|||..+||+++
T Consensus 95 --~KV~h~~k~Dl~~L~~~gi~~~~~fDt-~lAa~lL~~-~--~~gL~~L~~~~lg~~~~--K--~~~~sdw~~rpLs~~ 164 (440)
T 3cym_A 95 --VWILHDSLQDLPGFDELGMEPQRLFDT-EIAARLLGL-K--RFGLAAVTEHFLGLTLA--K--EHSAADWSYRPLPRD 164 (440)
T ss_dssp --EEEESSHHHHHHHHHHHTCCCCEEEEH-HHHHHHTTC-S--SCSHHHHHHHHHCEECC--C--CCTTCCTTCSSCCHH
T ss_pred --CEEEEcCHHHHHHHHHcCCcCCceehH-HHHHHHhCC-C--CCCHHHHHHHHhCCCcc--c--ccccCCCcCCCCCHH
Confidence 699999999999886699999999998 556657774 2 89999999999 99999 4 457899999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhccc
Q 043928 168 QIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 168 Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
|+.|||.||++++.||..|.++|
T Consensus 165 q~~YAa~Da~~Ll~L~~~L~~~L 187 (440)
T 3cym_A 165 WRNYAALDVELLIELETKMRAEL 187 (440)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998776
No 7
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.66 E-value=2.7e-15 Score=137.15 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=129.0
Q ss_pred EeCChHHHHHHHHHHHHhhcCCcEEEEeeeecCC--CCCceeEEEeee-CCeEEEEecccc-----CCc-----cHHHHH
Q 043928 17 VVDHAALIDDNVAALKALLKRQRVVGIDVKFNHR--CTKKAEMLILCA-GNRCLIIQLCHL-----GQI-----PESLKK 83 (192)
Q Consensus 17 vt~~~~~~~~~i~~~~~~~~~~~vvG~D~Ew~~~--~~~~~aliQl~~-~~~~~l~~l~~~-----~~~-----p~~L~~ 83 (192)
++++++.+..|++.+. ...+++||+|+++. ...+++.||+|. ++.++.+.+.+. +.+ .+.|+.
T Consensus 9 ~I~~~~~l~~~~~~l~----~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~~ 84 (605)
T 2kfn_A 9 TILDEETLKAWIAKLE----KAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84 (605)
T ss_dssp ECCSHHHHHHHHHHHH----TSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHHH
T ss_pred EecCHHHHHHHHHhcc----cCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHHH
Confidence 4556889999988764 34789999999986 357899999997 445555544331 122 146999
Q ss_pred hhcCCCeeEEEEeehhhHHHhhcCCCccCc-EeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCC---CCCcccCC
Q 043928 84 FLADETICFVGIEMNGKVDGLGRCNLRCKT-AVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSLAS---GFNGYAPS 158 (192)
Q Consensus 84 ~l~~~~i~kvG~~~~~D~~~L~~~g~~~~~-~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K---~k~~~~S~ 158 (192)
+|+|+++.||||+++.|+..|.++|+.+.+ ++|+...+. .++ |...+.||..|++++ |......+ .|..+.++
T Consensus 85 ~L~d~~i~kV~hnak~D~~~L~~~Gi~l~~~~~DT~laay-LL~-p~~~~~~L~~La~~~Lg~~~i~~~~~~gKg~~~~~ 162 (605)
T 2kfn_A 85 LLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESY-ILN-SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 162 (605)
T ss_dssp HHTCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHH-HHC-TTSSCCSHHHHHHHHSCCCCCCHHHHHCSSTTCCC
T ss_pred HHcCCCCeEEEECcHHHHHHHHHCCCCCCCccccHHHHHH-HhC-CCCCCCCHHHHHHHhcCCCcccHHHHhCCCcccCC
Confidence 999999999999999999999889998887 799765554 554 544478999999999 98753100 12234579
Q ss_pred CCcCCCCHHHHHHHHHhHHHHHHHHHHHhcccC
Q 043928 159 WSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 159 W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~~ 191 (192)
|...|| ++|.+||+.||++++++|.+|.++|.
T Consensus 163 ~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~ 194 (605)
T 2kfn_A 163 FNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQ 194 (605)
T ss_dssp GGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888 78999999999999999999988775
No 8
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.40 E-value=1.9e-12 Score=118.00 Aligned_cols=146 Identities=13% Similarity=0.007 Sum_probs=117.3
Q ss_pred cEEEEeeeecCC--CCCceeEEEeeeCCeEEEEeccccCCccHHHHHhhcCCCeeEEEEeehhhHHHhhcCCCccC-cEe
Q 043928 39 RVVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCK-TAV 115 (192)
Q Consensus 39 ~vvG~D~Ew~~~--~~~~~aliQl~~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~~~~D~~~L~~~g~~~~-~~~ 115 (192)
.-..+|+|.... ....++.||+|+++.++.+.+.+.. ..+.|+.+|+|+++.||||+++.|+..|.++|+.+. ..+
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~~~-~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~~~Gi~l~g~~f 108 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETAL-ADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSF 108 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHHHT-TCHHHHHHHTCTTSEEEESSHHHHHHHHHHTTCCCCCEEE
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccchhh-HHHHHHHHHhCCCCeEEEechHHHHHHHHHcCCCCCCccc
Confidence 456899998876 5678999999999988888765433 336799999999999999999999999988999886 477
Q ss_pred ehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCc---CCCCHHHHHHHHHhHHHHHHHHHHHhcccC
Q 043928 116 ELGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSA---RAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 116 Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~---~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~~ 191 (192)
|+. +|...++ |...+.||+.|++++ |..+. +. .+..+|.+ .+.+++|..|||.||.+++.++..|..+|.
T Consensus 109 DTm-LAAYLL~-p~~~~~~L~~La~~yLg~~l~--~~--ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 109 DLL-LAAYLLD-PAQGVDDVAAAAKMKQYEAVR--PD--EAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp EHH-HHHHHHC-GGGCCCSHHHHHGGGTCCSSC--CH--HHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHcC-CCCCCCCHHHHHHHHcCCCCc--hH--HHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 954 4544554 444478999999999 99988 43 34567764 456688999999999999999999988763
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.24 E-value=1.6e-11 Score=113.86 Aligned_cols=147 Identities=12% Similarity=0.126 Sum_probs=109.3
Q ss_pred EEEEeeeecCC--CCCceeEEEeeeC--CeEEEEeccccCCccHHHHHhhcCCCeeEEEEee-hhhHHHhhc-C------
Q 043928 40 VVGIDVKFNHR--CTKKAEMLILCAG--NRCLIIQLCHLGQIPESLKKFLADETICFVGIEM-NGKVDGLGR-C------ 107 (192)
Q Consensus 40 vvG~D~Ew~~~--~~~~~aliQl~~~--~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~~-~~D~~~L~~-~------ 107 (192)
+|.||+|.+.. ..++++++|++.. ..+++++....+...+.|.++|+ +++.||||++ +.|+..|.+ +
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~ 79 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLNR 79 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHCC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhcccC
Confidence 48999999876 5679999999994 47888875533223468899999 9999999998 999999988 4
Q ss_pred CCccC--cEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccC------------C----C-----CCCCccc-CCCCcC
Q 043928 108 NLRCK--TAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNS------------L----A-----SGFNGYA-PSWSAR 162 (192)
Q Consensus 108 g~~~~--~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~------------~----~-----K~k~~~~-S~W~~~ 162 (192)
|+.+. .++|....+. .++ |...+.||..|++++ +..|+ . . |.++.+. ++|..
T Consensus 80 Gi~l~~~~~~DTmlaay-LL~-p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~- 156 (698)
T 1x9m_A 80 EFHLPRENCIDTLVLSR-LIH-SNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWN- 156 (698)
T ss_dssp CCCCCGGGEEEHHHHHH-HHT-TTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTS-
T ss_pred CccCCCCcchhHHHHHH-HhC-CCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccc-
Confidence 88766 5899766554 454 433467888888777 32111 0 0 1122122 38974
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHhcccC
Q 043928 163 AFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 163 ~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~~ 191 (192)
+++++.+||+.||.+.+.||.+|..+|.
T Consensus 157 -~~~~~~~YA~~Da~~t~~L~~~L~~~L~ 184 (698)
T 1x9m_A 157 -FNEEMMDYNVQDVVVTKALLEKLLSDKH 184 (698)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999999999999999998774
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=98.47 E-value=2e-07 Score=84.11 Aligned_cols=115 Identities=13% Similarity=0.021 Sum_probs=92.1
Q ss_pred cEEEEeeeecCC--CCCceeEEEeeeCCeEEEEeccccCCccHHHHHhhcCCCeeEEEEeehhhHHHhhcCCCccCcEee
Q 043928 39 RVVGIDVKFNHR--CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVE 116 (192)
Q Consensus 39 ~vvG~D~Ew~~~--~~~~~aliQl~~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~~~~D~~~L~~~g~~~~~~~D 116 (192)
+-+++|+|+... ...+++.||+|.++.++.++ ...+.|+.||+| +.||||+++.|+. ++|+.+...+|
T Consensus 11 ~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~-----~~l~~l~~~l~d--~~kV~hn~K~Dl~---~~Gi~~~~~fD 80 (540)
T 4dfk_A 11 EGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP-----EPYKALRDLKEA--RGLLAKDLSVLAL---REGLGLPPGDD 80 (540)
T ss_dssp TTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS-----SHHHHHTTCSSB--CSTTHHHHHHHHH---HTTCCCCBCCC
T ss_pred CceEEEEEecCCccCcccEEEEEEEcCCEEEEeh-----hhHHHHHHHHcC--CCEEEeccHHHHH---HcCCCCCccee
Confidence 459999999876 56789999999988887665 234679999998 8899999999999 66776667889
Q ss_pred hHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 117 LGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 117 l~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
+...+. .++ |. +.||+.||+++ |. +. | +|+.||.+++++|..|.++|
T Consensus 81 T~laAy-LL~-p~--~~~L~~La~~yl~~-~g--k--------------------~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 81 PMLLAY-LLD-PS--NTTPEGVARRYGGE-WT--E--------------------EAGERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHHHH-HHC-TT--CCCHHHHHHHHTSC-CC--S--------------------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HhC-CC--CCCHHHHHHHHhhh-hc--c--------------------chHHHHHHHHHHHHHHHHHH
Confidence 655543 454 54 78999999999 76 33 2 36789999999999999887
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.02 E-value=2.4e-05 Score=62.76 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCeeEEEEeehhhHHHhhc----CCCcc-----CcEeehHHHHHHHhCCCCcCcccHHHHHHHhCcccCCCCCCCcccCC
Q 043928 88 ETICFVGIEMNGKVDGLGR----CNLRC-----KTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPS 158 (192)
Q Consensus 88 ~~i~kvG~~~~~D~~~L~~----~g~~~-----~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~~K~k~~~~S~ 158 (192)
++.++||+++..|...|.+ +|+.. ...+|+..+++..++ ..+|..|++.+|.+.. .
T Consensus 133 ~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p-----~~~L~~l~~~~gi~~~--~-------- 197 (235)
T 3v9w_A 133 NRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG-----QTVLSKACQTAGMDFD--S-------- 197 (235)
T ss_dssp CEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS-----CCSHHHHHHHHTCCCC--T--------
T ss_pred CCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC-----CCCHHHHHHHcCCCCC--C--------
Confidence 5789999999999999875 68753 357899888876653 3589999998876655 1
Q ss_pred CCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 159 WSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 159 W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.+-++|..||.++.+||.+|.+++
T Consensus 198 --------~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 198 --------TQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp --------TTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCcChHHHHHHHHHHHHHHHHHH
Confidence 224789999999999999998875
No 12
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.81 E-value=0.00085 Score=51.75 Aligned_cols=128 Identities=17% Similarity=0.166 Sum_probs=84.9
Q ss_pred CCcEEEEeeeecCCCCCceeEEEeee----CCeEE-----EEeccccCCcc------------------------HHHHH
Q 043928 37 RQRVVGIDVKFNHRCTKKAEMLILCA----GNRCL-----IIQLCHLGQIP------------------------ESLKK 83 (192)
Q Consensus 37 ~~~vvG~D~Ew~~~~~~~~aliQl~~----~~~~~-----l~~l~~~~~~p------------------------~~L~~ 83 (192)
+..++.||+|.+......-.+||++. ...+. +++... .+| +.+.+
T Consensus 11 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~ 88 (186)
T 2p1j_A 11 DATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEVLPEFLG 88 (186)
T ss_dssp --CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHH
Confidence 35799999999865333345666653 22221 222211 111 23556
Q ss_pred hhcCCCeeEEEEeehhhHHHhhc----CCCcc--CcEeehHHHHHHHhCCCCcCcccHHHHHHHhCcccCCCCCCCcccC
Q 043928 84 FLADETICFVGIEMNGKVDGLGR----CNLRC--KTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAP 157 (192)
Q Consensus 84 ~l~~~~i~kvG~~~~~D~~~L~~----~g~~~--~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~~K~k~~~~S 157 (192)
++.+ -+.||+++..|...|.+ +|+.. ...+|+..+++..++ ..+.+|..+++.+|.+..
T Consensus 89 ~l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~---~~~~~L~~l~~~~gi~~~---------- 153 (186)
T 2p1j_A 89 FLED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLK---LRSYSLDSVVEKLGLGPF---------- 153 (186)
T ss_dssp HSSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTC---CSCCSHHHHHHHTTCCST----------
T ss_pred HHCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhh---cCCCCHHHHHHHcCCCCC----------
Confidence 6764 47899999999999875 46553 478998888876553 237899999986665543
Q ss_pred CCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcccC
Q 043928 158 SWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 158 ~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~~ 191 (192)
+-+.|..||.++.+|+.++.++..
T Consensus 154 ----------~~H~Al~Da~~t~~l~~~l~~~~~ 177 (186)
T 2p1j_A 154 ----------RHHRALDDARVTAQVFLRFVEMMK 177 (186)
T ss_dssp ----------TCCHHHHHHHHHHHHHHHHTTCC-
T ss_pred ----------CCcCHHHHHHHHHHHHHHHHHHHH
Confidence 125789999999999999987653
No 13
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=97.44 E-value=0.0024 Score=49.32 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=84.7
Q ss_pred CcEEEEeeeecCCCC-----CceeEEEeeeC----Ce------EEEEeccccCCcc------------------------
Q 043928 38 QRVVGIDVKFNHRCT-----KKAEMLILCAG----NR------CLIIQLCHLGQIP------------------------ 78 (192)
Q Consensus 38 ~~vvG~D~Ew~~~~~-----~~~aliQl~~~----~~------~~l~~l~~~~~~p------------------------ 78 (192)
..++.||+|++.... ..-.+||++.- +. ..+++... .+|
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v~ 86 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAEVA 86 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHHHH
Confidence 368999999987533 34677888731 11 22333221 111
Q ss_pred HHHHHhhcCCCeeEEEEeehhhHHHhhc----CCCc---c---CcEeehHHHHHHHhCCCCcCcccHHHHHHHhCcccCC
Q 043928 79 ESLKKFLADETICFVGIEMNGKVDGLGR----CNLR---C---KTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSL 148 (192)
Q Consensus 79 ~~L~~~l~~~~i~kvG~~~~~D~~~L~~----~g~~---~---~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~ 148 (192)
+.+.+++.+. +.|||++..|...|.+ +|+. . ...+|...+++..++.. ..+|..|++.+|.+..
T Consensus 87 ~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~---~~~L~~l~~~~gi~~~- 160 (194)
T 2gui_A 87 DEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK---RNSLDALCARYEIDNS- 160 (194)
T ss_dssp HHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS---CCSHHHHHHHTTCCCT-
T ss_pred HHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC---CCCHHHHHHHcCcCCC-
Confidence 2356677643 5789999999998875 6766 2 47899888887655322 4699999987776554
Q ss_pred CCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcccC
Q 043928 149 ASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 149 ~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~~ 191 (192)
. + .-+-|..||.++.+||.++.++..
T Consensus 161 -~--~--------------~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 161 -K--R--------------TLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp -T--C--------------SSCCHHHHHHHHHHHHHHHTC---
T ss_pred -C--C--------------CCCChHHHHHHHHHHHHHHHhccc
Confidence 1 0 123478999999999999987653
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.37 E-value=0.0017 Score=50.19 Aligned_cols=132 Identities=14% Similarity=0.070 Sum_probs=82.3
Q ss_pred CcEEEEeeeecCCCCCc-eeEEEeeeC--C-eEE---EEeccc-c--------C-------Ccc------HHHHHhhcCC
Q 043928 38 QRVVGIDVKFNHRCTKK-AEMLILCAG--N-RCL---IIQLCH-L--------G-------QIP------ESLKKFLADE 88 (192)
Q Consensus 38 ~~vvG~D~Ew~~~~~~~-~aliQl~~~--~-~~~---l~~l~~-~--------~-------~~p------~~L~~~l~~~ 88 (192)
..++.+|+|.+...... ..++|++.- + ..+ +++... + + .-| +.|.+|+.
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~-- 82 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLK-- 82 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHT--
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHC--
Confidence 47999999998653222 345677642 2 232 222211 0 0 001 34677776
Q ss_pred CeeEEEEeehhhHHHhhc-CCCccCcEeehHHHHH--HHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCcCCC
Q 043928 89 TICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAA--RVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSARAF 164 (192)
Q Consensus 89 ~i~kvG~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~--~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~~~L 164 (192)
+-+.|||++..|.+.|.. +. ...++|+..++. +..+.|.....||+.|++.+ |.+.. ..
T Consensus 83 ~~~lV~hn~~fD~~~L~~~~~--~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~--~~------------- 145 (189)
T 1wlj_A 83 GKLVVGHDLKHDFQALKEDMS--GYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQ--NS------------- 145 (189)
T ss_dssp TSEEEESSHHHHHHHTTCCCT--TCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCS--CC-------------
T ss_pred CCEEEECCcHHHHHHHHHhCC--CCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCC--CC-------------
Confidence 457899999999999987 43 235889876532 11133433578999999996 98876 21
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 165 SNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 165 s~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.+-+-|..||.++.++|.++.+.+
T Consensus 146 --~~~H~Al~Da~ata~l~~~l~~~~ 169 (189)
T 1wlj_A 146 --LLGHSSVEDARATMELYQISQRIR 169 (189)
T ss_dssp --TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcCcHHHHHHHHHHHHHHHHHH
Confidence 013568899999999999988654
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.30 E-value=0.0042 Score=49.14 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=60.6
Q ss_pred CCeeEEEEeehhhHHHhhc----CCCc-----cCcEeehHHHHHHHhCCCCcCcccHHHHHHHhCcccCCCCCCCcccCC
Q 043928 88 ETICFVGIEMNGKVDGLGR----CNLR-----CKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPS 158 (192)
Q Consensus 88 ~~i~kvG~~~~~D~~~L~~----~g~~-----~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~~K~k~~~~S~ 158 (192)
.+-+.|||++..|...|.+ +|+. ....+|+..+++..++ +.+|..|++.+|.++. .
T Consensus 125 ~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~-----~~~L~~l~~~~gi~~~--~-------- 189 (224)
T 2f96_A 125 KRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG-----QTVLAKACQAAGMEFD--N-------- 189 (224)
T ss_dssp SEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS-----CCSHHHHHHHTTCCCC--T--------
T ss_pred CCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC-----CCCHHHHHHHcCCCcC--C--------
Confidence 3567899999999998875 5765 2368999888886654 3589999987777654 1
Q ss_pred CCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 159 WSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 159 W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.+-+-|..||.++.+|+.++.+++
T Consensus 190 --------~~~H~Al~Da~~ta~l~~~l~~~~ 213 (224)
T 2f96_A 190 --------REAHSARYDTEKTAELFCGIVNRW 213 (224)
T ss_dssp --------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCChHHHHHHHHHHHHHHHHHH
Confidence 122447899999999999988765
No 16
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.10 E-value=0.011 Score=45.75 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=64.5
Q ss_pred HHHhhcCC-----CeeEEEEeehhhHH-Hhhc----CCCccC----cEeehHHHHHHHhCCCCcCcccHHHHHHHhCccc
Q 043928 81 LKKFLADE-----TICFVGIEMNGKVD-GLGR----CNLRCK----TAVELGHFAARVLKKPHISSFGLAKLAREVGIHN 146 (192)
Q Consensus 81 L~~~l~~~-----~i~kvG~~~~~D~~-~L~~----~g~~~~----~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l 146 (192)
+.+|+.+. ..+.|||+...|.. .|.+ +|+... ..+|+..+++..++.+ ....+|..|++.+|.+.
T Consensus 92 ~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~-~~~~~L~~l~~~~gi~~ 170 (204)
T 1w0h_A 92 VIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVP-RSQTKLTIMLEKLGMDY 170 (204)
T ss_dssp HHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCC-GGGCSHHHHHHHTTCCC
T ss_pred HHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCC-CccchHHHHHHHcCCCC
Confidence 45566543 34689999999996 7865 566532 6899999888766643 12578999998777654
Q ss_pred CCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 147 SLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 147 ~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
. . +-+-|..||.++.+|+.++.+++
T Consensus 171 ~--~-----------------~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 171 D--G-----------------RPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp C--S-----------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred C--C-----------------CccCcHHHHHHHHHHHHHHHHCC
Confidence 4 1 01337899999999999998765
No 17
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=96.96 E-value=0.0026 Score=51.25 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=63.1
Q ss_pred HHHHhhcC--CCeeEEEEe-ehhhHHHhhc----CCCcc--C--cEeehHHHHHHHhC--C----CCcCcccHHHHHHHh
Q 043928 80 SLKKFLAD--ETICFVGIE-MNGKVDGLGR----CNLRC--K--TAVELGHFAARVLK--K----PHISSFGLAKLAREV 142 (192)
Q Consensus 80 ~L~~~l~~--~~i~kvG~~-~~~D~~~L~~----~g~~~--~--~~~Dl~~~a~~~~~--~----~~~~~~gL~~l~~~~ 142 (192)
.|.+|+.+ +..+.|||+ +..|...|.+ +|+.. . .++|...+++.... . +...+.+|..+++++
T Consensus 107 ~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~ 186 (242)
T 3mxm_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (242)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHH
Confidence 45667765 236789999 5999999875 67653 2 57898887764321 1 223578999999997
Q ss_pred -CcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 043928 143 -GIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSS 189 (192)
Q Consensus 143 -g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~ 189 (192)
|.+.. . . +-|..||.++.+|+.++.++
T Consensus 187 ~gi~~~--~--~----------------H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 187 YWQAPT--D--S----------------HTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp HSSCCS--S--T----------------TSHHHHHHHHHHHHTSSHHH
T ss_pred hCCCCC--C--C----------------cChHHHHHHHHHHHHHHHHH
Confidence 98876 2 1 33789999999998876654
No 18
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=96.59 E-value=0.058 Score=44.61 Aligned_cols=91 Identities=11% Similarity=0.083 Sum_probs=65.5
Q ss_pred HHHHhhcCC-----CeeEEEEeehhhHH-Hhhc----CCCccC----cEeehHHHHHHHhCCCCcCcccHHHHHHHhCcc
Q 043928 80 SLKKFLADE-----TICFVGIEMNGKVD-GLGR----CNLRCK----TAVELGHFAARVLKKPHISSFGLAKLAREVGIH 145 (192)
Q Consensus 80 ~L~~~l~~~-----~i~kvG~~~~~D~~-~L~~----~g~~~~----~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~ 145 (192)
.+.+|+.+. ..+.|||+...|.. .|.. +|+... .++|+..++...++.+. ...+|..|++.+|.+
T Consensus 159 ~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-~~~~L~~l~~~~gi~ 237 (299)
T 1zbh_A 159 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-SQTKLTIMLEKLGMD 237 (299)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-GGCSHHHHHHHTTCC
T ss_pred HHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCC-CCccHHHHHHHcCCC
Confidence 355667653 25789999999998 7764 676532 68999888776655441 247999999877766
Q ss_pred cCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 146 NSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 146 l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.. . +-+-|..||.++.+|+.++.+++
T Consensus 238 ~~--g-----------------~~H~Al~DA~ata~l~~~l~~~~ 263 (299)
T 1zbh_A 238 YD--G-----------------RPNCGLDDSKNIARIAVRMLQDG 263 (299)
T ss_dssp CC--S-----------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CC--C-----------------CCCChHHHHHHHHHHHHHHHHhC
Confidence 54 1 11447899999999999998764
No 19
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=96.45 E-value=0.045 Score=48.50 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=83.3
Q ss_pred CCcEEEEeeeecCCCCCceeEEEeee---C-C-------eEEEEecccc---------------------CCc-c---HH
Q 043928 37 RQRVVGIDVKFNHRCTKKAEMLILCA---G-N-------RCLIIQLCHL---------------------GQI-P---ES 80 (192)
Q Consensus 37 ~~~vvG~D~Ew~~~~~~~~aliQl~~---~-~-------~~~l~~l~~~---------------------~~~-p---~~ 80 (192)
+..+|.||+|++......-.+|||+. . + ...+++.... +.. + +.
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~ 87 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHH
Confidence 45799999999976444456777773 1 2 1223332210 001 1 13
Q ss_pred HHHhhcCCCeeEEEEe-ehhhHHHhhc----CCCcc--------CcEeehHHHHHHHhC-----C--C----CcCcccHH
Q 043928 81 LKKFLADETICFVGIE-MNGKVDGLGR----CNLRC--------KTAVELGHFAARVLK-----K--P----HISSFGLA 136 (192)
Q Consensus 81 L~~~l~~~~i~kvG~~-~~~D~~~L~~----~g~~~--------~~~~Dl~~~a~~~~~-----~--~----~~~~~gL~ 136 (192)
+.+++..++-+.|||+ +..|...|.+ +|+.+ ...+|+-.+++..+. . | ...+.+|.
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHH
Confidence 5567775678899998 8999998875 55542 456787777764331 0 1 22367899
Q ss_pred HHHHHhCcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 043928 137 KLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSS 189 (192)
Q Consensus 137 ~l~~~~g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~ 189 (192)
.+++.+|.+.. . -+=|..||+++.+|+..+.++
T Consensus 168 ~L~~~~Gi~~~--~------------------aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 168 HLTKANGIEHS--N------------------AHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHHHTTCCCC-----------------------CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCC--C------------------CCCHHHHHHHHHHHHHHHHHh
Confidence 99887776544 1 123678999999999888654
No 20
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=96.29 E-value=0.01 Score=56.09 Aligned_cols=116 Identities=15% Similarity=0.075 Sum_probs=82.1
Q ss_pred cEEEEeeeecCCCCCceeEEEeeeCC-eEEEEeccccCCccHHHHHhhcCCCeeEEEEeehhhHHHhhcCCCccCcEeeh
Q 043928 39 RVVGIDVKFNHRCTKKAEMLILCAGN-RCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGRCNLRCKTAVEL 117 (192)
Q Consensus 39 ~vvG~D~Ew~~~~~~~~aliQl~~~~-~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~~~~D~~~L~~~g~~~~~~~Dl 117 (192)
..+++|+|........+| +++|..+ .++.+.+ + + +.|+.+|+|+++ +.+.|...|.++|+.+...+|+
T Consensus 305 ~~va~d~et~~~~~~~l~-vg~a~~~g~a~yvp~-~-~---~~Lk~lLed~~i-----n~K~d~~~L~~~Gi~~~~~~Dt 373 (832)
T 1bgx_T 305 AFVGFVLSRKEPMWADLL-ALAAARGGRVHRAPE-P-Y---KALRDLKEARGL-----LAKDLSVLALREGLGLPPGDDP 373 (832)
T ss_dssp CCBEEECSSSCTTTCCCC-EEECBSSSEEECCSC-H-H---HHHHHCSSBCBT-----THHHHHHHHHHHTCCCCBCCCH
T ss_pred ceEEEEEecCCcccCcee-EEEEEcCCCEEEEEC-C-H---HHHHHHHhCCCC-----ChHHHHHHHHHcCCccCcccCH
Confidence 468999986641122333 6788744 5555544 2 1 579999999997 8899999998889888866886
Q ss_pred HHHHHHHhCCCCcCcccHHHHHHHhCcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcccC
Q 043928 118 GHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSLD 191 (192)
Q Consensus 118 ~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~~ 191 (192)
. ++...+. |. ..||..|++++| | +|. ++ || .||.+.++++..|..+|.
T Consensus 374 ~-laayLl~-p~--~~~l~~l~~~~g------k-------~~~------~~--ya-~da~~~~~l~~~l~~~L~ 421 (832)
T 1bgx_T 374 M-LLAYLLD-PS--NTTPEGVARRYG------G-------EWT------EE--AG-ERAALSERLFANLWGRLE 421 (832)
T ss_dssp H-HHHHHHC-TT--CCSTTHHHHHHS------C-------CCC------SS--HH-HHHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHcC-CC--CCCHHHHHHHhC------C-------Cch------HH--HH-HHHHHHHHHHHHHHHHHh
Confidence 5 4444554 43 679999999883 2 131 12 88 699999999999988774
No 21
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=95.81 E-value=0.072 Score=44.66 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=62.1
Q ss_pred HHHHhhcC--CCeeEEEEe-ehhhHHHhhc----CCCcc--C--cEeehHHHHHHHh--CCCC----cCcccHHHHHHHh
Q 043928 80 SLKKFLAD--ETICFVGIE-MNGKVDGLGR----CNLRC--K--TAVELGHFAARVL--KKPH----ISSFGLAKLAREV 142 (192)
Q Consensus 80 ~L~~~l~~--~~i~kvG~~-~~~D~~~L~~----~g~~~--~--~~~Dl~~~a~~~~--~~~~----~~~~gL~~l~~~~ 142 (192)
.|.+|+.+ +..+.|||+ +..|...|.+ +|+.. . .++|.-.+++... ..|. ..+.+|.++++.+
T Consensus 107 ~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l 186 (314)
T 3u3y_B 107 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRL 186 (314)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHh
Confidence 45677775 337899999 8999999975 67654 2 3788766554211 1121 2467999999996
Q ss_pred -CcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 043928 143 -GIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSS 189 (192)
Q Consensus 143 -g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~ 189 (192)
|.+.. .. +=|..||.++.+|+.++.++
T Consensus 187 ~gi~~~--~a------------------HrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 187 YWQAPT--DS------------------HTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp HSSCCS--CS------------------SSHHHHHHHHHHHHHSSHHH
T ss_pred cCCCCC--CC------------------CCHHHHHHHHHHHHHHHHHH
Confidence 98766 21 22679999999999877654
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=94.99 E-value=0.4 Score=44.79 Aligned_cols=142 Identities=12% Similarity=0.229 Sum_probs=84.3
Q ss_pred cEEEEeeeecCC-----CCCceeEEEee--eCCeEEEEecccc--------CC---ccHHHHHhh--cCCCeeEEEEeeh
Q 043928 39 RVVGIDVKFNHR-----CTKKAEMLILC--AGNRCLIIQLCHL--------GQ---IPESLKKFL--ADETICFVGIEMN 98 (192)
Q Consensus 39 ~vvG~D~Ew~~~-----~~~~~aliQl~--~~~~~~l~~l~~~--------~~---~p~~L~~~l--~~~~i~kvG~~~~ 98 (192)
+++.||+|.... ..++ ++|++ ..+..-++..... .. +-..+.+++ .||+ +.+||++.
T Consensus 136 ~ilsfDIEt~~~~~p~~~~d~--Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPD-iivGyN~~ 212 (775)
T 1qht_A 136 TMLAFAIATLYHEGEEFGTGP--ILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPD-VLITYNGD 212 (775)
T ss_dssp CEEEEEEEECCCTTCCTTCSC--EEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCS-EEEESSTT
T ss_pred EEEEEEEEEcCCCCCCCCCCc--EEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCC-EEEEeCCC
Confidence 799999998753 2334 45555 3333333321111 11 112334444 4676 47999884
Q ss_pred -hhHHHhhc----CCCcc------------------------CcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccCC
Q 043928 99 -GKVDGLGR----CNLRC------------------------KTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNSL 148 (192)
Q Consensus 99 -~D~~~L~~----~g~~~------------------------~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~ 148 (192)
.|+..|.+ +|+.. .-.+|+-.+++..+..+ +.+|.++++.+ |..-.-
T Consensus 213 ~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~~~l~---sysL~~Va~~~Lg~~K~d 289 (775)
T 1qht_A 213 NFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLP---TYTLEAVYEAVFGKPKEK 289 (775)
T ss_dssp TTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHHSCCS---CCCHHHHHHHHHCCCCCC
T ss_pred CccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHhcCcC---cCCHHHHHHHHhCCCCCc
Confidence 59988764 56542 23679888887654433 68999999988 874220
Q ss_pred CCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHh
Q 043928 149 ASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVL 187 (192)
Q Consensus 149 ~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~ 187 (192)
-+.+.-..-|...+--..-+.|...||...+.|+.++.
T Consensus 290 -v~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 290 -VYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp -CCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00111112344433225668999999999999987764
No 23
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=94.81 E-value=0.076 Score=41.98 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=63.6
Q ss_pred HHHHhhcCC--CeeEEEEee-hhhHHHhhc----CCCcc---CcEeehHHHHHHHhC--C-----CCcCcccHHHHHHHh
Q 043928 80 SLKKFLADE--TICFVGIEM-NGKVDGLGR----CNLRC---KTAVELGHFAARVLK--K-----PHISSFGLAKLAREV 142 (192)
Q Consensus 80 ~L~~~l~~~--~i~kvG~~~-~~D~~~L~~----~g~~~---~~~~Dl~~~a~~~~~--~-----~~~~~~gL~~l~~~~ 142 (192)
.|.+|+..- ..+.|||+. ..|...|.+ +|+.. ...+|...+++..+. . |...+.+|..+++++
T Consensus 102 ~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~ 181 (238)
T 1y97_A 102 TLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRY 181 (238)
T ss_dssp HHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHH
Confidence 467788752 267899998 999998875 56654 357998777776541 0 333478999999975
Q ss_pred -CcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 143 -GIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 143 -g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
|.+.. . -+-|..||.++.+++.++.+++
T Consensus 182 ~gi~~~--~------------------~H~Al~Da~~ta~l~~~l~~~~ 210 (238)
T 1y97_A 182 FRAEPS--A------------------AHSAEGDVHTLLLIFLHRAAEL 210 (238)
T ss_dssp HSSCCC-----------------------CHHHHHHHHHHHHHHTHHHH
T ss_pred hCCCCc--c------------------CccHHHHHHHHHHHHHHHHHHH
Confidence 87644 1 3678999999999999887653
No 24
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=94.11 E-value=0.22 Score=41.13 Aligned_cols=80 Identities=10% Similarity=0.000 Sum_probs=58.6
Q ss_pred cCCCeeEEEEeehhhHHHhhc--CCC--c-------------cCcEeehHHHHHHHhCCCCcCcccHHHHHHHhCc-ccC
Q 043928 86 ADETICFVGIEMNGKVDGLGR--CNL--R-------------CKTAVELGHFAARVLKKPHISSFGLAKLAREVGI-HNS 147 (192)
Q Consensus 86 ~~~~i~kvG~~~~~D~~~L~~--~g~--~-------------~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~-~l~ 147 (192)
-++++..|.+....|+-.|.+ +|- . ..++.|+..+++.. + . ...||+++|+.+|+ ++.
T Consensus 147 l~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~-~-~--l~ggL~~lA~~L~v~r~g 222 (285)
T 4gmj_B 147 LCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSC-K-N--LKGGLQEVAEQLELERIG 222 (285)
T ss_dssp SCTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGS-T-T--CCSCHHHHHHHTTCCCCS
T ss_pred hcCCCceEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhc-c-c--cCChHHHHHHhCCCCCCC
Confidence 478899999999999988877 432 1 13689998887642 2 1 25689999998854 344
Q ss_pred CCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 043928 148 LASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSS 189 (192)
Q Consensus 148 ~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~ 189 (192)
+ -+=|.-||+....+|.+|.+.
T Consensus 223 --~------------------~HqAGsDSllT~~~F~kl~~~ 244 (285)
T 4gmj_B 223 --P------------------QHQAGSDSLLTGMAFFKMREM 244 (285)
T ss_dssp --C------------------TTSHHHHHHHHHHHHHHHHHH
T ss_pred --C------------------CCcchhHHHHHHHHHHHHHHH
Confidence 1 133899999999999999864
No 25
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=93.88 E-value=0.84 Score=35.70 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=55.8
Q ss_pred HHHhhcCC-------CeeEEEEeehhhHHH-hhc----CCCcc----CcEeehHHHHHHHhC-CCCcCcccHHHHHHHhC
Q 043928 81 LKKFLADE-------TICFVGIEMNGKVDG-LGR----CNLRC----KTAVELGHFAARVLK-KPHISSFGLAKLAREVG 143 (192)
Q Consensus 81 L~~~l~~~-------~i~kvG~~~~~D~~~-L~~----~g~~~----~~~~Dl~~~a~~~~~-~~~~~~~gL~~l~~~~g 143 (192)
+.+++.+. ..++++.| ..|++. |.+ +|+.. ...+|++.......+ .| ..+|..|++.+|
T Consensus 111 f~~~l~~~~lv~hn~~~~~~t~g-~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p---~~~L~~l~~~~g 186 (224)
T 2xri_A 111 VDEWMAKEGLLDPNVKSIFVTCG-DWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP---KNGLLDMNKGLS 186 (224)
T ss_dssp HHHHHHHTTTTSTTSCEEEEESS-SHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC---TTTHHHHHHHTT
T ss_pred HHHHHhhcccccCCCceEEEEeC-hhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC---CCCHHHHHHHcC
Confidence 45566543 23334443 889985 632 56654 368998765543333 23 478999998667
Q ss_pred cccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 144 IHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 144 ~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.+.. . +-+-|..||..+.+|+.+|.++.
T Consensus 187 i~~~--~-----------------~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 187 LQHI--G-----------------RPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp CCCC--S-----------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC--C-----------------CCcChHHHHHHHHHHHHHHHHcC
Confidence 6543 1 12347899999999999998653
No 26
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=93.15 E-value=0.3 Score=41.34 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=65.6
Q ss_pred HHHHhhcCC-----CeeEEEEeehhhHH-Hhhc----CCCccC----cEeehHHHHHHHhCCCCcCcccHHHHHHHhCcc
Q 043928 80 SLKKFLADE-----TICFVGIEMNGKVD-GLGR----CNLRCK----TAVELGHFAARVLKKPHISSFGLAKLAREVGIH 145 (192)
Q Consensus 80 ~L~~~l~~~-----~i~kvG~~~~~D~~-~L~~----~g~~~~----~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~ 145 (192)
.|.+|+.+. ..+.|||+...|+. .|.. +|+... .++|+..++...++.+. ...+|..|++.+|.+
T Consensus 209 ~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~-~~~~L~~l~~~~gi~ 287 (349)
T 1zbu_A 209 KVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR-SQTKLTIMLEKLGMD 287 (349)
T ss_dssp HHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCG-GGGSHHHHHHHTTCC
T ss_pred HHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCC-CCCCHHHHHHHcCCC
Confidence 345567653 25789999999998 7764 676532 68999888776655441 247999999877766
Q ss_pred cCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 146 NSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 146 l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.. . +-+-|..||.++.+|+.++.+++
T Consensus 288 ~~--g-----------------~~HrAl~DA~ata~ll~~ll~~~ 313 (349)
T 1zbu_A 288 YD--G-----------------RPHCGLDDSKNIARIAVRMLQDG 313 (349)
T ss_dssp CC--S-----------------CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CC--C-----------------CCCCHHHHHHHHHHHHHHHHHhc
Confidence 54 1 11447899999999999998764
No 27
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=90.67 E-value=1.5 Score=32.78 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=48.3
Q ss_pred HHHHhhcCC----CeeEEEEeehhhHHHhhc-CC---Cc-cCcEeehHHHHHHHhCCCCcCcccHHHHHHHhCcccCCCC
Q 043928 80 SLKKFLADE----TICFVGIEMNGKVDGLGR-CN---LR-CKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLAS 150 (192)
Q Consensus 80 ~L~~~l~~~----~i~kvG~~~~~D~~~L~~-~g---~~-~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~~K 150 (192)
.+.+|+.+- +.+.|||++..|...|.+ +. .. ....+|+. +|..+++.+...+. +
T Consensus 87 ~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~---------------tl~~l~~~~~p~~~--~ 149 (180)
T 2igi_A 87 ATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVS---------------TLKELARRWKPEIL--D 149 (180)
T ss_dssp HHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETH---------------HHHHHHHHHCGGGG--G
T ss_pred HHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHH---------------HHHHHHHHhChHhh--h
Confidence 455666641 357899999999999987 42 00 01233422 33344444311111 0
Q ss_pred CCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 151 GFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 151 ~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.+..++-+-|..||.++.+++..+.+.+
T Consensus 150 ------------~i~~~~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 150 ------------GFTKQGTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp ------------GSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ------------CCCCcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 1112234668999999999999988765
No 28
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=89.62 E-value=5.1 Score=33.68 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=58.6
Q ss_pred hhcCCCeeEEEEeehhhHHHhhc--CCCc---------------cCcEeehHHHHHHHhCCCCcCcccHHHHHHHhCc-c
Q 043928 84 FLADETICFVGIEMNGKVDGLGR--CNLR---------------CKTAVELGHFAARVLKKPHISSFGLAKLAREVGI-H 145 (192)
Q Consensus 84 ~l~~~~i~kvG~~~~~D~~~L~~--~g~~---------------~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~-~ 145 (192)
+.-+++|..|.+....|+-.|.+ .+-. ..++.|+..+++...+ -..||+.+++.+|. +
T Consensus 156 Lvl~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~----l~ggL~~lA~~L~v~R 231 (333)
T 2p51_A 156 LVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLN----NSKGLQDIADDLQIHR 231 (333)
T ss_dssp SSSCTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTC----CCCCHHHHHHHTTCCC
T ss_pred cccCCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcc----ccCCHHHHHHHcCCCc
Confidence 34566789999999999887776 3311 1368999888864222 25799999998853 2
Q ss_pred cCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 043928 146 NSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSS 189 (192)
Q Consensus 146 l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~ 189 (192)
.. ..+-|+-||+....+|.+|.+.
T Consensus 232 ig--------------------~~HqAGsDSlLT~~~F~kl~~~ 255 (333)
T 2p51_A 232 IG--------------------PQHQAGSDALLTARIFFEIRSR 255 (333)
T ss_dssp CS--------------------CTTSHHHHHHHHHHHHHHHHHH
T ss_pred cC--------------------cchhhhhHHHHHHHHHHHHHHH
Confidence 22 1145899999999999999864
No 29
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=87.40 E-value=6.9 Score=37.26 Aligned_cols=101 Identities=12% Similarity=0.211 Sum_probs=62.0
Q ss_pred HHHHhh--cCCCeeEEEEeeh-hhHHHhhc----CCCcc------------------------------------CcEee
Q 043928 80 SLKKFL--ADETICFVGIEMN-GKVDGLGR----CNLRC------------------------------------KTAVE 116 (192)
Q Consensus 80 ~L~~~l--~~~~i~kvG~~~~-~D~~~L~~----~g~~~------------------------------------~~~~D 116 (192)
.+.+++ .||+| .+||++. .|+..|.+ +|+.. +-.+|
T Consensus 319 ~F~~~i~~~DPDI-IvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~lD 397 (919)
T 3iay_A 319 NWRNFIIKVDPDV-IIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLD 397 (919)
T ss_dssp HHHHHHHHHCCSE-EEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEE
T ss_pred HHHHHHHHhCCCE-EEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEEEE
Confidence 344444 57887 6799995 59988853 45431 02578
Q ss_pred hHHHHHHHhCCCCcCcccHHHHHHHh-CcccCCCCCCCcccCCCCcC-C-CCHHHHHHHHHhHHHHHHHHHHH
Q 043928 117 LGHFAARVLKKPHISSFGLAKLAREV-GIHNSLASGFNGYAPSWSAR-A-FSNEQIKFAVHEAFAYYVIGDRV 186 (192)
Q Consensus 117 l~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~~~K~k~~~~S~W~~~-~-Ls~~Qi~YAa~Da~~~~~i~~~L 186 (192)
+-.+++..+. ..+.+|.++|+.+ |.+-.-.-.+ ..++|... + -...=+.|...||+..++|+.++
T Consensus 398 l~~~~k~~~~---l~sysL~~Va~~~Lg~~K~dv~~~--~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 398 LLQFIQREYK---LRSYTLNAVSAHFLGEQKEDVHYS--IISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp HHHHHHHHCC---CSCCCHHHHHHHHHCCC------C--CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhcC---CCCCCHHHHHHHhcccCCCCCCHH--HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765433 3478999999999 8642200011 22333321 1 11234789999999999999886
No 30
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=84.09 E-value=30 Score=32.93 Aligned_cols=173 Identities=9% Similarity=0.123 Sum_probs=106.1
Q ss_pred EcCcEEEEEEeCChHHHHHHHHHHHHh------------------hc--------CCcEEEEeeeecCC--------CCC
Q 043928 8 IQGNNMKVTVVDHAALIDDNVAALKAL------------------LK--------RQRVVGIDVKFNHR--------CTK 53 (192)
Q Consensus 8 ~~g~~i~v~vt~~~~~~~~~i~~~~~~------------------~~--------~~~vvG~D~Ew~~~--------~~~ 53 (192)
+.|+.+.-.--.+..++++|+++.... ++ +-+++.||+|-... ...
T Consensus 52 ~~g~~~~~~~f~~~~~~~~~~k~~~~~~~~~~g~~~~~~qy~~~~~~~~i~~~~~~ir~~~~DIEv~~~~~fPd~~~~~~ 131 (903)
T 3qex_A 52 IYGKPCTRKLFANMRDASQWIKRMEDIGLEALGMDDFKLAYLSDTYNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKH 131 (903)
T ss_dssp TTSCEEEEEECSSHHHHHHHHHHHHHHTCCCBSCCSHHHHHHHHHCCSCCCCCGGGSCEEEEEEECCCTTSSCCTTTCCS
T ss_pred ccCCcccccCCCCHHHHHHHHHHhhccCcccccCcHHHHHHHHHHcccccccCcccccEEEEeEEeCCCCCCCCcccCCC
Confidence 556666656667778888888887544 11 13799999996432 356
Q ss_pred ceeEEEeeeCC--eEEEEeccc-------------------c----------CC-----------ccHHHHHhhc--CCC
Q 043928 54 KAEMLILCAGN--RCLIIQLCH-------------------L----------GQ-----------IPESLKKFLA--DET 89 (192)
Q Consensus 54 ~~aliQl~~~~--~~~l~~l~~-------------------~----------~~-----------~p~~L~~~l~--~~~ 89 (192)
++-.|+++... +.+++.+.+ - +. +-..+.+++. ||+
T Consensus 132 ~Ii~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPD 211 (903)
T 3qex_A 132 PIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPV 211 (903)
T ss_dssp CCCEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTTEEEEEESSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCC
Confidence 78888888755 666653322 0 00 1123344443 788
Q ss_pred eeEEEEeeh-hhHHHhhc-----CCCc---------------------------c--CcEeehHHHHHHHhCCCCcCccc
Q 043928 90 ICFVGIEMN-GKVDGLGR-----CNLR---------------------------C--KTAVELGHFAARVLKKPHISSFG 134 (192)
Q Consensus 90 i~kvG~~~~-~D~~~L~~-----~g~~---------------------------~--~~~~Dl~~~a~~~~~~~~~~~~g 134 (192)
|+ +|+++. .|+..|.+ +|+. + +-.+|+=.+++. .......+.+
T Consensus 212 II-tGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~G~~~~~~i~GRv~lDl~~~~k~-~~~~~l~SYs 289 (903)
T 3qex_A 212 IL-TGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKK-FSFTNQPSYS 289 (903)
T ss_dssp EE-ECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETTEEEEEEEETTCEECCHHHHHHH-HSCCCCSCCC
T ss_pred EE-EecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhhcCCceeEEEeCeEEeeHHHHHHH-hCccCcCCCC
Confidence 75 499885 48776643 2431 1 125777666653 2222234789
Q ss_pred HHHHHHHh-CcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHH
Q 043928 135 LAKLAREV-GIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRV 186 (192)
Q Consensus 135 L~~l~~~~-g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L 186 (192)
|.++|+.+ |..-.- -+ ...+.|.... ...=+.|.-.||...++|+.++
T Consensus 290 Ld~VA~~lLg~~K~d-~~--~~I~~~~~~d-~~~L~~Ycl~Da~Lt~~L~~Kl 338 (903)
T 3qex_A 290 LDYISEFELNVGKLK-YD--GPISKLRESN-HQRYISYNIIAVYRVLQIDAKR 338 (903)
T ss_dssp HHHHHHHHHCCCCCC-CS--SCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccc-cH--HHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 875330 12 2334554311 1344899999999999999873
No 31
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=83.49 E-value=1 Score=37.20 Aligned_cols=90 Identities=10% Similarity=0.111 Sum_probs=57.7
Q ss_pred HHHhhcCC-----CeeEEEEeehhhH-HHhhc----CCCccC----cEeehHHHHHHHhCCCC----cCcccHHHHHHHh
Q 043928 81 LKKFLADE-----TICFVGIEMNGKV-DGLGR----CNLRCK----TAVELGHFAARVLKKPH----ISSFGLAKLAREV 142 (192)
Q Consensus 81 L~~~l~~~-----~i~kvG~~~~~D~-~~L~~----~g~~~~----~~~Dl~~~a~~~~~~~~----~~~~gL~~l~~~~ 142 (192)
+.+++.+. +++++++| ..|+ ..|.+ +|+... ..+|+..+++..++... ....+|..|++.+
T Consensus 102 f~~~l~~~~lvahn~~lv~~g-~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~ 180 (308)
T 3cg7_A 102 FQQWLITLGLEEGKFAFVCDS-RQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYY 180 (308)
T ss_dssp HHHHHHHHCCCTTSEEEEESS-SHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHT
T ss_pred HHHHHHhCCcCCcceEEeccC-cccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhccccccccccCcCHHHHHHHc
Confidence 44556542 33444443 7898 46643 676643 58999988876543211 1146899999776
Q ss_pred CcccCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 143 GIHNSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 143 g~~l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
|.+.. . . -+-|..||.++.+|+.+|.++.
T Consensus 181 gi~~~--~--~---------------~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 181 DLPTI--G--R---------------AHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp TCCCC--S--C---------------TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCC--C--C---------------CcCHHHHHHHHHHHHHHHHHcC
Confidence 77655 1 1 1347789999999999988653
No 32
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=82.92 E-value=0.68 Score=44.71 Aligned_cols=93 Identities=9% Similarity=0.062 Sum_probs=58.0
Q ss_pred eeEEEEeehhhHHHhhc-CCCccC--cEeehHHHHHHHhC-----------------------------------C----
Q 043928 90 ICFVGIEMNGKVDGLGR-CNLRCK--TAVELGHFAARVLK-----------------------------------K---- 127 (192)
Q Consensus 90 i~kvG~~~~~D~~~L~~-~g~~~~--~~~Dl~~~a~~~~~-----------------------------------~---- 127 (192)
=+.|||+++.|-.++.+ |.++-. .++|.-.+.....| .
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 35799999999999988 887643 45665443211111 0
Q ss_pred --CCcC---cc--cHHHHHHHh-Cc-ccCCCCCCCcccCCCCcCCCC------HHHHHHHHHhHHHHHHHHHHHh
Q 043928 128 --PHIS---SF--GLAKLAREV-GI-HNSLASGFNGYAPSWSARAFS------NEQIKFAVHEAFAYYVIGDRVL 187 (192)
Q Consensus 128 --~~~~---~~--gL~~l~~~~-g~-~l~~~K~k~~~~S~W~~~~Ls------~~Qi~YAa~Da~~~~~i~~~L~ 187 (192)
+|.. .- ||+++++-+ |. .++ |..+ .......+. ++=+.|.|.|+.+.++||.++.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~lhcg~~~ld--K~~R---d~Fv~~~~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~ 344 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHRLYVGGPPLE--KEPR---ELFVKGTMKDIRENFQDLMQYCAQDVWATHEVFQQQL 344 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHTCSSCSCS----SCSS---SSTTTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHHHhCCCcccC--hhhH---hhhhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1222 23 677777777 76 788 5443 333333332 2347899999999999999885
No 33
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=82.39 E-value=9.7 Score=34.18 Aligned_cols=133 Identities=5% Similarity=-0.061 Sum_probs=76.5
Q ss_pred cEEEEeeeecCC-CCCceeEEEeeeCCeEEEEeccccCCccHHHHHhhcCCCeeEEEEeehhhHHHhhc----CCCc---
Q 043928 39 RVVGIDVKFNHR-CTKKAEMLILCAGNRCLIIQLCHLGQIPESLKKFLADETICFVGIEMNGKVDGLGR----CNLR--- 110 (192)
Q Consensus 39 ~vvG~D~Ew~~~-~~~~~aliQl~~~~~~~l~~l~~~~~~p~~L~~~l~~~~i~kvG~~~~~D~~~L~~----~g~~--- 110 (192)
+++.||+|..+. ..+++-.+-+.+++.+-.+-.. +.+-+.+.. +.+.+...++|++..|...|.+ .|.+
T Consensus 7 ~i~~~D~Et~~d~~~~~~~~i~~~~~~~~~~~~~~--~~l~~fi~~-~~~~~~~i~~hNl~FD~~~l~~~~~~~~~~~~~ 83 (575)
T 2py5_A 7 KMYSCAFETTTKVEDCRVWAYGYMNIEDHSEYKIG--NSLDEFMAW-VLKVQADLYFHNLKFAGAFIINWLERNGFKWSA 83 (575)
T ss_dssp CEEEEEEEECCBTTBCCEEEEEEEESSCTTCEEEE--SCHHHHHHH-HHHHCCEEEETTHHHHHHHHHHHHHHTTCEECT
T ss_pred eEEEEEEEeecCCCCCceEEEEEEeCCceEEEEec--hhHHHHHHH-HHHcCCEEEEEChhhhHHHHHHHHHHhCccccc
Confidence 699999998655 3445555555555422111100 113223333 3334555777999999988875 5421
Q ss_pred ----------c-Cc------------------EeehHHHHHHHhCCCCcCcccHHHHHHHhCcccCCCCC----CCcccC
Q 043928 111 ----------C-KT------------------AVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASG----FNGYAP 157 (192)
Q Consensus 111 ----------~-~~------------------~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~~K~----k~~~~S 157 (192)
+ ++ .+++.+..+. ...||+.+++.+|.... |. ..++.-
T Consensus 84 ~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~-------~~~SL~~~a~~f~~~~~--K~~~py~~~~~~ 154 (575)
T 2py5_A 84 DGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKK-------LPFPVKKIAKDFKLTVL--KGDIDYHKERPV 154 (575)
T ss_dssp TCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHH-------SCSCHHHHHHHTTCCCC--SSCCCTTSCCCT
T ss_pred ccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhh-------hhhhHHHHHHHhCCccc--CCccCccccCcc
Confidence 1 11 1233332221 14699999998843322 21 112222
Q ss_pred CCCcCCCCHHHHHHHHHhHHHHHHHHHHH
Q 043928 158 SWSARAFSNEQIKFAVHEAFAYYVIGDRV 186 (192)
Q Consensus 158 ~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L 186 (192)
+| .+.++-+.|+..|+..+.+++.+.
T Consensus 155 ~~---~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 155 GY---KITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp TC---CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34 488999999999999999998764
No 34
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=79.53 E-value=3.2 Score=35.99 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=62.9
Q ss_pred hhcCCCeeEEEEeehhhHHHhhc--CCCcc--------------CcEeehHHHHHHHhC-CCCcCcccHHHHHHHh-Ccc
Q 043928 84 FLADETICFVGIEMNGKVDGLGR--CNLRC--------------KTAVELGHFAARVLK-KPHISSFGLAKLAREV-GIH 145 (192)
Q Consensus 84 ~l~~~~i~kvG~~~~~D~~~L~~--~g~~~--------------~~~~Dl~~~a~~~~~-~~~~~~~gL~~l~~~~-g~~ 145 (192)
.|...+-..|||++--|+-.+.+ +|--| ..++|...++.. .. .......+|..+.+.+ ...
T Consensus 276 ~L~~s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~-~~~~~~~~~~sL~~l~~~l~~~~ 354 (430)
T 2a1r_A 276 AIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAST-QPFKDIINNTSLAELEKRLKETP 354 (430)
T ss_dssp HHHHHCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSSEEEHHHHHTS-TTTTTTCSCCSHHHHHHHTTSTT
T ss_pred HHHhCCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCceeehHHhhhc-cchhhccCCCCHHHHHHHHHhCC
Confidence 33333445699999999998887 66332 358998887742 11 1112357899999888 543
Q ss_pred cCCCCCCCcccCC-CCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 146 NSLASGFNGYAPS-WSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 146 l~~~K~k~~~~S~-W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
.. +..+...+ -..-.-+.++.+=|+.|||..-.+|-+|...|
T Consensus 355 ~~---~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 355 FN---PPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp CC---CCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CC---CCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 32 12333211 11111134677889999999999999887654
No 35
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=75.35 E-value=54 Score=30.73 Aligned_cols=136 Identities=10% Similarity=0.146 Sum_probs=79.9
Q ss_pred CcEEEEeeee-cCC---CCC----ceeEEEeeeC--C---eEEEEecccc--------C----------CccHHHHHhhc
Q 043928 38 QRVVGIDVKF-NHR---CTK----KAEMLILCAG--N---RCLIIQLCHL--------G----------QIPESLKKFLA 86 (192)
Q Consensus 38 ~~vvG~D~Ew-~~~---~~~----~~aliQl~~~--~---~~~l~~l~~~--------~----------~~p~~L~~~l~ 86 (192)
-+++.||+|. .+. .++ .--+||++.- + .++++..+.. + .+-..+.+++.
T Consensus 190 l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~~~~g~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~~LL~~f~~~i~ 269 (847)
T 1s5j_A 190 IKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDILL 269 (847)
T ss_dssp CCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEEccCCCcEEEEEeCCcccccccCCCCCeEEEeCCHHHHHHHHHHHhc
Confidence 4799999999 432 111 1346676543 2 3555543211 1 12235567778
Q ss_pred CCCeeEEEEeeh-hhHHHhhc----CCCcc-----------------CcEeehHHHHHHH------hCCCCcCcccHHHH
Q 043928 87 DETICFVGIEMN-GKVDGLGR----CNLRC-----------------KTAVELGHFAARV------LKKPHISSFGLAKL 138 (192)
Q Consensus 87 ~~~i~kvG~~~~-~D~~~L~~----~g~~~-----------------~~~~Dl~~~a~~~------~~~~~~~~~gL~~l 138 (192)
++. +.+||++. .|+-.|.+ +|+.. .-.+|+-...... ++. ...+.+|.++
T Consensus 270 ~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~-kl~sysL~~V 347 (847)
T 1s5j_A 270 EYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG-KYNEYNLDAV 347 (847)
T ss_dssp TCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT-CCSSCSHHHH
T ss_pred cCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc-ccccccHHHH
Confidence 777 68999885 59998864 67631 1246665543210 111 1237799999
Q ss_pred HHHh-CcccCCCCCCCcccCCCCcCCCC-HHHHHHHHHhHHHHHHHH
Q 043928 139 AREV-GIHNSLASGFNGYAPSWSARAFS-NEQIKFAVHEAFAYYVIG 183 (192)
Q Consensus 139 ~~~~-g~~l~~~K~k~~~~S~W~~~~Ls-~~Qi~YAa~Da~~~~~i~ 183 (192)
|+.+ |..-. .+ .+.|.. +. .+=+.|.-.||...+.|+
T Consensus 348 a~~~Lg~~K~-----dv-~~~i~~--~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 348 AKALLGTSKV-----KV-DTLISF--LDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHHHHCCCCC--------SSCTTT--CCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCc-----ch-hHhhhh--ccHHHHHHHHHHHHHHHHHHH
Confidence 9998 87422 11 133432 23 344899999999999985
No 36
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.05 E-value=1.7 Score=38.58 Aligned_cols=103 Identities=17% Similarity=0.025 Sum_probs=65.8
Q ss_pred HHHhhcCCCeeEEEEeehhhHHHhhc--CCCcc--------------CcEeehHHHHHHHhCC-CCcCcccHHHHHHHh-
Q 043928 81 LKKFLADETICFVGIEMNGKVDGLGR--CNLRC--------------KTAVELGHFAARVLKK-PHISSFGLAKLAREV- 142 (192)
Q Consensus 81 L~~~l~~~~i~kvG~~~~~D~~~L~~--~g~~~--------------~~~~Dl~~~a~~~~~~-~~~~~~gL~~l~~~~- 142 (192)
+.+.|...+...|||++-.|+-.|.+ +|--| ..++|+..++.. .+. ......||..|.+.+
T Consensus 268 v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~i~DTK~la~~-~~~~~~~~~~~L~~l~~~l~ 346 (507)
T 3d45_A 268 VIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAST-QPFKDIINNTSLAELEKRLK 346 (507)
T ss_dssp HHHHHHHHCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSCEEEHHHHTTS-TTHHHHCCCCCHHHHHHHTT
T ss_pred HHHHHHhCCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCceeEhHhhhhc-CccccccCCCCHHHHHHHHh
Confidence 34555566788999999999999988 55332 258898877642 110 011257899999988
Q ss_pred CcccCCCCCCCccc----CCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 143 GIHNSLASGFNGYA----PSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 143 g~~l~~~K~k~~~~----S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
..... ..++.. +.+. -+..+.+=|+.|||..-.+|-+|...+
T Consensus 347 ~~~~~---~p~i~~~~~~~~y~---~~~~~~HeAGyDA~mTg~~F~kl~~~l 392 (507)
T 3d45_A 347 ETPFD---PPKVESAEGFPSYD---TASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp STTCC---CCCEEECTTSCCCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCC---CCeEEecccccccc---cCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 54322 123322 1221 234556889999999999999987644
No 37
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=71.01 E-value=30 Score=32.28 Aligned_cols=167 Identities=13% Similarity=0.093 Sum_probs=100.2
Q ss_pred EcCcEEEEEEeCChHHHHHHHHHHHHh----h-------------------------------------------cCCcE
Q 043928 8 IQGNNMKVTVVDHAALIDDNVAALKAL----L-------------------------------------------KRQRV 40 (192)
Q Consensus 8 ~~g~~i~v~vt~~~~~~~~~i~~~~~~----~-------------------------------------------~~~~v 40 (192)
|.|+.+.-.+++++..+.++-+.+... + ..-++
T Consensus 76 ~~~~~~~~i~~~~~~~~~~~r~~l~~~g~~v~EadI~~~~RfliD~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~p~lri 155 (786)
T 3k59_A 76 FHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKW 155 (786)
T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHTTCCCBSTTCCHHHHHHHHTTCSSEEEEEEEEETTEEEEEEEEECSSCCCCCCE
T ss_pred ecCceEEEEEECCHHHHHHHHHHHHHcCCceeeccCChhheeeEecCcccceEEEEeccCCceecceEeeCCCCCCCCeE
Confidence 568888888899999998887766431 0 01268
Q ss_pred EEEeeeecCCCCCceeEEEeeeCC----eEEEEeccccC------------CccHHHHHhh-----cCCCeeEEEEeehh
Q 043928 41 VGIDVKFNHRCTKKAEMLILCAGN----RCLIIQLCHLG------------QIPESLKKFL-----ADETICFVGIEMNG 99 (192)
Q Consensus 41 vG~D~Ew~~~~~~~~aliQl~~~~----~~~l~~l~~~~------------~~p~~L~~~l-----~~~~i~kvG~~~~~ 99 (192)
++||+|-.. .. .++|++..+ .++++..+..+ +-..-|..|+ .||+| .+||++.+
T Consensus 156 lsfDIE~~~--~g--~i~~I~~~~~~~~~v~~l~~~~~~~~~~~~~V~~f~~E~~lL~~f~~~i~~~dPDi-i~g~N~~~ 230 (786)
T 3k59_A 156 VSIDIETTR--HG--ELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDV-IIGWNVVQ 230 (786)
T ss_dssp EEEEEEECT--TS--CEEEEEEEETTEEEEEEESSCCSCCTTCSSEEEEESSHHHHHHHHHHHHHHHCCSE-EEESSTTT
T ss_pred EEEEEEEcC--CC--CEEEEEecCCCCCeEEEEecCCCCCCCCCceEEEeCCHHHHHHHHHHHHHHcCCCE-EEecCCcc
Confidence 888888663 22 366666432 45555544210 1112344443 36774 68999865
Q ss_pred -hHHHhhc----CCCcc---------------------------CcEeehHHHHHH-HhCCCCcCcccHHHHHHHh-Ccc
Q 043928 100 -KVDGLGR----CNLRC---------------------------KTAVELGHFAAR-VLKKPHISSFGLAKLAREV-GIH 145 (192)
Q Consensus 100 -D~~~L~~----~g~~~---------------------------~~~~Dl~~~a~~-~~~~~~~~~~gL~~l~~~~-g~~ 145 (192)
|+..|.+ +|+.. +-.+|+-.+.+. .+. ..+.+|.++|+.+ |..
T Consensus 231 FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~---l~SysL~~Va~~~Lg~~ 307 (786)
T 3k59_A 231 FDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWN---FSSFSLETVAQELLGEG 307 (786)
T ss_dssp THHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCC---CSCCSHHHHHHHHHCCC
T ss_pred CcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCC---CCCCCHHHHHHHHhCCC
Confidence 9988853 44421 115676665553 122 3478999999999 865
Q ss_pred cCCCCCCC----cccCCC-CcCCCCHHHHHHHHHhHHHHHHHHHHH
Q 043928 146 NSLASGFN----GYAPSW-SARAFSNEQIKFAVHEAFAYYVIGDRV 186 (192)
Q Consensus 146 l~~~K~k~----~~~S~W-~~~~Ls~~Qi~YAa~Da~~~~~i~~~L 186 (192)
-. .... -...+| ...+ +.=+.|...||...++|+.++
T Consensus 308 K~--~~~~~~~~~eI~~~~~~~~--~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 308 KS--IDNPWDRMDEIDRRFAEDK--PALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp CC---CCHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc--ccCccccHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHh
Confidence 22 0000 011222 2222 456889999999999999885
No 38
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=67.21 E-value=2.9 Score=32.97 Aligned_cols=109 Identities=8% Similarity=-0.038 Sum_probs=70.4
Q ss_pred cEEEEeeeecCCCCCceeEEEeeeCCeEEEEecccc------------C--------CccHHHHHhh-cCCCeeEEEEee
Q 043928 39 RVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHL------------G--------QIPESLKKFL-ADETICFVGIEM 97 (192)
Q Consensus 39 ~vvG~D~Ew~~~~~~~~aliQl~~~~~~~l~~l~~~------------~--------~~p~~L~~~l-~~~~i~kvG~~~ 97 (192)
.-.=+|+|-.|+.+-.+|+.|=+++...-.||-++. + .-|.-+..++ .-|.-..+....
T Consensus 58 ~ttWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPGL~S~vi~~LP~nMVlT~QG 137 (243)
T 3q7c_A 58 AKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQG 137 (243)
T ss_dssp SCCEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTTHHHHHHHHSCTTCEEEESS
T ss_pred CCeEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeC
Confidence 466789999998777889999999987777776532 1 1233334333 345666677888
Q ss_pred hhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccC
Q 043928 98 NGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNS 147 (192)
Q Consensus 98 ~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~ 147 (192)
+.|+++|.. +|-+--.++|+.--..+..-....-=-.+..||... |+-+.
T Consensus 138 sDDIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~VWd~f~~LC~~H~GvVv~ 189 (243)
T 3q7c_A 138 SDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVE 189 (243)
T ss_dssp HHHHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEEC
T ss_pred hHHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEe
Confidence 999999999 887666788875332221111100001356677777 88777
No 39
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=62.80 E-value=38 Score=25.29 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=49.4
Q ss_pred HHHHhhcCCC----eeEEEEeehhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHhCcccCCCCCCCc
Q 043928 80 SLKKFLADET----ICFVGIEMNGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREVGIHNSLASGFNG 154 (192)
Q Consensus 80 ~L~~~l~~~~----i~kvG~~~~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g~~l~~~K~k~~ 154 (192)
.+.+|+.+.- ...|||++..|...|.+ +.- +. ..+..+.....+|..+++.++..+. + .
T Consensus 91 ~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~----------~~-~~~~~~~~d~~~l~~l~~~~~p~~~--~--~- 154 (194)
T 2gbz_A 91 QTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR----------LE-RYFHYRNLDVSTIKELARRWAPAVA--S--G- 154 (194)
T ss_dssp HHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHH----------HH-HHSCSCEEEHHHHHHHHHHHCGGGG--T--T-
T ss_pred HHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHH----------hc-ccCCCccccHHHHHHHHHHhCHHHH--h--C-
Confidence 3456666432 34899999999999987 420 00 1111121112345556655532222 1 1
Q ss_pred ccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 155 YAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 155 ~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
+..++-+-|..||.++.+++..+.+.+
T Consensus 155 ---------i~~~~~H~Al~Da~ata~ll~~~~~~~ 181 (194)
T 2gbz_A 155 ---------FAKSSAHTALSDVRDSIDELRHYRQFM 181 (194)
T ss_dssp ---------CCCCSCCSHHHHHHHHHHHHHHHHTTS
T ss_pred ---------CCCCCCcccHHHHHHHHHHHHHHHHHh
Confidence 122234668999999999999988754
No 40
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=59.22 E-value=32 Score=27.52 Aligned_cols=82 Identities=9% Similarity=-0.016 Sum_probs=59.3
Q ss_pred hcCCCeeEEEEeehhhHHHhhc--CCCc---------------cCcEeehHHHHHHHhCCCCcCcccHHHHHHHhC-ccc
Q 043928 85 LADETICFVGIEMNGKVDGLGR--CNLR---------------CKTAVELGHFAARVLKKPHISSFGLAKLAREVG-IHN 146 (192)
Q Consensus 85 l~~~~i~kvG~~~~~D~~~L~~--~g~~---------------~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~g-~~l 146 (192)
..+++|..|.+....|.-.|.+ .|-. ..++.|+..+++...+ ...||..+++.+| .+.
T Consensus 136 vl~~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~----l~~gL~~la~~L~v~r~ 211 (252)
T 2d5r_A 136 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN----LKGGLQEVAEQLELERI 211 (252)
T ss_dssp SSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTT----CCSSHHHHHHHHTCCCC
T ss_pred ccCCCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcc----cCCCHHHHHHHcCCCcc
Confidence 4467889999999999988877 4321 1268999888764221 2578999999884 333
Q ss_pred CCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhccc
Q 043928 147 SLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSSL 190 (192)
Q Consensus 147 ~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~~ 190 (192)
. . -+-|+-||+....+|-+|.+..
T Consensus 212 g--~------------------~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 212 G--P------------------QHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp S--S------------------TTSHHHHHHHHHHHHHHHHHHT
T ss_pred C--c------------------ccchhhhHHHHHHHHHHHHHHh
Confidence 3 1 2458999999999999998653
No 41
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=47.64 E-value=69 Score=26.13 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=59.6
Q ss_pred cCCCeeEEEEeehhhHHHhhc--CCCc---------------cCcEeehHHHHHHHhCCCC-----------cCcccHHH
Q 043928 86 ADETICFVGIEMNGKVDGLGR--CNLR---------------CKTAVELGHFAARVLKKPH-----------ISSFGLAK 137 (192)
Q Consensus 86 ~~~~i~kvG~~~~~D~~~L~~--~g~~---------------~~~~~Dl~~~a~~~~~~~~-----------~~~~gL~~ 137 (192)
.+++|..|.+....|.-.|.+ .+-. ..++.|+..+++...+... ..+.||.+
T Consensus 152 l~~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 231 (289)
T 1uoc_A 152 MDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTT 231 (289)
T ss_dssp SCTTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHH
T ss_pred cCCCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHH
Confidence 467899999999999988877 4321 1368999999875433211 12468999
Q ss_pred HHHHhCcc-cCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHHhcc
Q 043928 138 LAREVGIH-NSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRVLSS 189 (192)
Q Consensus 138 l~~~~g~~-l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L~~~ 189 (192)
+|+.+|++ .. . -+-|.-||+....+|.+|.+.
T Consensus 232 lA~~L~v~r~g--~------------------~HqAGsDSllT~~~F~kl~~~ 264 (289)
T 1uoc_A 232 LADELGLPRFS--I------------------FTTTGGQSLLMLLSFCQLSKL 264 (289)
T ss_dssp HHHHTTCCCCG--G------------------GGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccC--c------------------ccccHHHHHHHHHHHHHHHHH
Confidence 99988542 22 1 255899999999999998853
No 42
>1mhx_A Immunoglobulin-binding protein G; alpha-beta protein, redesigned first beta-hairpin, immune SY; 1.80A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1mi0_A
Probab=47.28 E-value=40 Score=20.69 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=27.5
Q ss_pred CcceEE-EEcCcEEEEEE--eCChHHHHHHHHHHHHhhcCCcEEEEeeeecC
Q 043928 1 MGKYEL-DIQGNNMKVTV--VDHAALIDDNVAALKALLKRQRVVGIDVKFNH 49 (192)
Q Consensus 1 ~~~y~v-~~~g~~i~v~v--t~~~~~~~~~i~~~~~~~~~~~vvG~D~Ew~~ 49 (192)
|++|++ -+-|.++.|+- ..+.+..++..+...... |+|-||.-
T Consensus 9 mdtyklfivigdrvvvt~tkavdaatAeq~FrqYan~N------gvdgeWsY 54 (65)
T 1mhx_A 9 MDTYKLFIVIGDRVVVVTTEAVDAATAEKVFKQYANDN------GVDGEWTY 54 (65)
T ss_dssp CEEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHT------TCCSEEEE
T ss_pred cceeeEEEEEcCEEEEEEeehhhHHHHHHHHHHHhhcc------CCccEEEe
Confidence 788887 46666665444 456777777776665422 44888863
No 43
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=44.80 E-value=31 Score=24.44 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCceeEEEeeeCCeEEEEeccccC-CccHHHH-HhhcCCCeeEEEEeeh
Q 043928 52 TKKAEMLILCAGNRCLIIQLCHLG-QIPESLK-KFLADETICFVGIEMN 98 (192)
Q Consensus 52 ~~~~aliQl~~~~~~~l~~l~~~~-~~p~~L~-~~l~~~~i~kvG~~~~ 98 (192)
..++.+.-..-...+..|.+..-+ ++.-.|+ .++.||+|.|+||.+.
T Consensus 16 e~K~~~~~~~k~~n~~~f~i~~EDHTLgNlLr~~Llk~p~V~fAgY~vp 64 (120)
T 1twf_K 16 ESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVE 64 (120)
T ss_dssp CCSCCEEECSSSTTEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred CceEEEEeccCCCCeEEEEEeCCCchHHHHHHHHHhhCCCeeEEeeecC
Confidence 455555555555578888876544 3445665 6779999999999873
No 44
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=41.88 E-value=9.1 Score=33.46 Aligned_cols=109 Identities=8% Similarity=-0.038 Sum_probs=69.8
Q ss_pred cEEEEeeeecCCCCCceeEEEeeeCCeEEEEecccc------------C--------CccHHHHHhh-cCCCeeEEEEee
Q 043928 39 RVVGIDVKFNHRCTKKAEMLILCAGNRCLIIQLCHL------------G--------QIPESLKKFL-ADETICFVGIEM 97 (192)
Q Consensus 39 ~vvG~D~Ew~~~~~~~~aliQl~~~~~~~l~~l~~~------------~--------~~p~~L~~~l-~~~~i~kvG~~~ 97 (192)
.-.=+|+|-.|..+-.+|+.|=.++...-.|+-++. + .-|.-+..++ .-|.-..+....
T Consensus 392 ~ttWiDIEG~p~DPVE~AiyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL~S~vi~~LP~~mV~T~QG 471 (577)
T 3mwp_A 392 AKTWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQG 471 (577)
T ss_dssp SCEEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTHHHHHHHHSCTTCEEEESS
T ss_pred CCeEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeC
Confidence 567789999998777889999999887777776532 1 1133333333 345556677788
Q ss_pred hhhHHHhhc-CCCccCcEeehHHHHHHHhCCCCcCcccHHHHHHHh-CcccC
Q 043928 98 NGKVDGLGR-CNLRCKTAVELGHFAARVLKKPHISSFGLAKLAREV-GIHNS 147 (192)
Q Consensus 98 ~~D~~~L~~-~g~~~~~~~Dl~~~a~~~~~~~~~~~~gL~~l~~~~-g~~l~ 147 (192)
..|+++|.. +|-+--.++|+.--..+.......-=..+..||... |+-+.
T Consensus 472 sdDI~kLld~hGR~DiK~iDV~lt~eqaR~fEd~VW~~~~~LC~~H~GiVv~ 523 (577)
T 3mwp_A 472 SDDIRKLLESQGRKDIKLIDIALSKTDSRKYENAVWDQYKDLCHMHTGVVVE 523 (577)
T ss_dssp HHHHHHHHHHTTCTTCEEEECCCCHHHHTTTHHHHHHHHGGGCCCBCSCEEE
T ss_pred hHHHHHHHHhcCCccceEEEeecCHHHHHHHHHHHHHHHHHHHHhcCceEEe
Confidence 999999999 887666788875332221111100002356677777 88777
No 45
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=40.59 E-value=55 Score=22.95 Aligned_cols=44 Identities=7% Similarity=0.235 Sum_probs=29.5
Q ss_pred eeEEEeeeCCeEEEEeccccC-CccHHHH-HhhcCCCeeEEEEeeh
Q 043928 55 AEMLILCAGNRCLIIQLCHLG-QIPESLK-KFLADETICFVGIEMN 98 (192)
Q Consensus 55 ~aliQl~~~~~~~l~~l~~~~-~~p~~L~-~~l~~~~i~kvG~~~~ 98 (192)
+-+=-+.-.+.+..|.+..-+ ++...|+ .++.||+|.|+||.+.
T Consensus 11 meiki~~k~~n~~~f~i~~EDHTLgNlLr~~Llkdp~V~fAgY~vp 56 (115)
T 1xpp_A 11 SSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIK 56 (115)
T ss_dssp CEEEEEEECSSEEEEEEESCCHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred eEEEEEcCCCCEEEEEEeCCCchhHHHHHHHHhcCCCeEEEEeecC
Confidence 333334444577777776544 3445665 6789999999999884
No 46
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=40.28 E-value=31 Score=29.00 Aligned_cols=171 Identities=12% Similarity=0.109 Sum_probs=100.7
Q ss_pred EcCcEEEEEEeCChHHHHHHHHHHHHh------------------h--------cCCcEEEEeeeecCC-------CCCc
Q 043928 8 IQGNNMKVTVVDHAALIDDNVAALKAL------------------L--------KRQRVVGIDVKFNHR-------CTKK 54 (192)
Q Consensus 8 ~~g~~i~v~vt~~~~~~~~~i~~~~~~------------------~--------~~~~vvG~D~Ew~~~-------~~~~ 54 (192)
+.|+.+....++++.++.++++.+... . ...++++||+|.... ..++
T Consensus 50 ~~g~~~~~i~~~~~~~~~~~~~~l~~~~~~v~e~~rf~~~~~~d~~~g~~~~~~p~l~vlsfDIEt~~~~fP~~~~~~d~ 129 (388)
T 1noy_A 50 IYGKNCAPQKFPSMKDARDWMKRMEDIGLEALGMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYE 129 (388)
T ss_dssp TTTCCCCCEECSSHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHTCSCCCCCGGGCCEEEEEEEECCSSCCCTTTCCSC
T ss_pred eCCCEEEEEeCCCHHHHHHHHHHHHhcCceeccCcHHHHHHhhhcCCcceecCCCCeEEEEEEEEeCCCCCCCCCCCCCe
Confidence 446666667788888888877665432 0 113699999999752 1346
Q ss_pred eeEEEeeeCC--eEEEEeccc-------------------------------------cCC---ccHHHHHhh--cCCCe
Q 043928 55 AEMLILCAGN--RCLIIQLCH-------------------------------------LGQ---IPESLKKFL--ADETI 90 (192)
Q Consensus 55 ~aliQl~~~~--~~~l~~l~~-------------------------------------~~~---~p~~L~~~l--~~~~i 90 (192)
+-.|++++.. +..+|.+.. .+. +-..+.+++ .||+|
T Consensus 130 Ii~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~v~~~~~E~~LL~~f~~~i~~~dPDi 209 (388)
T 1noy_A 130 IDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAI 209 (388)
T ss_dssp EEEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCcE
Confidence 7777777554 222332110 000 111333444 56665
Q ss_pred eEEEEeeh-hhHHHhhc-----CCC---------c------------------cC--cEeehHHHHHHH-hCCCCcCccc
Q 043928 91 CFVGIEMN-GKVDGLGR-----CNL---------R------------------CK--TAVELGHFAARV-LKKPHISSFG 134 (192)
Q Consensus 91 ~kvG~~~~-~D~~~L~~-----~g~---------~------------------~~--~~~Dl~~~a~~~-~~~~~~~~~g 134 (192)
.+||++. .|+..|.+ +|+ . +. -.+|+-.+++.. +. ...+.+
T Consensus 210 -i~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~~~i~GR~~lD~~~~~k~~~~~--~l~sys 286 (388)
T 1noy_A 210 -FTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFT--NLPSFS 286 (388)
T ss_dssp -EECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEEEEETTSEECCHHHHHHHHTCC--CCSCCS
T ss_pred -EEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcceEEEcCeEEeEHHHHHhhcCcC--cccCCC
Confidence 6899884 48766543 231 0 00 167887777652 32 134789
Q ss_pred HHHHHHHh-Ccc-cCCCCCCCcccCCCCcCCCCHHHHHHHHHhHHHHHHHHHHH
Q 043928 135 LAKLAREV-GIH-NSLASGFNGYAPSWSARAFSNEQIKFAVHEAFAYYVIGDRV 186 (192)
Q Consensus 135 L~~l~~~~-g~~-l~~~K~k~~~~S~W~~~~Ls~~Qi~YAa~Da~~~~~i~~~L 186 (192)
|.++|+.+ |.. .+ -++ ....|.+ .=...-+.|...||...++|+.++
T Consensus 287 L~~Va~~~Lg~~K~d--~~~--~i~~~~~-~~~~~l~~Y~~~D~~l~~~L~~kl 335 (388)
T 1noy_A 287 LESVAQHETKKGKLP--YDG--PINKLRE-TNHQRYISYNIIDVESVQAIDKIR 335 (388)
T ss_dssp HHHHHHHHHSCCCCC--CSS--CGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCC--cHH--HHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 864 33 122 2233332 112455899999999999999985
No 47
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=37.53 E-value=61 Score=21.23 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=25.4
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|...+.+.....++++++.+.|++.+....
T Consensus 69 F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~ 100 (107)
T 2cof_A 69 FRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100 (107)
T ss_dssp EEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred EEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 45556656777788999999999999998654
No 48
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=37.29 E-value=36 Score=22.82 Aligned_cols=35 Identities=6% Similarity=0.046 Sum_probs=24.3
Q ss_pred CeEEEEeccccC-CccHHHH-HhhcCCCeeEEEEeeh
Q 043928 64 NRCLIIQLCHLG-QIPESLK-KFLADETICFVGIEMN 98 (192)
Q Consensus 64 ~~~~l~~l~~~~-~~p~~L~-~~l~~~~i~kvG~~~~ 98 (192)
+.+..|.+..-+ ++.-.|+ .++.||+|.|+||.+.
T Consensus 10 ~n~~~f~i~~EDHTLgN~Lr~~L~~~p~V~fagY~vp 46 (92)
T 2pa8_L 10 SNYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQP 46 (92)
T ss_dssp TTEEEEEEETCCHHHHHHHHHHHHTSTTEEEEEEECS
T ss_pred CCeEEEEEecCchhHHHHHHHHHhcCCCeeEEEeecC
Confidence 356666665444 3445565 6779999999999873
No 49
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=34.16 E-value=75 Score=20.40 Aligned_cols=32 Identities=25% Similarity=0.072 Sum_probs=25.3
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|...+.......++++++.+.|++.+....
T Consensus 61 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 92 (103)
T 3rcp_A 61 MELIIPGEQHFYMKAVNAAERQRWLVALGSSK 92 (103)
T ss_dssp EEEEETTTEEEEEECSSHHHHHHHHHHHHTTS
T ss_pred EEEEeCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 55666667777788999999999999997543
No 50
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=34.06 E-value=65 Score=22.38 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=29.1
Q ss_pred cEEEEEEeCChHHHHHHHHHHHHhhcCCcEEEEeee
Q 043928 11 NNMKVTVVDHAALIDDNVAALKALLKRQRVVGIDVK 46 (192)
Q Consensus 11 ~~i~v~vt~~~~~~~~~i~~~~~~~~~~~vvG~D~E 46 (192)
-++.|+++++++.+++.+..+.....++.+.--|+|
T Consensus 74 lPV~Ie~Vd~~eki~~~l~~l~~~v~~Glvt~e~V~ 109 (114)
T 1o51_A 74 LPIVLEIVDEEERINLFLKEIDNIDFDGLVFTADVN 109 (114)
T ss_dssp CEEEEEEEECHHHHHHHHHHHHTCCCCSEEEEEEEE
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 488999999999999999999876665666655555
No 51
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=32.71 E-value=82 Score=20.48 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=24.8
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|...+.......++++++.+.|+..+....
T Consensus 71 F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 71 FQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp EEEEETTEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 45555556666778999999999999998654
No 52
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.72 E-value=1e+02 Score=20.12 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=24.9
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|...+.......++++++.+.|+..+....
T Consensus 69 F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~ 100 (113)
T 1pls_A 69 FKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100 (113)
T ss_dssp EEEEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 45555565677788999999999999997654
No 53
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=25.82 E-value=95 Score=20.69 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=23.8
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|.+.+.....--++++++.++||+.+....
T Consensus 69 F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~ 100 (112)
T 3cxb_B 69 FQVILSDRPCLELSAESEAEMAEWMQHLCQAV 100 (112)
T ss_dssp EEEEETTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 44454555555677899999999999998655
No 54
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=25.32 E-value=68 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEeeeecCC
Q 043928 24 IDDNVAALKALLKRQRVVGIDVKFNHR 50 (192)
Q Consensus 24 ~~~~i~~~~~~~~~~~vvG~D~Ew~~~ 50 (192)
.++-+..+++..++.++|++|+|+..-
T Consensus 24 l~~e~~~I~~~i~~~~fVAmDtEFpGv 50 (289)
T 1uoc_A 24 LYSEFAVIRQLVSQYNHVSISTEFVGT 50 (289)
T ss_dssp HHHHHHHHHHHTTTSCEEEEEEEEEC-
T ss_pred HHHHHHHHHHHHhhCCEEEEEeeecce
Confidence 333344555545678999999999754
No 55
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.05 E-value=1.2e+02 Score=20.75 Aligned_cols=32 Identities=6% Similarity=-0.097 Sum_probs=23.6
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|...+.......++++++.++|++.+....
T Consensus 82 F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~ 113 (130)
T 2d9v_A 82 LTVNLREGSRLHLCAETRDDAIAWKTALMEAN 113 (130)
T ss_dssp EEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 45555343455677999999999999998654
No 56
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=23.52 E-value=1e+02 Score=19.64 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=22.6
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKAL 34 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~ 34 (192)
+.|...+.......++++++.+.|+..+...
T Consensus 73 F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~ 103 (108)
T 1u5d_A 73 FELTSQDRRTYEFTATSPAEARDWVDQISFL 103 (108)
T ss_dssp EEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 4444454355567789999999999998754
No 57
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.33 E-value=1.1e+02 Score=19.91 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=23.7
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|...+.......++++++.+.|+..+....
T Consensus 77 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 77 FKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred EEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 33434455666678999999999999998654
No 58
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=22.93 E-value=57 Score=26.04 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=15.1
Q ss_pred HHHHHhhcCCcEEEEeeeecCC
Q 043928 29 AALKALLKRQRVVGIDVKFNHR 50 (192)
Q Consensus 29 ~~~~~~~~~~~vvG~D~Ew~~~ 50 (192)
..+++..++.++|++|+|+..-
T Consensus 15 ~~I~~~i~~~~fvAmDtEFpGv 36 (252)
T 2d5r_A 15 KKIRQVIRKYNYVAMDTEFPGV 36 (252)
T ss_dssp HHHHHHHHHCCEEEEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEeeecce
Confidence 3333333467999999999764
No 59
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=22.07 E-value=1.2e+02 Score=20.98 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=24.2
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
|.|...+.+..+..++++++.+.|+..+....
T Consensus 92 F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai 123 (150)
T 1wg7_A 92 FELKMQDKSSYLLAADSEVEMEEWITILNKIL 123 (150)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence 45555555566778999999999999997653
No 60
>2od5_A Hypothetical protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; HET: 1PE; 1.79A {Uncultured marine organism} SCOP: a.4.5.70
Probab=21.39 E-value=72 Score=21.75 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=18.6
Q ss_pred CCccHHHHHhh-cCCCeeEEEEe
Q 043928 75 GQIPESLKKFL-ADETICFVGIE 96 (192)
Q Consensus 75 ~~~p~~L~~~l-~~~~i~kvG~~ 96 (192)
+.-|+.|-++| .|++|+|||.-
T Consensus 45 gttpqqlgNvLskDkdIvkvgtv 67 (116)
T 2od5_A 45 GTTSQQLGNVLSKDKDIVKVGYI 67 (116)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEE
T ss_pred CCCHHHHhhHHhcccceeeEEEe
Confidence 56789998888 78999999983
No 61
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=21.28 E-value=1.1e+02 Score=21.23 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHHhhcCC--cEEEEee
Q 043928 19 DHAALIDDNVAALKALLKRQ--RVVGIDV 45 (192)
Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~--~vvG~D~ 45 (192)
.+++++-.-|++.+..+.+. ++||||-
T Consensus 65 ~d~~~Vl~Ele~C~k~~p~~yVRligfD~ 93 (109)
T 1rbl_M 65 AAPQQVLDEVRECRSEYGDCYIRVAGFDN 93 (109)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 46667766666666666443 8999994
No 62
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=21.00 E-value=1.1e+02 Score=22.93 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=20.1
Q ss_pred HHHHhhcC----CCeeEEEEeehhhHHHhhc
Q 043928 80 SLKKFLAD----ETICFVGIEMNGKVDGLGR 106 (192)
Q Consensus 80 ~L~~~l~~----~~i~kvG~~~~~D~~~L~~ 106 (192)
.+.+|+.. .+-+.|||++..|...|.+
T Consensus 91 ~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~ 121 (186)
T 3tr8_A 91 LTLAFLEKYVSAGKSPLCGNSVCQDRRFLSR 121 (186)
T ss_dssp HHHHHHTTTSCTTCSCEEESSTHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcEEEEEcHHHhHHHHHH
Confidence 44566631 3567899999999999987
No 63
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=20.71 E-value=1.2e+02 Score=21.14 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHHhhcCC--cEEEEee
Q 043928 19 DHAALIDDNVAALKALLKRQ--RVVGIDV 45 (192)
Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~--~vvG~D~ 45 (192)
.+++++-.-|++.+..+.+. ++||||-
T Consensus 67 ~d~~~Vl~El~~C~k~~p~~yVRligfD~ 95 (110)
T 1svd_M 67 QNVDNVLAEIEACRSAYPTHQVKLVAYDN 95 (110)
T ss_dssp CCHHHHHHHHHHHHHHSTTSEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEEEeC
Confidence 46667766666666666444 8999994
No 64
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=20.39 E-value=1.2e+02 Score=20.20 Aligned_cols=32 Identities=6% Similarity=-0.041 Sum_probs=23.0
Q ss_pred eEEEEcCcEEEEEEeCChHHHHHHHHHHHHhh
Q 043928 4 YELDIQGNNMKVTVVDHAALIDDNVAALKALL 35 (192)
Q Consensus 4 y~v~~~g~~i~v~vt~~~~~~~~~i~~~~~~~ 35 (192)
+.|...+.......++++++.+.|+..+....
T Consensus 87 F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 118 (128)
T 2dkp_A 87 FKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA 118 (128)
T ss_dssp EEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 33444444556678899999999999997543
No 65
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=20.20 E-value=1.2e+02 Score=21.41 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHHHhhcCC--cEEEEee
Q 043928 19 DHAALIDDNVAALKALLKRQ--RVVGIDV 45 (192)
Q Consensus 19 ~~~~~~~~~i~~~~~~~~~~--~vvG~D~ 45 (192)
.+++++-.-|++.+..+.+. ++||||-
T Consensus 64 ~d~~~Vl~Ele~C~k~~p~~yVRliGfD~ 92 (118)
T 3zxw_B 64 TNAQDVLNEVQQCRSEYPNCFIRVVAFDN 92 (118)
T ss_dssp CCHHHHHHHHHHHHHHCTTSEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHCCCceEEEEEEeC
Confidence 46667766666666666444 8999994
Done!