BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043930
(629 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 9/252 (3%)
Query: 69 QYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIP-ET 127
++ G + D F+ + +DL+ +PP G L ++N G +P +T
Sbjct: 277 KFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 335
Query: 128 FANMHRLEEFDVSNNRLVGPFPTVALTWKRNLY-LDLRFNNFEGELPPELFQT---GLDI 183
M L+ D+S N G P +L LDL NNF G + P L Q L
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 184 IFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242
++L +N F G IP T+ S + LS N +G +P S+G + +L+++ L N L G +
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
P E+ K L + N G +P +N N+ + +S+N LTG + I +L +L
Sbjct: 456 PQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 303 LNFTFSNNFFQG 314
SNN F G
Sbjct: 514 AILKLSNNSFSG 525
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 59/375 (15%)
Query: 19 NDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQ--YNGVLCD 76
N+F + + D + +K+ + F + N + + + D+ ++G +
Sbjct: 325 NNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 77 VFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEE 136
N + + + L +PP + +L+ H + N L G IP + ++ +L +
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 137 FDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSI 195
+ N L G P + K L L FN+ GE+P L T L+ I L++N G I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 196 PETIG--ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI--GSGEY 251
P+ IG E+LA + LS+N+F+G +P +G + L + L N +G +P+ + SG+
Sbjct: 504 PKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 252 K-------------------------NLTVF-----------------DIRSNKFHGSVP 269
NL F +I S + G
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329
+F N ++M LD+S NML+G++ +I +P+L F + ISGS D
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------FILNLGHNDISGSIPDEVG 674
Query: 330 EEKGNCLAEMEYQKL 344
+ +G + ++ KL
Sbjct: 675 DLRGLNILDLSSNKL 689
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161
P +G L + + N+L G + L+ ++S+N+ VGP P + L K YL
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYL 271
Query: 162 DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRS 221
L N F GE+P ++ G+ G + LS N+F G +P
Sbjct: 272 SLAENKFTGEIP---------------DFLSGACDTLTG------LDLSGNHFYGAVPPF 310
Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN-NIMR 280
G L+ + L N SG LP + + + L V D+ N+F G +P+S NL+ +++
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDT-LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 281 LDISDNMLTGFVSADICKLPH--LLNFTFSNNFFQG 314
LD+S N +G + ++C+ P L NN F G
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 28/251 (11%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
++D N ++ +P + +L + + NRL G IP+ + L +SNN G
Sbjct: 469 ILDFN--DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 148 FPTVALTWKRNLYLDLRFNNFEGELPPELFQ----------TGLDIIFLNHNWFR----- 192
P + ++LDL N F G +P +F+ G +++ ++ +
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 193 -GSIPETIG---ESLARYIV-----LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243
G++ E G E L R ++S + G + + + + N LSG +P
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLL 303
EIGS Y L + ++ N GS+P +L + LD+S N L G + + L L
Sbjct: 647 KEIGSMPY--LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 304 NFTFSNNFFQG 314
SNN G
Sbjct: 705 EIDLSNNNLSG 715
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 159 LYLDLRFNNFEGELPPELFQTG-LDIIFLNHNWFRGSIPETIGESLARYIV-LSSNNFTG 216
++LD+ +N G +P E+ L I+ L HN GSIP+ +G+ I+ LSSN G
Sbjct: 632 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250
+P+++ + L EI L N LSG +P E+G E
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 724
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 133 RLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWF 191
L+ +S N++ G V ++ NL +LD+ NNF +P + L + ++ N
Sbjct: 176 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 232
Query: 192 RGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250
G I + + + +SSN F G +P +K LQ + L EN+ +G +P + SG
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL-SGA 289
Query: 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSAD-ICKLPHLLNFTFSN 309
LT D+ N F+G+VP F + + + L +S N +G + D + K+ L S
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 310 NFFQGMAMECIS 321
N F G E ++
Sbjct: 350 NEFSGELPESLT 361
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL 144
++ +++L +I+ +P E+G L L ++N+L G IP+ + + L E D+SNN L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 145 VGPFPTVA 152
GP P +
Sbjct: 714 SGPIPEMG 721
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 70 YNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFA 129
Y G F +N + +D++ ++ ++P E+G + L + N + G IP+
Sbjct: 617 YGGHTSPTFDNNGS--MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 674
Query: 130 NMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP 173
++ L D+S+N+L G P +DL NN G +P
Sbjct: 675 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 115/252 (45%), Gaps = 9/252 (3%)
Query: 69 QYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIP-ET 127
++ G + D F+ + +DL+ +PP G L ++N G +P +T
Sbjct: 280 KFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 128 FANMHRLEEFDVSNNRLVGPFPTVALTWKRNLY-LDLRFNNFEGELPPELFQT---GLDI 183
M L+ D+S N G P +L LDL NNF G + P L Q L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 184 IFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242
++L +N F G IP T+ S + LS N +G +P S+G + +L+++ L N L G +
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
P E+ K L + N G +P +N N+ + +S+N LTG + I +L +L
Sbjct: 459 PQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 303 LNFTFSNNFFQG 314
SNN F G
Sbjct: 517 AILKLSNNSFSG 528
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 59/375 (15%)
Query: 19 NDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQ--YNGVLCD 76
N+F + + D + +K+ + F + N + + + D+ ++G +
Sbjct: 328 NNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 77 VFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEE 136
N + + + L +PP + +L+ H + N L G IP + ++ +L +
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 137 FDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSI 195
+ N L G P + K L L FN+ GE+P L T L+ I L++N G I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 196 PETIG--ESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI--GSGEY 251
P+ IG E+LA + LS+N+F+G +P +G + L + L N +G +P+ + SG+
Sbjct: 507 PKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 252 K-------------------------NLTVF-----------------DIRSNKFHGSVP 269
NL F +I S + G
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 270 QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329
+F N ++M LD+S NML+G++ +I +P+L F + ISGS D
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------FILNLGHNDISGSIPDEVG 677
Query: 330 EEKGNCLAEMEYQKL 344
+ +G + ++ KL
Sbjct: 678 DLRGLNILDLSSNKL 692
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161
P +G L + + N+L G + L+ ++S+N+ VGP P + L K YL
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYL 274
Query: 162 DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRS 221
L N F GE+P ++ G+ G + LS N+F G +P
Sbjct: 275 SLAENKFTGEIP---------------DFLSGACDTLTG------LDLSGNHFYGAVPPF 313
Query: 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN-NIMR 280
G L+ + L N SG LP + + + L V D+ N+F G +P+S NL+ +++
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDT-LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 281 LDISDNMLTGFVSADICKLPH--LLNFTFSNNFFQG 314
LD+S N +G + ++C+ P L NN F G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 28/251 (11%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147
++D N ++ +P + +L + + NRL G IP+ + L +SNN G
Sbjct: 472 ILDFN--DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 148 FPTVALTWKRNLYLDLRFNNFEGELPPELFQ----------TGLDIIFLNHNWFR----- 192
P + ++LDL N F G +P +F+ G +++ ++ +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 193 -GSIPETIG---ESLARYIV-----LSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243
G++ E G E L R ++S + G + + + + N LSG +P
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLL 303
EIGS Y L + ++ N GS+P +L + LD+S N L G + + L L
Sbjct: 650 KEIGSMPY--LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 304 NFTFSNNFFQG 314
SNN G
Sbjct: 708 EIDLSNNNLSG 718
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 159 LYLDLRFNNFEGELPPELFQTG-LDIIFLNHNWFRGSIPETIGESLARYIV-LSSNNFTG 216
++LD+ +N G +P E+ L I+ L HN GSIP+ +G+ I+ LSSN G
Sbjct: 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Query: 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250
+P+++ + L EI L N LSG +P E+G E
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 727
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 9/192 (4%)
Query: 133 RLEEFDVSNNRLVGPFPTVALTWKRNL-YLDLRFNNFEGELPPELFQTGLDIIFLNHNWF 191
L+ +S N++ G V ++ NL +LD+ NNF +P + L + ++ N
Sbjct: 179 ELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 192 RGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250
G I + + + +SSN F G +P +K LQ + L EN+ +G +P + SG
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL-SGA 292
Query: 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSAD-ICKLPHLLNFTFSN 309
LT D+ N F+G+VP F + + + L +S N +G + D + K+ L S
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 310 NFFQGMAMECIS 321
N F G E ++
Sbjct: 353 NEFSGELPESLT 364
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL 144
++ +++L +I+ +P E+G L L ++N+L G IP+ + + L E D+SNN L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 145 VGPFPTVA 152
GP P +
Sbjct: 717 SGPIPEMG 724
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 70 YNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFA 129
Y G F +N + +D++ ++ ++P E+G + L + N + G IP+
Sbjct: 620 YGGHTSPTFDNNGS--MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677
Query: 130 NMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP 173
++ L D+S+N+L G P +DL NN G +P
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 109/259 (42%), Gaps = 40/259 (15%)
Query: 65 TDVCQYN--GVLCDVFIDNQERFVAMIDLNKAEIAAH--LPPEMGWL--LDLIYFHANTN 118
TD C GVLCD D Q V +DL+ + +P + L L+ +Y N
Sbjct: 31 TDCCNRTWLGVLCDT--DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI-GGIN 87
Query: 119 RLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ 178
L G IP A + +L +++ + G P K + LD +N G LPP +
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 179 -TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSI------------- 222
L I + N G+IP++ G L + +S N TG +P +
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 223 ----------GYMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSVPQS 271
G K Q+I L +N L+ ++G G KNL D+R+N+ +G++PQ
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLA----FDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 272 FANLNNIMRLDISDNMLTG 290
L + L++S N L G
Sbjct: 264 LTQLKFLHSLNVSFNNLCG 282
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSAD 295
N L G +P I + L I G++P + + ++ LD S N L+G +
Sbjct: 87 NNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 296 ICKLPHLLNFTFSNNFFQG 314
I LP+L+ TF N G
Sbjct: 145 ISSLPNLVGITFDGNRISG 163
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 22/245 (8%)
Query: 72 GVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANM 131
G +C R V DL ++ LPP+ LLDL N++ I F N+
Sbjct: 22 GPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTA-LLDL-----QNNKITEIKDGDFKNL 75
Query: 132 HRLEEFDVSNNRL--VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHN 189
L + NN++ + P L LYL N ELP ++ +T L + ++ N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLS---KNQLKELPEKMPKT-LQELRVHEN 131
Query: 190 WFRGSIPETIGESLARYIV--LSSNNF--TGCLPRSIGYMKELQEIILMENQLSGCLPSE 245
+ +++ L + IV L +N +G + MK+L I + + ++
Sbjct: 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----T 185
Query: 246 IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF 305
I G +LT + NK S LNN+ +L +S N ++ + + PHL
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 306 TFSNN 310
+NN
Sbjct: 246 HLNNN 250
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 100/245 (40%), Gaps = 22/245 (8%)
Query: 72 GVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANM 131
G +C R V DL ++ LPP+ LLDL N++ I F N+
Sbjct: 22 GPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTA-LLDL-----QNNKITEIKDGDFKNL 75
Query: 132 HRLEEFDVSNNRL--VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHN 189
L + NN++ + P L LYL N ELP ++ +T L + ++ N
Sbjct: 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLS---KNQLKELPEKMPKT-LQELRVHEN 131
Query: 190 WFRGSIPETIGESLARYIV--LSSNNF--TGCLPRSIGYMKELQEIILMENQLSGCLPSE 245
+ +++ L + IV L +N +G + MK+L I + + ++
Sbjct: 132 EIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-----T 185
Query: 246 IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF 305
I G +LT + NK S LNN+ +L +S N ++ + + PHL
Sbjct: 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 245
Query: 306 TFSNN 310
+NN
Sbjct: 246 HLNNN 250
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 206 YIVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
Y++L+ N LP + + L+E++L+ENQL LP + + NLT + N+
Sbjct: 89 YLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFD-KLTNLTYLYLYHNQL 145
Query: 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
F L N+ RLD+ +N L KL L + ++N + +
Sbjct: 146 QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 206 YIVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
Y++L+ N LP + + L+E++L+ENQL LP + + NLT ++ N+
Sbjct: 89 YLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFD-KLTNLTYLNLAHNQL 145
Query: 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315
F L N+ LD+S N L KL L + N + +
Sbjct: 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
+V SN LP+ G +++ E+ L NQ + +P E+ + YK+LT+ D+ +N+
Sbjct: 14 VVRCSNKGLKVLPK--GIPRDVTELYLDGNQFT-LVPKELSN--YKHLTLIDLSNNRIST 68
Query: 267 SVPQSFANLNNIMRLDISDNML 288
QSF+N+ ++ L +S N L
Sbjct: 69 LSNQSFSNMTQLLTLILSYNRL 90
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 44/232 (18%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHA---NTNRLCGIIPETFANMHRLEEFDVSNNRL 144
+ +LN+ E++++ ++ L L ++N++ + P AN+ LE D+S+N++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA 204
LT NL + NN ++ P T LD + LN N + IG
Sbjct: 186 SDISVLAKLT---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----IG---- 233
Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
++ + L ++ L NQ+S P SG K LT + +N+
Sbjct: 234 ----------------TLASLTNLTDLDLANNQISNLAPL---SGLTK-LTELKLGANQI 273
Query: 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316
P A L + L++++N L DI + +L N T+ +F ++
Sbjct: 274 SNISP--LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 318
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 44/232 (18%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHA---NTNRLCGIIPETFANMHRLEEFDVSNNRL 144
+ +LN+ E++++ ++ L L ++N++ + P AN+ LE D+S+N++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA 204
LT NL + NN ++ P T LD + LN N + IG
Sbjct: 186 SDISVLAKLT---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----IG---- 233
Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
++ + L ++ L NQ+S P SG K LT + +N+
Sbjct: 234 ----------------TLASLTNLTDLDLANNQISNLAPL---SGLTK-LTELKLGANQI 273
Query: 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316
P A L + L++++N L DI + +L N T+ +F ++
Sbjct: 274 SNISP--LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 318
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 97/232 (41%), Gaps = 44/232 (18%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHA---NTNRLCGIIPETFANMHRLEEFDVSNNRL 144
+ +LN+ E++++ ++ L L ++N++ + P AN+ LE D+S+N++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLA 204
LT NL + NN ++ P T LD + LN N + IG
Sbjct: 186 SDISVLAKLT---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----IG---- 233
Query: 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264
++ + L ++ L NQ+S P SG K LT + +N+
Sbjct: 234 ----------------TLASLTNLTDLDLANNQISNLAPL---SGLTK-LTELKLGANQI 273
Query: 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316
P A L + L++++N L DI + +L N T+ +F ++
Sbjct: 274 SNISP--LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 318
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 43/231 (18%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANT--NRLCGIIPETFANMHRLEEFDVSNNRLV 145
+ +LN+ E++++ ++ L L + N++ + P AN+ LE D+S+N++
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVS 190
Query: 146 GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLAR 205
LT NL + NN ++ P T LD + LN N + IG
Sbjct: 191 DISVLAKLT---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----IG----- 237
Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
++ + L ++ L NQ+S P SG K LT + +N+
Sbjct: 238 ---------------TLASLTNLTDLDLANNQISNLAPL---SGLTK-LTELKLGANQIS 278
Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316
P A L + L++++N L DI + +L N T+ +F ++
Sbjct: 279 NISP--LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 322
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 43/231 (18%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANT--NRLCGIIPETFANMHRLEEFDVSNNRLV 145
+ +LN+ E++++ ++ L L + N++ + P AN+ LE D+S+N++
Sbjct: 132 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVS 189
Query: 146 GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLAR 205
LT NL + NN ++ P T LD + LN N + IG
Sbjct: 190 DISVLAKLT---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----IG----- 236
Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
++ + L ++ L NQ+S P SG K LT + +N+
Sbjct: 237 ---------------TLASLTNLTDLDLANNQISNLAPL---SGLTK-LTELKLGANQIS 277
Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316
P A L + L++++N L DI + +L N T+ +F ++
Sbjct: 278 NISP--LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 321
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 195 IPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILME----NQLSGCLPSEIGSGE 250
+P+T + + + N LP SI + L+E+ + +L L S SGE
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 251 YKNLTVFDIRSNKFHG--SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
++ L ++ G S+P S ANL N+ L I ++ L+ A I LP L
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKL 231
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 43/231 (18%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANT--NRLCGIIPETFANMHRLEEFDVSNNRLV 145
+ +LN+ E++++ ++ L L N++ + P AN+ LE D+S+N++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVS 185
Query: 146 GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLAR 205
LT NL + NN ++ P T LD + LN N + IG
Sbjct: 186 DISVLAKLT---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----IG----- 232
Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
++ + L ++ L NQ+S P SG K LT + +N+
Sbjct: 233 ---------------TLASLTNLTDLDLANNQISNLAPL---SGLTK-LTELKLGANQIS 273
Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316
P A L + L++++N L DI + +L N T+ +F ++
Sbjct: 274 NISP--LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 317
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 174 PELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSS--NNFTGCLPRSIGYMKELQEI 231
P+ + + ++ L HN R +P T ++ +L + N+ + P + L+ +
Sbjct: 20 PDDLPSNITVLNLTHNQLR-RLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVL 78
Query: 232 ILMENQLSGCLPSEIGSGEY---KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNML 288
L N+LS +I + NLT D+ SN H F N N+++LD+S N L
Sbjct: 79 NLQHNELS-----QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Query: 289 TG 290
+
Sbjct: 134 SS 135
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 43/231 (18%)
Query: 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANT--NRLCGIIPETFANMHRLEEFDVSNNRLV 145
+ +LN+ E++++ ++ L L N++ + P AN+ LE D+S+N++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVS 185
Query: 146 GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLAR 205
LT NL + NN ++ P T LD + LN N + IG
Sbjct: 186 DISVLAKLT---NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-----IG----- 232
Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
++ + L ++ L NQ+S P SG K LT + +N+
Sbjct: 233 ---------------TLASLTNLTDLDLANNQISNLAPL---SGLTK-LTELKLGANQIS 273
Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316
P A L + L++++N L DI + +L N T+ +F ++
Sbjct: 274 NISP--LAGLTALTNLELNENQL-----EDISPISNLKNLTYLTLYFNNIS 317
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 22/99 (22%)
Query: 103 EMGWLLD---LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG------PFPTVAL 153
+ WLL+ L+ + N L I+ F M RLE +SNNRLV P PT+ +
Sbjct: 246 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 305
Query: 154 TWKRNLYLDLRFNNFEGELPPELFQTGLDI---IFLNHN 189
LDL N+ L E Q D ++L+HN
Sbjct: 306 -------LDLSHNHL---LHVERNQPQFDRLENLYLDHN 334
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 90/231 (38%), Gaps = 61/231 (26%)
Query: 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN---RLVGPFPTVALTWKRNLYLD-- 162
L +++ H+N L GI F + LE+ D+S+N R+V P L L+LD
Sbjct: 57 LTILWLHSNA--LAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 163 --------------------LRFNNFEGELPPELFQTGLDIIFLNHNWFRG----SIPET 198
L+ NN + LP F+ D+ L H + G S+PE
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFR---DLGNLTHLFLHGNRIPSVPEH 170
Query: 199 IGESLARY--IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEI----GSGEYK 252
L ++L N+ P + + L + L N LS LP+E+ S +Y
Sbjct: 171 AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYL 229
Query: 253 NLT----VFDIRS-------NKFHGS-------VPQSFANLNNIMRLDISD 285
L V D R+ KF GS +PQ A ++ RL SD
Sbjct: 230 RLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLAG-RDLKRLAASD 279
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282
G Q I L N++S + S +NLT+ + SN G +F L + +LD
Sbjct: 28 GIPASSQRIFLHGNRISYVPAASFQS--CRNLTILWLHSNALAGIDAAAFTGLTLLEQLD 85
Query: 283 ISDN 286
+SDN
Sbjct: 86 LSDN 89
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265
++ + N FT + + +K LQ +IL N L + + +L D+ N +
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 266 G-SVPQSFANLNNIMRLDISDNMLTGFV 292
+ ++ A +I+ L++S NMLTG V
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSV 444
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 89 IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL--VG 146
+ L++ I+ P++ +L +L + NR+ + F LE DVS+NRL +
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 147 PFPTVALTWKRNLYLDLRFNNFE 169
P +L +LDL FN+F+
Sbjct: 117 CCPMASLR-----HLDLSFNDFD 134
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 103 EMGWLLD---LIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVG------PFPTVAL 153
+ WLL+ L+ + N L I+ F M RLE +SNNRLV P PT+ +
Sbjct: 240 DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 299
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ G K L ++ N
Sbjct: 83 LILTGNPIQSLALGAFSGLSSLQKLVALETNLASL--ENFPIGHLKTLKELNVAHNLIQS 140
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|2CUN|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
pdb|2CUN|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Pyrococcus Horikoshii Ot3
Length = 410
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 266 GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRD 325
V S + N++R + +D +LTG + A++ FT + F G R
Sbjct: 199 AKVEDSLKVVENVLRRERADLVLTGGLVANV--------FTLAKGFDLG---------RK 241
Query: 326 DVYFEEKGNCLAEMEY-QKLPTECYPVVSKPVDCSKD 361
+V F +K L +++ +++ E YP + PVD + D
Sbjct: 242 NVEFMKKKGLLDYVKHAEEILDEFYPYIRTPVDFAVD 278
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ G K L ++ N
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNLIQS 138
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ G K L ++ N
Sbjct: 83 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNLIQS 140
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 141 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ G K L ++ N
Sbjct: 82 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNLIQS 139
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ G K L ++ N
Sbjct: 82 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNLIQS 139
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 140 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 193 GSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSE-IGSGEY 251
G +P + L R N TG P + +QE+ L EN++ +G +
Sbjct: 51 GRLPHLVKLELKR------NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104
Query: 252 KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDN 286
K L ++D N+ +P SF +LN++ L+++ N
Sbjct: 105 KTLNLYD---NQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N P S + L+ ++ +E +L+ IG + L ++ N H
Sbjct: 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QLITLKKLNVAHNFIHS 142
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P F+NL N++ +D+S N + D+
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N P S + L+ ++ +E +L+ IG + L ++ N H
Sbjct: 80 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG--QLITLKKLNVAHNFIHS 137
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P F+NL N++ +D+S N + D+
Sbjct: 138 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 168
>pdb|3VST|A Chain A, The Complex Structure Of Xylc With Tris
pdb|3VST|B Chain B, The Complex Structure Of Xylc With Tris
pdb|3VST|C Chain C, The Complex Structure Of Xylc With Tris
pdb|3VST|D Chain D, The Complex Structure Of Xylc With Tris
pdb|3VSU|A Chain A, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|B Chain B, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|C Chain C, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|D Chain D, The Complex Structure Of Xylc With Xylobiose
pdb|3VSV|A Chain A, The Complex Structure Of Xylc With Xylose
pdb|3VSV|B Chain B, The Complex Structure Of Xylc With Xylose
pdb|3VSV|C Chain C, The Complex Structure Of Xylc With Xylose
pdb|3VSV|D Chain D, The Complex Structure Of Xylc With Xylose
Length = 638
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 13/112 (11%)
Query: 173 PPELFQTGLDIIFLNHNWFRGSIPE--TIGESLARYIVLSSNNFTGCLPRSI-----GYM 225
PP Q GL + NW +G I E I ++ I + TG RSI GY
Sbjct: 232 PPTADQPGL----IGPNWSKGWIIEDNIIHDAKCSAISIGKEATTGNNYRSIRKDKPGYQ 287
Query: 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN 277
+L+ + + +G +IGS +N T++D N G + F+ + N
Sbjct: 288 YQLEAV--FNAKRNGWSKEKIGSHIIRNNTIYDCGQNAIVGHLGGVFSEIYN 337
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ IG K L ++ N
Sbjct: 105 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQS 162
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 163 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ IG K L ++ N
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQS 138
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 73 VLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMH 132
VLC + Q V +DL+ + A LPP + L L A+ N L + + AN+
Sbjct: 455 VLCHL---EQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLP 508
Query: 133 RLEEFDVSNNRL 144
RL+E + NNRL
Sbjct: 509 RLQELLLCNNRL 520
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 73 VLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMH 132
VLC + Q V +DL+ + A LPP + L L A+ N L + + AN+
Sbjct: 455 VLCHL---EQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLP 508
Query: 133 RLEEFDVSNNRL 144
RL+E + NNRL
Sbjct: 509 RLQELLLCNNRL 520
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 207 IVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266
++L+ N + + LQ+++ +E L+ IG K L ++ N
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLIQS 138
Query: 267 -SVPQSFANLNNIMRLDISDNMLTGFVSADI 296
+P+ F+NL N+ LD+S N + D+
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 246 IGSGEYK---NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
IG G+ + NL V ++S++ + +F +L ++ LD+SDN L+ S+ L L
Sbjct: 67 IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 126
Query: 303 LNFTFSNNFFQGMAMECI 320
N +Q + + +
Sbjct: 127 KYLNLMGNPYQTLGVTSL 144
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 246 IGSGEYK---NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302
IG G+ + NL V ++S++ + +F +L ++ LD+SDN L+ S+ L L
Sbjct: 41 IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100
Query: 303 LNFTFSNNFFQGMAMECI 320
N +Q + + +
Sbjct: 101 KYLNLMGNPYQTLGVTSL 118
>pdb|3RFZ|B Chain B, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
pdb|3RFZ|E Chain E, Crystal Structure Of The Fimd Usher Bound To Its Cognate
Fimc:fimh Substrate
Length = 843
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 124 IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI 183
+P T DV RL P ++ N G +PPEL+ G++
Sbjct: 91 VPLTTMVQDATAHLDVGQQRLNLTIPQAFMS-----------NRARGYIPPELWDPGINA 139
Query: 184 IFLNHNWFRGSIPETIG 200
LN+N+ S+ IG
Sbjct: 140 GLLNYNFSGNSVQNRIG 156
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 252 KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLP 300
K+L V ++ NK + ++F L+N+ L++S N+L S++ LP
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,273,991
Number of Sequences: 62578
Number of extensions: 524957
Number of successful extensions: 1168
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 145
length of query: 629
length of database: 14,973,337
effective HSP length: 105
effective length of query: 524
effective length of database: 8,402,647
effective search space: 4402987028
effective search space used: 4402987028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)