Query 043930
Match_columns 629
No_of_seqs 615 out of 4333
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:38:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-32 2.8E-37 326.4 22.4 288 39-336 29-320 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-31 4.4E-36 316.2 14.0 255 83-339 163-419 (968)
3 KOG4194 Membrane glycoprotein 100.0 9.7E-32 2.1E-36 274.9 7.0 333 13-360 113-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.8E-30 8.1E-35 263.3 2.8 256 82-340 123-408 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2.2E-28 4.8E-33 251.7 -0.5 305 14-340 44-355 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 3.6E-27 7.9E-32 242.7 -1.5 304 15-338 22-330 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.2E-26 6.9E-31 225.4 2.4 244 83-337 251-541 (565)
8 KOG0618 Serine/threonine phosp 99.9 9.5E-25 2.1E-29 235.2 2.2 246 82-336 239-488 (1081)
9 KOG0472 Leucine-rich repeat pr 99.9 3.7E-25 8.1E-30 217.9 -4.2 245 82-339 66-312 (565)
10 KOG0618 Serine/threonine phosp 99.9 2.5E-23 5.3E-28 224.4 1.2 224 108-340 241-468 (1081)
11 KOG4237 Extracellular matrix p 99.8 1.6E-22 3.5E-27 199.3 -1.0 277 82-360 65-362 (498)
12 KOG4237 Extracellular matrix p 99.8 5.9E-22 1.3E-26 195.3 -3.9 254 82-337 89-359 (498)
13 PRK15370 E3 ubiquitin-protein 99.8 2.2E-19 4.9E-24 201.1 14.6 232 83-341 198-432 (754)
14 cd00116 LRR_RI Leucine-rich re 99.8 2.2E-20 4.9E-25 193.4 4.6 248 86-335 25-318 (319)
15 cd00116 LRR_RI Leucine-rich re 99.8 1.2E-20 2.7E-25 195.4 2.6 251 88-340 2-294 (319)
16 PLN03210 Resistant to P. syrin 99.8 6.5E-19 1.4E-23 210.4 14.4 238 84-334 657-903 (1153)
17 PRK15387 E3 ubiquitin-protein 99.8 3.6E-19 7.7E-24 198.3 10.7 220 84-340 242-461 (788)
18 PLN03210 Resistant to P. syrin 99.8 2.1E-18 4.6E-23 206.0 15.1 245 83-339 610-885 (1153)
19 PRK15370 E3 ubiquitin-protein 99.8 1.4E-18 3E-23 194.8 10.6 227 84-340 178-404 (754)
20 PRK15387 E3 ubiquitin-protein 99.7 3.9E-18 8.5E-23 190.0 10.7 254 14-321 213-466 (788)
21 KOG0617 Ras suppressor protein 99.7 2.3E-19 5E-24 157.9 -4.3 150 109-265 34-186 (264)
22 KOG0617 Ras suppressor protein 99.7 5.3E-18 1.1E-22 149.3 -1.3 160 82-247 31-193 (264)
23 KOG1909 Ran GTPase-activating 99.6 2.2E-16 4.8E-21 154.4 -2.1 233 82-336 28-310 (382)
24 PLN03150 hypothetical protein; 99.5 6E-14 1.3E-18 157.0 15.4 152 37-191 370-527 (623)
25 KOG1259 Nischarin, modulator o 99.5 5.2E-15 1.1E-19 141.5 2.9 203 127-339 209-414 (490)
26 KOG0532 Leucine-rich repeat (L 99.5 2.2E-15 4.7E-20 155.6 -1.8 195 106-311 73-271 (722)
27 KOG1909 Ran GTPase-activating 99.5 6.1E-15 1.3E-19 144.4 1.1 209 83-312 57-310 (382)
28 KOG3207 Beta-tubulin folding c 99.5 1.4E-14 3E-19 145.6 1.2 209 105-314 118-340 (505)
29 KOG0532 Leucine-rich repeat (L 99.5 1.5E-15 3.3E-20 156.7 -5.8 178 129-316 72-250 (722)
30 COG4886 Leucine-rich repeat (L 99.4 2.8E-13 6.1E-18 144.6 7.9 194 88-292 97-293 (394)
31 COG4886 Leucine-rich repeat (L 99.4 4.5E-13 9.9E-18 143.0 6.8 196 112-318 97-295 (394)
32 KOG1259 Nischarin, modulator o 99.4 1.4E-13 3E-18 131.8 2.2 202 130-340 180-390 (490)
33 KOG3207 Beta-tubulin folding c 99.4 6.6E-14 1.4E-18 140.7 -0.9 208 129-339 118-341 (505)
34 KOG0531 Protein phosphatase 1, 99.3 2.5E-13 5.3E-18 145.5 0.0 241 84-338 72-319 (414)
35 PF14580 LRR_9: Leucine-rich r 99.3 6E-12 1.3E-16 116.2 6.3 129 196-331 13-147 (175)
36 KOG0531 Protein phosphatase 1, 99.2 4.7E-13 1E-17 143.4 -2.5 238 85-337 50-290 (414)
37 COG5238 RNA1 Ran GTPase-activa 99.2 1.2E-12 2.6E-17 124.0 -0.3 238 83-339 29-318 (388)
38 KOG1859 Leucine-rich repeat pr 99.2 2.4E-13 5.2E-18 144.0 -6.5 179 125-314 102-293 (1096)
39 KOG2120 SCF ubiquitin ligase, 99.2 2E-12 4.4E-17 123.9 -1.7 227 83-315 135-378 (419)
40 PF14580 LRR_9: Leucine-rich r 99.1 2.5E-11 5.4E-16 112.1 4.0 113 222-340 15-129 (175)
41 PLN03150 hypothetical protein; 99.1 1.6E-10 3.6E-15 129.4 7.3 108 228-337 420-528 (623)
42 KOG2120 SCF ubiquitin ligase, 99.1 5.1E-12 1.1E-16 121.2 -4.4 183 83-289 184-376 (419)
43 KOG4658 Apoptotic ATPase [Sign 99.0 3E-10 6.4E-15 130.1 8.1 254 82-339 569-834 (889)
44 COG5238 RNA1 Ran GTPase-activa 99.0 5E-10 1.1E-14 106.4 7.2 244 20-315 25-318 (388)
45 KOG1859 Leucine-rich repeat pr 99.0 2.6E-11 5.6E-16 128.9 -3.9 181 150-340 103-295 (1096)
46 KOG4658 Apoptotic ATPase [Sign 98.9 9.8E-10 2.1E-14 125.9 6.3 248 84-337 545-807 (889)
47 PF13855 LRR_8: Leucine rich r 98.8 3.1E-09 6.7E-14 80.7 3.4 60 253-312 2-61 (61)
48 KOG2982 Uncharacterized conser 98.8 2.8E-09 6E-14 102.7 3.2 216 84-307 45-286 (418)
49 PF13855 LRR_8: Leucine rich r 98.8 4.6E-09 9.9E-14 79.8 3.2 61 276-336 1-61 (61)
50 KOG2982 Uncharacterized conser 98.8 2.7E-09 5.9E-14 102.8 1.8 231 105-338 42-291 (418)
51 KOG4341 F-box protein containi 98.7 1.9E-09 4.2E-14 108.4 0.5 251 84-335 138-437 (483)
52 KOG4579 Leucine-rich repeat (L 98.5 7.8E-09 1.7E-13 88.6 -2.1 107 179-291 53-161 (177)
53 KOG4579 Leucine-rich repeat (L 98.5 3.6E-08 7.8E-13 84.6 0.7 128 86-217 29-161 (177)
54 KOG3665 ZYG-1-like serine/thre 98.4 1.4E-07 3E-12 105.8 3.4 87 250-338 171-264 (699)
55 KOG3665 ZYG-1-like serine/thre 98.4 1.5E-07 3.3E-12 105.5 2.3 137 156-318 122-268 (699)
56 PHA03247 large tegument protei 98.2 0.0022 4.8E-08 78.1 31.3 11 255-265 2361-2371(3151)
57 KOG4341 F-box protein containi 98.2 1.1E-07 2.3E-12 96.1 -3.9 228 83-311 189-437 (483)
58 KOG1644 U2-associated snRNP A' 98.1 2.3E-06 5E-11 78.6 4.6 108 226-337 42-153 (233)
59 KOG1644 U2-associated snRNP A' 98.1 1.8E-06 3.9E-11 79.3 3.8 105 204-312 44-152 (233)
60 PRK15386 type III secretion pr 98.1 9E-06 1.9E-10 84.4 8.0 139 128-286 48-187 (426)
61 PHA03247 large tegument protei 98.1 0.0061 1.3E-07 74.5 31.4 12 24-35 2104-2115(3151)
62 PRK15386 type III secretion pr 98.0 2E-05 4.4E-10 81.8 9.7 133 106-262 50-187 (426)
63 KOG4308 LRR-containing protein 97.9 3.5E-07 7.6E-12 98.3 -5.8 38 133-170 88-129 (478)
64 KOG4308 LRR-containing protein 97.9 1.1E-07 2.4E-12 102.2 -10.6 62 278-340 378-448 (478)
65 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.7E-10 56.0 3.0 18 296-313 20-37 (44)
66 KOG2739 Leucine-rich acidic nu 97.8 9.5E-06 2.1E-10 77.8 2.4 15 251-265 90-104 (260)
67 PF12799 LRR_4: Leucine Rich r 97.8 3.3E-05 7.1E-10 53.9 4.0 36 109-145 2-37 (44)
68 KOG2123 Uncharacterized conser 97.8 2.9E-06 6.4E-11 81.5 -1.9 100 225-330 18-123 (388)
69 KOG1947 Leucine rich repeat pr 97.7 2.3E-05 5E-10 85.9 3.1 34 302-335 403-438 (482)
70 KOG2739 Leucine-rich acidic nu 97.6 2.7E-05 5.9E-10 74.8 1.3 103 224-330 41-149 (260)
71 PF13306 LRR_5: Leucine rich r 97.5 0.00014 3.1E-09 64.0 4.5 77 251-331 34-110 (129)
72 KOG1947 Leucine rich repeat pr 97.3 2.4E-05 5.3E-10 85.7 -2.3 109 130-238 186-307 (482)
73 PF13306 LRR_5: Leucine rich r 97.3 0.0005 1.1E-08 60.5 6.4 117 203-327 13-129 (129)
74 KOG2123 Uncharacterized conser 97.1 4.6E-05 1E-09 73.4 -2.5 84 83-170 18-102 (388)
75 KOG4242 Predicted myosin-I-bin 97.1 0.002 4.4E-08 66.8 8.6 108 82-191 163-280 (553)
76 PF08263 LRRNT_2: Leucine rich 96.7 0.0018 3.8E-08 44.9 3.5 38 39-76 3-43 (43)
77 KOG4242 Predicted myosin-I-bin 96.6 0.0023 5E-08 66.4 4.8 251 89-340 192-484 (553)
78 KOG3864 Uncharacterized conser 96.3 0.0011 2.3E-08 61.5 0.1 81 227-309 102-185 (221)
79 KOG3864 Uncharacterized conser 96.0 0.00075 1.6E-08 62.5 -2.2 81 253-333 102-185 (221)
80 KOG0473 Leucine-rich repeat pr 95.6 0.00048 1E-08 64.9 -5.4 90 221-315 37-126 (326)
81 KOG3671 Actin regulatory prote 95.5 0.77 1.7E-05 48.2 16.5 34 60-96 55-89 (569)
82 KOG3671 Actin regulatory prote 95.3 0.78 1.7E-05 48.2 15.8 13 108-120 77-89 (569)
83 KOG0473 Leucine-rich repeat pr 94.8 0.00059 1.3E-08 64.3 -7.3 85 82-169 40-124 (326)
84 PF00560 LRR_1: Leucine Rich R 94.6 0.015 3.3E-07 33.7 0.8 12 254-265 2-13 (22)
85 PF00560 LRR_1: Leucine Rich R 94.0 0.023 4.9E-07 32.9 0.8 12 278-289 2-13 (22)
86 PF13504 LRR_7: Leucine rich r 91.0 0.13 2.8E-06 27.6 1.2 11 158-168 3-13 (17)
87 smart00369 LRR_TYP Leucine-ric 90.9 0.2 4.3E-06 30.2 2.1 21 156-177 2-22 (26)
88 smart00370 LRR Leucine-rich re 90.9 0.2 4.3E-06 30.2 2.1 21 156-177 2-22 (26)
89 PF13516 LRR_6: Leucine Rich r 90.7 0.11 2.3E-06 30.7 0.8 16 252-267 2-17 (24)
90 PF13516 LRR_6: Leucine Rich r 88.3 0.17 3.8E-06 29.8 0.4 17 300-316 2-18 (24)
91 smart00370 LRR Leucine-rich re 87.7 0.46 1E-05 28.6 2.0 21 300-320 2-22 (26)
92 smart00369 LRR_TYP Leucine-ric 87.7 0.46 1E-05 28.6 2.0 21 300-320 2-22 (26)
93 KOG3763 mRNA export factor TAP 87.4 0.22 4.7E-06 53.3 0.7 63 250-314 216-284 (585)
94 KOG3763 mRNA export factor TAP 87.3 0.18 4E-06 53.9 0.1 64 226-290 218-284 (585)
95 PRK09718 hypothetical protein; 87.1 0.39 8.5E-06 50.8 2.4 15 252-266 228-242 (512)
96 PRK09718 hypothetical protein; 83.9 0.91 2E-05 48.1 3.2 54 179-239 185-241 (512)
97 KOG1665 AFH1-interacting prote 80.5 1.5 3.2E-05 41.4 2.9 13 227-239 197-209 (302)
98 KOG1665 AFH1-interacting prote 79.0 1.2 2.5E-05 42.0 1.7 13 254-266 258-270 (302)
99 smart00365 LRR_SD22 Leucine-ri 77.5 1.7 3.8E-05 26.3 1.6 15 300-314 2-16 (26)
100 smart00368 LRR_RI Leucine rich 76.1 1.8 4E-05 26.6 1.5 13 253-265 3-15 (28)
101 PRK15196 secreted effector pro 72.1 3.2 7E-05 43.1 3.1 8 137-144 152-159 (350)
102 PRK15196 secreted effector pro 69.7 6.8 0.00015 40.8 4.8 8 87-94 104-111 (350)
103 smart00364 LRR_BAC Leucine-ric 64.3 4.5 9.7E-05 24.5 1.3 17 157-174 3-19 (26)
104 KOG0260 RNA polymerase II, lar 60.7 3.7E+02 0.0081 32.5 18.4 11 2-12 834-844 (1605)
105 smart00367 LRR_CC Leucine-rich 49.0 10 0.00022 22.6 1.2 10 301-310 3-12 (26)
106 PRK15377 E3 ubiquitin-protein 38.7 23 0.00049 40.2 2.6 7 280-286 345-351 (782)
107 PRK15377 E3 ubiquitin-protein 33.8 67 0.0015 36.6 5.2 7 15-21 129-135 (782)
108 TIGR00864 PCC polycystin catio 33.1 24 0.00051 45.9 1.8 34 282-315 1-34 (2740)
109 TIGR00864 PCC polycystin catio 32.5 29 0.00062 45.3 2.4 33 114-146 1-33 (2740)
110 PRK15197 secreted effector pro 31.9 17 0.00037 36.6 0.3 13 180-192 261-273 (291)
111 KOG3735 Tropomodulin and leiom 31.7 14 0.00029 37.6 -0.4 16 179-194 255-270 (353)
112 PRK15197 secreted effector pro 30.6 42 0.00092 33.8 2.9 13 325-337 261-273 (291)
113 KOG3735 Tropomodulin and leiom 20.1 58 0.0012 33.3 1.5 39 179-217 227-270 (353)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-32 Score=326.41 Aligned_cols=288 Identities=29% Similarity=0.466 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCC-CCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCC
Q 043930 39 MAYVGLQAFKKAIYSDPYNHTENWV-GTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANT 117 (629)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 117 (629)
.+..+|++|+..+ .+....+.+|. ..++|.|.|+.|+. ..+++.|||++|++.+.+...|..+++|++|+|++
T Consensus 29 ~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~c~w~gv~c~~-----~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 29 EELELLLSFKSSI-NDPLKYLSNWNSSADVCLWQGITCNN-----SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN 102 (968)
T ss_pred HHHHHHHHHHHhC-CCCcccCCCCCCCCCCCcCcceecCC-----CCcEEEEEecCCCccccCChHHhCCCCCCEEECCC
Confidence 5667899999887 35566778896 46899999999973 34688888888888888888888888888888888
Q ss_pred CCCCccChhhhc-CCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccC
Q 043930 118 NRLCGIIPETFA-NMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSI 195 (629)
Q Consensus 118 n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~ 195 (629)
|++.+.++..+. ++.+|++|+|++|++++.++. ..+.+|++|+|++|.+++.++..+.. .+|++|+|++|.+.+.+
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccC
Confidence 888766665543 777777777777776654442 33555555555555555555544443 55555555555555555
Q ss_pred chhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhc
Q 043930 196 PETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN 274 (629)
Q Consensus 196 ~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 274 (629)
+..++. .+|++|+|++|.+.+.++..|+++.+|++|+|++|++.+.++..++ ++.+|++|+|++|++++.++..|.+
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh--cCCCCCEEECcCceeccccChhHhC
Confidence 554443 3455555555555555555555555555555555555555554444 4555555555555555444445555
Q ss_pred ccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 275 LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 275 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
+.+|++|+|++|.+.+.++..+.++.+|++|+|++|.+.+..+..+.++.+|++|++++|.+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 55555555555555444444444444444444444444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2e-31 Score=316.23 Aligned_cols=255 Identities=25% Similarity=0.414 Sum_probs=155.9
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+.+|+.|+|++|.+.+.++..|+++++|++|+|++|++.+.++..|+++.+|++|+|++|.+.+.++..+.++.+|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555556666
Q ss_pred ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930 163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG 240 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 240 (629)
|++|++++.++..+.. .+|++|+|++|.+.+.++..++. .+|++|+|++|.+.+.++..|.++.+|++|+|++|.+.+
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 6555555555554444 55666666666655555555443 356666666666665666666666666666666666665
Q ss_pred cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhh
Q 043930 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECI 320 (629)
Q Consensus 241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 320 (629)
.++..+. .+.+|++|+|++|.+++.++..+..+.+|+.|+|++|++.+.++..++.+.+|+.|+|++|.+.+..+..+
T Consensus 323 ~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 323 KIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred cCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 5555555 56666666666666666666666666666666666666666666666666666667777776666666667
Q ss_pred cCCCCCceecccCCccccc
Q 043930 321 SGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 321 ~~l~~L~~L~l~~N~l~~~ 339 (629)
..+.+|+.|++++|.+++.
T Consensus 401 ~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred hCCCCCCEEECcCCEeeeE
Confidence 7777777777777776643
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=9.7e-32 Score=274.89 Aligned_cols=333 Identities=16% Similarity=0.177 Sum_probs=259.8
Q ss_pred CCCCCCcchhhhcCCCcccccchhhhHHH-HHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEc
Q 043930 13 KDGKLPNDFEDQYDLKDKTFESHRMKMAY-VGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDL 91 (629)
Q Consensus 13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~-~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L 91 (629)
+...||.+.+...+|+.|+|.+|.+.... ..|..+......|...++....... | +. ...+|++|+|
T Consensus 113 ~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~--------s--fp--~~~ni~~L~L 180 (873)
T KOG4194|consen 113 ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKP--------S--FP--AKVNIKKLNL 180 (873)
T ss_pred hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCC--------C--CC--CCCCceEEee
Confidence 34566766666666777788777775442 2233333222222221111111000 1 00 2346999999
Q ss_pred CCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccC
Q 043930 92 NKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGE 171 (629)
Q Consensus 92 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 171 (629)
++|+|+.+-...|..|.+|..|.|++|+|+..-...|.+|.+|+.|+|..|+|.-.---.|.++.+|+.|.|..|+|. .
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-k 259 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-K 259 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-c
Confidence 999999988899999999999999999999888889999999999999999998644567889999999999999998 7
Q ss_pred CCchhcc--CCCCEEEecCccccccCchhh-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCccccc
Q 043930 172 LPPELFQ--TGLDIIFLNHNWFRGSIPETI-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGS 248 (629)
Q Consensus 172 ip~~~~~--~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 248 (629)
+.+..|- .++++|+|..|++...-..++ +...|+.|+|++|.|...-.+.|..+.+|++|+|++|+|+..-...|.
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~- 338 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR- 338 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH-
Confidence 7777766 899999999999985544444 457899999999999988888999999999999999999955555666
Q ss_pred CCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc---ccccCCCCCcEEEecCCccCCcchhhhcCCCC
Q 043930 249 GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS---ADICKLPHLLNFTFSNNFFQGMAMECISGSRD 325 (629)
Q Consensus 249 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 325 (629)
.|..|++|+|++|.|+..-...|..+.+|++|||++|.|...+. ..|.+|.+|+.|+|.||+|..+....|.++..
T Consensus 339 -~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 339 -VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred -HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 78999999999999997777889999999999999999886544 35778999999999999999999999999999
Q ss_pred CceecccCCccccccccCC---CCCCCCCCCCCCCCCC
Q 043930 326 DVYFEEKGNCLAEMEYQKL---PTECYPVVSKPVDCSK 360 (629)
Q Consensus 326 L~~L~l~~N~l~~~~~~~~---~~~c~~~~~~p~~Cs~ 360 (629)
|+.|||.+|-|..+....+ ...-..+.+..+-|+|
T Consensus 418 LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 418 LEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred cceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 9999999998876544333 2233344445556665
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3.8e-30 Score=263.30 Aligned_cols=256 Identities=18% Similarity=0.182 Sum_probs=164.5
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
...+|+.|+|.+|.|..+--+++..+..|+.|||+.|.|..+--..|..-.+|++|+|++|+|+......|..+.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 34567777777777776666667777777777777777765544556555667777777777766666666666677777
Q ss_pred EccCCcCccCCCchhcc--CCCCEEEecCcccccc------------------------Cchhh-hhhhhHHHHhcCCcc
Q 043930 162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGS------------------------IPETI-GESLARYIVLSSNNF 214 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~------------------------~~~~~-~~~~L~~L~l~~n~l 214 (629)
.|++|+|+ .++...|. .+|+.|+|..|+|.-. -...| +..++++|+|..|++
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 77777776 66666665 6677777777766522 11111 112355555555555
Q ss_pred cccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccc
Q 043930 215 TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSA 294 (629)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 294 (629)
...--.++.+|+.|+.|+|++|.|.....+.|. .+.+|++|+|++|+|+......|..|..|++|+|++|.|+.+-..
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~ 359 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG 359 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhh--hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence 544445555566666666666666655455554 456677777777777666666666777777777777777665555
Q ss_pred cccCCCCCcEEEecCCccCCcch---hhhcCCCCCceecccCCcccccc
Q 043930 295 DICKLPHLLNFTFSNNFFQGMAM---ECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 295 ~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
.|..+.+|++|||++|.|...+. ..|.++.+|++|+|.||+|..+.
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 66677777777777777665543 34666777777777777776443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.2e-28 Score=251.66 Aligned_cols=305 Identities=21% Similarity=0.302 Sum_probs=216.5
Q ss_pred CCCCCcchhhhcCCCcccccchhhhHHHHHHH---HHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEE
Q 043930 14 DGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQ---AFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMID 90 (629)
Q Consensus 14 ~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~---~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~ 90 (629)
...|++.++.|.+|+.|.+++|++......|. .++..+..+ +.....|+--+.+ .+..|+.||
T Consensus 44 L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~-----------N~LKnsGiP~diF---~l~dLt~lD 109 (1255)
T KOG0444|consen 44 LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD-----------NNLKNSGIPTDIF---RLKDLTILD 109 (1255)
T ss_pred hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc-----------cccccCCCCchhc---ccccceeee
Confidence 35677777777777777777777655443332 233222221 1112233333332 456678888
Q ss_pred cCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCcc
Q 043930 91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEG 170 (629)
Q Consensus 91 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 170 (629)
|++|++. +.+..+.+.+++-.|+|++|+|..+-...|.+|+.|-+|||++|++.. ++..+..+..|+.|+|++|.+..
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhH
Confidence 8888874 467777778888888888888876555667788888888888888876 66667788888888888887641
Q ss_pred CCCchh-ccCCCCEEEecCcccc-ccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccc
Q 043930 171 ELPPEL-FQTGLDIIFLNHNWFR-GSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIG 247 (629)
Q Consensus 171 ~ip~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 247 (629)
---..+ ..++|++|.+++.+-+ ..++..+.. .+|..+||+.|++. .+++.+.++.+|+.|+|++|.|+ .+-..++
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~ 265 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG 265 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH
Confidence 100111 1166777777776543 235555544 57888999999888 77888888999999999999998 4444444
Q ss_pred cCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccc-cccccccCCCCCcEEEecCCccCCcchhhhcCCCCC
Q 043930 248 SGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG-FVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDD 326 (629)
Q Consensus 248 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 326 (629)
...+|++|+|++|+|+ .++..++.|++|+.|.+.+|+++- -++..+++|.+|+.+...+|+|. ++++.++.|.+|
T Consensus 266 --~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 266 --EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred --HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 5678999999999998 788899999999999999998752 25677888888888888888775 567888888999
Q ss_pred ceecccCCcccccc
Q 043930 327 VYFEEKGNCLAEME 340 (629)
Q Consensus 327 ~~L~l~~N~l~~~~ 340 (629)
+.|.|++|++....
T Consensus 342 ~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 342 QKLKLDHNRLITLP 355 (1255)
T ss_pred HHhcccccceeech
Confidence 99999999876543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.6e-27 Score=242.73 Aligned_cols=304 Identities=19% Similarity=0.245 Sum_probs=245.3
Q ss_pred CCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCC
Q 043930 15 GKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKA 94 (629)
Q Consensus 15 ~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n 94 (629)
+.++.++..+++++.|.|...++......|..+.++...... ........|... .+.+|+.+++.+|
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~-------HN~L~~vhGELs------~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMA-------HNQLISVHGELS------DLPRLRSVIVRDN 88 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhh-------hhhhHhhhhhhc------cchhhHHHhhhcc
Confidence 457889999999999999988776665555555544321111 111112223222 4677999999999
Q ss_pred Ccccc-CchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCC
Q 043930 95 EIAAH-LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP 173 (629)
Q Consensus 95 ~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip 173 (629)
++... |+.+|.+|+.|+.|||++|++. ..+..+..-+++-.|+|++|+|..+-...+.+++.|-+|||++|++. .++
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP 166 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP 166 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC
Confidence 98653 7889999999999999999998 57788999999999999999999866677889999999999999998 788
Q ss_pred chhcc-CCCCEEEecCccccccCchhh-hhhhhHHHHhcCCcc-cccCCccccCCCCCcEEEccCCcccccCCcccccCC
Q 043930 174 PELFQ-TGLDIIFLNHNWFRGSIPETI-GESLARYIVLSSNNF-TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250 (629)
Q Consensus 174 ~~~~~-~~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 250 (629)
..+.. .+|+.|+|++|.+...--..+ ...+|+.|.+++.+- ...++..+..|.||..+||+.|++. .+++.+. +
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly--~ 243 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY--K 243 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh--h
Confidence 77766 899999999998764322222 225789999988654 3568889999999999999999998 8888888 8
Q ss_pred CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc-chhhhcCCCCCcee
Q 043930 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM-AMECISGSRDDVYF 329 (629)
Q Consensus 251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L 329 (629)
+.+|+.|+|++|+|+ .+-.....+.+|++|+|+.|+++ .++..+++|++|+.|.+.+|+|+-. ++..|.++..|+.+
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 999999999999998 55556778889999999999999 4789999999999999999998643 57789999999999
Q ss_pred cccCCcccc
Q 043930 330 EEKGNCLAE 338 (629)
Q Consensus 330 ~l~~N~l~~ 338 (629)
...+|.+.-
T Consensus 322 ~aanN~LEl 330 (1255)
T KOG0444|consen 322 HAANNKLEL 330 (1255)
T ss_pred Hhhcccccc
Confidence 999998763
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.2e-26 Score=225.37 Aligned_cols=244 Identities=20% Similarity=0.296 Sum_probs=174.6
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC---------------
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP--------------- 147 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------------- 147 (629)
+.+|..|||.+|+++. .+++++.+++|.+||+++|.|++ ++.++++| +|++|-|.+|-+..+
T Consensus 251 L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred cccceeeecccccccc-CchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 3445555555555532 45555555555555555555552 44455555 555555555533200
Q ss_pred --------------------------chhhhhCCCCCcEEEccCCcCccCCCchhcc----CCCCEEEecCccccccCch
Q 043930 148 --------------------------FPTVALTWKRNLYLDLRFNNFEGELPPELFQ----TGLDIIFLNHNWFRGSIPE 197 (629)
Q Consensus 148 --------------------------~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~----~~L~~L~L~~n~l~~~~~~ 197 (629)
.......+.+.++|++++-+++ .+++++|. .-+..++++.|++. +++.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk 405 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK 405 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhh
Confidence 0001122345556666666665 67777766 23667777888777 5666
Q ss_pred hhhhh-h-hHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcc
Q 043930 198 TIGES-L-ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL 275 (629)
Q Consensus 198 ~~~~~-~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 275 (629)
.+... . ++.+++++|.+. .++..++.+.+|..|+|++|-+. .+|..++ .+..|+.|||++|+|. .+++.+..+
T Consensus 406 ~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~--~lv~Lq~LnlS~NrFr-~lP~~~y~l 480 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMG--SLVRLQTLNLSFNRFR-MLPECLYEL 480 (565)
T ss_pred hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhh--hhhhhheecccccccc-cchHHHhhH
Confidence 65542 3 445556655555 78888999999999999999888 8898888 7888999999999998 889988889
Q ss_pred cCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930 276 NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 276 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
..|+.+-.++|+|..+.+..+.++.+|.+|||.+|.|..+ +..+++|.+|++|++.||.|.
T Consensus 481 q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 481 QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 9999999999999987777799999999999999999875 557999999999999999987
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=9.5e-25 Score=235.21 Aligned_cols=246 Identities=22% Similarity=0.310 Sum_probs=206.6
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
...+|+++|+++|++.+ ++++++.+.+|+.|++.+|+|+ .++..+..+.+|++|++.+|+++. ++..+..++.|++|
T Consensus 239 ~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeee
Confidence 56778999999999876 5688999999999999999996 577788888999999999999886 66667789999999
Q ss_pred EccCCcCccCCCchhcc---CCCCEEEecCccccccCc-hhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCc
Q 043930 162 DLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIP-ETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ 237 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~---~~L~~L~L~~n~l~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 237 (629)
||..|+|. .+++.++. ..|+.|+.+.|++...-. +......|+.|++.+|.+++.....|.++.+|++|+|++|+
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 99999997 88887666 457788888887763321 11122579999999999998888889999999999999999
Q ss_pred ccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930 238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM 317 (629)
Q Consensus 238 l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 317 (629)
|. .+++.... ++..|++|+|++|+|+ .+++.+.++..|++|...+|.|.. .+ .+..+..|+.|||+.|+|+....
T Consensus 395 L~-~fpas~~~-kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l 469 (1081)
T KOG0618|consen 395 LN-SFPASKLR-KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTL 469 (1081)
T ss_pred cc-cCCHHHHh-chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhh
Confidence 98 67766553 7899999999999999 788999999999999999999985 45 78899999999999999988766
Q ss_pred hhhcCCCCCceecccCCcc
Q 043930 318 ECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 318 ~~l~~l~~L~~L~l~~N~l 336 (629)
......++|++|||+||..
T Consensus 470 ~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 470 PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhCCCcccceeeccCCcc
Confidence 5555558999999999974
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3.7e-25 Score=217.88 Aligned_cols=245 Identities=23% Similarity=0.349 Sum_probs=204.2
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
.+..++.|++.+|++.. ++.+++++..++.|++++|++. +++..++.+.+|..|++++|++.. ++..++.+..|+.|
T Consensus 66 nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 66 NLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKE-LPDSIGRLLDLEDL 142 (565)
T ss_pred cccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceee-cCchHHHHhhhhhh
Confidence 45668888899988854 6778888889999999999888 677888888899999999998876 66778888889999
Q ss_pred EccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930 162 DLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG 240 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 240 (629)
+..+|++. .++..++. .+|..|++.+|.+....+..+....|++||+..|.++ .++..++.|.+|+.|||..|+|.
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred hccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence 99999988 67766665 7888889999998876677777778999999888777 78888999999999999999998
Q ss_pred cCCcccccCCCCCCcEEEecCCcccccchHHhh-cccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhh
Q 043930 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMEC 319 (629)
Q Consensus 241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 319 (629)
.+| +|. .|..|++|+++.|.|. .++.+++ ++.+|.+|||.+|+++. .++.++.+.+|++|||++|.|++. +..
T Consensus 220 ~lP-ef~--gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~L-p~s 293 (565)
T KOG0472|consen 220 FLP-EFP--GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSL-PYS 293 (565)
T ss_pred cCC-CCC--ccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccC-Ccc
Confidence 677 555 6888999999999998 5555554 88999999999999985 688899999999999999999875 445
Q ss_pred hcCCCCCceecccCCccccc
Q 043930 320 ISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 320 l~~l~~L~~L~l~~N~l~~~ 339 (629)
++++ +|++|.+.||.+..+
T Consensus 294 Lgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred cccc-eeeehhhcCCchHHH
Confidence 7777 899999999988654
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=2.5e-23 Score=224.39 Aligned_cols=224 Identities=22% Similarity=0.312 Sum_probs=161.8
Q ss_pred cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEe
Q 043930 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFL 186 (629)
Q Consensus 108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L 186 (629)
.+|+++++++|++.+ +++.++.+.+|+.|++.+|+|+. ++..+..+.+|+.|++.+|++. .++..... +.|++|+|
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 355555555555553 33555556666666666665533 4444555556666666666665 45555443 77888888
Q ss_pred cCccccccCchhhhh---hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930 187 NHNWFRGSIPETIGE---SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263 (629)
Q Consensus 187 ~~n~l~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~ 263 (629)
..|.|. .++..+.. ..|+.|+.+.|.+.......=..+..|+.|++.+|.+++..-..+. +.++|++|+|++|+
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~--~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV--NFKHLKVLHLSYNR 394 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc--cccceeeeeecccc
Confidence 888877 44444433 3467777777777643322222356899999999999977655565 68999999999999
Q ss_pred ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
|...-...+.+|..|++|+||||+++. ++..+.++..|++|...+|+|..+. .+..+..|+.||+++|.|+...
T Consensus 395 L~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred cccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeech--hhhhcCcceEEecccchhhhhh
Confidence 996666778899999999999999996 6788999999999999999998765 6888999999999999998543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.6e-22 Score=199.25 Aligned_cols=277 Identities=15% Similarity=0.147 Sum_probs=162.3
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccC-CcCCCCchhhhhCCCCCcE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSN-NRLVGPFPTVALTWKRNLY 160 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~ 160 (629)
.....+.|+|..|.|+.+-+.+|+.+++|+.|||++|+|+.+-+++|.++.+|..|.+.+ |+|+..-...|.++..|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 344578899999999888888999999999999999999999999999999988887766 8998877778888999999
Q ss_pred EEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhh-hhhhHHHHhcCCccc-c-----------cCCccccCC
Q 043930 161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIG-ESLARYIVLSSNNFT-G-----------CLPRSIGYM 225 (629)
Q Consensus 161 L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~-~~~L~~L~l~~n~l~-~-----------~~~~~l~~l 225 (629)
|.+.-|++. .+....|. .+|..|.|.+|.+...--..+. ...++.+.+..|.+- + ..+..+++.
T Consensus 145 LllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 999999887 66666665 7888888888887732221232 246677777666521 1 111222222
Q ss_pred CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccch-HHhhcccCccceecccccccccccccccCCCCCcE
Q 043930 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP-QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN 304 (629)
Q Consensus 226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 304 (629)
..+.-..|.++++..+-...+.. .++.+..--.+.+...++.+ ..|..|.+|++|+|++|+|+++...+|.++.+|++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c-~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLC-SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred eecchHHHHHHHhcccchhhhhh-hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 22333333333333111111110 11111111111222222222 33455555555555555555555555555555555
Q ss_pred EEecCCccCCcchhhhcCCCCCceecccCCccccccccCCCC----CCCCCCCCCCCCCC
Q 043930 305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPT----ECYPVVSKPVDCSK 360 (629)
Q Consensus 305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~----~c~~~~~~p~~Cs~ 360 (629)
|.|.+|+|..+...+|.++..|+.|+|.+|+|+...+..+.. ....+..+++.|+|
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 555555555555555555555555555555555443322222 22344455555554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=5.9e-22 Score=195.31 Aligned_cols=254 Identities=15% Similarity=0.116 Sum_probs=166.6
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCC-CCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANT-NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLY 160 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 160 (629)
.+++|+.|||++|+|+.+-+++|..|..|..|.+.+ |+|+..--+.|++|..|+.|.+.-|++.-+..+.|..+.+|..
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 457799999999999999999999999998887776 8999877889999999999999999999888899999999999
Q ss_pred EEccCCcCccCCCchhcc--CCCCEEEecCcccccc------------Cchhhhh-hhhHHHHhcCCcccccCCccccC-
Q 043930 161 LDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGS------------IPETIGE-SLARYIVLSSNNFTGCLPRSIGY- 224 (629)
Q Consensus 161 L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~------------~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~- 224 (629)
|.|.+|.+. .+....|. ..++.+.+..|.+... .+..++. ....-..+.+.++...-...|..
T Consensus 169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence 999999998 77776665 7888888888873311 1111110 11112222222222221111111
Q ss_pred CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcE
Q 043930 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN 304 (629)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 304 (629)
++.+..-..+.+...+..+..-+ ..|.+|++|+|++|+|+++-..+|.++..|++|.|..|+|..+....|.++..|++
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf-~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~t 326 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCF-KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKT 326 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHH-hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccccee
Confidence 11111111222222222222221 25666666666666666655666666666666666666666555556666666666
Q ss_pred EEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930 305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
|+|.+|+|+.+....|..+..|..|+|-+|.+.
T Consensus 327 L~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 327 LSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eeecCCeeEEEecccccccceeeeeehccCccc
Confidence 666666666666666666666666666666554
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2.2e-19 Score=201.14 Aligned_cols=232 Identities=24% Similarity=0.339 Sum_probs=179.8
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
...|+.|+|++|+|.. ++..+. .+|++|+|++|+|++ ++..+. .+|+.|+|++|+|.. ++..+. .+|++|+
T Consensus 198 p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~ 268 (754)
T PRK15370 198 PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRITE-LPERLP--SALQSLD 268 (754)
T ss_pred ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccCc-CChhHh--CCCCEEE
Confidence 3568999999999975 555443 589999999999984 555443 479999999999985 565553 5899999
Q ss_pred ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930 163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 242 (629)
|++|+|+ .++..+. .+|++|+|++|.|++ ++..+. ..|++|++++|++.+ ++..+. .+|++|++++|.|+ .+
T Consensus 269 Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~L 340 (754)
T PRK15370 269 LFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT-SL 340 (754)
T ss_pred CcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc--ccceeccccCCccc-cC
Confidence 9999998 6777654 589999999999984 454443 479999999999984 444332 68999999999998 46
Q ss_pred CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcc---hhh
Q 043930 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA---MEC 319 (629)
Q Consensus 243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~---~~~ 319 (629)
+..+. .+|+.|+|++|+|+ .++..+. .+|++|+|++|.|++ ++..+. ..|+.|++++|+|.++. ...
T Consensus 341 P~~l~----~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~ 410 (754)
T PRK15370 341 PASLP----PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPHF 410 (754)
T ss_pred Chhhc----CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHHH
Confidence 65543 68999999999998 5665553 689999999999986 454443 36999999999998652 334
Q ss_pred hcCCCCCceecccCCccccccc
Q 043930 320 ISGSRDDVYFEEKGNCLAEMEY 341 (629)
Q Consensus 320 l~~l~~L~~L~l~~N~l~~~~~ 341 (629)
+..+..+..|+|.+|.|.....
T Consensus 411 ~~~~~~l~~L~L~~Npls~~tl 432 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPFSERTI 432 (754)
T ss_pred hhcCCCccEEEeeCCCccHHHH
Confidence 4556888999999999875433
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=2.2e-20 Score=193.44 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=129.1
Q ss_pred EEEEEcCCCCcccc----CchhhhCCcCCCEEECCCCCCCc------cChhhhcCCCCCcEEEccCCcCCCCchhhhhCC
Q 043930 86 VAMIDLNKAEIAAH----LPPEMGWLLDLIYFHANTNRLCG------IIPETFANMHRLEEFDVSNNRLVGPFPTVALTW 155 (629)
Q Consensus 86 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 155 (629)
|+.|+|.++.+... +...+..+.+|++|+++++.+.+ .+...|..+.+|++|+|++|.+.+.....+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 66666666665332 33344455566667666665541 123445556677777777766665444444444
Q ss_pred CC---CcEEEccCCcCccCCCch----hcc--CCCCEEEecCccccccCchhhhh-----hhhHHHHhcCCccccc----
Q 043930 156 KR---NLYLDLRFNNFEGELPPE----LFQ--TGLDIIFLNHNWFRGSIPETIGE-----SLARYIVLSSNNFTGC---- 217 (629)
Q Consensus 156 ~~---L~~L~Ls~n~l~~~ip~~----~~~--~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~l~~n~l~~~---- 217 (629)
.+ |++|+|++|++.+..... +.. .+|++|+|++|.+++.....+.. .+|++|++++|.+.+.
T Consensus 105 ~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 184 (319)
T cd00116 105 LRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184 (319)
T ss_pred hccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH
Confidence 44 777777776665211111 111 45666677666666432211111 1345555555554421
Q ss_pred CCccccCCCCCcEEEccCCcccccC----CcccccCCCCCCcEEEecCCcccccchHHhhc-----ccCccceecccccc
Q 043930 218 LPRSIGYMKELQEIILMENQLSGCL----PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN-----LNNIMRLDISDNML 288 (629)
Q Consensus 218 ~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l 288 (629)
+...+..+.+|++|+|++|.|++.. ...+. .+.+|++|+|++|.+++.....+.. ...|++|+|++|.|
T Consensus 185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~--~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc--ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 1122334456777777776665322 12222 4566777777777666432222222 25667777777766
Q ss_pred ccc----ccccccCCCCCcEEEecCCccCCc----chhhhcCC-CCCceecccCCc
Q 043930 289 TGF----VSADICKLPHLLNFTFSNNFFQGM----AMECISGS-RDDVYFEEKGNC 335 (629)
Q Consensus 289 ~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l-~~L~~L~l~~N~ 335 (629)
++. +...+..+.+|++|++++|.+++. ....+... ..|+.|++.+|.
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 521 122344456677777777776654 23333333 566666666554
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.2e-20 Score=195.38 Aligned_cols=251 Identities=20% Similarity=0.182 Sum_probs=187.4
Q ss_pred EEEcCCCCccc-cCchhhhCCcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCC------CchhhhhCCC
Q 043930 88 MIDLNKAEIAA-HLPPEMGWLLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVG------PFPTVALTWK 156 (629)
Q Consensus 88 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~l~~l~ 156 (629)
.|+|..+.+.+ .....+..+.+|++|+|++|.+++. +...+..+++|++|+++++.+.+ .+...+..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46777777763 3445667788899999999998543 45566778889999999998872 2334567788
Q ss_pred CCcEEEccCCcCccCCCchhcc-C---CCCEEEecCccccccCchh----hhh--hhhHHHHhcCCccccc----CCccc
Q 043930 157 RNLYLDLRFNNFEGELPPELFQ-T---GLDIIFLNHNWFRGSIPET----IGE--SLARYIVLSSNNFTGC----LPRSI 222 (629)
Q Consensus 157 ~L~~L~Ls~n~l~~~ip~~~~~-~---~L~~L~L~~n~l~~~~~~~----~~~--~~L~~L~l~~n~l~~~----~~~~l 222 (629)
+|++|+|++|.+.+.....+.. . +|++|+|++|.+++..... +.. .+|++|++++|.+++. +...|
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999997544444433 3 3999999999988533222 222 3689999999998843 34556
Q ss_pred cCCCCCcEEEccCCcccccCC----cccccCCCCCCcEEEecCCccccc----chHHhhcccCccceecccccccccccc
Q 043930 223 GYMKELQEIILMENQLSGCLP----SEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGFVSA 294 (629)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~~p----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 294 (629)
..+.+|++|+|++|.+++... ..+. .+.+|++|+|++|.|++. +...+..+.+|++|+|++|.+++....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLK--ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHH--hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 777899999999999985322 2233 457999999999999754 334556788999999999999864333
Q ss_pred cccC-----CCCCcEEEecCCccCCc----chhhhcCCCCCceecccCCcccccc
Q 043930 295 DICK-----LPHLLNFTFSNNFFQGM----AMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 295 ~l~~-----l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
.+.. ..+|++|+|++|.+++. ....+..+.+|++|++++|.+.+..
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 3322 47999999999999743 2345667789999999999999764
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=6.5e-19 Score=210.36 Aligned_cols=238 Identities=19% Similarity=0.185 Sum_probs=138.1
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
.+|+.|+|++|.....++..|+++.+|++|+|++|...+.++..+ ++++|++|+|++|.....++. ...+|++|+|
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L 732 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDL 732 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeec
Confidence 344444444444334444444444445555554443222233222 344444555544433222221 1234445555
Q ss_pred cCCcCccCCCchhccCCCCEEEecCcccccc---C---chh-h-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccC
Q 043930 164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGS---I---PET-I-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILME 235 (629)
Q Consensus 164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~---~---~~~-~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 235 (629)
++|.+. .++..+...+|++|++.++..... + ... + ...+|+.|+|++|...+.++..|++|.+|++|+|++
T Consensus 733 ~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 733 DETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 555544 444433334455555444221100 0 000 0 113678888888877777888888889999999988
Q ss_pred CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCc-cCC
Q 043930 236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF-FQG 314 (629)
Q Consensus 236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~ 314 (629)
|...+.++..+ .+.+|++|+|++|.....++. ...+|++|+|++|.|.. ++..+..+.+|++|+|++|. |.+
T Consensus 812 C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 812 CINLETLPTGI---NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CCCcCeeCCCC---CccccCEEECCCCCccccccc---cccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCc
Confidence 76555676655 478889999988754434433 23578889999998875 57778888999999998854 444
Q ss_pred cchhhhcCCCCCceecccCC
Q 043930 315 MAMECISGSRDDVYFEEKGN 334 (629)
Q Consensus 315 ~~~~~l~~l~~L~~L~l~~N 334 (629)
+...+..+.+|+.++++++
T Consensus 885 -l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 885 -VSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred -cCcccccccCCCeeecCCC
Confidence 4445667788888887765
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=3.6e-19 Score=198.29 Aligned_cols=220 Identities=20% Similarity=0.240 Sum_probs=128.5
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
.+|+.|+|++|+|+. ++. ...+|++|+|++|.|.. ++. .+.+|+.|+|++|+|+. ++. ...+|++|+|
T Consensus 242 ~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdL 309 (788)
T PRK15387 242 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 309 (788)
T ss_pred CCCcEEEecCCccCc-ccC---cccccceeeccCCchhh-hhh---chhhcCEEECcCCcccc-ccc---cccccceeEC
Confidence 457777777777764 332 23566777777776663 332 22456677777777664 332 2356777777
Q ss_pred cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
++|+|+ .++.. ..+|+.|++++|.|++ ++... .+|++|+|++|+|.+ ++.. ..+|+.|++++|+|. .++
T Consensus 310 S~N~L~-~Lp~l--p~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP 378 (788)
T PRK15387 310 SDNQLA-SLPAL--PSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLP 378 (788)
T ss_pred CCCccc-cCCCC--cccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCc
Confidence 777776 44431 2456667777776663 33211 356677777777663 3322 245666677777666 344
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
.. ..+|+.|+|++|+|++ ++.. ..+|+.|+|++|.|++ ++.. ..+|+.|+|++|+|+. +++.|.++
T Consensus 379 ~l-----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L 444 (788)
T PRK15387 379 AL-----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHL 444 (788)
T ss_pred cc-----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhc
Confidence 32 2456777777777663 3322 2456777777777764 3332 2356667777777764 34556667
Q ss_pred CCCceecccCCcccccc
Q 043930 324 RDDVYFEEKGNCLAEME 340 (629)
Q Consensus 324 ~~L~~L~l~~N~l~~~~ 340 (629)
.+|+.|+|++|.|++..
T Consensus 445 ~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 445 SSETTVNLEGNPLSERT 461 (788)
T ss_pred cCCCeEECCCCCCCchH
Confidence 77777777777776543
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=2.1e-18 Score=206.01 Aligned_cols=245 Identities=16% Similarity=0.151 Sum_probs=162.5
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
..+|+.|+|.+|++.. +...+..+.+|++|+|++|...+.++ .+..+.+|++|+|++|.....++..+.++.+|++|+
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 4567888888887754 45566778888888888765444454 367778888888888776666777788888888888
Q ss_pred ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc--------------------
Q 043930 163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI-------------------- 222 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-------------------- 222 (629)
|++|.....++..+...+|++|+|++|...+.++... .+|++|+|++|.+. .++..+
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccchhhccc
Confidence 8876554567666655777777777775544443321 34566666666654 222211
Q ss_pred ----------cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930 223 ----------GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV 292 (629)
Q Consensus 223 ----------~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 292 (629)
....+|++|+|++|...+.++..++ ++.+|++|+|++|...+.++..+ ++.+|+.|+|++|.....+
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 1124677777777766666777666 67777777777764333455444 5677777777777543333
Q ss_pred cccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccC-Cccccc
Q 043930 293 SADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKG-NCLAEM 339 (629)
Q Consensus 293 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~-N~l~~~ 339 (629)
+. ...+|++|+|++|.|..+ +..+..+.+|++|+|++ |.+...
T Consensus 842 p~---~~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 842 PD---ISTNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred cc---cccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCcc
Confidence 32 235788888888888754 55678888999999887 455543
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.76 E-value=1.4e-18 Score=194.85 Aligned_cols=227 Identities=19% Similarity=0.338 Sum_probs=178.2
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
.+...|+|++++++. ++..+. .+|++|+|++|+|+. ++..+. .+|++|+|++|+|+. ++..+. .+|++|+|
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 457889999998875 555443 589999999999995 555443 589999999999986 555443 47999999
Q ss_pred cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
++|+|. .++..+. .+|++|+|++|.|+ .++..+. .+|+.|+|++|+|++ ++..+. .+|++|+|++|.++ .++
T Consensus 249 s~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP 320 (754)
T PRK15370 249 SINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALP 320 (754)
T ss_pred cCCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCC
Confidence 999998 7877654 68999999999998 4665554 479999999999984 444443 57999999999998 455
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
..+ ..+|++|++++|.|++ ++..+. .+|+.|+|++|+|+. ++..+ ..+|++|+|++|.|..+... +.
T Consensus 321 ~~l----~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~-l~-- 387 (754)
T PRK15370 321 ETL----PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPEN-LP-- 387 (754)
T ss_pred ccc----cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHh-HH--
Confidence 544 3689999999999984 665553 689999999999985 45544 36899999999999976443 33
Q ss_pred CCCceecccCCcccccc
Q 043930 324 RDDVYFEEKGNCLAEME 340 (629)
Q Consensus 324 ~~L~~L~l~~N~l~~~~ 340 (629)
..|+.|++++|.|....
T Consensus 388 ~sL~~LdLs~N~L~~LP 404 (754)
T PRK15370 388 AALQIMQASRNNLVRLP 404 (754)
T ss_pred HHHHHHhhccCCcccCc
Confidence 36999999999998653
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=3.9e-18 Score=190.02 Aligned_cols=254 Identities=18% Similarity=0.213 Sum_probs=183.4
Q ss_pred CCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCC
Q 043930 14 DGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNK 93 (629)
Q Consensus 14 ~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~ 93 (629)
..+||+.+. .+|+.|++.+|++......+ ..+...+ ...+.+..+. ....+|+.|+|++
T Consensus 213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp------------~~Lk~Ld-Ls~N~LtsLP------~lp~sL~~L~Ls~ 271 (788)
T PRK15387 213 LTTLPDCLP--AHITTLVIPDNNLTSLPALP------------PELRTLE-VSGNQLTSLP------VLPPGLLELSIFS 271 (788)
T ss_pred CCcCCcchh--cCCCEEEccCCcCCCCCCCC------------CCCcEEE-ecCCccCccc------CcccccceeeccC
Confidence 446777664 47899999998876422100 0111100 1111222111 1245789999999
Q ss_pred CCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCC
Q 043930 94 AEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP 173 (629)
Q Consensus 94 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip 173 (629)
|.|.. ++. .+.+|+.|+|++|+|+. ++. .+.+|++|+|++|+|++ ++.. ..+|+.|++++|+|+ .++
T Consensus 272 N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 272 NPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred Cchhh-hhh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence 99865 333 23678899999999984 343 35789999999999987 3332 346889999999998 666
Q ss_pred chhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCC
Q 043930 174 PELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKN 253 (629)
Q Consensus 174 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~ 253 (629)
. +..+|++|+|++|+|++ ++... .+|+.|++++|.|.+ ++.. ..+|+.|+|++|.|+ .++.. ..+
T Consensus 339 ~--lp~~Lq~LdLS~N~Ls~-LP~lp--~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l-----~s~ 403 (788)
T PRK15387 339 T--LPSGLQELSVSDNQLAS-LPTLP--SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL-----PSE 403 (788)
T ss_pred c--cccccceEecCCCccCC-CCCCC--cccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc-----ccC
Confidence 4 22689999999999994 44432 468889999999984 5543 357999999999998 45543 357
Q ss_pred CcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhc
Q 043930 254 LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECIS 321 (629)
Q Consensus 254 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 321 (629)
|+.|+|++|+|++ ++.. ..+|+.|+|++|+|+. ++..|+++.+|+.|+|++|.|++.....+.
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 9999999999984 5543 3468899999999985 688899999999999999999988666553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.3e-19 Score=157.86 Aligned_cols=150 Identities=27% Similarity=0.468 Sum_probs=65.5
Q ss_pred CCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEec
Q 043930 109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLN 187 (629)
Q Consensus 109 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~ 187 (629)
+++.|.|++|+++ .++..+..|.+|+.|++++|+|+. ++..+..+.+|++|+++-|++. .++..++. ..|++|||.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3444444444444 222334444444444444444443 3444444444444444444443 33333322 233333333
Q ss_pred Cccccc-cCchh-hhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc
Q 043930 188 HNWFRG-SIPET-IGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265 (629)
Q Consensus 188 ~n~l~~-~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~ 265 (629)
+|.+.. .++.. |+...|+.|+|++|.+. .++..++++++|+.|.+.+|.+. .++..++ .+..|++|++.+|+++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig--~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG--DLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH--HHHHHHHHhcccceee
Confidence 332221 12222 22334555555555554 44445555555555555555554 4444444 4455555555555544
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=5.3e-18 Score=149.34 Aligned_cols=160 Identities=26% Similarity=0.481 Sum_probs=141.8
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
...+++.|.|++|+++. ++..|..|++|+.|++.+|+|. .++..++.|.+|+.|+++-|++.. ++..|+.+..|++|
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhh
Confidence 35678999999999965 6678999999999999999998 688899999999999999999875 88999999999999
Q ss_pred EccCCcCcc-CCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930 162 DLRFNNFEG-ELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL 238 (629)
Q Consensus 162 ~Ls~n~l~~-~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 238 (629)
||.+|++.. .++..+|. ..|+.|+|++|.|+ .++..++. .+|+.|.+.+|.+. .++..++.+..|++|++.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 999999874 46666666 88999999999998 77888887 58999999999988 6889999999999999999999
Q ss_pred cccCCcccc
Q 043930 239 SGCLPSEIG 247 (629)
Q Consensus 239 ~~~~p~~~~ 247 (629)
+ .++..++
T Consensus 186 ~-vlppel~ 193 (264)
T KOG0617|consen 186 T-VLPPELA 193 (264)
T ss_pred e-ecChhhh
Confidence 8 7776665
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.56 E-value=2.2e-16 Score=154.36 Aligned_cols=233 Identities=16% Similarity=0.195 Sum_probs=126.8
Q ss_pred CcccEEEEEcCCCCcccc----CchhhhCCcCCCEEECCCC---CCCccChh-------hhcCCCCCcEEEccCCcCCCC
Q 043930 82 QERFVAMIDLNKAEIAAH----LPPEMGWLLDLIYFHANTN---RLCGIIPE-------TFANMHRLEEFDVSNNRLVGP 147 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~~~~~-------~~~~l~~L~~L~Ls~n~l~~~ 147 (629)
....++.|+|++|.|... +...+.+.++|+..++++- ++...++. ++.++.+|++||||+|.|.-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456689999999998654 3344566788888888763 23223333 345566899999999988643
Q ss_pred ch----hhhhCCCCCcEEEccCCcCccCCCchh--------------c-cCCCCEEEecCccccccCchhhhhhhhHHHH
Q 043930 148 FP----TVALTWKRNLYLDLRFNNFEGELPPEL--------------F-QTGLDIIFLNHNWFRGSIPETIGESLARYIV 208 (629)
Q Consensus 148 ~~----~~l~~l~~L~~L~Ls~n~l~~~ip~~~--------------~-~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ 208 (629)
.. ..+..+..|++|.|.+|.+. ...... . ..+|+++++.+|++.......+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A-------- 178 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALA-------- 178 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHH--------
Confidence 33 34567888999999999875 222111 0 15677777777777644332222
Q ss_pred hcCCcccccCCccccCCCCCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccc
Q 043930 209 LSSNNFTGCLPRSIGYMKELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMR 280 (629)
Q Consensus 209 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~ 280 (629)
..|.....|+++.+..|.|... +...+. .+++|++|||.+|-|+.. +...+..|++|++
T Consensus 179 -----------~~~~~~~~leevr~~qN~I~~eG~~al~eal~--~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 179 -----------EAFQSHPTLEEVRLSQNGIRPEGVTALAEALE--HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred -----------HHHHhccccceEEEecccccCchhHHHHHHHH--hCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 2233334455555555544311 111122 445555555555544421 2233444555555
Q ss_pred eeccccccccccccccc-----CCCCCcEEEecCCccCCc----chhhhcCCCCCceecccCCcc
Q 043930 281 LDISDNMLTGFVSADIC-----KLPHLLNFTFSNNFFQGM----AMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 281 L~Ls~N~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~l 336 (629)
|++++|.+.......|. ...+|++|+|.+|.|+.. +..++.....|+.|+|++|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 55555555443332221 234555555555555432 122333345555555555555
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=6e-14 Score=156.95 Aligned_cols=152 Identities=20% Similarity=0.280 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC----CcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCE
Q 043930 37 MKMAYVGLQAFKKAIYSDPYNHTENWVGTDVC----QYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIY 112 (629)
Q Consensus 37 l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c----~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 112 (629)
...+..+|+.+|..+... ...+|.+..|+ .|.|+.|..........++.|+|++|++.+.++..|++|.+|++
T Consensus 370 ~~~~~~aL~~~k~~~~~~---~~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~ 446 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLP---LRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQS 446 (623)
T ss_pred CchHHHHHHHHHHhcCCc---ccCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCE
Confidence 345677888888876321 12478775442 69999996432222346999999999999999999999999999
Q ss_pred EECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCcc
Q 043930 113 FHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNW 190 (629)
Q Consensus 113 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~ 190 (629)
|+|++|+|.|.++..|+.+.+|+.|+|++|+|.+.++..++++.+|++|+|++|+|+|.++..+.. .++..+++.+|.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 999999999999999999999999999999999999999999999999999999999999988765 456677777665
Q ss_pred c
Q 043930 191 F 191 (629)
Q Consensus 191 l 191 (629)
.
T Consensus 527 ~ 527 (623)
T PLN03150 527 G 527 (623)
T ss_pred c
Confidence 3
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.51 E-value=5.2e-15 Score=141.48 Aligned_cols=203 Identities=19% Similarity=0.181 Sum_probs=135.8
Q ss_pred hhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecC-ccccccCchhhhh-hhh
Q 043930 127 TFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNH-NWFRGSIPETIGE-SLA 204 (629)
Q Consensus 127 ~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~-n~l~~~~~~~~~~-~~L 204 (629)
.+..+++|+.+.++.+.-..+ -.....-..|+.|.+.+..+. ..+..+-...+..+.... ...+|..-..+.. ..|
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred chHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 344455566666665543321 111222345666666555443 222221112222222111 1122222222211 468
Q ss_pred HHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284 (629)
Q Consensus 205 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 284 (629)
++|||++|.|+ ++.++..-+.+++.|++++|.|. .+-. +. .|.+|+.|||++|.++ .+..|-..|.|++.|.|+
T Consensus 287 telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La--~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 287 TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA--ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh--hcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 99999999998 67777888899999999999998 3332 54 6899999999999998 555677788999999999
Q ss_pred cccccccccccccCCCCCcEEEecCCccCCcch-hhhcCCCCCceecccCCccccc
Q 043930 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM-ECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
+|.|.+. ..+.++-+|..||+++|+|..+.. ..|.++++|+.|.|.+|.|...
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999753 457888999999999999987653 5788999999999999998754
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.49 E-value=2.2e-15 Score=155.57 Aligned_cols=195 Identities=25% Similarity=0.403 Sum_probs=155.6
Q ss_pred CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEE
Q 043930 106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIF 185 (629)
Q Consensus 106 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~ 185 (629)
.+..-..+||+.|++. .++..+..+..|+.|.|..|.|.. ++..++++..|.+|||+.|++. .++..++.--|+.|.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEE
Confidence 3555667888888888 577788888888999999988876 7788889999999999999998 888888888899999
Q ss_pred ecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930 186 LNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264 (629)
Q Consensus 186 L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l 264 (629)
+++|+++ .++..++. .+|..||++.|++. .++..++++.+|+.|++..|++. .++.++. .-.|..||+++|+|
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~---~LpLi~lDfScNki 223 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC---SLPLIRLDFSCNKI 223 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh---CCceeeeecccCce
Confidence 9999988 67777764 47888999999887 56777888899999999999888 6777765 34688899999999
Q ss_pred cccchHHhhcccCccceecccccccccccccccCCCC---CcEEEecCCc
Q 043930 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH---LLNFTFSNNF 311 (629)
Q Consensus 265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~---L~~L~L~~N~ 311 (629)
. .++-.|.+|..|++|-|.+|-++. -+..+|...+ .++|+..-++
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 8 788889999999999999998885 3444443322 4566666553
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.48 E-value=6.1e-15 Score=144.39 Aligned_cols=209 Identities=16% Similarity=0.178 Sum_probs=135.9
Q ss_pred cccEEEEEcCCC---CccccCchhh-------hCCcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCCCc
Q 043930 83 ERFVAMIDLNKA---EIAAHLPPEM-------GWLLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVGPF 148 (629)
Q Consensus 83 ~~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~ 148 (629)
.+.|+..++++- ++...++..+ ....+|++|||++|.|.-. +.+.+..+..|++|+|.||.+.-..
T Consensus 57 ~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~a 136 (382)
T KOG1909|consen 57 KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEA 136 (382)
T ss_pred cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhH
Confidence 457888888764 2233344333 3445899999999988633 3345677899999999999886322
Q ss_pred hh-------------hhhCCCCCcEEEccCCcCccCCCchh---cc--CCCCEEEecCccccccCchhhhhhhhHHHHhc
Q 043930 149 PT-------------VALTWKRNLYLDLRFNNFEGELPPEL---FQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210 (629)
Q Consensus 149 ~~-------------~l~~l~~L~~L~Ls~n~l~~~ip~~~---~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 210 (629)
-. .+..-.+|++++..+|++.......+ ++ ..|+.+.+..|.|......
T Consensus 137 g~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~------------- 203 (382)
T KOG1909|consen 137 GGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT------------- 203 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhH-------------
Confidence 22 22345689999999999974333322 22 6899999999888743321
Q ss_pred CCcccccCCccccCCCCCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchHHhh-----cccCccce
Q 043930 211 SNNFTGCLPRSIGYMKELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-----NLNNIMRL 281 (629)
Q Consensus 211 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L 281 (629)
.+...|.++++|++|||.+|.|+.. +...+. .+++|++|++++|.+.......|. ...+|++|
T Consensus 204 ------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~--s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl 275 (382)
T KOG1909|consen 204 ------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS--SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVL 275 (382)
T ss_pred ------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc--ccchheeecccccccccccHHHHHHHHhccCCCCcee
Confidence 1223566677888888888877632 222333 456778888888877654433332 24678888
Q ss_pred eccccccccc----ccccccCCCCCcEEEecCCcc
Q 043930 282 DISDNMLTGF----VSADICKLPHLLNFTFSNNFF 312 (629)
Q Consensus 282 ~Ls~N~l~~~----~~~~l~~l~~L~~L~L~~N~l 312 (629)
.|.+|.|+.. +...+.....|+.|+|++|.+
T Consensus 276 ~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 276 ELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8888877643 222334567788888888888
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.4e-14 Score=145.57 Aligned_cols=209 Identities=17% Similarity=0.137 Sum_probs=114.2
Q ss_pred hCCcCCCEEECCCCCCCccCh-hhhcCCCCCcEEEccCCcCCCC--chhhhhCCCCCcEEEccCCcCccCCCchhcc--C
Q 043930 105 GWLLDLIYFHANTNRLCGIIP-ETFANMHRLEEFDVSNNRLVGP--FPTVALTWKRNLYLDLRFNNFEGELPPELFQ--T 179 (629)
Q Consensus 105 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~ 179 (629)
.++++|+++.|.++.+....- .....|.+++.|||+.|-|... +...+..+++|+.|+|+.|++..-+....-. .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456666776776665542211 3455666777777777765432 2334455677777777777765222222211 6
Q ss_pred CCCEEEecCccccccCchhhhh--hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEE
Q 043930 180 GLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF 257 (629)
Q Consensus 180 ~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L 257 (629)
.|+.|.|+.|.|+......+.. .+|+.|+|..|............+..|++|||++|++. ........+.+++|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 6777777777766322222211 35677777777433233334445566777777777765 33322222356777777
Q ss_pred EecCCcccccc-h-----HHhhcccCccceeccccccccc-ccccccCCCCCcEEEecCCccCC
Q 043930 258 DIRSNKFHGSV-P-----QSFANLNNIMRLDISDNMLTGF-VSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 258 ~Ls~n~l~~~~-~-----~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
+++.|.+.+.- + +....+.+|+.|++..|.|.+. ....+..+.+|+.|.+..|.|+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 77777665321 1 1123456677777777776431 11233445566666666666654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.45 E-value=1.5e-15 Score=156.71 Aligned_cols=178 Identities=25% Similarity=0.419 Sum_probs=156.5
Q ss_pred cCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHH
Q 043930 129 ANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYI 207 (629)
Q Consensus 129 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 207 (629)
..+..-...||+.|++.. ++..++.+..|+.|.|+.|.|. .|+..+.. ..|.+|||+.|++. .++..++..-|+.|
T Consensus 72 ~~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvl 148 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVL 148 (722)
T ss_pred ccccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeE
Confidence 456667789999999986 8888999999999999999998 88888877 88999999999998 77888888899999
Q ss_pred HhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccc
Q 043930 208 VLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM 287 (629)
Q Consensus 208 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 287 (629)
.+++|+++ .++..++.+.+|..||.+.|.|. .++..++ ++.+|+.|++..|++. .++..++.| .|..||+++|+
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~--~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk 222 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG--YLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK 222 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh--hHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence 99999998 78888998899999999999998 7888887 7999999999999998 677777755 48999999999
Q ss_pred ccccccccccCCCCCcEEEecCCccCCcc
Q 043930 288 LTGFVSADICKLPHLLNFTFSNNFFQGMA 316 (629)
Q Consensus 288 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 316 (629)
|.. ++..|++|.+|++|-|.+|-|..-.
T Consensus 223 is~-iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 223 ISY-LPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred eee-cchhhhhhhhheeeeeccCCCCCCh
Confidence 985 7888999999999999999887643
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=2.8e-13 Score=144.62 Aligned_cols=194 Identities=27% Similarity=0.413 Sum_probs=148.7
Q ss_pred EEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCC-CCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC
Q 043930 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMH-RLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN 166 (629)
Q Consensus 88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 166 (629)
.|++..+.+...+ ..+..++.++.|++.+|.++. +......+. +|++|++++|.+.. ++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 5777777764332 345566889999999999884 555566664 89999999999886 4456888999999999999
Q ss_pred cCccCCCchh-ccCCCCEEEecCccccccCchhhhhh-hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCc
Q 043930 167 NFEGELPPEL-FQTGLDIIFLNHNWFRGSIPETIGES-LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPS 244 (629)
Q Consensus 167 ~l~~~ip~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 244 (629)
++. .++... ...+|+.|++++|++. .++..++.. .|++|++++|.+. .+...+.++.++..|.+.+|++. .+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 998 777776 4488999999999998 666666444 5999999999644 34456777888888888888887 4345
Q ss_pred ccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930 245 EIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV 292 (629)
Q Consensus 245 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 292 (629)
.+. .+.+|++|++++|.++.... +..+.+|+.|++++|.+....
T Consensus 250 ~~~--~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIG--NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhc--cccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 555 67889999999999884433 788889999999998887543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.38 E-value=4.5e-13 Score=143.04 Aligned_cols=196 Identities=28% Similarity=0.388 Sum_probs=143.9
Q ss_pred EEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCC-CCcEEEccCCcCccCCCchhcc-CCCCEEEecCc
Q 043930 112 YFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWK-RNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHN 189 (629)
Q Consensus 112 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n 189 (629)
.|++..|.+...+ ..+..++.++.|++.+|.++. +......+. +|++|++++|++. .++..+.. .+|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 6788888774322 345666889999999998886 555566664 8999999999987 66545544 88999999999
Q ss_pred cccccCchhh-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930 190 WFRGSIPETI-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268 (629)
Q Consensus 190 ~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~ 268 (629)
.+. .++... ....|+.|++++|++. .++..+..+.+|++|++++|.+. .+...+. .+.+|..|.+.+|++.. +
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~--~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS--NLKNLSGLELSNNKLED-L 247 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh--hcccccccccCCceeee-c
Confidence 888 445444 5567888888888888 45555556667888888888544 3444444 67888888888888773 3
Q ss_pred hHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchh
Q 043930 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME 318 (629)
Q Consensus 269 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 318 (629)
...+..+.+|+.|++++|.+..+.. +..+.+|+.|++++|.+......
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 5667788888888888888886433 77888888888888887765443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.37 E-value=1.4e-13 Score=131.83 Aligned_cols=202 Identities=17% Similarity=0.182 Sum_probs=141.0
Q ss_pred CCCCCcEEEccCC--------cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh
Q 043930 130 NMHRLEEFDVSNN--------RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE 201 (629)
Q Consensus 130 ~l~~L~~L~Ls~n--------~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 201 (629)
-+.+|++|.++.. -+...++..+..+++|+.+.++.+.-.....-.+....|+.|...+..+. ..+..+-.
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe 258 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ-DVPSLLPE 258 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccc-ccccccch
Confidence 3455666665542 22233344455677888888888876522222333478888888777655 22222222
Q ss_pred hhhHHHHhcC-CcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccc
Q 043930 202 SLARYIVLSS-NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMR 280 (629)
Q Consensus 202 ~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 280 (629)
..+..+.... ....|.....+..+..|++|||++|.|+ ++.+++. -+..++.|++++|.|+ .+ +.+..|.+|+.
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK--L~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~ 333 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK--LAPKLRRLILSQNRIR-TV-QNLAELPQLQL 333 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh--hccceeEEecccccee-ee-hhhhhcccceE
Confidence 2332222222 2234444455666789999999999998 7777776 6799999999999998 33 34889999999
Q ss_pred eecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930 281 LDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 281 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
|||++|.++.+ ..+-.++.++++|.|++|.|.+. ..+.++-+|.+||+++|+|..++
T Consensus 334 LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ld 390 (490)
T KOG1259|consen 334 LDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELD 390 (490)
T ss_pred eecccchhHhh-hhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHH
Confidence 99999999864 44556789999999999998754 46777888999999999998765
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.6e-14 Score=140.73 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=153.3
Q ss_pred cCCCCCcEEEccCCcCCCCch-hhhhCCCCCcEEEccCCcCccCCCchh--cc--CCCCEEEecCccccccCchhhhh--
Q 043930 129 ANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNFEGELPPEL--FQ--TGLDIIFLNHNWFRGSIPETIGE-- 201 (629)
Q Consensus 129 ~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ip~~~--~~--~~L~~L~L~~n~l~~~~~~~~~~-- 201 (629)
.++++|++..|+++.+..... .....|.+++.|||++|-|. .+-..+ .. .+|+.|+|+.|++..........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 568899999999998875332 45778999999999999887 332222 11 89999999999987444333322
Q ss_pred hhhHHHHhcCCccccc-CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc-hHHhhcccCcc
Q 043930 202 SLARYIVLSSNNFTGC-LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV-PQSFANLNNIM 279 (629)
Q Consensus 202 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 279 (629)
..|+.|.|+.|+|+.. +...+..+++|++|+|.+|...+. .......+..|++|||++|++.+.. ...++.|+.|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~--~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI--KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce--ecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 5789999999999732 344456679999999999963222 2222225788999999999887432 23467889999
Q ss_pred ceeccccccccccccc------ccCCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccc
Q 043930 280 RLDISDNMLTGFVSAD------ICKLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 280 ~L~Ls~N~l~~~~~~~------l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
.|+++.|.|..+-... ...+.+|++|++..|++.++. .+.+..+.+|+.|.+.+|.|...
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 9999999987642222 245689999999999997653 35667788899999999988744
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.32 E-value=2.5e-13 Score=145.51 Aligned_cols=241 Identities=19% Similarity=0.190 Sum_probs=139.2
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
..+..+++..|.|.. +-..+..+++|++|++.+|+|..+ ...+..+.+|++|+|++|.|+.. ..+..+..|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 344555566665543 223456667777777777777643 22256677777777777777653 33555566777777
Q ss_pred cCCcCccCCCchhccCCCCEEEecCccccccCch-hhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930 164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPE-TIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242 (629)
Q Consensus 164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 242 (629)
++|.|. .+...-...+|+.|++++|++...-.. .-....++.+++.+|.+... ..+..+..+..+++.+|.+.. +
T Consensus 148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~-~ 223 (414)
T KOG0531|consen 148 SGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK-L 223 (414)
T ss_pred ccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee-c
Confidence 777776 444333346677777777776633221 12335677777777776532 233444555555777777662 1
Q ss_pred CcccccCCCCC--CcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc---ch
Q 043930 243 PSEIGSGEYKN--LTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM---AM 317 (629)
Q Consensus 243 p~~~~~~~l~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~---~~ 317 (629)
-.. . .+.. |+.|++++|.+.. +...+..+.++..|++.+|++... ..+.....+..+.+.+|.+... ..
T Consensus 224 ~~l-~--~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 224 EGL-N--ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred cCc-c--cchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 111 1 1222 6777777777762 224556667777777777777653 3344555666666666665532 11
Q ss_pred h-hhcCCCCCceecccCCcccc
Q 043930 318 E-CISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 318 ~-~l~~l~~L~~L~l~~N~l~~ 338 (629)
. .......++.+.+.+|.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccccccccccccccccCcccc
Confidence 1 14445666777777776654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=6e-12 Score=116.21 Aligned_cols=129 Identities=18% Similarity=0.253 Sum_probs=53.1
Q ss_pred chhhhhhhhHHHHhcCCcccccCCcccc-CCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHh-h
Q 043930 196 PETIGESLARYIVLSSNNFTGCLPRSIG-YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF-A 273 (629)
Q Consensus 196 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~ 273 (629)
........+++|+|.+|.|... +.++ .+.+|++|||++|.|+ .+. .+. .+.+|++|+|++|+|+.. ...+ .
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~--~L~~L~~L~L~~N~I~~i-~~~l~~ 85 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLP--GLPRLKTLDLSNNRISSI-SEGLDK 85 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S---T-T------TT--EEE--SS---S--CHHHHH
T ss_pred cccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-Ccc--ChhhhhhcccCCCCCCcc-ccchHH
Confidence 3333445677788888877743 3455 5789999999999998 443 344 689999999999999954 3344 4
Q ss_pred cccCccceeccccccccccc-ccccCCCCCcEEEecCCccCCcc---hhhhcCCCCCceecc
Q 043930 274 NLNNIMRLDISDNMLTGFVS-ADICKLPHLLNFTFSNNFFQGMA---MECISGSRDDVYFEE 331 (629)
Q Consensus 274 ~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~---~~~l~~l~~L~~L~l 331 (629)
.+++|++|+|++|+|.+... ..+..+++|+.|+|.+|.++... ...+..+++|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 68999999999999976422 45678999999999999887542 345677899999984
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.25 E-value=4.7e-13 Score=143.38 Aligned_cols=238 Identities=19% Similarity=0.149 Sum_probs=149.8
Q ss_pred cEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEcc
Q 043930 85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLR 164 (629)
Q Consensus 85 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 164 (629)
.++.++...+.+...--. ...+..++.|++..|.|.. +...+..+.+|++|++.+|.|... ...+..+.+|++|+|+
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence 345555555544332111 2456777778888888874 345578889999999999999873 2226778999999999
Q ss_pred CCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCC-ccccCCCCCcEEEccCCcccccCC
Q 043930 165 FNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLP-RSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 165 ~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
+|+|+ .+...-....|+.|++.+|.|.. +...-....|+.+++++|++...-. . +..+.+|+.+++++|.+. .+.
T Consensus 127 ~N~I~-~i~~l~~l~~L~~L~l~~N~i~~-~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~ 202 (414)
T KOG0531|consen 127 FNKIT-KLEGLSTLTLLKELNLSGNLISD-ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE 202 (414)
T ss_pred ccccc-cccchhhccchhhheeccCcchh-ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc
Confidence 99997 44444344668888888888773 2222224567777777777764422 1 456677777777777776 221
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccC--ccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhc
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN--IMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECIS 321 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 321 (629)
.+. .+..+..+++..|.++... .+..+.. |+.|++++|.+... ...+..+..++.|++.+|++... ..+.
T Consensus 203 -~~~--~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~ 274 (414)
T KOG0531|consen 203 -GLD--LLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLE 274 (414)
T ss_pred -chH--HHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--cccc
Confidence 122 3455556677777776221 1222232 77788888877743 24566677777788877777654 2344
Q ss_pred CCCCCceecccCCccc
Q 043930 322 GSRDDVYFEEKGNCLA 337 (629)
Q Consensus 322 ~l~~L~~L~l~~N~l~ 337 (629)
....+..+.+..|.+.
T Consensus 275 ~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 275 RLPKLSELWLNDNKLA 290 (414)
T ss_pred ccchHHHhccCcchhc
Confidence 4555666666666655
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.23 E-value=1.2e-12 Score=123.96 Aligned_cols=238 Identities=17% Similarity=0.201 Sum_probs=133.3
Q ss_pred cccEEEEEcCCCCccccCch----hhhCCcCCCEEECCCCCC---Ccc-------ChhhhcCCCCCcEEEccCCcCCCCc
Q 043930 83 ERFVAMIDLNKAEIAAHLPP----EMGWLLDLIYFHANTNRL---CGI-------IPETFANMHRLEEFDVSNNRLVGPF 148 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l---~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~ 148 (629)
...++.+||++|.|...-.. .|.+-++|+..++++-.. .+. +-.++.+|.+|+..+|++|.|....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 34577777777777554333 334456666666665321 111 1223455666777777777665443
Q ss_pred hh----hhhCCCCCcEEEccCCcCcc----CCCchhcc----------CCCCEEEecCccccccCchhhhhhhhHHHHhc
Q 043930 149 PT----VALTWKRNLYLDLRFNNFEG----ELPPELFQ----------TGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210 (629)
Q Consensus 149 ~~----~l~~l~~L~~L~Ls~n~l~~----~ip~~~~~----------~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 210 (629)
+. .+.+.+.|++|.|++|.+.- .|...+|. ..|+++++..|++... +...
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng-s~~~----------- 176 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG-SKEL----------- 176 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC-cHHH-----------
Confidence 33 33445666666666666531 11111111 3455555555554411 1000
Q ss_pred CCcccccCCccccCCCCCcEEEccCCcccccCCc---ccccCCCCCCcEEEecCCccccc----chHHhhcccCccceec
Q 043930 211 SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPS---EIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDI 283 (629)
Q Consensus 211 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L 283 (629)
....|..-.+|+++.|..|.|.-..-. ..+...+.+|++|||.+|-|+.. +...++.+..|+.|.|
T Consensus 177 -------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 177 -------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred -------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 001122225788888888887632111 11112567888888888887632 3455667788889999
Q ss_pred cccccccccccccc------CCCCCcEEEecCCccCCcchhh------h-cCCCCCceecccCCccccc
Q 043930 284 SDNMLTGFVSADIC------KLPHLLNFTFSNNFFQGMAMEC------I-SGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 284 s~N~l~~~~~~~l~------~l~~L~~L~L~~N~l~~~~~~~------l-~~l~~L~~L~l~~N~l~~~ 339 (629)
.+|.++......+. ...+|..|.+.+|.+.+..... . ..+.-|..|.+.||+|...
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 88888765444331 2577888888888765432211 1 1456778888888988753
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.21 E-value=2.4e-13 Score=143.99 Aligned_cols=179 Identities=18% Similarity=0.227 Sum_probs=97.9
Q ss_pred hhhhcCCCCCcEEEccCCcCCCCchhhhhCC-CCCcEEEccCCcCc----------cCCCchhccCCCCEEEecCccccc
Q 043930 125 PETFANMHRLEEFDVSNNRLVGPFPTVALTW-KRNLYLDLRFNNFE----------GELPPELFQTGLDIIFLNHNWFRG 193 (629)
Q Consensus 125 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~----------~~ip~~~~~~~L~~L~L~~n~l~~ 193 (629)
+-.+..+..|+.|.|+++.|.. ...+..+ ..|++|-. .|.+. |.+....-=..|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 4456677888888888887753 1112111 22333322 12111 11111111145666777777766
Q ss_pred cCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHh
Q 043930 194 SIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF 272 (629)
Q Consensus 194 ~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 272 (629)
.+...+.. ..|+.|+|++|++..+ +.+..|.+|++|||++|.+. .++.. +...++ |+.|+|++|.++.. ..+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l-~~~gc~-L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQL-SMVGCK-LQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-ccccc-chhhhh-heeeeecccHHHhh--hhH
Confidence 33333333 3577777777777654 26666777777777777776 33322 111233 77777777777632 346
Q ss_pred hcccCccceeccccccccccc-ccccCCCCCcEEEecCCccCC
Q 043930 273 ANLNNIMRLDISDNMLTGFVS-ADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 273 ~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~ 314 (629)
.+|.+|+.|||++|-|.+.-. .-+..|..|+.|+|.||-|..
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 677777777777776664311 123345566777777776543
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2e-12 Score=123.93 Aligned_cols=227 Identities=16% Similarity=0.158 Sum_probs=145.3
Q ss_pred cccEEEEEcCCCCccccCchhhhCC--cCCCEEECCCCCCCcc-ChhhhcCC-CCCcEEEccCCcCCCC-chhhhhCCCC
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWL--LDLIYFHANTNRLCGI-IPETFANM-HRLEEFDVSNNRLVGP-FPTVALTWKR 157 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~-~~~~~~~l-~~L~~L~Ls~n~l~~~-~~~~l~~l~~ 157 (629)
....+.||+.+-.|.- ..++.+ +.+..+.+....+... +.+.+.-+ .+|++|||++..|+.. +-..+..|.+
T Consensus 135 e~lW~~lDl~~r~i~p---~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 135 ESLWQTLDLTGRNIHP---DVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSK 211 (419)
T ss_pred ccceeeeccCCCccCh---hHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHh
Confidence 4567889998877743 334433 3445555554433322 22333333 3699999999888742 3344677899
Q ss_pred CcEEEccCCcCccCCCchhcc-CCCCEEEecCcc-ccccCchhhhh--hhhHHHHhcCCcccccCC-ccccCC-CCCcEE
Q 043930 158 NLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNW-FRGSIPETIGE--SLARYIVLSSNNFTGCLP-RSIGYM-KELQEI 231 (629)
Q Consensus 158 L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~-l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~-~~l~~l-~~L~~L 231 (629)
|+.|.|.++++.+.|...+.. .+|+.|+|+.+. |+......+.. ..|++|+|++|.+....- ..+.+. .+|+.|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL 291 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence 999999999998877777776 889999998763 44222222222 468888888887764422 112222 578888
Q ss_pred EccCCccc--ccCCcccccCCCCCCcEEEecCC-cccccchHHhhcccCccceecccccccccccc---cccCCCCCcEE
Q 043930 232 ILMENQLS--GCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANLNNIMRLDISDNMLTGFVSA---DICKLPHLLNF 305 (629)
Q Consensus 232 ~Ls~n~l~--~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~L~~L 305 (629)
+|+|++-. ...-..+. ..+.+|.+|||++| .|+......|.++..|++|.|+.|... +++ .|...+.|.+|
T Consensus 292 NlsG~rrnl~~sh~~tL~-~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHLSTLV-RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhHhhhhhhHHHHHH-HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEE
Confidence 88876421 11111222 26788999999887 456556667788888999999888643 333 34566888999
Q ss_pred EecCCccCCc
Q 043930 306 TFSNNFFQGM 315 (629)
Q Consensus 306 ~L~~N~l~~~ 315 (629)
|+.++.-++.
T Consensus 369 dv~g~vsdt~ 378 (419)
T KOG2120|consen 369 DVFGCVSDTT 378 (419)
T ss_pred EeccccCchH
Confidence 9888755543
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=2.5e-11 Score=112.09 Aligned_cols=113 Identities=24% Similarity=0.360 Sum_probs=45.9
Q ss_pred ccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccc-cCCC
Q 043930 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI-CKLP 300 (629)
Q Consensus 222 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~l~ 300 (629)
+.+..++++|+|.+|.|. .+. .++. .+.+|+.|||++|.|+.. +.|..+.+|++|+|++|+|+++. +.+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~-~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGA-TLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLP 88 (175)
T ss_dssp -----------------------S--T-T-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-T
T ss_pred cccccccccccccccccc-ccc-chhh-hhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccc-cchHHhCC
Confidence 345567899999999998 443 4431 478999999999999843 36888999999999999999753 334 4689
Q ss_pred CCcEEEecCCccCCcch-hhhcCCCCCceecccCCcccccc
Q 043930 301 HLLNFTFSNNFFQGMAM-ECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 301 ~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
+|++|+|++|+|.++.. ..+..+++|++|+|.+|.+++..
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 99999999999987643 67888999999999999998543
No 41
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=1.6e-10 Score=129.42 Aligned_cols=108 Identities=20% Similarity=0.392 Sum_probs=93.5
Q ss_pred CcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEe
Q 043930 228 LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTF 307 (629)
Q Consensus 228 L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 307 (629)
++.|+|++|.+.|.++..+. .+.+|++|+|++|+|++.++..+..+.+|+.|+|++|.|.+.+++.++++.+|+.|+|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 77899999999988988887 7899999999999999889988999999999999999999888988999999999999
Q ss_pred cCCccCCcchhhhcCC-CCCceecccCCccc
Q 043930 308 SNNFFQGMAMECISGS-RDDVYFEEKGNCLA 337 (629)
Q Consensus 308 ~~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~ 337 (629)
++|.|.+.++..+..+ .++..+++.+|...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 9999998888777653 45667788877643
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.1e-12 Score=121.22 Aligned_cols=183 Identities=15% Similarity=0.087 Sum_probs=120.9
Q ss_pred cccEEEEEcCCCCcccc-CchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-CCCC-chhhhhCCCCCc
Q 043930 83 ERFVAMIDLNKAEIAAH-LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-LVGP-FPTVALTWKRNL 159 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~ 159 (629)
..+|++|||++..|+.. +-..+..+.+|+.|.|.++++.+.+...+++..+|+.|+|+.+. |+.. +.-.+.+|+.|.
T Consensus 184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35689999999888643 33446778899999999999998888999999999999999864 4321 233467899999
Q ss_pred EEEccCCcCccCCCchhcc---CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCC
Q 043930 160 YLDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMEN 236 (629)
Q Consensus 160 ~L~Ls~n~l~~~ip~~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 236 (629)
+|+|++|.+.......+.. .+|+.|+|+++.-. ++...+.. ....+.+|.+|||++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn------l~~sh~~t--------------L~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN------LQKSHLST--------------LVRRCPNLVHLDLSDS 323 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh------hhhhHHHH--------------HHHhCCceeeeccccc
Confidence 9999999876544222222 66777777765422 11111111 1245677888888776
Q ss_pred c-ccccCCcccccCCCCCCcEEEecCCcccccchHH---hhcccCccceeccccccc
Q 043930 237 Q-LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQS---FANLNNIMRLDISDNMLT 289 (629)
Q Consensus 237 ~-l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~ 289 (629)
. ++......|. ++..|++|.|+.|.. ++++. |...+.|.+||+-++-=.
T Consensus 324 v~l~~~~~~~~~--kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 324 VMLKNDCFQEFF--KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred cccCchHHHHHH--hcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 5 3333333444 577788888888754 33433 344567788887766443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=3e-10 Score=130.14 Aligned_cols=254 Identities=15% Similarity=0.182 Sum_probs=158.1
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
.+..|+.|||++|.-.+.+|..|+.|-+|++|+|++..+. .++..|.+|+.|.+|++.++.....++..+..+.+|++|
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 4677999999998777889999999999999999999998 688899999999999999887766666777779999999
Q ss_pred EccCCcCc--cCCCchhcc-CCCCEEEecCccccccCchhhhhhh----hHHHHhcCCcccccCCccccCCCCCcEEEcc
Q 043930 162 DLRFNNFE--GELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESL----ARYIVLSSNNFTGCLPRSIGYMKELQEIILM 234 (629)
Q Consensus 162 ~Ls~n~l~--~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 234 (629)
.|...... ...-.++.. .+|+.|.+..... ..+-...+... .+.+.+.++... .....+..+.+|+.|.+.
T Consensus 648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~ 725 (889)
T KOG4658|consen 648 RLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSIL 725 (889)
T ss_pred EeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEE
Confidence 98776522 111111211 4555555543332 01111122222 334444333332 344567788999999999
Q ss_pred CCcccccCCcccccC---C-CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCC
Q 043930 235 ENQLSGCLPSEIGSG---E-YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310 (629)
Q Consensus 235 ~n~l~~~~p~~~~~~---~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 310 (629)
++.+........... . +.+|..+.+.++..- ....+..-..+|+.|+|.++.....+......+..++.+.+..+
T Consensus 726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~ 804 (889)
T KOG4658|consen 726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN 804 (889)
T ss_pred cCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence 988863322221100 0 112222222222211 12233345578888888888766555555666677777777777
Q ss_pred ccCCc-chhhhcCCCCCceecccCCccccc
Q 043930 311 FFQGM-AMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 311 ~l~~~-~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
.+.+. ......+++++..+.+.+=++.+.
T Consensus 805 ~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~ 834 (889)
T KOG4658|consen 805 KLEGLRMLCSLGGLPQLYWLPLSFLKLEEL 834 (889)
T ss_pred ccccceeeecCCCCceeEecccCccchhhe
Confidence 77766 345556666666666665554433
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.02 E-value=5e-10 Score=106.41 Aligned_cols=244 Identities=15% Similarity=0.126 Sum_probs=146.3
Q ss_pred chhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCC---c
Q 043930 20 DFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAE---I 96 (629)
Q Consensus 20 ~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~---l 96 (629)
.+..+..+++++|++|.+.... ...+.+.+.. .++|+..++++.- .
T Consensus 25 el~~~d~~~evdLSGNtigtEA--~e~l~~~ia~-----------------------------~~~L~vvnfsd~ftgr~ 73 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEA--MEELCNVIAN-----------------------------VRNLRVVNFSDAFTGRD 73 (388)
T ss_pred HHHhhcceeEEeccCCcccHHH--HHHHHHHHhh-----------------------------hcceeEeehhhhhhccc
Confidence 4556788899999999987653 3333333321 1234444444321 1
Q ss_pred ccc-------CchhhhCCcCCCEEECCCCCCCccC----hhhhcCCCCCcEEEccCCcCCCC----chhh---------h
Q 043930 97 AAH-------LPPEMGWLLDLIYFHANTNRLCGII----PETFANMHRLEEFDVSNNRLVGP----FPTV---------A 152 (629)
Q Consensus 97 ~~~-------~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~---------l 152 (629)
.+. +-.++.++.+|+.++|++|.|.... -+.++.-+.|++|.|+||.+.-+ +..+ .
T Consensus 74 kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKa 153 (388)
T COG5238 74 KDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKA 153 (388)
T ss_pred HHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhh
Confidence 111 2234556778888888888876443 34456677888888888877532 1111 1
Q ss_pred hCCCCCcEEEccCCcCccCCCchhc----c--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCC
Q 043930 153 LTWKRNLYLDLRFNNFEGELPPELF----Q--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMK 226 (629)
Q Consensus 153 ~~l~~L~~L~Ls~n~l~~~ip~~~~----~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 226 (629)
.+-+.|+.+++..|++. ....... . .+|+++.+..|.|.-.....+ -. ..+..+.
T Consensus 154 a~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L-----~~-------------~gl~y~~ 214 (388)
T COG5238 154 ADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTML-----AF-------------LGLFYSH 214 (388)
T ss_pred ccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHH-----HH-------------HHHHHhC
Confidence 23467899999999987 4433322 1 578888898888874322111 11 1234457
Q ss_pred CCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchHHh----h--cccCccceeccccccccccccc-
Q 043930 227 ELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSF----A--NLNNIMRLDISDNMLTGFVSAD- 295 (629)
Q Consensus 227 ~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~--~l~~L~~L~Ls~N~l~~~~~~~- 295 (629)
+|++|||.+|.|+.. +...+. ....|++|.+.+|-+.......+ . ...+|..|.+.+|.+.+.+-..
T Consensus 215 ~LevLDlqDNtft~~gS~~La~al~--~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~ 292 (388)
T COG5238 215 SLEVLDLQDNTFTLEGSRYLADALC--EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI 292 (388)
T ss_pred cceeeeccccchhhhhHHHHHHHhc--ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence 888888888887622 112222 33458888888887765433322 2 2467888888888766532222
Q ss_pred ----c--cCCCCCcEEEecCCccCCc
Q 043930 296 ----I--CKLPHLLNFTFSNNFFQGM 315 (629)
Q Consensus 296 ----l--~~l~~L~~L~L~~N~l~~~ 315 (629)
+ .+++-|..|.+.+|+|...
T Consensus 293 ~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 293 SLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred chhhhhhcccHHHHHHHHccCcchhH
Confidence 1 2356677778888887643
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.97 E-value=2.6e-11 Score=128.86 Aligned_cols=181 Identities=18% Similarity=0.194 Sum_probs=95.2
Q ss_pred hhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCcc---------ccccCchhhhhhhhHHHHhcCCcccccCC
Q 043930 150 TVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNW---------FRGSIPETIGESLARYIVLSSNNFTGCLP 219 (629)
Q Consensus 150 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~---------l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 219 (629)
..|..+.+|++|.|.++.|. .+-..... ..|++|...+.- -.|.+...+....|...++++|.+. .+.
T Consensus 103 i~ifpF~sLr~LElrg~~L~-~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD 180 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLS-TAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMD 180 (1096)
T ss_pred ceeccccceeeEEecCcchh-hhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHH
Confidence 34555666666666666664 21111111 445554433221 1123333333345666666666665 344
Q ss_pred ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchH-HhhcccCccceecccccccccccccccC
Q 043930 220 RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ-SFANLNNIMRLDISDNMLTGFVSADICK 298 (629)
Q Consensus 220 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 298 (629)
.++.-+..|+.|||++|+++..- .+. .|..|++|||++|.|+ .++. ...++. |..|.|+||.++.. ..+.+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 55555666666666666666322 333 5666666666666665 2221 222232 66666666666542 34556
Q ss_pred CCCCcEEEecCCccCCcch-hhhcCCCCCceecccCCcccccc
Q 043930 299 LPHLLNFTFSNNFFQGMAM-ECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 299 l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
|.+|+.|||++|.|.+... ..+..+..|+.|+|.||.+.+..
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 6666666666666655432 33444556666666666665544
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=9.8e-10 Score=125.92 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=136.0
Q ss_pred ccEEEEEcCCCC--ccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 84 RFVAMIDLNKAE--IAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 84 ~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
..|+.|-+.+|. +..+....|..++.|++|||++|.-.+.++..+++|-+|++|+|++..+.. ++..+.+++.|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhhee
Confidence 346666666665 444344456677788888888776666777778888888888888877774 77777888888888
Q ss_pred EccCCcCccCCCchhc-cCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc-CCccccCCCCCc----EEEcc
Q 043930 162 DLRFNNFEGELPPELF-QTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC-LPRSIGYMKELQ----EIILM 234 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~-~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~-~~~~l~~l~~L~----~L~Ls 234 (629)
|+..+.....++..+. ..+|++|.|......... ..++. ..|+.|..-.+.+... +-..+..+..|. .+.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~-~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK-LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccch-hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 8877765544433333 277777777655422111 11111 1222222222211111 111122222222 33332
Q ss_pred CCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhc------ccCccceecccccccccccccccCCCCCcEEEec
Q 043930 235 ENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFAN------LNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS 308 (629)
Q Consensus 235 ~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 308 (629)
++... .....+. .+.+|+.|.+.++.+......++.. +.+|..+.+.++..... ..+..-..+|+.|++.
T Consensus 703 ~~~~~-~~~~~~~--~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 703 GCSKR-TLISSLG--SLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSLSLV 778 (889)
T ss_pred ccccc-eeecccc--cccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-cchhhccCcccEEEEe
Confidence 33322 2333444 6888999999998886433333222 22334444444432221 2223346899999999
Q ss_pred CCccCCcchhhhcCCCCCceecccCCccc
Q 043930 309 NNFFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 309 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
++............+..++.+-+..+.+.
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred cccccccCCCHHHHhhhcccEEecccccc
Confidence 98876666555555555555444444443
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.1e-09 Score=80.71 Aligned_cols=60 Identities=38% Similarity=0.570 Sum_probs=32.0
Q ss_pred CCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCcc
Q 043930 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF 312 (629)
Q Consensus 253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 312 (629)
+|++|+|++|+|+......|.++.+|++|+|++|.|+.+....|.++.+|++|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 355555555555544344555555555555555555554444555555555555555543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.8e-09 Score=102.69 Aligned_cols=216 Identities=16% Similarity=0.200 Sum_probs=132.3
Q ss_pred ccEEEEEcCCCCccccCc-hhh-hCCcCCCEEECCCCCCCcc--ChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCc
Q 043930 84 RFVAMIDLNKAEIAAHLP-PEM-GWLLDLIYFHANTNRLCGI--IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNL 159 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p-~~~-~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 159 (629)
+.++.|.+.++.|..+.- ..| ...+++++|||.+|.|++. +...+.+|..|+.|+|+.|.+...|-..-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 446667777777654322 122 3467888889999888753 445567888899999998888765443324667888
Q ss_pred EEEccCCcCccCCCchhcc--CCCCEEEecCccccccC--chhhhh--hh---------hHHHHhcCCcccccCCccccC
Q 043930 160 YLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSI--PETIGE--SL---------ARYIVLSSNNFTGCLPRSIGY 224 (629)
Q Consensus 160 ~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~--~~~~~~--~~---------L~~L~l~~n~l~~~~~~~l~~ 224 (629)
.|-|.+..+.-.--..+.. ..+++|.++.|.+.... ...+.. .. +..++++-|++. ..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-------r~ 197 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-------RI 197 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-------hh
Confidence 8888887764211111111 45566666666332110 011111 12 333444444444 23
Q ss_pred CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc-chHHhhcccCccceecccccccccccc------ccc
Q 043930 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS-VPQSFANLNNIMRLDISDNMLTGFVSA------DIC 297 (629)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~------~l~ 297 (629)
+.++..+.+.+|-|... -..-++..+..+..|+|+.|+|.+. -.+.+.+++.|+.|.+++|-|.+.+.. .++
T Consensus 198 Fpnv~sv~v~e~PlK~~-s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTE-SSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred cccchheeeecCcccch-hhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 46888888888877632 2222223567788999999999753 235677889999999999988653221 246
Q ss_pred CCCCCcEEEe
Q 043930 298 KLPHLLNFTF 307 (629)
Q Consensus 298 ~l~~L~~L~L 307 (629)
++.+++.|+=
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 6788887763
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.6e-09 Score=79.75 Aligned_cols=61 Identities=28% Similarity=0.402 Sum_probs=57.4
Q ss_pred cCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 276 NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 276 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
++|++|+|++|+|+.+....|.++.+|++|+|++|.|..+..+.|.++.+|++|++++|.|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4799999999999988778899999999999999999999999999999999999999976
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=2.7e-09 Score=102.77 Aligned_cols=231 Identities=12% Similarity=0.111 Sum_probs=136.5
Q ss_pred hCCcCCCEEECCCCCCCccCh-hhh-cCCCCCcEEEccCCcCCC--CchhhhhCCCCCcEEEccCCcCccCCCchh-ccC
Q 043930 105 GWLLDLIYFHANTNRLCGIIP-ETF-ANMHRLEEFDVSNNRLVG--PFPTVALTWKRNLYLDLRFNNFEGELPPEL-FQT 179 (629)
Q Consensus 105 ~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~-~~~ 179 (629)
..++.|+.|.+.++.|..+-. ..| ...+.+++|||.+|.|.+ .+...+.++..|++|+|+.|.+...|...- -..
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 334456677788887764311 223 346789999999999974 344556789999999999999986665553 338
Q ss_pred CCCEEEecCccccccCchhhhh--hhhHHHHhcCCccccc--CCccccCC-CCCcEEEccCCcccccCC-cccccCCCCC
Q 043930 180 GLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGC--LPRSIGYM-KELQEIILMENQLSGCLP-SEIGSGEYKN 253 (629)
Q Consensus 180 ~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~--~~~~l~~l-~~L~~L~Ls~n~l~~~~p-~~~~~~~l~~ 253 (629)
+|+.|.|++..+.......+.. ..+++|.++.|++... ..+..... +.++.|++..|.+..-.- ..++ ....+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~-r~Fpn 200 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS-RIFPN 200 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-hhccc
Confidence 9999999998876433222222 3566777777743211 01111111 245555555554320000 0000 02456
Q ss_pred CcEEEecCCcccccc-hHHhhcccCccceecccccccccc-cccccCCCCCcEEEecCCccCCcch------hhhcCCCC
Q 043930 254 LTVFDIRSNKFHGSV-PQSFANLNNIMRLDISDNMLTGFV-SADICKLPHLLNFTFSNNFFQGMAM------ECISGSRD 325 (629)
Q Consensus 254 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~------~~l~~l~~ 325 (629)
+..+-+..|-|.... ...+..++.+-.|+|+.|+|..-. .+.+.+++.|..|.+.+|-|.+... -.|..+.+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 777777777665321 233455666777888888876421 2346677788888888887655432 23445566
Q ss_pred CceecccCCcccc
Q 043930 326 DVYFEEKGNCLAE 338 (629)
Q Consensus 326 L~~L~l~~N~l~~ 338 (629)
++.|+ |..|..
T Consensus 281 v~vLN--GskIss 291 (418)
T KOG2982|consen 281 VQVLN--GSKISS 291 (418)
T ss_pred eEEec--Ccccch
Confidence 66665 335553
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=1.9e-09 Score=108.44 Aligned_cols=251 Identities=16% Similarity=0.084 Sum_probs=130.4
Q ss_pred ccEEEEEcCCCCcccc--CchhhhCCcCCCEEECCCCC-CCccChhhh-cCCCCCcEEEccCC-cCCCCchh-hhhCCCC
Q 043930 84 RFVAMIDLNKAEIAAH--LPPEMGWLLDLIYFHANTNR-LCGIIPETF-ANMHRLEEFDVSNN-RLVGPFPT-VALTWKR 157 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~-~l~~l~~ 157 (629)
.+|+.|.|.++.-.+. +-....++.++++|+|.++. |++..-..+ ..+.+|++|+|..| .|+...-. ....+.+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 5677777777654433 11223456677777777663 333222222 24566777777763 33332222 3345667
Q ss_pred CcEEEccCCc-CccCCCchhcc--CC--------------------------CCEEEecCcc-ccccCchhh--hhhhhH
Q 043930 158 NLYLDLRFNN-FEGELPPELFQ--TG--------------------------LDIIFLNHNW-FRGSIPETI--GESLAR 205 (629)
Q Consensus 158 L~~L~Ls~n~-l~~~ip~~~~~--~~--------------------------L~~L~L~~n~-l~~~~~~~~--~~~~L~ 205 (629)
|++|+|+++. |++..-..++. ++ +..|++.+|. +++..-..+ +...|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 7777777653 22211111111 22 3333333332 221110011 113466
Q ss_pred HHHhcCCccc-cc-CCccccCCCCCcEEEccCCc-ccccCCcccccCCCCCCcEEEecCCccc--ccchHHhhcccCccc
Q 043930 206 YIVLSSNNFT-GC-LPRSIGYMKELQEIILMENQ-LSGCLPSEIGSGEYKNLTVFDIRSNKFH--GSVPQSFANLNNIMR 280 (629)
Q Consensus 206 ~L~l~~n~l~-~~-~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~ 280 (629)
+|+.+++... +. +.....+..+|++|-|.+++ |++.....++. ++..|+.|++..+.+. +.+...-.++..|++
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 6666654432 22 11222345677777777765 33333334443 5667788887777543 112222235677888
Q ss_pred eecccccccccc-----cccccCCCCCcEEEecCCcc-CCcchhhhcCCCCCceecccCCc
Q 043930 281 LDISDNMLTGFV-----SADICKLPHLLNFTFSNNFF-QGMAMECISGSRDDVYFEEKGNC 335 (629)
Q Consensus 281 L~Ls~N~l~~~~-----~~~l~~l~~L~~L~L~~N~l-~~~~~~~l~~l~~L~~L~l~~N~ 335 (629)
|.|++|.+.... ...-+.+..|+.|.|+++.+ ++...+.+..+..|+.+++.+..
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 888888643221 22234567888888888864 44556777788888888876643
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.52 E-value=7.8e-09 Score=88.63 Aligned_cols=107 Identities=20% Similarity=0.199 Sum_probs=59.8
Q ss_pred CCCCEEEecCccccccCchhhhh--hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930 179 TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV 256 (629)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~ 256 (629)
..|+.++|++|.|. .++..|.. ..++.|+|++|.|. .++..|..|+.|+.|++++|.|. ..+..+. .|.+|..
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~--~L~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIA--PLIKLDM 127 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHH--HHHhHHH
Confidence 34444555555554 33333322 24566666666666 45666777777777777777776 5555555 5677777
Q ss_pred EEecCCcccccchHHhhcccCccceeccccccccc
Q 043930 257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF 291 (629)
Q Consensus 257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 291 (629)
||..+|.+..+..+ +..-.++-.+++.++.+.+.
T Consensus 128 Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 128 LDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred hcCCCCccccCcHH-HhccccHHHHHhcCCccccc
Confidence 77777766633222 22223333444455555543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.47 E-value=3.6e-08 Score=84.60 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=71.4
Q ss_pred EEEEEcCCCCccccCchh---hhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 86 VAMIDLNKAEIAAHLPPE---MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 86 L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+..+||++|.|.. +.+. +.+..+|+..+|++|.|...-...-..+..++.|+|++|.|.. ++..+..|..|+.|+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence 4456666665532 2332 3344556666777777664332322344467777777777765 556677777777777
Q ss_pred ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc
Q 043930 163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC 217 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~ 217 (629)
+++|.|. ..+..++. .+|..|+..+|.+. .++..+.. ...-.++++++.+.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~ 161 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDE 161 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccccc
Confidence 7777776 55555554 56666666666655 33333322 3334445555555543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.40 E-value=1.4e-07 Score=105.78 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCCCCcEEEecCCcccccchHHhhcccCccceecccccccc-cccccccCCCCCcEEEecCCccCCcc------hhhhcC
Q 043930 250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG-FVSADICKLPHLLNFTFSNNFFQGMA------MECISG 322 (629)
Q Consensus 250 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~------~~~l~~ 322 (629)
++.+|..||+++.+++.. ..+++|++|++|.+.+=.+.. .....+.+|++|+.||++........ .++-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 344555555555555422 344455555555554443332 12223444555555555544322211 122223
Q ss_pred CCCCceecccCCcccc
Q 043930 323 SRDDVYFEEKGNCLAE 338 (629)
Q Consensus 323 l~~L~~L~l~~N~l~~ 338 (629)
+++|+.||.+|+.+.+
T Consensus 249 LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINE 264 (699)
T ss_pred CccccEEecCCcchhH
Confidence 4555555555554443
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.36 E-value=1.5e-07 Score=105.48 Aligned_cols=137 Identities=20% Similarity=0.196 Sum_probs=69.6
Q ss_pred CCCcEEEccCCcCc-cCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEE
Q 043930 156 KRNLYLDLRFNNFE-GELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEII 232 (629)
Q Consensus 156 ~~L~~L~Ls~n~l~-~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 232 (629)
.+|++|||++...- ..+...++. .+|+.|.+++-.+...- +-..+.++.+|..||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d----------------------F~~lc~sFpNL~sLD 179 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD----------------------FSQLCASFPNLRSLD 179 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh----------------------HHHHhhccCccceee
Confidence 56777777665432 122223333 66666666665544221 112234455666666
Q ss_pred ccCCcccccCCcccccCCCCCCcEEEecCCcccc-cchHHhhcccCccceecccccccccc------cccccCCCCCcEE
Q 043930 233 LMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG-SVPQSFANLNNIMRLDISDNMLTGFV------SADICKLPHLLNF 305 (629)
Q Consensus 233 Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~~l~~l~~L~~L 305 (629)
+++.+++ .+ ..+. +|++|++|.|.+=.|.. ..-..+.+|++|++||+|..+..... .+....|++|+.|
T Consensus 180 IS~TnI~-nl-~GIS--~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 180 ISGTNIS-NL-SGIS--RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL 255 (699)
T ss_pred cCCCCcc-Cc-HHHh--ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEE
Confidence 6666665 22 2233 56666666666555542 22334556666666666655433211 1112235667777
Q ss_pred EecCCccCCcchh
Q 043930 306 TFSNNFFQGMAME 318 (629)
Q Consensus 306 ~L~~N~l~~~~~~ 318 (629)
|.+++.+++...+
T Consensus 256 DcSgTdi~~~~le 268 (699)
T KOG3665|consen 256 DCSGTDINEEILE 268 (699)
T ss_pred ecCCcchhHHHHH
Confidence 7776666554433
No 56
>PHA03247 large tegument protein UL36; Provisional
Probab=98.19 E-value=0.0022 Score=78.12 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=5.1
Q ss_pred cEEEecCCccc
Q 043930 255 TVFDIRSNKFH 265 (629)
Q Consensus 255 ~~L~Ls~n~l~ 265 (629)
+.|.+..|-|.
T Consensus 2361 ~LL~~D~NpIE 2371 (3151)
T PHA03247 2361 DLLHADLNPIE 2371 (3151)
T ss_pred HHhccCCchHH
Confidence 33444555443
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.16 E-value=1.1e-07 Score=96.10 Aligned_cols=228 Identities=13% Similarity=0.056 Sum_probs=122.3
Q ss_pred cccEEEEEcCCC-CccccCchh-hhCCcCCCEEECCCCC-CCcc-ChhhhcCCCCCcEEEccCCcCCCC--chhhhhCCC
Q 043930 83 ERFVAMIDLNKA-EIAAHLPPE-MGWLLDLIYFHANTNR-LCGI-IPETFANMHRLEEFDVSNNRLVGP--FPTVALTWK 156 (629)
Q Consensus 83 ~~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~ 156 (629)
.+.|++|+|..| .|++...+. ...+.+|++|+++++. |.+. +-..+.++++|+.+.+++|.=.+. +...-..+.
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 455777777773 444443332 2346778888887763 3321 223455666677776665432210 111122344
Q ss_pred CCcEEEccCCc-CccCCCchhc--cCCCCEEEecCcccc-ccCchhhhh--hhhHHHHhcCCcc-cccCCccc-cCCCCC
Q 043930 157 RNLYLDLRFNN-FEGELPPELF--QTGLDIIFLNHNWFR-GSIPETIGE--SLARYIVLSSNNF-TGCLPRSI-GYMKEL 228 (629)
Q Consensus 157 ~L~~L~Ls~n~-l~~~ip~~~~--~~~L~~L~L~~n~l~-~~~~~~~~~--~~L~~L~l~~n~l-~~~~~~~l-~~l~~L 228 (629)
.+..||+..|. ++++--..+. ...|++|+.+++... +..-..++. .+|+.|.+..++. ++.--..+ .++..|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 45566655543 2211111111 156777777766432 222222332 3566666666542 22111112 345788
Q ss_pred cEEEccCCcccccC-CcccccCCCCCCcEEEecCCcc-cccc----hHHhhcccCccceecccccc-cccccccccCCCC
Q 043930 229 QEIILMENQLSGCL-PSEIGSGEYKNLTVFDIRSNKF-HGSV----PQSFANLNNIMRLDISDNML-TGFVSADICKLPH 301 (629)
Q Consensus 229 ~~L~Ls~n~l~~~~-p~~~~~~~l~~L~~L~Ls~n~l-~~~~----~~~~~~l~~L~~L~Ls~N~l-~~~~~~~l~~l~~ 301 (629)
+.|++.++...... -..+. .++..|++|.|++|.+ ++.. ...-..+..|+.|.|+++.+ ++...+.+..+.+
T Consensus 349 e~l~~e~~~~~~d~tL~sls-~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLS-RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred hhhcccccceehhhhHhhhc-cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 88888877654221 11222 2678889998888854 3221 12224567788888988854 4445566777888
Q ss_pred CcEEEecCCc
Q 043930 302 LLNFTFSNNF 311 (629)
Q Consensus 302 L~~L~L~~N~ 311 (629)
|+.++|-++.
T Consensus 428 Leri~l~~~q 437 (483)
T KOG4341|consen 428 LERIELIDCQ 437 (483)
T ss_pred cceeeeechh
Confidence 9998888875
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.15 E-value=2.3e-06 Score=78.65 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCCCCcE
Q 043930 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLPHLLN 304 (629)
Q Consensus 226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~ 304 (629)
.+...+||++|.+. .+. .|. .+.+|.+|.|++|+|+.+.+..-.-+.+|..|.|.+|.|..... .-+..|++|++
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchh-hcc-cCC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 46677788888776 222 233 56778888888888885554444445678888888887764321 23566788888
Q ss_pred EEecCCccCCc---chhhhcCCCCCceecccCCccc
Q 043930 305 FTFSNNFFQGM---AMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 305 L~L~~N~l~~~---~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
|.+-+|.++.. -...+..+++|+.||+.+-...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 88888876653 2345667888888887765443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=1.8e-06 Score=79.33 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=76.7
Q ss_pred hHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc-hHHhhcccCcccee
Q 043930 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV-PQSFANLNNIMRLD 282 (629)
Q Consensus 204 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 282 (629)
...+||++|.+... ..|.++..|.+|.|++|+|+ .|...+.. .+.+|+.|.|.+|.|.... .+-+..+++|++|.
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhh-hccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34455555555422 45778899999999999999 55545542 5788999999999887321 24467889999999
Q ss_pred ccccccccc---ccccccCCCCCcEEEecCCcc
Q 043930 283 ISDNMLTGF---VSADICKLPHLLNFTFSNNFF 312 (629)
Q Consensus 283 Ls~N~l~~~---~~~~l~~l~~L~~L~L~~N~l 312 (629)
+-+|.+... ....++++++|+.||+.+=..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999988643 234568899999999876443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.08 E-value=9e-06 Score=84.44 Aligned_cols=139 Identities=11% Similarity=0.137 Sum_probs=74.2
Q ss_pred hcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHH
Q 043930 128 FANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYI 207 (629)
Q Consensus 128 ~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 207 (629)
+..+.+|++|+|++|.|+. ++. --.+|++|+|++|.-...++..+ ..+|++|+|++|.....++. .|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~-----sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE-----SVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc-----ccceE
Confidence 4556888899999887775 341 23468888888754333555433 36788888887732223333 34555
Q ss_pred HhcCCcccccCCccccCC-CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccc
Q 043930 208 VLSSNNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDN 286 (629)
Q Consensus 208 ~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 286 (629)
++.++.+.. |..+ .+|+.|.+.+++.... ..+...--.+|++|++++|... .++..+. .+|+.|+++.|
T Consensus 118 ~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDS-----IKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcc-----cccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 555444321 2222 3566666644331100 0111001146777777777654 2232222 36777777665
No 61
>PHA03247 large tegument protein UL36; Provisional
Probab=98.06 E-value=0.0061 Score=74.50 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=4.9
Q ss_pred hcCCCcccccch
Q 043930 24 QYDLKDKTFESH 35 (629)
Q Consensus 24 l~~L~~L~ls~~ 35 (629)
+.+.-.|||-..
T Consensus 2104 l~nF~RLDLv~Q 2115 (3151)
T PHA03247 2104 IYNFWRLDLVLQ 2115 (3151)
T ss_pred HHhhhhhhHHHH
Confidence 334444444433
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2e-05 Score=81.83 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=60.3
Q ss_pred CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC-cCccCCCchhccCCCCEE
Q 043930 106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN-NFEGELPPELFQTGLDII 184 (629)
Q Consensus 106 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~ip~~~~~~~L~~L 184 (629)
.+.+|++|+|++|.|.. ++ .--.+|++|+|++|.-...++..+ ..+|++|+|++| .+. .++ .+|+.|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-----~sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-----ESVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-----cccceE
Confidence 34556666666665542 22 111246666665543322233322 235666666665 332 232 345556
Q ss_pred EecCcccc--ccCchhhhhhhhHHHHhcCCcccccCCcccc-CC-CCCcEEEccCCcccccCCcccccCCCCCCcEEEec
Q 043930 185 FLNHNWFR--GSIPETIGESLARYIVLSSNNFTGCLPRSIG-YM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260 (629)
Q Consensus 185 ~L~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l-~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls 260 (629)
+|.++.+. +.++ ..|+.|.+.+++.... ..+. .+ .+|++|++++|... .++..+. .+|+.|+++
T Consensus 118 ~L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP----~SLk~L~ls 185 (426)
T PRK15386 118 EIKGSATDSIKNVP-----NGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI-ILPEKLP----ESLQSITLH 185 (426)
T ss_pred EeCCCCCcccccCc-----chHhheeccccccccc--cccccccCCcccEEEecCCCcc-cCccccc----ccCcEEEec
Confidence 65544432 1222 2345555533221100 0011 11 46777777776654 3333332 466777766
Q ss_pred CC
Q 043930 261 SN 262 (629)
Q Consensus 261 ~n 262 (629)
.|
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 55
No 63
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.93 E-value=3.5e-07 Score=98.33 Aligned_cols=38 Identities=29% Similarity=0.168 Sum_probs=26.6
Q ss_pred CCcEEEccCCcCCCCchh----hhhCCCCCcEEEccCCcCcc
Q 043930 133 RLEEFDVSNNRLVGPFPT----VALTWKRNLYLDLRFNNFEG 170 (629)
Q Consensus 133 ~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~Ls~n~l~~ 170 (629)
.|..|.|.+|.+...... .+..+.+|..|++++|.+.+
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~ 129 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD 129 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc
Confidence 377888888888754333 34456778888888888763
No 64
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.88 E-value=1.1e-07 Score=102.20 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=36.1
Q ss_pred ccceecccccccccc----cccccCCCCCcEEEecCCccCCcchh----hh-cCCCCCceecccCCcccccc
Q 043930 278 IMRLDISDNMLTGFV----SADICKLPHLLNFTFSNNFFQGMAME----CI-SGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 278 L~~L~Ls~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~~----~l-~~l~~L~~L~l~~N~l~~~~ 340 (629)
+..|++..+.+.+.. ...+.....++.++++.|...+.... .. .+. .++.++++.|+++...
T Consensus 378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~ 448 (478)
T KOG4308|consen 378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALG 448 (478)
T ss_pred cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcc
Confidence 556666666555432 22334556777888887766544321 11 233 7777788888777544
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.2e-05 Score=56.01 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=7.0
Q ss_pred ccCCCCCcEEEecCCccC
Q 043930 296 ICKLPHLLNFTFSNNFFQ 313 (629)
Q Consensus 296 l~~l~~L~~L~L~~N~l~ 313 (629)
|.+|.+|++|+|++|.|+
T Consensus 20 l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 20 LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp GTTCTTSSEEEETSSCCS
T ss_pred HhCCCCCCEEEecCCCCC
Confidence 333333333333333333
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.81 E-value=9.5e-06 Score=77.83 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=7.3
Q ss_pred CCCCcEEEecCCccc
Q 043930 251 YKNLTVFDIRSNKFH 265 (629)
Q Consensus 251 l~~L~~L~Ls~n~l~ 265 (629)
+.+|++|+|++|+|.
T Consensus 90 ~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIK 104 (260)
T ss_pred CCceeEEeecCCccc
Confidence 344555555555444
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=3.3e-05 Score=53.87 Aligned_cols=36 Identities=25% Similarity=0.501 Sum_probs=15.3
Q ss_pred CCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCC
Q 043930 109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV 145 (629)
Q Consensus 109 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 145 (629)
+|++|+|++|+|+. ++..|++|++|++|+|++|.|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444442 2333444444444444444444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=2.9e-06 Score=81.48 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=69.5
Q ss_pred CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc-cccccCCCCCc
Q 043930 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV-SADICKLPHLL 303 (629)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~ 303 (629)
+.+.+.|+++|++|+++ .+.. ++..|++|.|+-|+|+.. ..|..+++|++|+|..|.|.++. .+.+.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~-kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICE-KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHH-hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 45677788888887743 3332 677888888888888743 34777888888888888887642 23467788888
Q ss_pred EEEecCCccCCcc-----hhhhcCCCCCceec
Q 043930 304 NFTFSNNFFQGMA-----MECISGSRDDVYFE 330 (629)
Q Consensus 304 ~L~L~~N~l~~~~-----~~~l~~l~~L~~L~ 330 (629)
.|.|..|--.+.. ...|.-+++|++||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888887654432 24556677777776
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.67 E-value=2.3e-05 Score=85.89 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=18.0
Q ss_pred CcEEEecCCccCC-cchhhhcC-CCCCceecccCCc
Q 043930 302 LLNFTFSNNFFQG-MAMECISG-SRDDVYFEEKGNC 335 (629)
Q Consensus 302 L~~L~L~~N~l~~-~~~~~l~~-l~~L~~L~l~~N~ 335 (629)
|+.|+++.+.... .....+.. +..++.+++.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 6777777765432 22223222 5556666666543
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=2.7e-05 Score=74.76 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=56.8
Q ss_pred CCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCC--cccccchHHhhcccCccceeccccccccc-ccccccCCC
Q 043930 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN--KFHGSVPQSFANLNNIMRLDISDNMLTGF-VSADICKLP 300 (629)
Q Consensus 224 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~ 300 (629)
.+.+|+.|.+.+..++ .+. .+- .|.+|+.|+++.| ++.+.+.-....+++|++|+|++|+|..+ -...+..+.
T Consensus 41 ~~~~le~ls~~n~glt-t~~-~~P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLT-TLT-NFP--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhcccee-ecc-cCC--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3445555555555554 221 222 4667777777777 44443433344557777777777777631 112244566
Q ss_pred CCcEEEecCCccCCc---chhhhcCCCCCceec
Q 043930 301 HLLNFTFSNNFFQGM---AMECISGSRDDVYFE 330 (629)
Q Consensus 301 ~L~~L~L~~N~l~~~---~~~~l~~l~~L~~L~ 330 (629)
+|..||+.+|..+.. -...|.-+.+|++||
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 677777777755443 234455556666665
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00014 Score=64.03 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=24.9
Q ss_pred CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceec
Q 043930 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE 330 (629)
Q Consensus 251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 330 (629)
+.+|+.|++.++ +.......|.++.+|+.|++.+ .+..+....|..+.+|+.+++..+ +..+....|.++ .|+.+.
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred cccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence 334444444432 3322223344443444444433 222222233344444444444333 333333334443 444444
Q ss_pred c
Q 043930 331 E 331 (629)
Q Consensus 331 l 331 (629)
+
T Consensus 110 ~ 110 (129)
T PF13306_consen 110 I 110 (129)
T ss_dssp -
T ss_pred E
Confidence 3
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.34 E-value=2.4e-05 Score=85.68 Aligned_cols=109 Identities=17% Similarity=0.022 Sum_probs=55.6
Q ss_pred CCCCCcEEEccCCcCCCC--chhhhhCCCCCcEEEccCC-cCccCCC---chhc--cCCCCEEEecCcc-ccccCchhhh
Q 043930 130 NMHRLEEFDVSNNRLVGP--FPTVALTWKRNLYLDLRFN-NFEGELP---PELF--QTGLDIIFLNHNW-FRGSIPETIG 200 (629)
Q Consensus 130 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~ip---~~~~--~~~L~~L~L~~n~-l~~~~~~~~~ 200 (629)
.+..|+.|.+.++.-... +......+.+|+.|+++++ ....... ..+. ..+|+.|+|+++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666666533222 2344555666777776652 1111111 0111 1566677776666 4444333333
Q ss_pred h--hhhHHHHhcCCc-cccc-CCccccCCCCCcEEEccCCcc
Q 043930 201 E--SLARYIVLSSNN-FTGC-LPRSIGYMKELQEIILMENQL 238 (629)
Q Consensus 201 ~--~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l 238 (629)
. ..|++|.+.+|. +++. +......+.+|++|+|+++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3 256666665555 4433 222334456788888877654
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.32 E-value=0.0005 Score=60.54 Aligned_cols=117 Identities=14% Similarity=0.176 Sum_probs=63.4
Q ss_pred hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcccee
Q 043930 203 LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282 (629)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 282 (629)
+|+.+.+.. .+.......|.++.+|+.|++.++ +.......+. ++.+|+.+++.+ .+.......|..+.+|+.++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~--~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFS--NCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTT--T-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeee--cccccccccccc-cccccccccccccccccccc
Confidence 677777764 455555677888889999999875 5523333333 677899999976 44434455777899999999
Q ss_pred cccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCc
Q 043930 283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDV 327 (629)
Q Consensus 283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 327 (629)
+..+ +..+....|.++ +|+.+.+.+ .+..+...+|.++.+|+
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9776 555555667777 999999876 66666677888877764
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=4.6e-05 Score=73.44 Aligned_cols=84 Identities=13% Similarity=0.001 Sum_probs=44.2
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCc-hhhhhCCCCCcEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPF-PTVALTWKRNLYL 161 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L 161 (629)
+.+++.|++=+|+|.++ ..+.+|..|++|.|+-|+|+.. ..|..+++|++|+|+.|.|.+.- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34455566666665543 2334556666666666666543 34556666666666666665421 1123445555555
Q ss_pred EccCCcCcc
Q 043930 162 DLRFNNFEG 170 (629)
Q Consensus 162 ~Ls~n~l~~ 170 (629)
.|..|...|
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 555554443
No 75
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.08 E-value=0.002 Score=66.78 Aligned_cols=108 Identities=18% Similarity=0.047 Sum_probs=52.9
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhh---cCCCCCcEEEccCCcCCCCchhhhhC---C
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETF---ANMHRLEEFDVSNNRLVGPFPTVALT---W 155 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~l~~---l 155 (629)
...+++++|++.|.+....+..|.. -.--|.++.|.++..+-..+ .+-..|.+|+|+.|...+.++..+.. -
T Consensus 163 pnpr~r~~dls~npi~dkvpihl~~--p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIHLPQ--PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred CcchhhhhccCCCcccccCCccccC--CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 4556788888888876654433321 11124555555543211111 11124677777777666555544322 2
Q ss_pred CCCcEEEccCCcCcc-CCCchhcc---CCCCEEEecCccc
Q 043930 156 KRNLYLDLRFNNFEG-ELPPELFQ---TGLDIIFLNHNWF 191 (629)
Q Consensus 156 ~~L~~L~Ls~n~l~~-~ip~~~~~---~~L~~L~L~~n~l 191 (629)
..|++||.+...+.- .+...++. ++|...+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 345566665554431 11111221 4566666665544
No 76
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.74 E-value=0.0018 Score=44.94 Aligned_cols=38 Identities=37% Similarity=0.724 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCC---CCCCCcCceecC
Q 043930 39 MAYVGLQAFKKAIYSDPYNHTENWVG---TDVCQYNGVLCD 76 (629)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~~~l~~~~~---~~~c~~~g~~~~ 76 (629)
.+..+|++||+.+..+....+.+|.. .++|.|.||.|+
T Consensus 3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 46789999999998777788999986 599999999995
No 77
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=96.62 E-value=0.0023 Score=66.35 Aligned_cols=251 Identities=13% Similarity=0.030 Sum_probs=139.2
Q ss_pred EEcCCCCccccCchhhh---CCcCCCEEECCCCCCCccChhhhcC---CCCCcEEEccCCcCCCC---chhhhhCCCCCc
Q 043930 89 IDLNKAEIAAHLPPEMG---WLLDLIYFHANTNRLCGIIPETFAN---MHRLEEFDVSNNRLVGP---FPTVALTWKRNL 159 (629)
Q Consensus 89 L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~---l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~ 159 (629)
|.|+.|.++......+. .-..|++|+|+.|...+.++..+.. -.-|+.|+++...+.-. -.-.....++|.
T Consensus 192 l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~ 271 (553)
T KOG4242|consen 192 LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLT 271 (553)
T ss_pred cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccc
Confidence 55666665443222111 1245788888888877666654433 23566676666554311 112233456788
Q ss_pred EEEccCCcCcc----CCCchh---cc--CCCCEEEecCccccccCchhhhh-------hhhHHHHhcCCccccc-CCccc
Q 043930 160 YLDLRFNNFEG----ELPPEL---FQ--TGLDIIFLNHNWFRGSIPETIGE-------SLARYIVLSSNNFTGC-LPRSI 222 (629)
Q Consensus 160 ~L~Ls~n~l~~----~ip~~~---~~--~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~l~~n~l~~~-~~~~l 222 (629)
+.+++.|.... ++.... |. .++ +|++.++....+-...+.. ..--++++..|...+. ..+.-
T Consensus 272 ~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleac 350 (553)
T KOG4242|consen 272 FGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEAC 350 (553)
T ss_pred hhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhcc
Confidence 88888776542 222221 11 456 7777776655433222211 1123455555554432 11111
Q ss_pred cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc-----ccchHHh----hcccCccceeccccccccccc
Q 043930 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH-----GSVPQSF----ANLNNIMRLDISDNMLTGFVS 293 (629)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~----~~l~~L~~L~Ls~N~l~~~~~ 293 (629)
.+-..+++|++.+|++.|.+-........+.++.|++.+..-. +.+...+ ...--|+.+.++.|.+.....
T Consensus 351 i~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~ 430 (553)
T KOG4242|consen 351 IFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLE 430 (553)
T ss_pred ccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHH
Confidence 1224599999999999877655444335567888887654321 1111111 112347889999998875433
Q ss_pred cc---ccCCCCCcEEEecCCccCCcc----hhhhcCCCCCceecccCCcccccc
Q 043930 294 AD---ICKLPHLLNFTFSNNFFQGMA----MECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 294 ~~---l~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
.. +..-..|..|++++|...+.. ...+....+++.+..+.|....-.
T Consensus 431 s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 431 SAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred HHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccc
Confidence 22 334577999999999887653 445555667777777777665433
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=0.0011 Score=61.50 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc-ccccchHHhhc-ccCccceecccc-cccccccccccCCCCCc
Q 043930 227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK-FHGSVPQSFAN-LNNIMRLDISDN-MLTGFVSADICKLPHLL 303 (629)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~ 303 (629)
.++.+|-++..|..+.-+.+. ++..|+.|.+.+|. +.+...+.+++ ..+|+.|+|++| +|++.....+.++++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~--~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR--DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh--ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 345555555555544434443 44455555555442 22211122222 244555555544 34444444444455555
Q ss_pred EEEecC
Q 043930 304 NFTFSN 309 (629)
Q Consensus 304 ~L~L~~ 309 (629)
.|+|.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 554443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.00075 Score=62.48 Aligned_cols=81 Identities=10% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCcEEEecCCcccccchHHhhcccCccceeccccc-ccccccccccC-CCCCcEEEecCC-ccCCcchhhhcCCCCCcee
Q 043930 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICK-LPHLLNFTFSNN-FFQGMAMECISGSRDDVYF 329 (629)
Q Consensus 253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~-l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L 329 (629)
.++.+|.+++.|..+.-+.+.++..|+.|.+.+|. +.+...+.+.+ ..+|+.|+|++| +|++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34555555555554444445555555555555553 22221122222 245555555554 3555555555555555555
Q ss_pred cccC
Q 043930 330 EEKG 333 (629)
Q Consensus 330 ~l~~ 333 (629)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.60 E-value=0.00048 Score=64.91 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=68.5
Q ss_pred cccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCC
Q 043930 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLP 300 (629)
Q Consensus 221 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 300 (629)
.+......+.||++.|++. .+-..+. .+..|..||++.|.+. .++..+.++..++.+++.+|.+.. .+..+.++.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s--~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFS--ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchH--HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccC
Confidence 3455577888888888876 4444444 5677888888888887 778888888888888888888774 677788888
Q ss_pred CCcEEEecCCccCCc
Q 043930 301 HLLNFTFSNNFFQGM 315 (629)
Q Consensus 301 ~L~~L~L~~N~l~~~ 315 (629)
+++++++.+|.|.-.
T Consensus 112 ~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 112 HPKKNEQKKTEFFRK 126 (326)
T ss_pred CcchhhhccCcchHH
Confidence 888888888876543
No 81
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.48 E-value=0.77 Score=48.23 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=16.4
Q ss_pred CCCCCCCCCCcCceecCCCC-CCCcccEEEEEcCCCCc
Q 043930 60 ENWVGTDVCQYNGVLCDVFI-DNQERFVAMIDLNKAEI 96 (629)
Q Consensus 60 ~~~~~~~~c~~~g~~~~~~~-~~~~~~L~~L~L~~n~l 96 (629)
..|.....|. +.|.... ..+...|+.+||.+++|
T Consensus 55 ~~W~~~~~~G---al~lVkD~~~rsyFlrl~di~~~rl 89 (569)
T KOG3671|consen 55 NHWNKTGLCG---ALCLVKDNAQRSYFLRLVDIVNNRL 89 (569)
T ss_pred hhhccccCce---eEEEeeccccceeeeEEeeecCcee
Confidence 4676655543 4443111 11344466666666654
No 82
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.28 E-value=0.78 Score=48.16 Aligned_cols=13 Identities=31% Similarity=0.197 Sum_probs=7.6
Q ss_pred cCCCEEECCCCCC
Q 043930 108 LDLIYFHANTNRL 120 (629)
Q Consensus 108 ~~L~~L~L~~n~l 120 (629)
-.|+.+||.+|+|
T Consensus 77 yFlrl~di~~~rl 89 (569)
T KOG3671|consen 77 YFLRLVDIVNNRL 89 (569)
T ss_pred eeeEEeeecCcee
Confidence 3456666666664
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.81 E-value=0.00059 Score=64.32 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=56.0
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
...+++.||++.|++... -..|..++.|..|+++.|.+. .++..+..+..+..+++.+|+++. .+..+....+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccCCcchh
Confidence 345677777777766542 344566667777777777666 456666666677777777776665 56666677777777
Q ss_pred EccCCcCc
Q 043930 162 DLRFNNFE 169 (629)
Q Consensus 162 ~Ls~n~l~ 169 (629)
++.+|.|.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77776654
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.58 E-value=0.015 Score=33.69 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=4.9
Q ss_pred CcEEEecCCccc
Q 043930 254 LTVFDIRSNKFH 265 (629)
Q Consensus 254 L~~L~Ls~n~l~ 265 (629)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.05 E-value=0.023 Score=32.94 Aligned_cols=12 Identities=50% Similarity=0.581 Sum_probs=6.5
Q ss_pred ccceeccccccc
Q 043930 278 IMRLDISDNMLT 289 (629)
Q Consensus 278 L~~L~Ls~N~l~ 289 (629)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.04 E-value=0.13 Score=27.64 Aligned_cols=11 Identities=36% Similarity=0.256 Sum_probs=3.5
Q ss_pred CcEEEccCCcC
Q 043930 158 NLYLDLRFNNF 168 (629)
Q Consensus 158 L~~L~Ls~n~l 168 (629)
|++|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.91 E-value=0.2 Score=30.19 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=11.6
Q ss_pred CCCcEEEccCCcCccCCCchhc
Q 043930 156 KRNLYLDLRFNNFEGELPPELF 177 (629)
Q Consensus 156 ~~L~~L~Ls~n~l~~~ip~~~~ 177 (629)
.+|++|+|++|+|+ .++..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666665 4554443
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.91 E-value=0.2 Score=30.19 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=11.6
Q ss_pred CCCcEEEccCCcCccCCCchhc
Q 043930 156 KRNLYLDLRFNNFEGELPPELF 177 (629)
Q Consensus 156 ~~L~~L~Ls~n~l~~~ip~~~~ 177 (629)
.+|++|+|++|+|+ .++..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666665 4554443
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.72 E-value=0.11 Score=30.72 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=6.9
Q ss_pred CCCcEEEecCCccccc
Q 043930 252 KNLTVFDIRSNKFHGS 267 (629)
Q Consensus 252 ~~L~~L~Ls~n~l~~~ 267 (629)
++|++|+|++|+|++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555443
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.28 E-value=0.17 Score=29.80 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=7.5
Q ss_pred CCCcEEEecCCccCCcc
Q 043930 300 PHLLNFTFSNNFFQGMA 316 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~~~ 316 (629)
.+|++|+|++|.|++..
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 34555555555554443
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.70 E-value=0.46 Score=28.56 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=12.2
Q ss_pred CCCcEEEecCCccCCcchhhh
Q 043930 300 PHLLNFTFSNNFFQGMAMECI 320 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~~~~~~l 320 (629)
.+|++|+|++|+|..+..+.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544433
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.70 E-value=0.46 Score=28.56 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=12.2
Q ss_pred CCCcEEEecCCccCCcchhhh
Q 043930 300 PHLLNFTFSNNFFQGMAMECI 320 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~~~~~~l 320 (629)
.+|++|+|++|+|..+..+.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544433
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.38 E-value=0.22 Score=53.33 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=35.4
Q ss_pred CCCCCcEEEecCCccccc--chHHhhcccCccceecccc--cccccccccccC--CCCCcEEEecCCccCC
Q 043930 250 EYKNLTVFDIRSNKFHGS--VPQSFANLNNIMRLDISDN--MLTGFVSADICK--LPHLLNFTFSNNFFQG 314 (629)
Q Consensus 250 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~--l~~L~~L~L~~N~l~~ 314 (629)
+...+..|+|++|+|... +-..-...++|+.|+|++| .+.. ..++.+ ...|++|.|.||.|..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 445666777777776532 1112223467777777777 4432 222333 2456777777777654
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.30 E-value=0.18 Score=53.88 Aligned_cols=64 Identities=20% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCCcEEEccCCcccccC-CcccccCCCCCCcEEEecCCcccccchHHhhcc--cCccceecccccccc
Q 043930 226 KELQEIILMENQLSGCL-PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL--NNIMRLDISDNMLTG 290 (629)
Q Consensus 226 ~~L~~L~Ls~n~l~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~ 290 (629)
..+..|+|++|++...- ...+. ...++|+.|+|++|...-....++.++ ..|++|-|.||.|..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~ssls-q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLS-QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHH-HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 45556666666654210 01111 134567777777772211122233332 235667777776653
No 95
>PRK09718 hypothetical protein; Validated
Probab=87.13 E-value=0.39 Score=50.77 Aligned_cols=15 Identities=0% Similarity=-0.055 Sum_probs=9.5
Q ss_pred CCCcEEEecCCcccc
Q 043930 252 KNLTVFDIRSNKFHG 266 (629)
Q Consensus 252 ~~L~~L~Ls~n~l~~ 266 (629)
..|+.+|++.|.+.+
T Consensus 228 T~LkgVDFSdC~Le~ 242 (512)
T PRK09718 228 VRISTGNFKDCITEQ 242 (512)
T ss_pred CcCCCcccccccccc
Confidence 556666777666653
No 96
>PRK09718 hypothetical protein; Validated
Probab=83.85 E-value=0.91 Score=48.11 Aligned_cols=54 Identities=7% Similarity=0.011 Sum_probs=26.1
Q ss_pred CCCCEEEecCccccccCchhhhhhhh---HHHHhcCCcccccCCccccCCCCCcEEEccCCccc
Q 043930 179 TGLDIIFLNHNWFRGSIPETIGESLA---RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239 (629)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~~~~~~L---~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 239 (629)
.+|+..++.+|.+.+.. |....| +...+.++.+.+. .|.+ ..|+.+|++.|.+.
T Consensus 185 AnLskA~F~gCDLseAd---FSEcdLS~aKka~F~~cDLt~A---dF~q-T~LkgVDFSdC~Le 241 (512)
T PRK09718 185 CQIRNSNFDNCYLYASH---FTRAEFLSAKEISFIKSNLTAV---MFDH-VRISTGNFKDCITE 241 (512)
T ss_pred CcCCCCEEeCccCCcCC---ccCCccCCCCCCEEeCCCCCCC---CcCC-CcCCCccccccccc
Confidence 44555555555554332 111222 3344444444432 2222 57777777777766
No 97
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=80.54 E-value=1.5 Score=41.36 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=6.1
Q ss_pred CCcEEEccCCccc
Q 043930 227 ELQEIILMENQLS 239 (629)
Q Consensus 227 ~L~~L~Ls~n~l~ 239 (629)
+++--.|.+++|.
T Consensus 197 N~eGA~L~gcNfe 209 (302)
T KOG1665|consen 197 NAEGASLKGCNFE 209 (302)
T ss_pred ccccccccCcCCC
Confidence 4444444555554
No 98
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=78.98 E-value=1.2 Score=42.02 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=6.2
Q ss_pred CcEEEecCCcccc
Q 043930 254 LTVFDIRSNKFHG 266 (629)
Q Consensus 254 L~~L~Ls~n~l~~ 266 (629)
|.--||++|+|.|
T Consensus 258 LaGadLencnlsG 270 (302)
T KOG1665|consen 258 LAGADLENCNLSG 270 (302)
T ss_pred ccCCccccCCCCC
Confidence 3334455555554
No 99
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.52 E-value=1.7 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=9.2
Q ss_pred CCCcEEEecCCccCC
Q 043930 300 PHLLNFTFSNNFFQG 314 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~ 314 (629)
.+|+.|+|++|+|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666643
No 100
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.12 E-value=1.8 Score=26.58 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=6.4
Q ss_pred CCcEEEecCCccc
Q 043930 253 NLTVFDIRSNKFH 265 (629)
Q Consensus 253 ~L~~L~Ls~n~l~ 265 (629)
+|++|||++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 101
>PRK15196 secreted effector protein PipB2; Provisional
Probab=72.06 E-value=3.2 Score=43.12 Aligned_cols=8 Identities=13% Similarity=0.327 Sum_probs=3.1
Q ss_pred EEccCCcC
Q 043930 137 FDVSNNRL 144 (629)
Q Consensus 137 L~Ls~n~l 144 (629)
++|++..+
T Consensus 152 ~~L~ga~L 159 (350)
T PRK15196 152 MNLKGAVL 159 (350)
T ss_pred ccccCCcc
Confidence 34444333
No 102
>PRK15196 secreted effector protein PipB2; Provisional
Probab=69.66 E-value=6.8 Score=40.79 Aligned_cols=8 Identities=13% Similarity=0.492 Sum_probs=3.5
Q ss_pred EEEEcCCC
Q 043930 87 AMIDLNKA 94 (629)
Q Consensus 87 ~~L~L~~n 94 (629)
..++++.+
T Consensus 104 v~v~v~~~ 111 (350)
T PRK15196 104 VIVRVSKG 111 (350)
T ss_pred EEEEEecC
Confidence 33444444
No 103
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.34 E-value=4.5 Score=24.45 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=10.1
Q ss_pred CCcEEEccCCcCccCCCc
Q 043930 157 RNLYLDLRFNNFEGELPP 174 (629)
Q Consensus 157 ~L~~L~Ls~n~l~~~ip~ 174 (629)
+|++|++++|+++ .+++
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666665 4444
No 104
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=60.72 E-value=3.7e+02 Score=32.48 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=5.5
Q ss_pred hhhhHhhhcCC
Q 043930 2 FIARRQALSLP 12 (629)
Q Consensus 2 ~i~~r~~l~~~ 12 (629)
||.||.+..++
T Consensus 834 yiqRRL~kame 844 (1605)
T KOG0260|consen 834 YIQRRLMKAME 844 (1605)
T ss_pred hHHHHHHHHHH
Confidence 45555554433
No 105
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.03 E-value=10 Score=22.61 Aligned_cols=10 Identities=20% Similarity=0.291 Sum_probs=4.7
Q ss_pred CCcEEEecCC
Q 043930 301 HLLNFTFSNN 310 (629)
Q Consensus 301 ~L~~L~L~~N 310 (629)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444444
No 106
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=38.71 E-value=23 Score=40.22 Aligned_cols=7 Identities=29% Similarity=0.249 Sum_probs=2.8
Q ss_pred ceecccc
Q 043930 280 RLDISDN 286 (629)
Q Consensus 280 ~L~Ls~N 286 (629)
+||++.|
T Consensus 345 ~Ld~s~n 351 (782)
T PRK15377 345 FLNHEHN 351 (782)
T ss_pred HHhcCCC
Confidence 3444433
No 107
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=33.76 E-value=67 Score=36.65 Aligned_cols=7 Identities=29% Similarity=0.178 Sum_probs=2.9
Q ss_pred CCCCcch
Q 043930 15 GKLPNDF 21 (629)
Q Consensus 15 ~~i~~~l 21 (629)
|..++.+
T Consensus 129 ~~~~~~~ 135 (782)
T PRK15377 129 GAAPLPG 135 (782)
T ss_pred CcCCccc
Confidence 4444443
No 108
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.05 E-value=24 Score=45.95 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=29.9
Q ss_pred ecccccccccccccccCCCCCcEEEecCCccCCc
Q 043930 282 DISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315 (629)
Q Consensus 282 ~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 315 (629)
||++|+|+.+-...|..+.+|++|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6899999988778899999999999999988643
No 109
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=32.46 E-value=29 Score=45.25 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=29.3
Q ss_pred ECCCCCCCccChhhhcCCCCCcEEEccCCcCCC
Q 043930 114 HANTNRLCGIIPETFANMHRLEEFDVSNNRLVG 146 (629)
Q Consensus 114 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 146 (629)
||++|+|..+-...|..|.+|++|+|++|-|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888899999999999999998753
No 110
>PRK15197 secreted effector protein PipB; Provisional
Probab=31.95 E-value=17 Score=36.62 Aligned_cols=13 Identities=15% Similarity=-0.108 Sum_probs=6.5
Q ss_pred CCCEEEecCcccc
Q 043930 180 GLDIIFLNHNWFR 192 (629)
Q Consensus 180 ~L~~L~L~~n~l~ 192 (629)
.|+..+|.++.++
T Consensus 261 ~L~gad~~ga~~t 273 (291)
T PRK15197 261 ALTGADLTGSQHT 273 (291)
T ss_pred CCCCCcccCCccC
Confidence 4444555555544
No 111
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=31.70 E-value=14 Score=37.63 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=8.4
Q ss_pred CCCCEEEecCcccccc
Q 043930 179 TGLDIIFLNHNWFRGS 194 (629)
Q Consensus 179 ~~L~~L~L~~n~l~~~ 194 (629)
..|+.|++.+|.|+|.
T Consensus 255 ~sl~slnvesnFItg~ 270 (353)
T KOG3735|consen 255 KSLTSLNVESNFITGL 270 (353)
T ss_pred chhhheeccccccccH
Confidence 4455555555555543
No 112
>PRK15197 secreted effector protein PipB; Provisional
Probab=30.60 E-value=42 Score=33.84 Aligned_cols=13 Identities=8% Similarity=-0.171 Sum_probs=5.9
Q ss_pred CCceecccCCccc
Q 043930 325 DDVYFEEKGNCLA 337 (629)
Q Consensus 325 ~L~~L~l~~N~l~ 337 (629)
.|+..++.+.+++
T Consensus 261 ~L~gad~~ga~~t 273 (291)
T PRK15197 261 ALTGADLTGSQHT 273 (291)
T ss_pred CCCCCcccCCccC
Confidence 3444444444444
No 113
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=20.07 E-value=58 Score=33.27 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCCCEEEecCccccccCchhhhh-----hhhHHHHhcCCccccc
Q 043930 179 TGLDIIFLNHNWFRGSIPETIGE-----SLARYIVLSSNNFTGC 217 (629)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~~~~-----~~L~~L~l~~n~l~~~ 217 (629)
+.++...|.+.+..+.+...+.. ..|+.|++.+|.|+|.
T Consensus 227 t~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~ 270 (353)
T KOG3735|consen 227 THVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGL 270 (353)
T ss_pred chhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccH
Confidence 34455555555555443333322 3567777777777665
Done!