Query 043930
Match_columns 629
No_of_seqs 615 out of 4333
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 7.7E-38 2.6E-42 321.8 16.7 290 38-336 5-303 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-35 4E-40 342.4 15.9 258 83-340 393-720 (768)
3 4eco_A Uncharacterized protein 100.0 1.6E-34 5.6E-39 325.6 16.0 290 36-337 27-446 (636)
4 3v47_A TOLL-like receptor 5B a 100.0 1.6E-33 5.4E-38 305.1 17.2 256 82-339 77-410 (455)
5 3rgz_A Protein brassinosteroid 100.0 4.4E-34 1.5E-38 329.2 13.3 254 85-340 369-696 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 6.3E-33 2.2E-37 300.4 14.0 278 82-361 52-412 (455)
7 4fcg_A Uncharacterized protein 100.0 7.3E-33 2.5E-37 286.5 11.8 273 36-338 24-315 (328)
8 4ecn_A Leucine-rich repeat pro 100.0 5E-32 1.7E-36 311.3 19.3 266 37-314 267-658 (876)
9 2id5_A Lingo-1, leucine rich r 100.0 3.5E-32 1.2E-36 296.4 16.1 250 84-337 80-333 (477)
10 2id5_A Lingo-1, leucine rich r 100.0 8.9E-32 3E-36 293.3 10.4 310 13-361 22-337 (477)
11 4eco_A Uncharacterized protein 100.0 1.7E-31 5.9E-36 300.9 12.8 228 82-313 204-470 (636)
12 3t6q_A CD180 antigen; protein- 100.0 6.6E-30 2.3E-34 287.0 18.7 273 85-361 255-564 (606)
13 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-30 1.1E-34 289.5 16.0 158 202-361 399-562 (606)
14 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-30 9E-35 265.6 13.3 229 108-340 50-284 (313)
15 3o6n_A APL1; leucine-rich repe 100.0 4.4E-30 1.5E-34 272.4 15.2 294 23-340 43-355 (390)
16 3t6q_A CD180 antigen; protein- 100.0 4.5E-30 1.5E-34 288.3 15.1 255 82-339 79-391 (606)
17 4ecn_A Leucine-rich repeat pro 100.0 1.3E-29 4.5E-34 291.3 16.4 312 14-340 504-843 (876)
18 1xku_A Decorin; proteoglycan, 100.0 9.9E-29 3.4E-33 255.9 21.3 264 67-340 30-309 (330)
19 2z7x_B TOLL-like receptor 1, v 100.0 7.1E-30 2.4E-34 281.3 13.4 152 204-360 326-484 (520)
20 2ft3_A Biglycan; proteoglycan, 100.0 4.9E-29 1.7E-33 258.4 18.8 263 68-340 33-310 (332)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-30 1.2E-34 283.9 10.7 251 82-339 88-483 (520)
22 4fmz_A Internalin; leucine ric 100.0 4.1E-29 1.4E-33 260.5 17.5 289 20-340 39-327 (347)
23 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-29 1.7E-33 283.6 19.5 279 82-362 327-627 (680)
24 1xku_A Decorin; proteoglycan, 100.0 3.9E-29 1.3E-33 258.9 16.3 246 82-335 74-330 (330)
25 3o6n_A APL1; leucine-rich repe 100.0 2.8E-29 9.7E-34 266.2 15.3 270 83-359 44-354 (390)
26 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-29 8.5E-34 260.6 13.8 246 82-335 76-331 (332)
27 3oja_B Anopheles plasmodium-re 100.0 3.6E-29 1.2E-33 280.2 16.0 251 83-340 50-340 (597)
28 2z80_A TOLL-like receptor 2, v 100.0 2E-29 6.9E-34 263.6 13.0 272 64-339 26-316 (353)
29 3j0a_A TOLL-like receptor 5; m 100.0 9.2E-29 3.2E-33 287.8 19.3 256 82-339 71-377 (844)
30 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-28 4.1E-33 276.7 19.3 135 203-340 377-513 (606)
31 2z66_A Variable lymphocyte rec 100.0 4.3E-29 1.5E-33 255.7 13.8 243 68-313 7-261 (306)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-29 4.2E-34 282.1 9.7 154 180-337 354-510 (562)
33 3oja_B Anopheles plasmodium-re 100.0 7.7E-29 2.6E-33 277.5 15.9 294 23-340 49-361 (597)
34 2z66_A Variable lymphocyte rec 100.0 1.4E-28 4.8E-33 251.9 15.7 247 87-339 10-263 (306)
35 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-28 4.7E-33 280.1 17.0 250 84-335 97-364 (680)
36 2z63_A TOLL-like receptor 4, v 100.0 1.6E-28 5.6E-33 273.4 16.5 156 203-361 374-535 (570)
37 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-28 8.3E-33 284.2 16.8 303 18-339 41-396 (844)
38 2z63_A TOLL-like receptor 4, v 100.0 1.1E-28 3.9E-33 274.6 13.2 159 179-339 373-533 (570)
39 3zyj_A Leucine-rich repeat-con 100.0 7.9E-28 2.7E-32 259.3 18.6 243 88-338 47-293 (440)
40 4fmz_A Internalin; leucine ric 100.0 8.8E-28 3E-32 250.4 18.0 290 15-337 57-346 (347)
41 3zyi_A Leucine-rich repeat-con 100.0 7.9E-28 2.7E-32 260.2 18.1 226 108-338 75-304 (452)
42 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-28 8.8E-33 270.6 14.3 256 83-339 25-402 (549)
43 4g8a_A TOLL-like receptor 4; l 100.0 1E-27 3.5E-32 270.1 19.0 133 227-361 446-584 (635)
44 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7E-28 2.4E-32 267.9 17.3 113 223-339 350-465 (562)
45 1o6v_A Internalin A; bacterial 99.9 1.1E-27 3.6E-32 260.2 16.9 237 83-337 111-366 (466)
46 1o6v_A Internalin A; bacterial 99.9 7.5E-28 2.6E-32 261.4 15.6 243 82-342 132-393 (466)
47 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-28 4.3E-33 273.1 7.7 307 13-338 16-424 (549)
48 3zyi_A Leucine-rich repeat-con 99.9 4.1E-27 1.4E-31 254.5 16.6 229 82-315 73-305 (452)
49 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-27 1.4E-31 254.2 15.9 282 18-339 35-354 (457)
50 4g8a_A TOLL-like receptor 4; l 99.9 4E-27 1.4E-31 265.2 15.8 132 206-339 449-582 (635)
51 1ozn_A Reticulon 4 receptor; N 99.9 5.5E-27 1.9E-31 237.5 14.9 222 87-314 14-239 (285)
52 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-27 1.4E-31 238.4 13.9 238 82-322 30-270 (285)
53 1wwl_A Monocyte differentiatio 99.9 6.8E-29 2.3E-33 255.0 0.6 246 83-339 42-311 (312)
54 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-27 4E-32 246.4 9.5 237 83-334 33-272 (317)
55 3zyj_A Leucine-rich repeat-con 99.9 9.3E-27 3.2E-31 250.9 17.0 228 82-314 62-293 (440)
56 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-27 6.4E-32 244.9 7.1 241 84-337 10-250 (317)
57 2z80_A TOLL-like receptor 2, v 99.9 2.9E-26 9.9E-31 239.6 15.2 266 89-360 36-317 (353)
58 2o6q_A Variable lymphocyte rec 99.9 1.3E-25 4.3E-30 225.7 18.8 217 65-315 2-220 (270)
59 1z7x_W Ribonuclease inhibitor; 99.9 3E-28 1E-32 264.0 -1.5 259 83-341 112-415 (461)
60 4fcg_A Uncharacterized protein 99.9 9.1E-26 3.1E-30 233.2 15.7 205 82-315 102-316 (328)
61 3oja_A Leucine-rich immune mol 99.9 1.7E-26 5.9E-31 251.5 9.8 235 83-332 33-270 (487)
62 3goz_A Leucine-rich repeat-con 99.9 2.1E-26 7E-31 241.6 9.6 252 88-339 2-299 (362)
63 1wwl_A Monocyte differentiatio 99.9 6.3E-27 2.1E-31 240.3 5.5 205 84-315 95-311 (312)
64 3oja_A Leucine-rich immune mol 99.9 2.1E-26 7.3E-31 250.8 9.3 236 90-338 16-251 (487)
65 1z7x_W Ribonuclease inhibitor; 99.9 7.7E-27 2.6E-31 252.9 3.8 310 21-338 24-384 (461)
66 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.4E-29 217.8 19.0 205 108-338 28-238 (276)
67 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-24 6.2E-29 233.5 19.2 208 83-316 41-249 (457)
68 1jl5_A Outer protein YOPM; leu 99.9 2.4E-25 8.3E-30 240.2 11.7 231 7-265 16-270 (454)
69 2z62_A TOLL-like receptor 4, v 99.9 1.4E-24 4.8E-29 218.7 15.8 208 83-315 27-239 (276)
70 2ca6_A RAN GTPase-activating p 99.9 2.6E-25 8.7E-30 235.4 6.2 232 83-316 31-319 (386)
71 1p9a_G Platelet glycoprotein I 99.9 1.6E-23 5.5E-28 212.4 17.5 200 83-314 9-209 (290)
72 2ast_B S-phase kinase-associat 99.9 2.6E-25 8.8E-30 230.6 2.9 248 85-341 48-310 (336)
73 3rfs_A Internalin B, repeat mo 99.9 4.7E-24 1.6E-28 214.4 11.4 108 222-338 129-236 (272)
74 2ca6_A RAN GTPase-activating p 99.9 5E-25 1.7E-29 233.2 3.9 239 100-340 24-319 (386)
75 1jl5_A Outer protein YOPM; leu 99.9 2.3E-24 7.8E-29 232.6 7.2 227 84-337 11-250 (454)
76 3rfs_A Internalin B, repeat mo 99.9 6.3E-24 2.2E-28 213.5 9.7 226 83-324 18-246 (272)
77 4glp_A Monocyte differentiatio 99.9 7.3E-24 2.5E-28 217.2 9.5 227 85-338 65-308 (310)
78 1p9a_G Platelet glycoprotein I 99.9 2.1E-22 7.2E-27 204.2 19.7 204 104-338 6-209 (290)
79 3goz_A Leucine-rich repeat-con 99.9 4.9E-24 1.7E-28 223.5 7.9 233 83-316 21-300 (362)
80 3m19_A Variable lymphocyte rec 99.9 1.1E-22 3.7E-27 201.9 16.8 192 66-315 3-194 (251)
81 4glp_A Monocyte differentiatio 99.9 1.6E-23 5.5E-28 214.7 10.8 204 84-314 91-308 (310)
82 1h6u_A Internalin H; cell adhe 99.9 1.7E-22 5.7E-27 206.9 18.2 195 82-316 39-233 (308)
83 3g06_A SSPH2 (leucine-rich rep 99.9 3.5E-23 1.2E-27 230.4 13.2 226 84-341 61-301 (622)
84 2o6q_A Variable lymphocyte rec 99.9 7.9E-22 2.7E-26 197.9 19.3 182 83-290 36-219 (270)
85 1h6u_A Internalin H; cell adhe 99.9 4.8E-22 1.7E-26 203.4 17.1 198 104-341 37-234 (308)
86 2xwt_C Thyrotropin receptor; s 99.9 6E-22 2E-26 194.9 13.0 194 109-334 32-236 (239)
87 2ast_B S-phase kinase-associat 99.9 3.8E-23 1.3E-27 214.2 3.6 233 84-322 70-315 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 7.8E-22 2.7E-26 194.1 12.4 198 83-311 30-237 (239)
89 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-21 7.5E-26 215.9 17.2 257 13-323 51-307 (622)
90 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.8E-26 193.8 13.8 178 134-339 16-194 (251)
91 3ogk_B Coronatine-insensitive 99.8 1.5E-22 5.2E-27 226.2 0.3 258 83-344 219-533 (592)
92 2o6s_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 177.7 15.2 162 107-301 27-190 (208)
93 1m9s_A Internalin B; cell inva 99.8 8.9E-21 3.1E-25 210.7 11.7 173 105-291 40-212 (605)
94 1h6t_A Internalin B; cell adhe 99.8 2.2E-20 7.4E-25 189.5 13.5 170 83-290 45-214 (291)
95 1h6t_A Internalin B; cell adhe 99.8 1.6E-20 5.5E-25 190.4 11.7 195 83-317 23-217 (291)
96 4ay9_X Follicle-stimulating ho 99.8 7.1E-21 2.4E-25 198.4 8.8 220 108-335 30-257 (350)
97 3cvr_A Invasion plasmid antige 99.8 7.5E-21 2.6E-25 209.1 9.1 196 69-298 49-252 (571)
98 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.3E-25 207.4 10.3 188 108-323 59-253 (571)
99 3ogk_B Coronatine-insensitive 99.8 2.2E-21 7.5E-26 216.8 2.6 255 82-339 190-503 (592)
100 2o6s_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 170.9 14.8 177 111-323 10-188 (208)
101 1m9s_A Internalin B; cell inva 99.8 1.6E-19 5.6E-24 200.6 12.8 200 107-322 20-219 (605)
102 4b8c_D Glucose-repressible alc 99.8 1.1E-19 3.6E-24 207.0 10.2 253 42-337 135-404 (727)
103 4ay9_X Follicle-stimulating ho 99.8 9.1E-20 3.1E-24 190.0 8.1 218 111-333 12-235 (350)
104 1xeu_A Internalin C; cellular 99.8 7.1E-20 2.4E-24 182.7 6.5 171 82-291 17-187 (263)
105 1dce_A Protein (RAB geranylger 99.8 4.4E-22 1.5E-26 219.9 -11.2 187 129-339 346-548 (567)
106 2xot_A Amphoterin-induced prot 99.8 2.2E-19 7.5E-24 187.9 9.8 175 135-337 21-202 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-18 5.8E-23 167.9 14.9 93 220-314 75-167 (220)
108 2v9t_B SLIT homolog 2 protein 99.8 4.6E-19 1.6E-23 172.0 10.6 150 158-312 13-164 (220)
109 3e6j_A Variable lymphocyte rec 99.8 4.8E-18 1.6E-22 165.8 16.6 162 59-266 10-173 (229)
110 2p1m_B Transport inhibitor res 99.8 3.5E-20 1.2E-24 207.1 -1.0 254 83-340 210-522 (594)
111 1xeu_A Internalin C; cellular 99.8 8E-19 2.7E-23 175.1 9.0 172 106-317 17-189 (263)
112 2xot_A Amphoterin-induced prot 99.8 2E-18 6.8E-23 180.6 12.2 175 87-289 21-202 (361)
113 4ezg_A Putative uncharacterize 99.8 4.3E-18 1.5E-22 162.1 13.2 111 222-338 84-195 (197)
114 2p1m_B Transport inhibitor res 99.8 1.4E-20 4.7E-25 210.4 -4.8 115 225-341 371-498 (594)
115 3e6j_A Variable lymphocyte rec 99.7 3.3E-18 1.1E-22 167.0 11.0 153 157-314 20-173 (229)
116 2v9t_B SLIT homolog 2 protein 99.7 3.4E-18 1.1E-22 165.8 10.6 152 182-337 14-165 (220)
117 4ezg_A Putative uncharacterize 99.7 7.3E-18 2.5E-22 160.5 12.3 154 105-314 41-195 (197)
118 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.5E-22 162.4 13.0 152 111-290 14-167 (220)
119 3sb4_A Hypothetical leucine ri 99.7 1.3E-18 4.3E-23 179.8 4.7 103 225-331 225-328 (329)
120 4b8c_D Glucose-repressible alc 99.7 9E-19 3.1E-23 199.4 3.9 112 84-199 224-336 (727)
121 1dce_A Protein (RAB geranylger 99.7 1.6E-19 5.3E-24 199.5 -5.3 204 105-331 346-567 (567)
122 1w8a_A SLIT protein; signaling 99.7 1.9E-16 6.6E-21 149.9 12.0 131 159-315 11-141 (192)
123 2ell_A Acidic leucine-rich nuc 99.7 8.4E-17 2.9E-21 148.9 9.0 132 205-340 27-163 (168)
124 2je0_A Acidic leucine-rich nuc 99.6 2.4E-16 8.2E-21 142.7 8.1 127 203-333 18-149 (149)
125 1w8a_A SLIT protein; signaling 99.6 3.4E-16 1.1E-20 148.3 8.9 129 206-339 12-141 (192)
126 2ell_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 142.9 9.2 64 224-289 93-160 (168)
127 2wfh_A SLIT homolog 2 protein 99.6 9.6E-16 3.3E-20 145.2 9.4 109 226-337 31-139 (193)
128 2wfh_A SLIT homolog 2 protein 99.6 3E-15 1E-19 141.7 12.2 128 159-314 13-140 (193)
129 3sb4_A Hypothetical leucine ri 99.6 3E-16 1E-20 161.9 5.3 208 131-344 100-317 (329)
130 4fdw_A Leucine rich hypothetic 99.6 2.6E-15 9E-20 158.6 12.3 240 86-340 115-361 (401)
131 4fdw_A Leucine rich hypothetic 99.6 1.5E-14 5.2E-19 152.8 15.1 241 85-338 136-384 (401)
132 2o6r_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 138.1 10.1 130 181-314 9-138 (177)
133 2je0_A Acidic leucine-rich nuc 99.6 2.9E-15 9.9E-20 135.5 8.0 127 132-308 17-148 (149)
134 2o6r_A Variable lymphocyte rec 99.6 5.9E-15 2E-19 137.6 9.6 129 205-338 10-138 (177)
135 1ds9_A Outer arm dynein; leuci 99.6 1.1E-16 3.7E-21 152.4 -2.7 107 225-338 69-186 (198)
136 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-15 2.5E-19 136.9 7.0 87 251-337 63-153 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 2.2E-16 7.5E-21 150.3 -3.9 86 104-192 14-106 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 2.3E-14 8E-19 133.5 9.0 90 221-314 59-154 (176)
139 3un9_A NLR family member X1; l 99.5 1.6E-15 5.6E-20 158.6 0.1 168 108-296 72-259 (372)
140 3un9_A NLR family member X1; l 99.5 1.7E-15 5.9E-20 158.4 -0.5 85 85-169 73-168 (372)
141 3g39_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 128.8 9.7 103 206-313 13-115 (170)
142 2r9u_A Variable lymphocyte rec 99.4 2.2E-13 7.5E-18 126.6 9.9 104 206-314 16-119 (174)
143 3g39_A Variable lymphocyte rec 99.4 1.3E-13 4.4E-18 127.6 7.7 108 227-339 10-117 (170)
144 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 121.1 9.0 105 229-338 15-119 (174)
145 2ra8_A Uncharacterized protein 99.3 1.9E-11 6.6E-16 126.7 12.1 163 148-335 164-341 (362)
146 2ifg_A High affinity nerve gro 99.2 9.7E-12 3.3E-16 128.9 8.9 104 207-315 13-118 (347)
147 4fs7_A Uncharacterized protein 99.2 9.9E-12 3.4E-16 131.3 7.9 220 101-334 155-376 (394)
148 2ifg_A High affinity nerve gro 99.2 1E-11 3.4E-16 128.8 7.3 105 229-338 11-117 (347)
149 4gt6_A Cell surface protein; l 99.2 8.3E-11 2.9E-15 124.1 14.2 113 219-337 258-370 (394)
150 2ra8_A Uncharacterized protein 99.2 2.2E-11 7.6E-16 126.3 7.4 208 82-311 105-341 (362)
151 4fs7_A Uncharacterized protein 99.1 5.4E-10 1.9E-14 117.8 14.5 245 82-340 69-358 (394)
152 4gt6_A Cell surface protein; l 99.0 7E-10 2.4E-14 117.0 11.9 111 218-336 280-390 (394)
153 4h09_A Hypothetical leucine ri 98.9 8.3E-09 2.8E-13 108.1 15.6 109 221-334 235-343 (379)
154 1io0_A Tropomodulin; LRR prote 98.9 2.8E-10 9.4E-15 106.6 1.9 120 218-339 28-166 (185)
155 1io0_A Tropomodulin; LRR prote 98.8 2.2E-09 7.6E-14 100.4 3.6 112 83-194 35-166 (185)
156 4h09_A Hypothetical leucine ri 98.7 8.5E-08 2.9E-12 100.3 14.0 242 84-339 46-324 (379)
157 3rw6_A Nuclear RNA export fact 98.5 1E-08 3.6E-13 100.8 0.6 122 206-330 120-257 (267)
158 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.3E-12 85.9 4.9 87 226-314 61-154 (176)
159 3rw6_A Nuclear RNA export fact 98.4 1.9E-07 6.6E-12 91.8 5.3 60 85-146 171-234 (267)
160 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.3E-12 85.9 3.9 89 251-339 60-155 (176)
161 1pgv_A TMD-1, tropomodulin TMD 98.3 3.4E-07 1.1E-11 85.3 4.5 116 221-338 36-171 (197)
162 1pgv_A TMD-1, tropomodulin TMD 98.3 3.4E-07 1.2E-11 85.2 3.8 87 103-189 36-136 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0015 5.2E-08 56.5 5.5 56 230-289 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0024 8.3E-08 55.2 5.0 57 255-313 11-68 (130)
165 2lz0_A Uncharacterized protein 74.0 2.8 9.4E-05 33.8 3.8 47 263-310 7-53 (100)
166 2w7z_A EFSQNR, pentapeptide re 72.9 0.93 3.2E-05 42.3 0.8 54 227-290 131-184 (214)
167 2lz0_A Uncharacterized protein 72.0 4.1 0.00014 32.8 4.3 35 250-285 18-52 (100)
168 2w7z_A EFSQNR, pentapeptide re 70.3 2.9 9.9E-05 38.8 3.6 12 254-265 132-143 (214)
169 2xt2_A ALBG, MCBG-like protein 62.9 3 0.0001 38.1 2.0 7 257-263 100-106 (200)
170 2xt2_A ALBG, MCBG-like protein 62.8 4.1 0.00014 37.2 2.9 8 161-168 74-81 (200)
171 3h0g_A DNA-directed RNA polyme 56.9 2.3 7.7E-05 51.8 0.0 6 233-238 1314-1319(1752)
172 3pss_A QNR; pentapeptide repea 39.5 4.3 0.00015 37.5 -1.1 12 158-169 83-94 (216)
173 3nb2_A Secreted effector prote 30.9 15 0.00053 39.6 1.3 12 228-239 162-173 (613)
174 3n90_A P15, thylakoid lumenal 28.1 53 0.0018 28.1 4.2 12 278-289 78-89 (152)
175 3nb2_A Secreted effector prote 22.4 39 0.0013 36.5 2.6 15 300-314 160-174 (613)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.7e-38 Score=321.84 Aligned_cols=290 Identities=24% Similarity=0.351 Sum_probs=259.4
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCC-CCCCCC--cCceecCCCCCCCcccEEEEEcCCCCccc--cCchhhhCCcCCCE
Q 043930 38 KMAYVGLQAFKKAIYSDPYNHTENWV-GTDVCQ--YNGVLCDVFIDNQERFVAMIDLNKAEIAA--HLPPEMGWLLDLIY 112 (629)
Q Consensus 38 ~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~c~--~~g~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~ 112 (629)
..+..+|++||+.+. +.. .+..|. +.++|. |.||.|+... ...+|+.|+|++|++.+ .++..|+++++|++
T Consensus 5 ~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 5 PQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp HHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred HHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 345678999999874 443 677896 457888 9999997421 12679999999999998 89999999999999
Q ss_pred EECCC-CCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCcc
Q 043930 113 FHANT-NRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNW 190 (629)
Q Consensus 113 L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~ 190 (629)
|+|++ |++.+.++..|.++.+|++|+|++|+|++.++..|.++.+|++|+|++|+|++.++..+.. .+|++|+|++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 9999999999999999999999999999889999999999999999999999888888776 999999999999
Q ss_pred ccccCchhhhhh--hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930 191 FRGSIPETIGES--LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268 (629)
Q Consensus 191 l~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~ 268 (629)
|++.++..++.. .|++|++++|++.+.++..|..+. |++|+|++|.|++.++..+. .+.+|++|+|++|+|++.+
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCBG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECCCCceeeec
Confidence 999998888773 799999999999999999999987 99999999999988888887 8999999999999999766
Q ss_pred hHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 269 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
+. +..+.+|++|+|++|+|++.++..|.++.+|++|+|++|+|++.++.. ..+.+|+.|++.+|..
T Consensus 238 ~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 238 GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 54 788999999999999999889999999999999999999999887765 7889999999999973
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-35 Score=342.38 Aligned_cols=258 Identities=24% Similarity=0.386 Sum_probs=240.1
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
..+|+.|+|++|++.+.++..|+++++|++|+|++|++.+.++..|.++.+|++|+|++|.+.+.++..+..+.+|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930 163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG 240 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 240 (629)
|++|++++.++..+.. .+|++|+|++|++++.++..++. .+|++|+|++|++.+.++..|+++++|++|+|++|.+.|
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9999999888888776 89999999999999999998877 589999999999999999999999999999999999988
Q ss_pred cCCccccc--------------------------------------------------------------------CCCC
Q 043930 241 CLPSEIGS--------------------------------------------------------------------GEYK 252 (629)
Q Consensus 241 ~~p~~~~~--------------------------------------------------------------------~~l~ 252 (629)
.++..++. +.+.
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 77765431 1356
Q ss_pred CCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceeccc
Q 043930 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEK 332 (629)
Q Consensus 253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~ 332 (629)
+|++|||++|+|+|.++..|+++.+|++|+|++|.|+|.++..|.++.+|++|||++|++++.++..+.++..|++|+|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccc
Q 043930 333 GNCLAEME 340 (629)
Q Consensus 333 ~N~l~~~~ 340 (629)
+|.+++..
T Consensus 713 ~N~l~g~i 720 (768)
T 3rgz_A 713 NNNLSGPI 720 (768)
T ss_dssp SSEEEEEC
T ss_pred CCcccccC
Confidence 99998653
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-34 Score=325.56 Aligned_cols=290 Identities=17% Similarity=0.251 Sum_probs=230.9
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCCC-------CCC-CCCCCCc---CceecCCCCCCCcccEEEEEcCCCCccccCchhh
Q 043930 36 RMKMAYVGLQAFKKAIYSDPYNHTE-------NWV-GTDVCQY---NGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEM 104 (629)
Q Consensus 36 ~l~~~~~~l~~~~~~~~~~~~~~l~-------~~~-~~~~c~~---~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 104 (629)
....++.||.++++++....|.... +|. +.++|.| .||.|+. ..+|+.|+|+++++.|.++.+|
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-----~~~V~~L~L~~~~l~g~lp~~l 101 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-----NGRVTGLSLEGFGASGRVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-----TCCEEEEECTTSCCEEEECGGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-----CCCEEEEEecCcccCCcCChHH
Confidence 3345788999999998776665444 796 5689999 9999973 2689999999999999999999
Q ss_pred hCCcCCCEEECCCCCC----------------------------------------------------------------
Q 043930 105 GWLLDLIYFHANTNRL---------------------------------------------------------------- 120 (629)
Q Consensus 105 ~~l~~L~~L~L~~n~l---------------------------------------------------------------- 120 (629)
++|++|++|+|++|.+
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999998843
Q ss_pred --------------CccChhhhcCCCCCcEEEccCCcCCCC-----------------chhhhh--CCCCCcEEEccCCc
Q 043930 121 --------------CGIIPETFANMHRLEEFDVSNNRLVGP-----------------FPTVAL--TWKRNLYLDLRFNN 167 (629)
Q Consensus 121 --------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~l~--~l~~L~~L~Ls~n~ 167 (629)
++ ++..|+++++|++|+|++|.|++. ++..+. ++.+|++|+|++|+
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 34 677899999999999999999985 888888 99999999999999
Q ss_pred CccCCCchhcc-CCCCEEEecCcc-ccc-cCchhhhh-------hhhHHHHhcCCcccccCCc--cccCCCCCcEEEccC
Q 043930 168 FEGELPPELFQ-TGLDIIFLNHNW-FRG-SIPETIGE-------SLARYIVLSSNNFTGCLPR--SIGYMKELQEIILME 235 (629)
Q Consensus 168 l~~~ip~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~-------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~Ls~ 235 (629)
+.+.++..+.. .+|++|+|++|. ++| .++..++. .+|++|+|++|+++ .++. .|+++.+|++|+|++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 99999988877 899999999998 998 78888876 58999999999999 7887 899999999999999
Q ss_pred CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccC-ccceecccccccccccccccCCC--CCcEEEecCCcc
Q 043930 236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN-IMRLDISDNMLTGFVSADICKLP--HLLNFTFSNNFF 312 (629)
Q Consensus 236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l 312 (629)
|+++|.++ .+. .+.+|++|+|++|+|+ .++..|.++.+ |++|+|++|.|+ .++..+..+. +|++|+|++|.|
T Consensus 340 N~l~g~ip-~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 340 NQLEGKLP-AFG--SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CCCEEECC-CCE--EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CcCccchh-hhC--CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 99998888 555 6777788888887777 66666777777 777777777776 3444444433 556666666655
Q ss_pred CCcchhhhc-------CCCCCceecccCCccc
Q 043930 313 QGMAMECIS-------GSRDDVYFEEKGNCLA 337 (629)
Q Consensus 313 ~~~~~~~l~-------~l~~L~~L~l~~N~l~ 337 (629)
.+..+..|. .+.+|++|+|++|.|+
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 554444444 4445555555555544
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-33 Score=305.15 Aligned_cols=256 Identities=17% Similarity=0.190 Sum_probs=200.1
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhh--hcCCCCCcEEEccCCcCCCCchhh-hhCCCCC
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPET--FANMHRLEEFDVSNNRLVGPFPTV-ALTWKRN 158 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L 158 (629)
.+.+|++|+|++|++.+..+..|+++.+|++|+|++|++.+.+... |.++.+|++|+|++|.|.+..+.. +.++.+|
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 3567888888888887777777888888888888888877644443 777888888888888887765554 6777888
Q ss_pred cEEEccCCcCccCCCchhcc-----------------------------------CCCCEEEecCccccccCchhhhh--
Q 043930 159 LYLDLRFNNFEGELPPELFQ-----------------------------------TGLDIIFLNHNWFRGSIPETIGE-- 201 (629)
Q Consensus 159 ~~L~Ls~n~l~~~ip~~~~~-----------------------------------~~L~~L~L~~n~l~~~~~~~~~~-- 201 (629)
++|+|++|++++..+..+.. .+|++|+|++|.+++.++..+..
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 88888888777544433321 45788888888777655444322
Q ss_pred --------------------------------------hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 202 --------------------------------------SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 202 --------------------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
.+|++|++++|++.+.++..|+++++|++|+|++|+|++..+
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 257778888888888788888888999999999999887777
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
..+. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++..+.+..+
T Consensus 317 ~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 317 NAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TTTT--TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hHhc--CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 7776 78889999999999887778888888999999999999988778888888999999999999988877778888
Q ss_pred CCCceecccCCccccc
Q 043930 324 RDDVYFEEKGNCLAEM 339 (629)
Q Consensus 324 ~~L~~L~l~~N~l~~~ 339 (629)
++|++|+|++|.|.+.
T Consensus 395 ~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CcccEEEccCCCcccC
Confidence 8999999999988754
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.4e-34 Score=329.24 Aligned_cols=254 Identities=28% Similarity=0.456 Sum_probs=235.0
Q ss_pred cEEEEEcCCCCccccCchhhhC--CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 85 FVAMIDLNKAEIAAHLPPEMGW--LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 85 ~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+|+.|+|++|++.+.++..+.. +.+|++|+|++|++.+.++..|.++.+|++|+|++|++++.++..+..+.+|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 7899999999998888887777 88999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930 163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG 240 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 240 (629)
|++|++++.++..+.. .+|++|+|++|.+++.++..++. .+|++|+|++|++.+.++..|+++.+|++|+|++|++.|
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 9999999889888876 89999999999999999988876 589999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCcEEEecCCcccccchHHhh-----------------------------------------------
Q 043930 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA----------------------------------------------- 273 (629)
Q Consensus 241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----------------------------------------------- 273 (629)
.++..+. .+.+|++|+|++|.+++.++..+.
T Consensus 529 ~~p~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 529 NIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp ECCGGGG--GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCCHHHc--CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 9999998 899999999999999877665443
Q ss_pred -----------------------cccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceec
Q 043930 274 -----------------------NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE 330 (629)
Q Consensus 274 -----------------------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 330 (629)
++.+|++|||++|++++.++..|.++.+|++|+|++|+|++.++..|.++++|++||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 246788999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccccc
Q 043930 331 EKGNCLAEME 340 (629)
Q Consensus 331 l~~N~l~~~~ 340 (629)
|++|.+++..
T Consensus 687 Ls~N~l~g~i 696 (768)
T 3rgz_A 687 LSSNKLDGRI 696 (768)
T ss_dssp CCSSCCEECC
T ss_pred CCCCcccCcC
Confidence 9999998543
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=6.3e-33 Score=300.40 Aligned_cols=278 Identities=17% Similarity=0.194 Sum_probs=232.2
Q ss_pred CcccEEEEEcCCCCccccC-chhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhh--hhCCCCC
Q 043930 82 QERFVAMIDLNKAEIAAHL-PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTV--ALTWKRN 158 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--l~~l~~L 158 (629)
.+.+|++|+|++|.+.+.+ ...|.++++|++|+|++|++.+..+..|+++.+|++|+|++|++++.+... +..+.+|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 3567999999999997555 567999999999999999999888899999999999999999998855554 8899999
Q ss_pred cEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-----------------------------------
Q 043930 159 LYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE----------------------------------- 201 (629)
Q Consensus 159 ~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~----------------------------------- 201 (629)
++|+|++|++++..+..++. .+|++|+|++|.+++..+..+..
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999666766443 89999999999999776655543
Q ss_pred hhhHHHHhcCCcccccCCcccc---------------------------------------CCCCCcEEEccCCcccccC
Q 043930 202 SLARYIVLSSNNFTGCLPRSIG---------------------------------------YMKELQEIILMENQLSGCL 242 (629)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~l~---------------------------------------~l~~L~~L~Ls~n~l~~~~ 242 (629)
.+|++|++++|++.+.++..|. .+.+|++|+|++|++.+.+
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 2577788888877653332221 1257899999999998877
Q ss_pred CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcC
Q 043930 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322 (629)
Q Consensus 243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 322 (629)
+..+. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|.++.+|++|+|++|+|+++....|.+
T Consensus 292 ~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 292 KSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred hhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 87777 8999999999999999888889999999999999999999888888999999999999999999998899999
Q ss_pred CCCCceecccCCccccccccCCC----CCCCCCCCCCCCCCCC
Q 043930 323 SRDDVYFEEKGNCLAEMEYQKLP----TECYPVVSKPVDCSKD 361 (629)
Q Consensus 323 l~~L~~L~l~~N~l~~~~~~~~~----~~c~~~~~~p~~Cs~~ 361 (629)
+.+|++|+|++|.|++.....+. .....+..+.+.|++.
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999976643322 2334667777778764
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=7.3e-33 Score=286.49 Aligned_cols=273 Identities=18% Similarity=0.209 Sum_probs=203.1
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCCCCCC-----CCCCCCcCceecCCCC----CCCcccEEEEEcCCCCccccCchhhhC
Q 043930 36 RMKMAYVGLQAFKKAIYSDPYNHTENWV-----GTDVCQYNGVLCDVFI----DNQERFVAMIDLNKAEIAAHLPPEMGW 106 (629)
Q Consensus 36 ~l~~~~~~l~~~~~~~~~~~~~~l~~~~-----~~~~c~~~g~~~~~~~----~~~~~~L~~L~L~~n~l~~~~p~~~~~ 106 (629)
.+.++..+|.+|+..+..+....+..|. ..++|.|.|+.|+... .....+|+.|+|++|+|. .++..+++
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 3455677899999988777766777783 5688999999986321 113467999999999997 57788889
Q ss_pred CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc---------
Q 043930 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF--------- 177 (629)
Q Consensus 107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~--------- 177 (629)
+.+|++|+|++|+|. .++..|+++.+|++|+|++|.|+ .++..+..+.+|++|+|++|++.+.++..+.
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 999999999999998 78888999999999999999998 5788899999999999999888888887664
Q ss_pred -cCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930 178 -QTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV 256 (629)
Q Consensus 178 -~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~ 256 (629)
..+|++|+|++|.|+ .++..|+++.+|++|+|++|.|+ .++..+. .+.+|++
T Consensus 181 ~l~~L~~L~L~~n~l~------------------------~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~--~l~~L~~ 233 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR------------------------SLPASIANLQNLKSLKIRNSPLS-ALGPAIH--HLPKLEE 233 (328)
T ss_dssp ESTTCCEEEEEEECCC------------------------CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG--GCTTCCE
T ss_pred cCCCCCEEECcCCCcC------------------------cchHhhcCCCCCCEEEccCCCCC-cCchhhc--cCCCCCE
Confidence 255666666666555 34445666667777777777776 3444454 5667777
Q ss_pred EEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
|+|++|++.+.++..|.++.+|++|+|++|.+.+.++..|.++.+|++|+|++|.+.+.++..|.++.+|+.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777766666666667777777777777766666666666777777777777777666667777777777777666555
Q ss_pred cc
Q 043930 337 AE 338 (629)
Q Consensus 337 ~~ 338 (629)
..
T Consensus 314 ~~ 315 (328)
T 4fcg_A 314 AQ 315 (328)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=5e-32 Score=311.29 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=215.3
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCCCCCCC--CCc------------CceecCCCCCCCcccEEEEEcCCCCccccCch
Q 043930 37 MKMAYVGLQAFKKAIYSDPYNHTENWVGTDV--CQY------------NGVLCDVFIDNQERFVAMIDLNKAEIAAHLPP 102 (629)
Q Consensus 37 l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~--c~~------------~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 102 (629)
...+..+|++|++.+....|.....|...+. |.| .||.|+. ..+|+.|+|++|++.|.++.
T Consensus 267 ~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-----~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-----NGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-----TSCEEEEECTTTCCEEEECG
T ss_pred chHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecC-----CCCEEEEECccCCCCCcCch
Confidence 3467889999999984332222222222344 999 9999974 36799999999999999999
Q ss_pred hhhCCcCCCEEEC-CCCCCCcc----------------------------------------------------------
Q 043930 103 EMGWLLDLIYFHA-NTNRLCGI---------------------------------------------------------- 123 (629)
Q Consensus 103 ~~~~l~~L~~L~L-~~n~l~~~---------------------------------------------------------- 123 (629)
+|++|++|++|+| ++|.+.|.
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 77654332
Q ss_pred ------------------ChhhhcCCCCCcEEEccCCcCCC-----------------Cchhhhh--CCCCCcEEEccCC
Q 043930 124 ------------------IPETFANMHRLEEFDVSNNRLVG-----------------PFPTVAL--TWKRNLYLDLRFN 166 (629)
Q Consensus 124 ------------------~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~l~--~l~~L~~L~Ls~n 166 (629)
++..|++|.+|++|+|++|.|++ .++..++ ++.+|++|+|++|
T Consensus 422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 67789999999999999999998 3788877 9999999999999
Q ss_pred cCccCCCchhcc-CCCCEEEecCcc-ccc-cCchhhhhh--------hhHHHHhcCCcccccCCc--cccCCCCCcEEEc
Q 043930 167 NFEGELPPELFQ-TGLDIIFLNHNW-FRG-SIPETIGES--------LARYIVLSSNNFTGCLPR--SIGYMKELQEIIL 233 (629)
Q Consensus 167 ~l~~~ip~~~~~-~~L~~L~L~~n~-l~~-~~~~~~~~~--------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L 233 (629)
++.+.++..+.. .+|++|+|++|. |++ .++..++.. +|++|+|++|++. .++. .|+++.+|++|+|
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 999999988877 899999999998 888 788877764 6999999999999 7887 8999999999999
Q ss_pred cCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccC-ccceecccccccccccccccCCC--CCcEEEecCC
Q 043930 234 MENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNN-IMRLDISDNMLTGFVSADICKLP--HLLNFTFSNN 310 (629)
Q Consensus 234 s~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N 310 (629)
++|+|+ .++ .+. .+.+|++|+|++|+|+ .++..|.++.+ |++|+|++|.|+ .++..+..+. +|+.|+|++|
T Consensus 581 s~N~l~-~lp-~~~--~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 581 VHNKVR-HLE-AFG--TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp TTSCCC-BCC-CCC--TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred CCCCcc-cch-hhc--CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 999998 777 565 7889999999999998 77778888888 888888888887 3455554443 2555555555
Q ss_pred ccCC
Q 043930 311 FFQG 314 (629)
Q Consensus 311 ~l~~ 314 (629)
.|.+
T Consensus 655 ~l~g 658 (876)
T 4ecn_A 655 KIGS 658 (876)
T ss_dssp CTTT
T ss_pred cCCC
Confidence 5544
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=3.5e-32 Score=296.44 Aligned_cols=250 Identities=14% Similarity=0.120 Sum_probs=125.0
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
.+|+.|+|++|+|..+....|.++.+|++|+|++|++.+.....|.++.+|++|+|++|.+.+.....|..+.+|++|+|
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 44555555555554433334445555555555555555444444555555555555555554444444455555555555
Q ss_pred cCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930 164 RFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG 240 (629)
Q Consensus 164 s~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 240 (629)
++|+++ .++...+. .+|++|+|++|.+.+.....+.. .+|++|++++|.+.+.+...+....+|++|+|++|+|+
T Consensus 160 ~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~- 237 (477)
T 2id5_A 160 EKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237 (477)
T ss_dssp ESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-
T ss_pred CCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-
Confidence 555554 23322222 45555555555554433333322 24555555555444444433333345555555555554
Q ss_pred cCC-cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhh
Q 043930 241 CLP-SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMEC 319 (629)
Q Consensus 241 ~~p-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 319 (629)
.++ ..+. .+.+|++|+|++|.|++.....|.++.+|++|+|++|+|.++....|.++.+|++|+|++|+|+++....
T Consensus 238 ~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 238 AVPYLAVR--HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp SCCHHHHT--TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccCHHHhc--CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 222 2232 4555555555555555444444555555555555555555555555555555555555555555555555
Q ss_pred hcCCCCCceecccCCccc
Q 043930 320 ISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 320 l~~l~~L~~L~l~~N~l~ 337 (629)
|..+.+|++|+|++|.|.
T Consensus 316 ~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLA 333 (477)
T ss_dssp BSCGGGCCEEECCSSCEE
T ss_pred cCCCcccCEEEccCCCcc
Confidence 555555555555555554
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8.9e-32 Score=293.28 Aligned_cols=310 Identities=15% Similarity=0.126 Sum_probs=259.7
Q ss_pred CCCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcC
Q 043930 13 KDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLN 92 (629)
Q Consensus 13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~ 92 (629)
...+|++.+ ..+++.|+|++|++..... + . + ..+.+|+.|+|+
T Consensus 22 ~l~~ip~~~--~~~l~~L~L~~n~l~~~~~-----------~------~--------~----------~~l~~L~~L~L~ 64 (477)
T 2id5_A 22 RFVAVPEGI--PTETRLLDLGKNRIKTLNQ-----------D------E--------F----------ASFPHLEELELN 64 (477)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSCCCEECT-----------T------T--------T----------TTCTTCCEEECT
T ss_pred CcCcCCCCC--CCCCcEEECCCCccceECH-----------h------H--------c----------cCCCCCCEEECC
Confidence 345677665 3588999999997644210 0 0 0 034679999999
Q ss_pred CCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCC
Q 043930 93 KAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGEL 172 (629)
Q Consensus 93 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~i 172 (629)
+|.|.++.+..|+++.+|++|+|++|++.+.....|.++.+|++|+|++|++.+.....|..+.+|++|+|++|++++..
T Consensus 65 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 144 (477)
T 2id5_A 65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS 144 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred CCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeC
Confidence 99999988999999999999999999999777777899999999999999999888888999999999999999998555
Q ss_pred Cchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCC
Q 043930 173 PPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250 (629)
Q Consensus 173 p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 250 (629)
...+.. .+|++|+|++|.+++.....+.. .+|++|+|++|.+.+.....|.++.+|++|+|++|.+.+.++..+. .
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~ 222 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--Y 222 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--T
T ss_pred hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc--c
Confidence 544444 89999999999999765555554 5899999999999988888899999999999999998878877776 5
Q ss_pred CCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceec
Q 043930 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFE 330 (629)
Q Consensus 251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 330 (629)
..+|++|+|++|+|++.....|.++.+|++|+|++|.|+++....|.++.+|++|+|++|+|.++....|.++.+|++|+
T Consensus 223 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 66999999999999976667899999999999999999988888899999999999999999999899999999999999
Q ss_pred ccCCccccccccCCC----CCCCCCCCCCCCCCCC
Q 043930 331 EKGNCLAEMEYQKLP----TECYPVVSKPVDCSKD 361 (629)
Q Consensus 331 l~~N~l~~~~~~~~~----~~c~~~~~~p~~Cs~~ 361 (629)
|++|.|+......+. .....+..+.+.|++.
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999999876543322 2334566777777753
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.7e-31 Score=300.89 Aligned_cols=228 Identities=15% Similarity=0.235 Sum_probs=157.5
Q ss_pred CcccEEEEEcCCCCcccc-----------------Cchhhh--CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930 82 QERFVAMIDLNKAEIAAH-----------------LPPEMG--WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN 142 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 142 (629)
.+.+|++|+|++|+|.+. ++..++ ++++|++|+|++|++.+.++..|+++++|++|+|++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 567789999999998885 888888 8999999999999888888888899999999999999
Q ss_pred c-CCC-CchhhhhCC------CCCcEEEccCCcCccCCCc--hhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhc
Q 043930 143 R-LVG-PFPTVALTW------KRNLYLDLRFNNFEGELPP--ELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLS 210 (629)
Q Consensus 143 ~-l~~-~~~~~l~~l------~~L~~L~Ls~n~l~~~ip~--~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~ 210 (629)
+ +++ .++..+..+ .+|++|+|++|+++ .++. .+.. .+|++|+|++|.++|.++ .++. .+|++|+|+
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 8 877 777777766 88888888888888 7877 5555 788888888888887777 4443 467777777
Q ss_pred CCcccccCCccccCCCC-CcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh-------cccCcccee
Q 043930 211 SNNFTGCLPRSIGYMKE-LQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA-------NLNNIMRLD 282 (629)
Q Consensus 211 ~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~ 282 (629)
+|++. .++..|+++.+ |++|+|++|.|+ .++..+....+.+|++|+|++|+|++.++..|. .+.+|++|+
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 77777 66666777776 777777777776 566555421223555555555555554444444 344444555
Q ss_pred cccccccccccccccCCCCCcEEEecCCccC
Q 043930 283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313 (629)
Q Consensus 283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 313 (629)
|++|.|+++....+..+.+|++|+|++|+|+
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 5554444322222333444444444444443
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.6e-30 Score=286.95 Aligned_cols=273 Identities=16% Similarity=0.147 Sum_probs=160.3
Q ss_pred cEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEcc
Q 043930 85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLR 164 (629)
Q Consensus 85 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 164 (629)
.|+.|+|++|++.+.....|+++++|++|+|++|+++ .++..|.++.+|++|+|++|.+.+..+..+..+.+|++|+|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 5777777777777666666777777777777777776 455566777777777777777766555566666666666666
Q ss_pred CCcCccCCCchhcc--CCCCEEEecCccccccC--chhhhh-hhhHHHHhcCCcccccCCccc-----------------
Q 043930 165 FNNFEGELPPELFQ--TGLDIIFLNHNWFRGSI--PETIGE-SLARYIVLSSNNFTGCLPRSI----------------- 222 (629)
Q Consensus 165 ~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~--~~~~~~-~~L~~L~l~~n~l~~~~~~~l----------------- 222 (629)
+|.+.+.++...+. .+|++|+|++|.+++.. ...++. .+|++|++++|.+.+..+..|
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 66665555444332 55666666665555432 222222 344455555554444444444
Q ss_pred --------cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc---chHHhhcccCccceeccccccccc
Q 043930 223 --------GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS---VPQSFANLNNIMRLDISDNMLTGF 291 (629)
Q Consensus 223 --------~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~ 291 (629)
.++.+|++|+|++|.+.+..+..+. .+.+|++|+|++|+|++. ....|..+.+|++|+|++|.++++
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD--GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT--TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHh--CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 4445555555555555444444444 455566666666655542 113455566666666666666655
Q ss_pred ccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccC----CCCCCCCCCCCCCCCCCC
Q 043930 292 VSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQK----LPTECYPVVSKPVDCSKD 361 (629)
Q Consensus 292 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~----~~~~c~~~~~~p~~Cs~~ 361 (629)
.+..|.++.+|++|+|++|++++...+.+.++..| +|++++|.|++..... .......+..+++.|++.
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 55566666666666666666666666666666666 6666666666443221 112344566677777653
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.2e-30 Score=289.48 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=121.5
Q ss_pred hhhHHHHhcCCcccccCC-ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc-cchHHhhcccCcc
Q 043930 202 SLARYIVLSSNNFTGCLP-RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG-SVPQSFANLNNIM 279 (629)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~ 279 (629)
.+|++|++++|.+.+... ..|.++.+|++|+|++|.+.+.++..+. .+.+|++|+|++|++++ .++..|.++.+|+
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL--GLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc--CCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 346666666666665555 5667777778888888877766666666 67888888888888876 3677788888899
Q ss_pred ceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccccc--CCC--CCCCCCCCCC
Q 043930 280 RLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQ--KLP--TECYPVVSKP 355 (629)
Q Consensus 280 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~--~~~--~~c~~~~~~p 355 (629)
+|+|++|.|++..+..|.++.+|++|+|++|++++..+..|.++.+|++|+|++|.|+..... ... .....+..++
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 999999988888778888899999999999999988888899999999999999998865532 221 2344667788
Q ss_pred CCCCCC
Q 043930 356 VDCSKD 361 (629)
Q Consensus 356 ~~Cs~~ 361 (629)
+.|++.
T Consensus 557 ~~c~c~ 562 (606)
T 3vq2_A 557 VACICE 562 (606)
T ss_dssp CCCSST
T ss_pred cccCCc
Confidence 888765
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.6e-30 Score=265.60 Aligned_cols=229 Identities=21% Similarity=0.291 Sum_probs=212.7
Q ss_pred cCCCEEECCCCCCCc--cChhhhcCCCCCcEEEccC-CcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCE
Q 043930 108 LDLIYFHANTNRLCG--IIPETFANMHRLEEFDVSN-NRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDI 183 (629)
Q Consensus 108 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~ 183 (629)
.+|++|+|++|++.+ .++..|.++.+|++|+|++ |.+.+.++..|.++.+|++|+|++|+|++.++..+.. .+|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8899999999999999995 9999989999999999999999999999888888776 99999
Q ss_pred EEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCC-CCcEEEccCCcccccCCcccccCCCCCCcEEEecC
Q 043930 184 IFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMK-ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRS 261 (629)
Q Consensus 184 L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~ 261 (629)
|+|++|.|++.++..+.. .+|++|+|++|++++.++..|+++. +|++|+|++|++++.++..+. .+. |++|+|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~--~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG--GCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh--CCc-ccEEECcC
Confidence 999999999999888876 5899999999999999999999998 999999999999999998887 565 99999999
Q ss_pred CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930 262 NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 262 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
|+|++.++..|.++.+|++|+|++|.|++.+.. +..+.+|++|+|++|+|++..+..|..+.+|++|+|++|.|++..
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 999999999999999999999999999976655 888999999999999999989999999999999999999998543
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=4.4e-30 Score=272.40 Aligned_cols=294 Identities=16% Similarity=0.090 Sum_probs=213.4
Q ss_pred hhcCCCcccccchhhhHHHHHH-HHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCc
Q 043930 23 DQYDLKDKTFESHRMKMAYVGL-QAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLP 101 (629)
Q Consensus 23 ~l~~L~~L~ls~~~l~~~~~~l-~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 101 (629)
.+.+++.|+++++.+......+ ..++... .. ....|.+.++....+ ..+.+|+.|+|++|++.+..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~---------~L-~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~ 110 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVE---------LL-NLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPP 110 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCS---------EE-ECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCc---------EE-ECCCCcccccChhhc--cCCCCcCEEECCCCCCCcCCH
Confidence 5688899999988776543322 2222111 10 112233333322111 246789999999999999888
Q ss_pred hhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCC
Q 043930 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGL 181 (629)
Q Consensus 102 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L 181 (629)
..|+++.+|++|+|++|++.+.....|.++.+|++|+|++|.|.+.....+..+.+|++|+|++|++++ +... ...+|
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~-~l~~L 188 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLS-LIPSL 188 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGG-GCTTC
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cccc-ccccc
Confidence 889999999999999999997666667999999999999999998777889999999999999999984 3211 11455
Q ss_pred CEEEecCcccccc------------------CchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 182 DIIFLNHNWFRGS------------------IPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 182 ~~L~L~~n~l~~~------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
++|++++|.+++. ++.. ...+|++|++++|.+++. ..|.++.+|++|+|++|.|++..+
T Consensus 189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp SEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred ceeecccccccccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 5555555544421 1111 113577788888887754 567888888888888888887767
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
..+. .+.+|++|+|++|+|++ +...+..+++|++|+|++|+|.+ ++..+..+.+|++|+|++|.|+++. +..+
T Consensus 266 ~~~~--~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~ 338 (390)
T 3o6n_A 266 HPFV--KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTH 338 (390)
T ss_dssp GGGT--TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTT
T ss_pred hHcc--ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC---chhh
Confidence 7776 78888888888888874 44556678888888998888885 4556777888899999998888763 6677
Q ss_pred CCCceecccCCcccccc
Q 043930 324 RDDVYFEEKGNCLAEME 340 (629)
Q Consensus 324 ~~L~~L~l~~N~l~~~~ 340 (629)
.+|++|++++|.|.+..
T Consensus 339 ~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CCCSEEECCSSCEEHHH
T ss_pred ccCCEEEcCCCCccchh
Confidence 88899999999887654
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.5e-30 Score=288.33 Aligned_cols=255 Identities=16% Similarity=0.096 Sum_probs=168.2
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
.+.+|++|+|++|++.+..+..|+++++|++|+|++|++.+.....|.++.+|++|+|++|++.+.....+..+.+|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 34567777777777766666667777777777777777765545556667777777777777665332334446677777
Q ss_pred EccCCcCccCCCchhcc-CCCC--EEEecCccccccCchhhhh-------------------------------------
Q 043930 162 DLRFNNFEGELPPELFQ-TGLD--IIFLNHNWFRGSIPETIGE------------------------------------- 201 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~-~~L~--~L~L~~n~l~~~~~~~~~~------------------------------------- 201 (629)
+|++|++++..+..+.. .+|+ +|++++|.+.+..+..+..
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 77777666333333333 5566 6666666665544333221
Q ss_pred ---------------hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930 202 ---------------SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266 (629)
Q Consensus 202 ---------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~ 266 (629)
..|++|++++|.+.+.....|+++++|++|+|++|+++ .++..+. .+.+|++|+|++|++++
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~--~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV--GLSTLKKLVLSANKFEN 315 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC--SCTTCCEEECTTCCCSB
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhc--ccccCCEEECccCCcCc
Confidence 14566677777777666666777888888888888877 6666665 67788888888888876
Q ss_pred cchHHhhcccCccceecccccccccccc-cccCCCCCcEEEecCCccCCcc--hhhhcCCCCCceecccCCccccc
Q 043930 267 SVPQSFANLNNIMRLDISDNMLTGFVSA-DICKLPHLLNFTFSNNFFQGMA--MECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 267 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~--~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
..+..+.++.+|++|+|++|.+.+.+.. .+.++.+|++|+|++|.+.+.. ...+.++.+|++|++++|.+.+.
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 391 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC
Confidence 6666777777777777777777644433 3666777777777777776654 45566677777777777766544
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-29 Score=291.27 Aligned_cols=312 Identities=17% Similarity=0.179 Sum_probs=198.2
Q ss_pred CCCCCcchhhhcCCCcccccchh-hhH--HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEE
Q 043930 14 DGKLPNDFEDQYDLKDKTFESHR-MKM--AYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMID 90 (629)
Q Consensus 14 ~~~i~~~l~~l~~L~~L~ls~~~-l~~--~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~ 90 (629)
.+.++..|.++.+|++|++++|+ +.. ....+..+...+ .....+..+ ....|.+..+... .....+.+|+.|+
T Consensus 504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~--~~l~~L~~L-~Ls~N~L~~ip~~-~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE--DTGPKIQIF-YMGYNNLEEFPAS-ASLQKMVKLGLLD 579 (876)
T ss_dssp CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCT--TTTTTCCEE-ECCSSCCCBCCCH-HHHTTCTTCCEEE
T ss_pred CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcc--cccCCccEE-EeeCCcCCccCCh-hhhhcCCCCCEEE
Confidence 57788889999999999999997 654 223333333110 000011110 1112222211100 0011355677777
Q ss_pred cCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCC-CcEEEccCCcCCCCchhhhhCCCC--CcEEEccCCc
Q 043930 91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHR-LEEFDVSNNRLVGPFPTVALTWKR--NLYLDLRFNN 167 (629)
Q Consensus 91 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~Ls~n~ 167 (629)
|++|+|. .++ .|+++.+|++|+|++|+|. .++..|.++.+ |++|+|++|.|+ .++..+..+.. |++|+|++|+
T Consensus 580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence 7777776 555 6777777777777777777 56666777777 777777777777 45655555543 7777777777
Q ss_pred CccCCCchh---c--c-CCCCEEEecCccccccCchhhhh--hhhHHHHhcCCcccccCCccccC--------CCCCcEE
Q 043930 168 FEGELPPEL---F--Q-TGLDIIFLNHNWFRGSIPETIGE--SLARYIVLSSNNFTGCLPRSIGY--------MKELQEI 231 (629)
Q Consensus 168 l~~~ip~~~---~--~-~~L~~L~L~~n~l~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~l~~--------l~~L~~L 231 (629)
|.+.++... . . .+|++|+|++|.|+ .++..+.. .+|++|+|++|+|. .++..+.. |++|++|
T Consensus 656 l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L 733 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTI 733 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEE
T ss_pred CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEE
Confidence 775544222 1 1 46777777777777 55555442 46777888888777 44443332 2278888
Q ss_pred EccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccc------ccccccccccccCCCCCcEE
Q 043930 232 ILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD------NMLTGFVSADICKLPHLLNF 305 (629)
Q Consensus 232 ~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~l~~l~~L~~L 305 (629)
+|++|+|+ .++..++...+.+|++|+|++|+|++ ++..+.++.+|++|+|++ |++.+.++..|.++.+|++|
T Consensus 734 ~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp ECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 88888777 66666542257778888888888875 666777788888887765 66677777777778888888
Q ss_pred EecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930 306 TFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
+|++|.|. .++..+. ++|+.|+|++|.|..+.
T Consensus 812 ~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 812 QIGSNDIR-KVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp ECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred ECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccC
Confidence 88888873 3444333 57888888888776554
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=9.9e-29 Score=255.86 Aligned_cols=264 Identities=19% Similarity=0.218 Sum_probs=176.7
Q ss_pred CCCcCceecCCCCC-----CCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccC
Q 043930 67 VCQYNGVLCDVFID-----NQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSN 141 (629)
Q Consensus 67 ~c~~~g~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 141 (629)
.|.+..+.|..... .....|+.|+|++|+|.+.....|+++.+|++|+|++|++.+..+..|.++.+|++|+|++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 34555555543211 1234677778888777776666777777888888888777776677777777888888887
Q ss_pred CcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc-c-CCCCEEEecCccccc--cCchhhhh-hhhHHHHhcCCcccc
Q 043930 142 NRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRG--SIPETIGE-SLARYIVLSSNNFTG 216 (629)
Q Consensus 142 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~--~~~~~~~~-~~L~~L~l~~n~l~~ 216 (629)
|+|+. ++..+. .+|++|+|++|+++ .+....+ . .+|++|+|++|.++. .....+.. .+|++|++++|++.+
T Consensus 110 n~l~~-l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 110 NQLKE-LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SCCSB-CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CcCCc-cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 77764 333332 67778888877777 3433333 2 777788887777753 33444443 467777777777764
Q ss_pred cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccc
Q 043930 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI 296 (629)
Q Consensus 217 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 296 (629)
++..+. .+|++|+|++|+|++..+..+. .+.+|++|+|++|+|++.....|..+.+|++|+|++|.|+. ++..+
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l 259 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL 259 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhh
Confidence 333332 6777777777777766566665 67777777777777776666667777777777777777773 55667
Q ss_pred cCCCCCcEEEecCCccCCcchhhhcC------CCCCceecccCCcccccc
Q 043930 297 CKLPHLLNFTFSNNFFQGMAMECISG------SRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 297 ~~l~~L~~L~L~~N~l~~~~~~~l~~------l~~L~~L~l~~N~l~~~~ 340 (629)
..+.+|++|+|++|.|+++....|.. ...|+.|++.+|.+....
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 77777777777777777766655543 256677777777766433
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.1e-30 Score=281.33 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=67.8
Q ss_pred hHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc--cCCcccccCCCCCCcEEEecCCcccccchH-HhhcccCccc
Q 043930 204 ARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG--CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ-SFANLNNIMR 280 (629)
Q Consensus 204 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~ 280 (629)
|++|++++|++++.++..|+++.+|++|+|++|+|++ .++..+. .+.+|++|+|++|++++.++. .|..+.+|++
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh--hCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 3444444444444444444444444444444444442 2222232 344444444444444432222 1333344444
Q ss_pred eecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccCCC----CCCCCCCCCCC
Q 043930 281 LDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLP----TECYPVVSKPV 356 (629)
Q Consensus 281 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~----~~c~~~~~~p~ 356 (629)
|+|++|.|++.++..+. .+|++|+|++|+|+.+ +..+..+.+|++|+|++|.|++.....+. ........+.+
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccccc-chhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 44444444333222221 4555555555555533 33344666777777777766654432111 12234455556
Q ss_pred CCCC
Q 043930 357 DCSK 360 (629)
Q Consensus 357 ~Cs~ 360 (629)
.|++
T Consensus 481 ~c~c 484 (520)
T 2z7x_B 481 DCSC 484 (520)
T ss_dssp CCCH
T ss_pred cccC
Confidence 6654
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.9e-29 Score=258.44 Aligned_cols=263 Identities=18% Similarity=0.245 Sum_probs=212.2
Q ss_pred CCcCceecCCCC-----CCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930 68 CQYNGVLCDVFI-----DNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN 142 (629)
Q Consensus 68 c~~~g~~~~~~~-----~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 142 (629)
|.+..+.|.... .....+|+.|+|++|+|.+..+..|.++.+|++|+|++|++.+..+..|.++.+|++|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 556666665321 113457899999999998887888999999999999999999888889999999999999999
Q ss_pred cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccc--cCchhhhhhhhHHHHhcCCcccccC
Q 043930 143 RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRG--SIPETIGESLARYIVLSSNNFTGCL 218 (629)
Q Consensus 143 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~--~~~~~~~~~~L~~L~l~~n~l~~~~ 218 (629)
.++. ++..+. .+|++|+|++|+++ .++...+. .+|++|+|++|.++. .....+...+|++|++++|++++ +
T Consensus 113 ~l~~-l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 113 HLVE-IPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-I 187 (332)
T ss_dssp CCCS-CCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-C
T ss_pred cCCc-cCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-c
Confidence 9885 444433 78999999999998 55555443 899999999999863 45555555589999999999885 4
Q ss_pred CccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC
Q 043930 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK 298 (629)
Q Consensus 219 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 298 (629)
+..+. .+|++|+|++|.+++.....+. .+.+|++|+|++|+|++.....|..+.+|++|+|++|+|+ .++..+.+
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 44443 6899999999999866666776 7899999999999999877778899999999999999998 46777889
Q ss_pred CCCCcEEEecCCccCCcchhhhcCC------CCCceecccCCcccccc
Q 043930 299 LPHLLNFTFSNNFFQGMAMECISGS------RDDVYFEEKGNCLAEME 340 (629)
Q Consensus 299 l~~L~~L~L~~N~l~~~~~~~l~~l------~~L~~L~l~~N~l~~~~ 340 (629)
+.+|++|+|++|.|+++..+.|..+ ..|+.|++.+|.+....
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 9999999999999998877766653 56889999999887443
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.4e-30 Score=283.86 Aligned_cols=251 Identities=15% Similarity=0.133 Sum_probs=194.0
Q ss_pred CcccEEEEEcCCCCccc-cCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCC--cEEEccCCcC--CCCchhhhhCC-
Q 043930 82 QERFVAMIDLNKAEIAA-HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRL--EEFDVSNNRL--VGPFPTVALTW- 155 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~Ls~n~l--~~~~~~~l~~l- 155 (629)
.+.+|++|+|++|.|.+ .++..|+++++|++|+|++|+|.+ ..|..+.+| ++|+|++|.+ .+..+..+..+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccc
Confidence 45667888888888776 356777888888888888887765 345556666 7777777666 33333333321
Q ss_pred --------------------------------------------------------------------------------
Q 043930 156 -------------------------------------------------------------------------------- 155 (629)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (629)
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence
Q ss_pred --CCCcEEEccCCcCccCCCchh-----------------------------------------------------cc-C
Q 043930 156 --KRNLYLDLRFNNFEGELPPEL-----------------------------------------------------FQ-T 179 (629)
Q Consensus 156 --~~L~~L~Ls~n~l~~~ip~~~-----------------------------------------------------~~-~ 179 (629)
.+|++|+|++|+++|.++..+ .. .
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 256777777777665555443 12 6
Q ss_pred CCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccc--cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930 180 GLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTG--CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV 256 (629)
Q Consensus 180 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~ 256 (629)
+|++|+|++|.+++.++..++. .+|++|++++|++++ .++..|+++.+|++|+|++|.+.+.++.... ..+.+|++
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~-~~l~~L~~ 403 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC-SWTKSLLS 403 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC-CCCTTCCE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh-ccCccCCE
Confidence 7899999999999877777655 579999999999996 4567799999999999999999975766532 17899999
Q ss_pred EEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
|+|++|+|++.++..+. .+|++|+|++|+|+ .++..+.++.+|++|+|++|+|+++....|..+.+|++|++++|.|
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 99999999877665443 79999999999999 4677777999999999999999987666789999999999999999
Q ss_pred ccc
Q 043930 337 AEM 339 (629)
Q Consensus 337 ~~~ 339 (629)
.+.
T Consensus 481 ~c~ 483 (520)
T 2z7x_B 481 DCS 483 (520)
T ss_dssp CCC
T ss_pred ccc
Confidence 863
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=4.1e-29 Score=260.51 Aligned_cols=289 Identities=15% Similarity=0.201 Sum_probs=192.9
Q ss_pred chhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCcccc
Q 043930 20 DFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAH 99 (629)
Q Consensus 20 ~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~ 99 (629)
.+..+.+|++|+++++++.... ++..+. .+... ....|.+.++.. ...+.+|+.|+|++|.+.+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~-~~~~~~---------~L~~L-~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQ-GIEYLT---------NLEYL-NLNGNQITDISP----LSNLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCT-TGGGCT---------TCCEE-ECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC
T ss_pred cchhcccccEEEEeCCccccch-hhhhcC---------CccEE-EccCCccccchh----hhcCCcCCEEEccCCcccCc
Confidence 4567788888888887765421 111111 11110 111222222221 12456788888888887663
Q ss_pred CchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccC
Q 043930 100 LPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQT 179 (629)
Q Consensus 100 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 179 (629)
..+.++.+|++|+|++|++.+.. . +.++.+|++|+|++|.....+.. +..+.+|++|+|++|++. .+.......
T Consensus 104 --~~~~~l~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~~l~ 177 (347)
T 4fmz_A 104 --SALQNLTNLRELYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK-DVTPIANLT 177 (347)
T ss_dssp --GGGTTCTTCSEEECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGGGCT
T ss_pred --hHHcCCCcCCEEECcCCcccCch-h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC-CchhhccCC
Confidence 46788888888888888887542 2 77888888888888865554433 777888888888888876 443322227
Q ss_pred CCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEe
Q 043930 180 GLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDI 259 (629)
Q Consensus 180 ~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~L 259 (629)
+|++|+|++|.+.+.. ......+|++|++++|.+.+... +..+.+|++|+|++|++++. .. +. .+.+|++|+|
T Consensus 178 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~--~l~~L~~L~l 250 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LA--NLSQLTWLEI 250 (347)
T ss_dssp TCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GT--TCTTCCEEEC
T ss_pred CCCEEEccCCcccccc-cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hh--cCCCCCEEEC
Confidence 7888888888877432 22233567778888887775433 67777888888888887743 22 43 6778888888
Q ss_pred cCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 260 RSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 260 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
++|.+++. ..+..+.+|++|+|++|.|++. ..+..+.+|++|+|++|.+.+.....+.++.+|++|++++|.+++.
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 88877753 4577777888888888877764 4567777888888888888777777777788888888888877765
Q ss_pred c
Q 043930 340 E 340 (629)
Q Consensus 340 ~ 340 (629)
.
T Consensus 327 ~ 327 (347)
T 4fmz_A 327 R 327 (347)
T ss_dssp G
T ss_pred c
Confidence 3
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.1e-29 Score=283.61 Aligned_cols=279 Identities=13% Similarity=0.162 Sum_probs=210.2
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCc--cChhhhcCC--CCCcEEEccCCcCCCCchhhhhCCCC
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCG--IIPETFANM--HRLEEFDVSNNRLVGPFPTVALTWKR 157 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~l~~l~~ 157 (629)
.+.+|+.|+|++|.+.+.....|..+.+|++|+|++|.+.. .....|..+ .+|++|+|++|++.+..+..+..+.+
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 45678888888888888777788888888888888886542 122233332 57888888888888877778888889
Q ss_pred CcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccc--ccCCccccCCCCCcEEE
Q 043930 158 NLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFT--GCLPRSIGYMKELQEII 232 (629)
Q Consensus 158 L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~ 232 (629)
|++|+|++|++++.++...+. .+|++|+|++|.+.+.....+.. ..|++|++++|.+. +.++..|+++.+|++|+
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~ 486 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEE
Confidence 999999999888767654444 78899999998887666655554 47888888888876 45677788888888888
Q ss_pred ccCCcccccCCcccccCCCCCCcEEEecCCcccccch--------HHhhcccCccceecccccccccccccccCCCCCcE
Q 043930 233 LMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVP--------QSFANLNNIMRLDISDNMLTGFVSADICKLPHLLN 304 (629)
Q Consensus 233 Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~ 304 (629)
|++|+|++.....+. .+.+|++|+|++|+|++... ..|.++.+|++|+|++|+|+.+....|.++.+|++
T Consensus 487 Ls~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 487 LSNNNIANINDDMLE--GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp CCSSCCCCCCTTTTT--TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCcCChhhhc--cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 888888855555565 78888888888888875321 23677888888888888888655556888888888
Q ss_pred EEecCCccCCcchhhhcCCCCCceecccCCccccccccC-----CCCCCCCCCCCCCCCCCCC
Q 043930 305 FTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQK-----LPTECYPVVSKPVDCSKDE 362 (629)
Q Consensus 305 L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-----~~~~c~~~~~~p~~Cs~~~ 362 (629)
|+|++|+|+++....|.++.+|++|+|++|.|+...... .......+..+++.|+|..
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 888888888887777888888888888888887655321 2233446667788887653
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.9e-29 Score=258.88 Aligned_cols=246 Identities=17% Similarity=0.165 Sum_probs=209.4
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
.+.+|+.|+|++|+|.+..+..|+++.+|++|+|++|+++. ++..+. .+|++|+|++|.+++.....+.++.+|++|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 46789999999999999889999999999999999999984 444333 799999999999999888889999999999
Q ss_pred EccCCcCcc--CCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930 162 DLRFNNFEG--ELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL 238 (629)
Q Consensus 162 ~Ls~n~l~~--~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 238 (629)
+|++|+++. .....+.. .+|++|+|++|.+++ ++..+. .+|++|++++|++.+.....|.++.+|++|+|++|.|
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 999999963 33444443 899999999999984 444443 6899999999999988888999999999999999999
Q ss_pred cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC------CCCCcEEEecCCcc
Q 043930 239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK------LPHLLNFTFSNNFF 312 (629)
Q Consensus 239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~L~~N~l 312 (629)
++.....+. .+.+|++|+|++|+|+ .++.++..+.+|++|+|++|.|+++....|+. ...|+.|+|++|.+
T Consensus 229 ~~~~~~~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 229 SAVDNGSLA--NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CEECTTTGG--GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ceeChhhcc--CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 977666776 7899999999999999 77788999999999999999999877666754 37899999999998
Q ss_pred CC--cchhhhcCCCCCceecccCCc
Q 043930 313 QG--MAMECISGSRDDVYFEEKGNC 335 (629)
Q Consensus 313 ~~--~~~~~l~~l~~L~~L~l~~N~ 335 (629)
.. +....|..+..|+.|+|++|+
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccCccccccccceeEEEecccC
Confidence 65 556788899999999999985
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.8e-29 Score=266.18 Aligned_cols=270 Identities=17% Similarity=0.171 Sum_probs=172.5
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+.+++.|++++|.+...-...|.++++|++|+|++|++.+.....|.++.+|++|+|++|.+.+..+..|.++.+|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45566666666666554444456666667777766666655555666666666777766666665555666666666666
Q ss_pred ccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccC---------------
Q 043930 163 LRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGY--------------- 224 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~--------------- 224 (629)
|++|+|+ .++..++. .+|++|+|++|.+++.....+.. .+|++|++++|.+++.....+.+
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 6666666 55555432 66666666666666554444443 45666666666655431111111
Q ss_pred ----------------------CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcccee
Q 043930 225 ----------------------MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282 (629)
Q Consensus 225 ----------------------l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 282 (629)
+.+|++|+|++|++++. ..+. .+.+|++|+|++|.|++..+..|.++.+|++|+
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHc--CCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 13455666666666532 2343 678888888888888877777888888888888
Q ss_pred cccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccCCCC-CCCCCCCCCCCCC
Q 043930 283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPT-ECYPVVSKPVDCS 359 (629)
Q Consensus 283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-~c~~~~~~p~~Cs 359 (629)
|++|+|+++ ...+..+.+|++|+|++|++.++. ..+..+.+|++|+|++|.|+...+..... ....+..+.+.|+
T Consensus 279 L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 279 ISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVE-RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCG-GGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCCcCccc-CcccCCCCCCCEEECCCCcceecC-ccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 888888763 455667888888888888887653 34667788888888888888765443322 1224444555554
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.5e-29 Score=260.62 Aligned_cols=246 Identities=16% Similarity=0.146 Sum_probs=209.4
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
.+.+|+.|+|++|+|.+..+..|+++.+|++|+|++|++.. ++..+. .+|++|+|++|+|++.....+.++.+|++|
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 152 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCI 152 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEE
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEE
Confidence 56789999999999999889999999999999999999984 444433 799999999999998777779999999999
Q ss_pred EccCCcCcc--CCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccc
Q 043930 162 DLRFNNFEG--ELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239 (629)
Q Consensus 162 ~Ls~n~l~~--~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 239 (629)
+|++|+++. .....+...+|++|+|++|.+++ ++..+. .+|++|++++|.+.+.....|.++.+|++|+|++|+|+
T Consensus 153 ~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp ECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred ECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 999999963 33333333599999999999985 454444 68999999999999888889999999999999999999
Q ss_pred ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC------CCCCcEEEecCCccC
Q 043930 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK------LPHLLNFTFSNNFFQ 313 (629)
Q Consensus 240 ~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~------l~~L~~L~L~~N~l~ 313 (629)
+.....+. .+.+|++|+|++|+|+ .++..+..+.+|++|+|++|.|+++....|+. ..+|+.|+|++|.+.
T Consensus 231 ~~~~~~~~--~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 231 MIENGSLS--FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCTTGGG--GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCChhHhh--CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 76666676 7999999999999999 77888999999999999999999877666665 367999999999987
Q ss_pred --CcchhhhcCCCCCceecccCCc
Q 043930 314 --GMAMECISGSRDDVYFEEKGNC 335 (629)
Q Consensus 314 --~~~~~~l~~l~~L~~L~l~~N~ 335 (629)
++....|..+.+|+.|++++|+
T Consensus 308 ~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 308 YWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccCcccccccchhhhhhccccc
Confidence 6677889999999999999885
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=3.6e-29 Score=280.18 Aligned_cols=251 Identities=18% Similarity=0.168 Sum_probs=138.7
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+.+++.|++++|.+..+....|.++.+|++|+|++|.|.+.....|.++.+|++|+|++|.|.+..+..|.++.+|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34456666666666554445556666666666666666655555666666666666666666665555556666666666
Q ss_pred ccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCC--------------
Q 043930 163 LRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYM-------------- 225 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l-------------- 225 (629)
|++|.|+ .++..+|. .+|++|+|++|.|++..+..++. .+|++|+|++|.+.+.....+.++
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 6666665 44444432 56666666666666555544443 355666666655553311111110
Q ss_pred -----------------------CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcccee
Q 043930 226 -----------------------KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLD 282 (629)
Q Consensus 226 -----------------------~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 282 (629)
.+|++|+|++|.|++. ..+. .+.+|++|+|++|.|++.++..|.++.+|++|+
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhc--cCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 1244444444444321 2233 456666666666666655566666666666666
Q ss_pred cccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930 283 ISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 283 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
|++|.|+++ +..+..+.+|++|+|++|.|.++ ...+..+.+|++|+|++|.|....
T Consensus 285 Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 285 ISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC
Confidence 666666652 34445566666666666666543 233445555566666665555443
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=263.61 Aligned_cols=272 Identities=16% Similarity=0.188 Sum_probs=220.5
Q ss_pred CCCCCCcCceecCCCC-------CCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcE
Q 043930 64 GTDVCQYNGVLCDVFI-------DNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEE 136 (629)
Q Consensus 64 ~~~~c~~~g~~~~~~~-------~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 136 (629)
....|.|.++ |+... .....+|+.|+|++|+|.+.....|.++.+|++|+|++|++.+..+..|.++.+|++
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3456777766 54321 113457999999999999877778999999999999999999888888999999999
Q ss_pred EEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCc-hhcc--CCCCEEEecCcc-ccccCchhhhh-hhhHHHHhcC
Q 043930 137 FDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPP-ELFQ--TGLDIIFLNHNW-FRGSIPETIGE-SLARYIVLSS 211 (629)
Q Consensus 137 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~-~~~~--~~L~~L~L~~n~-l~~~~~~~~~~-~~L~~L~l~~ 211 (629)
|+|++|+|++.....+.++.+|++|+|++|+++ .++. ..+. .+|++|+|++|. +++.....+.. .+|++|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999999999866667899999999999999998 6665 3333 899999999994 66554555554 5899999999
Q ss_pred CcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh---cccCccceecccccc
Q 043930 212 NNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA---NLNNIMRLDISDNML 288 (629)
Q Consensus 212 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l 288 (629)
|++.+..+..|+++.+|++|+|++|.++ .++..+. ..+.+|++|+|++|++++.....+. .+..|+.++|++|.+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV-DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH-HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCcCccCHHHHhccccCCeecCCCCccc-cchhhhh-hhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 9999888899999999999999999987 4444433 1588999999999999875443332 356677888888877
Q ss_pred ccc----ccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 289 TGF----VSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 289 ~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
.+. ++..+.++.+|++|+|++|+|+++....|.++++|++|+|++|.+.+.
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 653 556788999999999999999987777778999999999999998754
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=9.2e-29 Score=287.76 Aligned_cols=256 Identities=17% Similarity=0.188 Sum_probs=197.1
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhh--hcCCCCCcEEEccCCcCCCCch-hhhhCCCCC
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPET--FANMHRLEEFDVSNNRLVGPFP-TVALTWKRN 158 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L 158 (629)
.+.+|+.|+|++|+|.+..+..|+++.+|++|+|++|++.+.+... |.++.+|++|+|++|.+.+... ..|.++.+|
T Consensus 71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 4677889999999988888888889999999999999888755444 8888899999999998877543 568888999
Q ss_pred cEEEccCCcCccCCCchhcc---CCCCEEEecCccccccCchhhhh-------hhhHHHHhcCCcccccCCcccc-----
Q 043930 159 LYLDLRFNNFEGELPPELFQ---TGLDIIFLNHNWFRGSIPETIGE-------SLARYIVLSSNNFTGCLPRSIG----- 223 (629)
Q Consensus 159 ~~L~Ls~n~l~~~ip~~~~~---~~L~~L~L~~n~l~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~l~----- 223 (629)
++|+|++|.|++.....+.. .+|++|+|++|.+.+.++..++. ..|++|++++|.+.+.+...|.
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 99999999888666655543 67888888888877665543322 2377777777766544332222
Q ss_pred -------------------------------C--CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchH
Q 043930 224 -------------------------------Y--MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ 270 (629)
Q Consensus 224 -------------------------------~--l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 270 (629)
+ ..+|++|+|++|.+.+..+..+. .+.+|++|+|++|+|++..+.
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~ 308 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADE 308 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChH
Confidence 1 15788888888888866666666 788888888888888877777
Q ss_pred HhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 271 SFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 271 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
.|.++.+|++|+|++|.|+++....|.++.+|++|+|++|.|.++....|.++.+|++|+|++|.|+.+
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 788888888888888888877777788888888888888888887777788888888888888887654
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.2e-28 Score=276.68 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=103.0
Q ss_pred hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC-cccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930 203 LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP-SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281 (629)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 281 (629)
+|++|++++|.+.+ ++..|.++.+|++|+|++|++.+..+ ..+. .+.+|++|+|++|++++..+..|.++.+|++|
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhh--ccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 34555555555443 33556667777777777777775555 3444 67888888888888887777788888888888
Q ss_pred ecccccccc-cccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930 282 DISDNMLTG-FVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 282 ~Ls~N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
+|++|.+.+ .++..|.++.+|++|+|++|++++.....|.++.+|++|+|++|.+++..
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 513 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC
Confidence 888888887 36777888899999999999998888888888999999999999888764
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.3e-29 Score=255.71 Aligned_cols=243 Identities=17% Similarity=0.198 Sum_probs=122.4
Q ss_pred CCcCceecCCCCC-----CCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCcc--ChhhhcCCCCCcEEEcc
Q 043930 68 CQYNGVLCDVFID-----NQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI--IPETFANMHRLEEFDVS 140 (629)
Q Consensus 68 c~~~g~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls 140 (629)
|.|.++.|..... ....+|+.|+|++|+|..+....|+++.+|++|+|++|++... ....+.++.+|++|+|+
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 5566666653211 1234566666666666544334456666666666666666522 23455566666666666
Q ss_pred CCcCCCCchhhhhCCCCCcEEEccCCcCccCCC-chhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccc-
Q 043930 141 NNRLVGPFPTVALTWKRNLYLDLRFNNFEGELP-PELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTG- 216 (629)
Q Consensus 141 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~- 216 (629)
+|.+.+ ++..+..+.+|++|+|++|++++... ..+.. .+|++|+|++|.+.+.....+.. .+|++|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 666654 44445666666666666666653222 12222 56666666666655444433332 344444444444443
Q ss_pred cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccc
Q 043930 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADI 296 (629)
Q Consensus 217 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 296 (629)
.++..|.++.+|++|+|++|+|++..+..+. .+.+|++|+|++|+|++.....|..+.+|++|+|++|.|.+.....+
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 2344444444444444444444433333333 34444444444444444333344444444444444444444444444
Q ss_pred cCC-CCCcEEEecCCccC
Q 043930 297 CKL-PHLLNFTFSNNFFQ 313 (629)
Q Consensus 297 ~~l-~~L~~L~L~~N~l~ 313 (629)
..+ .+|++|+|++|.|.
T Consensus 244 ~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCTTCCEEECTTCCEE
T ss_pred HhhhccCCEEEccCCCee
Confidence 444 24444444444443
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.2e-29 Score=282.10 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=70.2
Q ss_pred CCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc--CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930 180 GLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC--LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV 256 (629)
Q Consensus 180 ~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~ 256 (629)
+|++|+|++|.+++.++..++. .+|++|++++|++++. ++..|+++.+|++|+|++|++++.++..... .+.+|++
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-~l~~L~~ 432 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA-WAESILV 432 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC-CCTTCCE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc-CcccCCE
Confidence 3444444444444333333322 2344444444444431 1233444444444444444444323332211 3444444
Q ss_pred EEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 257 FDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 257 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
|+|++|+|++.++..+. .+|++|+|++|+|+. ++..+.++.+|++|+|++|+|+++....+..+.+|++|++++|.+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 44444444433222111 355555555555553 333344556666666666666654444455566666666666655
Q ss_pred c
Q 043930 337 A 337 (629)
Q Consensus 337 ~ 337 (629)
.
T Consensus 510 ~ 510 (562)
T 3a79_B 510 D 510 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=7.7e-29 Score=277.50 Aligned_cols=294 Identities=16% Similarity=0.097 Sum_probs=223.8
Q ss_pred hhcCCCcccccchhhhHHHHHH-HHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCc
Q 043930 23 DQYDLKDKTFESHRMKMAYVGL-QAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLP 101 (629)
Q Consensus 23 ~l~~L~~L~ls~~~l~~~~~~l-~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 101 (629)
.+.+++.|+++++.+......+ ..+..+. .. ....|.+.++....+ ..+.+|+.|+|++|.|.+..+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~---------~L-~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVE---------LL-NLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCS---------EE-ECTTSCCCEECTTTT--TTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCc---------EE-ECCCCCCCCCChHHh--cCCCCCCEEECCCCcCCCCCH
Confidence 4567788888888765543221 1111111 10 112233333322111 246789999999999999888
Q ss_pred hhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCC
Q 043930 102 PEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGL 181 (629)
Q Consensus 102 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L 181 (629)
..|+++.+|++|+|++|.|.+.....|+++.+|++|+|++|.|.+..+..|..+.+|++|+|++|+|++ +... ...+|
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~l~~L 194 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLS-LIPSL 194 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGG-GCTTC
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChh-hhhhh
Confidence 889999999999999999997766778999999999999999998888889999999999999999984 3211 11455
Q ss_pred CEEEecCcccccc------------------CchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 182 DIIFLNHNWFRGS------------------IPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 182 ~~L~L~~n~l~~~------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
++|++++|.+++. +...+ ..+|++|+|++|.+++. ..|+++.+|++|+|++|.|.+.++
T Consensus 195 ~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 195 FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred hhhhcccCccccccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCH
Confidence 5555555544421 11111 13588888999988864 678999999999999999998888
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
..+. .+.+|++|+|++|+|++ ++..+..+.+|++|+|++|.|.+ ++..+..+.+|++|+|++|.|.++. +..+
T Consensus 272 ~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~ 344 (597)
T 3oja_B 272 HPFV--KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LSTH 344 (597)
T ss_dssp GGGT--TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCTT
T ss_pred HHhc--CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhhc
Confidence 8887 89999999999999995 55666789999999999999995 5667888999999999999998874 6778
Q ss_pred CCCceecccCCcccccc
Q 043930 324 RDDVYFEEKGNCLAEME 340 (629)
Q Consensus 324 ~~L~~L~l~~N~l~~~~ 340 (629)
.+|++|+|++|.|.+..
T Consensus 345 ~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCSEEECCSSCEEHHH
T ss_pred CCCCEEEeeCCCCCChh
Confidence 99999999999998654
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.4e-28 Score=251.91 Aligned_cols=247 Identities=17% Similarity=0.214 Sum_probs=213.7
Q ss_pred EEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC--chhhhhCCCCCcEEEcc
Q 043930 87 AMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP--FPTVALTWKRNLYLDLR 164 (629)
Q Consensus 87 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls 164 (629)
+.+++++++++. ++..+ ..+|++|+|++|++.+.....|.++.+|++|+|++|.|+.. +...+..+.+|++|+|+
T Consensus 10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 468999988865 44433 36899999999999976666789999999999999999843 35677889999999999
Q ss_pred CCcCccCCCchhcc-CCCCEEEecCccccccCc-hhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc-
Q 043930 165 FNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIP-ETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG- 240 (629)
Q Consensus 165 ~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~- 240 (629)
+|+++ .++..+.. .+|++|+|++|.+++... ..+.. .+|++|++++|.+.+.....|.++.+|++|+|++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99998 56666555 899999999999986544 34433 689999999999998888889999999999999999986
Q ss_pred cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhh
Q 043930 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECI 320 (629)
Q Consensus 241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 320 (629)
.++..+. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|++.....|.++.+|++|+|++|.|.+.....+
T Consensus 166 ~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 166 FLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp EECSCCT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cchhHHh--hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 4677776 79999999999999998878899999999999999999998877789999999999999999999988888
Q ss_pred cCC-CCCceecccCCccccc
Q 043930 321 SGS-RDDVYFEEKGNCLAEM 339 (629)
Q Consensus 321 ~~l-~~L~~L~l~~N~l~~~ 339 (629)
..+ .+|++|+|++|.|++.
T Consensus 244 ~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCTTCCEEECTTCCEECS
T ss_pred HhhhccCCEEEccCCCeecc
Confidence 888 5999999999999753
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1.4e-28 Score=280.06 Aligned_cols=250 Identities=17% Similarity=0.121 Sum_probs=109.2
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhh--CCCCCcEE
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVAL--TWKRNLYL 161 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L 161 (629)
.+|++|+|++|++.++.+..|+++++|++|+|++|++.+.....|.++.+|++|+|++|.+++.....+. .+.+|++|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 4455555555555444444455555555555555555444444444555555555555555444333332 23455555
Q ss_pred EccCCcCccCCCchhcc-CCCCEEEecCccccccCchhh----hhhhhHHHHhcCCcccccCCccccCCCC--CcEEEcc
Q 043930 162 DLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETI----GESLARYIVLSSNNFTGCLPRSIGYMKE--LQEIILM 234 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~Ls 234 (629)
+|++|++++..+..+.. .+|+.|++.+|.+.+.....+ ...+|++|++++|.+.+..+..|.++.. |++|+|+
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls 256 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence 55555554322222111 111111111111110000000 0022444445555555444444444432 5555555
Q ss_pred CCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccc---------ccccccCCCCCcEE
Q 043930 235 ENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF---------VSADICKLPHLLNF 305 (629)
Q Consensus 235 ~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------~~~~l~~l~~L~~L 305 (629)
+|++++..+..+. .+.+|++|+|++|++++..+..|.++.+|++|+|++|.+.+. ....|..+.+|++|
T Consensus 257 ~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 257 YNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp TSCCCEECTTTTT--TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCcCccCccccc--CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 5555544444443 455555555555555544444455555555555554433211 01133444555555
Q ss_pred EecCCccCCcchhhhcCCCCCceecccCCc
Q 043930 306 TFSNNFFQGMAMECISGSRDDVYFEEKGNC 335 (629)
Q Consensus 306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~ 335 (629)
+|++|.+.++....|.++.+|++|++++|.
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 555555555444444455555555554443
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=273.36 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=110.6
Q ss_pred hhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCc-ccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930 203 LARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPS-EIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281 (629)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 281 (629)
+|++|++++|.+.+.... |.++.+|++|+|++|.+.+..+. .+. .+.+|++|+|++|.+++..+..|.++.+|++|
T Consensus 374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT--TCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh--cCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 455556666655543322 66677777777777777654442 333 67888888888888887777778888888888
Q ss_pred eccccccc-ccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccccCCC----CCCCCCCCCCC
Q 043930 282 DISDNMLT-GFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLP----TECYPVVSKPV 356 (629)
Q Consensus 282 ~Ls~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~----~~c~~~~~~p~ 356 (629)
+|++|.+. +.++..|..+.+|++|+|++|+++++....|.++.+|++|+|++|.|++.....+. .....+..+.+
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 88888887 45667788888888888888888888777888888888888888888776533221 13345666677
Q ss_pred CCCCC
Q 043930 357 DCSKD 361 (629)
Q Consensus 357 ~Cs~~ 361 (629)
.|++.
T Consensus 531 ~~~~~ 535 (570)
T 2z63_A 531 DCSCP 535 (570)
T ss_dssp CCCTT
T ss_pred cCCCc
Confidence 77653
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=2.4e-28 Score=284.22 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=235.7
Q ss_pred CcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCcCceecCCCCCCCcccEEEEEcCCCC
Q 043930 18 PNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWV--GTDVCQYNGVLCDVFIDNQERFVAMIDLNKAE 95 (629)
Q Consensus 18 ~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~ 95 (629)
+++|.++.+|++|++++|..... +..+.+..+.... ....|.+.++..+.+ ..+.+|+.|+|++|+
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~----------i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLT----------IDKEAFRNLPNLRILDLGSSKIYFLHPDAF--QGLFHLFELRLYFCG 108 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCE----------ECTTTTSSCTTCCEEECTTCCCCEECTTSS--CSCSSCCCEECTTCC
T ss_pred hhHCcccccCeEEeCCCCCCccc----------cCHHHhcCCCCCCEEECCCCcCcccCHhHc--cCCcccCEeeCcCCC
Confidence 56788888888888888743211 0001111122221 122333443322222 256789999999999
Q ss_pred ccccCchh--hhCCcCCCEEECCCCCCCccCh-hhhcCCCCCcEEEccCCcCCCCchhhhhCC--CCCcEEEccCCcCcc
Q 043930 96 IAAHLPPE--MGWLLDLIYFHANTNRLCGIIP-ETFANMHRLEEFDVSNNRLVGPFPTVALTW--KRNLYLDLRFNNFEG 170 (629)
Q Consensus 96 l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~ 170 (629)
+.+.++.. |+++++|++|+|++|.+.+... ..|+++++|++|+|++|.|.+.....+..+ .+|++|+|++|.+.+
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 98866655 8999999999999999987644 679999999999999999998888888777 899999999999987
Q ss_pred CCCchhcc-------CCCCEEEecCccccccCchhhhh---------------------------------------hhh
Q 043930 171 ELPPELFQ-------TGLDIIFLNHNWFRGSIPETIGE---------------------------------------SLA 204 (629)
Q Consensus 171 ~ip~~~~~-------~~L~~L~L~~n~l~~~~~~~~~~---------------------------------------~~L 204 (629)
.++..+.. ..|++|+|++|.+++.+...+.. .+|
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence 66655433 34899999999776554433321 358
Q ss_pred HHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284 (629)
Q Consensus 205 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 284 (629)
++|+|++|.+.+.....|..+.+|++|+|++|+|.+..+..+. .+.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 8899999999988889999999999999999999987777777 79999999999999998878899999999999999
Q ss_pred cccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
+|.|.++....|.++.+|++|+|++|.|+++. .+.+|+.|++++|.+..+
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCCC
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcccc
Confidence 99999887778999999999999999998643 266777777777777654
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.1e-28 Score=274.63 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=135.2
Q ss_pred CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCC-ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEE
Q 043930 179 TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLP-RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVF 257 (629)
Q Consensus 179 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L 257 (629)
.+|++|+|++|.+.+.........+|++|++++|.+.+... ..|.++++|++|+|++|.+.+.++..+. .+.+|++|
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L 450 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--GLSSLEVL 450 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT--TCTTCCEE
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh--cCCcCcEE
Confidence 45555555555555333331123579999999999987755 5789999999999999999988887777 79999999
Q ss_pred EecCCccc-ccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 258 DIRSNKFH-GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 258 ~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
+|++|.++ +.++..|..+.+|++|+|++|++++..+..|.++.+|++|+|++|+|+++....|.++.+|++|++++|.+
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 99999997 56788899999999999999999998888999999999999999999999888899999999999999998
Q ss_pred ccc
Q 043930 337 AEM 339 (629)
Q Consensus 337 ~~~ 339 (629)
.+.
T Consensus 531 ~~~ 533 (570)
T 2z63_A 531 DCS 533 (570)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=7.9e-28 Score=259.25 Aligned_cols=243 Identities=14% Similarity=0.141 Sum_probs=166.8
Q ss_pred EEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCc
Q 043930 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN 167 (629)
Q Consensus 88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 167 (629)
.+++.++++.. ++..+. .+|++|+|++|+|.+.....|.++.+|++|+|++|.|.+.....|.++.+|++|+|++|+
T Consensus 47 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 34444444432 333222 455566666666655555555566666666666666555444555556666666666666
Q ss_pred CccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 168 FEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 168 l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
|+ .++...+. .+|++|+|++|.|++.....+.. .+|++|+|++|+ +.......|.++.+|++|+|++|+|+ .++
T Consensus 124 l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred CC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 55 34333222 55666666666555433333333 356666666533 33333346888899999999999998 555
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
. +. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|+++..+.|..+
T Consensus 202 ~-~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 202 N-LT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C-CT--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c-cC--CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 3 44 68899999999999998878889999999999999999998888888999999999999999999888888899
Q ss_pred CCCceecccCCcccc
Q 043930 324 RDDVYFEEKGNCLAE 338 (629)
Q Consensus 324 ~~L~~L~l~~N~l~~ 338 (629)
.+|++|+|++|.+.+
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 999999999998864
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=8.8e-28 Score=250.42 Aligned_cols=290 Identities=15% Similarity=0.176 Sum_probs=223.7
Q ss_pred CCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCC
Q 043930 15 GKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKA 94 (629)
Q Consensus 15 ~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n 94 (629)
..++ .+.++.+|++|++++|++..... +..+. .+... ....|.+.++.. ...+.+|++|+|++|
T Consensus 57 ~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~---------~L~~L-~L~~n~i~~~~~----~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 57 ASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLV---------KLTNL-YIGTNKITDISA----LQNLTNLRELYLNED 120 (347)
T ss_dssp CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCT---------TCCEE-ECCSSCCCCCGG----GTTCTTCSEEECTTS
T ss_pred ccch-hhhhcCCccEEEccCCccccchh-hhcCC---------cCCEE-EccCCcccCchH----HcCCCcCCEEECcCC
Confidence 3444 48889999999999998765322 11111 11111 112233333211 125678999999999
Q ss_pred CccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCc
Q 043930 95 EIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPP 174 (629)
Q Consensus 95 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~ 174 (629)
++.+.. .+.++.+|++|+|++|.....+. .+.++.+|++|+|++|.+.+... +..+.+|++|+|++|+++ .+..
T Consensus 121 ~i~~~~--~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~ 194 (347)
T 4fmz_A 121 NISDIS--PLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP 194 (347)
T ss_dssp CCCCCG--GGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG
T ss_pred cccCch--hhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc
Confidence 997753 28899999999999996654444 48999999999999999987533 889999999999999998 5555
Q ss_pred hhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCC
Q 043930 175 ELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNL 254 (629)
Q Consensus 175 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L 254 (629)
.....+|++|++++|.+++... .....+|++|++++|++++... +..+.+|++|+|++|.+++ + ..+. .+.+|
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~--~l~~L 267 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVK--DLTKL 267 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGT--TCTTC
T ss_pred ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHh--cCCCc
Confidence 3333899999999999986543 2233689999999999986543 8899999999999999984 3 3454 78999
Q ss_pred cEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930 255 TVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN 334 (629)
Q Consensus 255 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 334 (629)
++|+|++|+|++. ..+..+.+|++|+|++|.+++.....|.++.+|++|+|++|.+++... +..+.+|++|++++|
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhh
Confidence 9999999999864 468899999999999999998888889999999999999999998766 788999999999999
Q ss_pred ccc
Q 043930 335 CLA 337 (629)
Q Consensus 335 ~l~ 337 (629)
.|+
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 886
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.9e-28 Score=260.16 Aligned_cols=226 Identities=15% Similarity=0.151 Sum_probs=151.5
Q ss_pred cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEE
Q 043930 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIF 185 (629)
Q Consensus 108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~ 185 (629)
.+|++|+|++|+|.+.....|.++.+|++|+|++|+|.+.....|.++.+|++|+|++|+|+ .++...+. .+|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence 34555555555555444445555555555555555555444444555555555555555554 33333222 4555555
Q ss_pred ecCccccccCchhhhh-hhhHHHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930 186 LNHNWFRGSIPETIGE-SLARYIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263 (629)
Q Consensus 186 L~~n~l~~~~~~~~~~-~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~ 263 (629)
|++|.|++.....+.. .+|++|+|++|+ +.......|.++.+|++|+|++|+|+ .++ .+. .+.+|++|+|++|+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~--~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLT--PLVGLEELEMSGNH 229 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCT--TCTTCCEEECTTSC
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-ccc--ccccccEEECcCCc
Confidence 5555554333323322 345555555532 33233346788889999999999988 444 344 68899999999999
Q ss_pred ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
|++..+..|.++.+|++|+|++|+|.++....|.++.+|++|+|++|+|+++..+.|..+.+|++|+|++|.+.+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 988888889999999999999999988878888889999999999999998888888889999999999998764
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.6e-28 Score=270.62 Aligned_cols=256 Identities=17% Similarity=0.192 Sum_probs=182.9
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
..+|++|+|++|+|.+..+.+|+++++|++|+|++|++.+..+..|.++.+|++|+|++|+|++.....|.++.+|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 45799999999999888888899999999999999999988888899999999999999999988777799999999999
Q ss_pred ccCCcCcc-CCCchhcc-CCCCEEEecCccccccCc-hhhhh-hhhHHHHhcCCcccccCCccccC--------------
Q 043930 163 LRFNNFEG-ELPPELFQ-TGLDIIFLNHNWFRGSIP-ETIGE-SLARYIVLSSNNFTGCLPRSIGY-------------- 224 (629)
Q Consensus 163 Ls~n~l~~-~ip~~~~~-~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~l~~~~~~~l~~-------------- 224 (629)
|++|++++ .++..+.. .+|++|+|++|.+.+.++ ..+.. .+|++|++++|++.+.++..|++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999874 23344444 889999999998554554 34444 57888999998888777666654
Q ss_pred ----------CCCCcEEEccCCcccccC--Cccccc--------------------------------------------
Q 043930 225 ----------MKELQEIILMENQLSGCL--PSEIGS-------------------------------------------- 248 (629)
Q Consensus 225 ----------l~~L~~L~Ls~n~l~~~~--p~~~~~-------------------------------------------- 248 (629)
+.+|++|+|++|++++.. +..+..
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 456666666666665421 000000
Q ss_pred ------------------------------------------CCCCCCcEEEecCCcccccchHHh-hcccCccceeccc
Q 043930 249 ------------------------------------------GEYKNLTVFDIRSNKFHGSVPQSF-ANLNNIMRLDISD 285 (629)
Q Consensus 249 ------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~ 285 (629)
..+.+|++|+|++|+++ .++..+ .++.+|++|+|++
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccC
Confidence 00123444444445444 333333 4677788888888
Q ss_pred cccccccc---ccccCCCCCcEEEecCCccCCcch--hhhcCCCCCceecccCCccccc
Q 043930 286 NMLTGFVS---ADICKLPHLLNFTFSNNFFQGMAM--ECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 286 N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~--~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
|.+.+.++ ..+..+.+|++|+|++|+|+++.. ..+..+.+|++|++++|.|+.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 402 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM 402 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC
Confidence 88776543 235667778888888887776643 4567777788888888877644
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1e-27 Score=270.06 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=95.4
Q ss_pred CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc-ccchHHhhcccCccceecccccccccccccccCCCCCcEE
Q 043930 227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH-GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF 305 (629)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 305 (629)
+|+.+++++|.+.+.....+. .+.+|++|+|++|++. +.++..|..+.+|++|+|++|+|+++.+..|.++.+|++|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccc--cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 333334444444333333333 4567777777777643 3456677888889999999999988888888889999999
Q ss_pred EecCCccCCcchhhhcCCCCCceecccCCccccccccCCCC-----CCCCCCCCCCCCCCC
Q 043930 306 TFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKLPT-----ECYPVVSKPVDCSKD 361 (629)
Q Consensus 306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~-----~c~~~~~~p~~Cs~~ 361 (629)
+|++|+|+++....|.++++|++|+|++|.|+......+.. ....+..+++.|+|.
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999998888888888999999999999988765543322 234677888888874
No 44
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=7e-28 Score=267.94 Aligned_cols=113 Identities=15% Similarity=0.213 Sum_probs=69.2
Q ss_pred cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc--chHHhhcccCccceeccccccccccc-ccccCC
Q 043930 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS--VPQSFANLNNIMRLDISDNMLTGFVS-ADICKL 299 (629)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l 299 (629)
+.+.+|++|+|++|++++.++..+. .+.+|++|+|++|+|++. ++..|.++.+|++|+|++|.|.+.++ ..+..+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 4556666666666666655555555 566677777777666642 23446666667777777776665233 335566
Q ss_pred CCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
.+|++|+|++|.|++.....+. .+|++|+|++|.|+.+
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i 465 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI 465 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence 6677777777766654433322 5677777777776644
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-27 Score=260.21 Aligned_cols=237 Identities=20% Similarity=0.247 Sum_probs=101.2
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccCh-------------------hhhcCCCCCcEEEccCCc
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIP-------------------ETFANMHRLEEFDVSNNR 143 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~l~~L~~L~Ls~n~ 143 (629)
+.+|+.|+|++|++.+.. .+.++.+|++|+|++|++.+... ..|.++.+|++|+|++|.
T Consensus 111 l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 445666666666554432 25555555555555555443210 113344444555555554
Q ss_pred CCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCcccc
Q 043930 144 LVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIG 223 (629)
Q Consensus 144 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 223 (629)
+.+. ..+..+.+|++|+|++|++++. .......+|++|+|++|.+++. .......+|++|++++|.+.+... +.
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCCC--hhhccCCCCCEEEecCCccccc-ccccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hh
Confidence 4432 2244445555555555554422 1111114444455544444421 111111344445555554443322 44
Q ss_pred CCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCc
Q 043930 224 YMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLL 303 (629)
Q Consensus 224 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~ 303 (629)
++.+|++|+|++|.+.+... +. .+.+|++|+|++|++++... +..+.+|++|+|++|.+.+..+ +..+.+|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred cCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 44444445544444442211 22 34444444444444443221 3444444444444444443322 33444444
Q ss_pred EEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930 304 NFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 304 ~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
+|+|++|.++++ ..+.++.+|++|++++|.+.
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 444444444433 23344444444444444443
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=7.5e-28 Score=261.42 Aligned_cols=243 Identities=18% Similarity=0.213 Sum_probs=201.6
Q ss_pred CcccEEEEEcCCCCccccC-------------------chhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930 82 QERFVAMIDLNKAEIAAHL-------------------PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN 142 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~-------------------p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 142 (629)
.+.+|+.|+|++|.+.+.. ...++++++|++|+|++|++.+. ..+.++.+|++|+|++|
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209 (466)
T ss_dssp TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence 4566777777777665421 12367788999999999999864 45899999999999999
Q ss_pred cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc
Q 043930 143 RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI 222 (629)
Q Consensus 143 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 222 (629)
.+.+..+ +..+.+|++|+|++|+++ .+.......+|++|+|++|.+++... .....+|++|++++|.+.+... +
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~ 283 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--L 283 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred ccccccc--ccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--c
Confidence 9998644 778999999999999998 45433333899999999999986544 3333689999999999986543 8
Q ss_pred cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCC
Q 043930 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302 (629)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 302 (629)
..+.+|++|+|++|++++... +. .+.+|++|+|++|++++..+ +..+.+|++|+|++|.+++. ..+.++.+|
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~--~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--IS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GG--GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred cCCCccCeEEcCCCcccCchh--hc--CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 899999999999999985433 44 78999999999999997655 78999999999999999985 578999999
Q ss_pred cEEEecCCccCCcchhhhcCCCCCceecccCCcccccccc
Q 043930 303 LNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQ 342 (629)
Q Consensus 303 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 342 (629)
++|+|++|++.+..+ +..+.+|++|++++|.+++....
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence 999999999998876 88999999999999999875543
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.3e-28 Score=273.11 Aligned_cols=307 Identities=14% Similarity=0.169 Sum_probs=188.4
Q ss_pred CCCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCC--CCCCCCcCceecCCCCCCCcccEEEEE
Q 043930 13 KDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWV--GTDVCQYNGVLCDVFIDNQERFVAMID 90 (629)
Q Consensus 13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~c~~~g~~~~~~~~~~~~~L~~L~ 90 (629)
...+|++.+. .+|++|++++|++..... +.+..+.... ....|.+.++.-+.+ ..+.+|++||
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~ 80 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGH-----------GDLRACANLQVLILKSSRINTIEGDAF--YSLGSLEHLD 80 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECS-----------STTSSCTTCCEEECTTSCCCEECTTTT--TTCTTCCEEE
T ss_pred ccccccccCC--CCccEEECcCCccCccCh-----------hhhhcCCcccEEECCCCCcCccChhhc--cccccCCEEE
Confidence 4456776654 688999999988654310 0011111111 112233333321111 1456788888
Q ss_pred cCCCCccccCchhhhCCcCCCEEECCCCCCCcc-ChhhhcCCCCCcEEEccCCcCCCCch-hhhhCCCCCcEEEccCCcC
Q 043930 91 LNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI-IPETFANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNF 168 (629)
Q Consensus 91 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l 168 (629)
|++|++.+..+..|+++++|++|+|++|++.+. ++..|+++.+|++|+|++|.+.+.++ ..+.++.+|++|+|++|++
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 888888877777788888888888888888753 45567888888888888887444343 5677888888888888888
Q ss_pred ccCCCchhcc-CCCCEEEecCccccccCchhhh--hhhhHHHHhcCCcccccC--C-ccc--------------------
Q 043930 169 EGELPPELFQ-TGLDIIFLNHNWFRGSIPETIG--ESLARYIVLSSNNFTGCL--P-RSI-------------------- 222 (629)
Q Consensus 169 ~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~--~~~L~~L~l~~n~l~~~~--~-~~l-------------------- 222 (629)
++.++..+.. .+|++|++++|.+. .++..+. ..+|++|++++|++.+.. . ...
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 8666666665 77888888888775 3333332 257888899888877531 0 000
Q ss_pred --------cC-----------------------------------------------------------CCCCcEEEccC
Q 043930 223 --------GY-----------------------------------------------------------MKELQEIILME 235 (629)
Q Consensus 223 --------~~-----------------------------------------------------------l~~L~~L~Ls~ 235 (629)
.. +.+|++|+|++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 00 12344444444
Q ss_pred CcccccCCcccccCCCCCCcEEEecCCcccccchH---HhhcccCccceeccccccccccc--ccccCCCCCcEEEecCC
Q 043930 236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ---SFANLNNIMRLDISDNMLTGFVS--ADICKLPHLLNFTFSNN 310 (629)
Q Consensus 236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~L~~N 310 (629)
|++. .++..++. .+.+|++|+|++|++++.++. .+..+.+|++|+|++|+|++... ..+..+.+|++|+|++|
T Consensus 320 n~l~-~ip~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 320 SKVF-LVPCSFSQ-HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp SCCC-CCCHHHHH-HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred Cccc-cCCHHHHh-cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 4443 34443321 466777777777777654432 24566677777777777765421 34666677777777777
Q ss_pred ccCCcchhhhcCCCCCceecccCCcccc
Q 043930 311 FFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 311 ~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
+|+++ +..+..+.+|++|++++|.|.+
T Consensus 398 ~l~~l-p~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 398 TFHPM-PDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCCCC-CSCCCCCTTCCEEECTTSCCSC
T ss_pred CCccC-ChhhcccccccEEECCCCCccc
Confidence 76643 3445566666666666666654
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.1e-27 Score=254.54 Aligned_cols=229 Identities=16% Similarity=0.149 Sum_probs=202.3
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
...+|+.|+|++|+|.++.+..|.++.+|++|+|++|+|.+.....|.++.+|++|+|++|+|++.....|..+.+|++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 34679999999999999989999999999999999999998888999999999999999999998777778999999999
Q ss_pred EccCCcCccCCCchhcc--CCCCEEEecCccccccCch-hhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCc
Q 043930 162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPE-TIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ 237 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 237 (629)
+|++|+|+ .++...+. .+|++|+|++|...+.+.. .+.. .+|++|+|++|++.+. ..+..+.+|++|+|++|+
T Consensus 153 ~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 153 WLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSC
T ss_pred ECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCc
Confidence 99999998 56655544 8999999999654445543 3433 5899999999999864 358889999999999999
Q ss_pred ccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc
Q 043930 238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315 (629)
Q Consensus 238 l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 315 (629)
|++..+..+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++....|..+.+|++|+|++|.+...
T Consensus 230 l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 230 FPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 9987788887 899999999999999988888999999999999999999988778889999999999999987643
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=4.2e-27 Score=254.21 Aligned_cols=282 Identities=15% Similarity=0.136 Sum_probs=147.1
Q ss_pred CcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCcc
Q 043930 18 PNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIA 97 (629)
Q Consensus 18 ~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~ 97 (629)
...++++.+|++|+++++++.+.. ++..+... .. .....|.+.++. ...+.+|+.|+|++|+|.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L---------~~-L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~l~ 98 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGL---------TK-LICTSNNITTLD-----LSQNTNLTYLACDSNKLT 98 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTC---------SE-EECCSSCCSCCC-----CTTCTTCSEEECCSSCCS
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCC---------CE-EEccCCcCCeEc-----cccCCCCCEEECcCCCCc
Confidence 345777788888888877765431 11111111 00 011122222221 113455666666666665
Q ss_pred ccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc
Q 043930 98 AHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF 177 (629)
Q Consensus 98 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~ 177 (629)
+. .++++.+|++|+|++|++++. + |+++.+|++|+|++|+|++. .+..+.+|++|+|++|++.+.+ .+.
T Consensus 99 ~~---~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~ 167 (457)
T 3bz5_A 99 NL---DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVT 167 (457)
T ss_dssp CC---CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCT
T ss_pred ee---ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccc
Confidence 53 255566666666666666542 1 55566666666666666552 2445555555555555433333 111
Q ss_pred c-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcE
Q 043930 178 Q-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTV 256 (629)
Q Consensus 178 ~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~ 256 (629)
. .+|++|+|++|.+++. + .....+|++|++++|++++. .|+.+.+|++|+|++|+|++ ++ +. .+.+|++
T Consensus 168 ~l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~ 237 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTY 237 (457)
T ss_dssp TCTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSE
T ss_pred cCCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc--ccCCCCE
Confidence 1 4555555555555432 1 11113444445555544432 24444444455554444443 22 22 3444444
Q ss_pred EEecCCcccccchHH-----------------------------hhcccCccceecccccccccccc--------cccCC
Q 043930 257 FDIRSNKFHGSVPQS-----------------------------FANLNNIMRLDISDNMLTGFVSA--------DICKL 299 (629)
Q Consensus 257 L~Ls~n~l~~~~~~~-----------------------------~~~l~~L~~L~Ls~N~l~~~~~~--------~l~~l 299 (629)
|+|++|+|++..... +..+.+|++|+|++|.+.+.++. .+.++
T Consensus 238 L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 238 FDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN 317 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred EEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence 444444444322211 23456677777777765443322 24556
Q ss_pred CCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 300 PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
.+|++|+|++|+|+++ .+.++++|++|++++|+|+++
T Consensus 318 ~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 318 PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC
T ss_pred ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc
Confidence 7888899999988885 378888899999999988763
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=4e-27 Score=265.24 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=114.1
Q ss_pred HHHhcCCcccccCCccccCCCCCcEEEccCCcccc-cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG-CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284 (629)
Q Consensus 206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 284 (629)
.+++++|.+.+.....+..+.+|++|+|++|.+.+ .++..+. .+.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~--~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhh--hccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 34445555555556667788999999999998653 4566666 79999999999999998889999999999999999
Q ss_pred cccccccccccccCCCCCcEEEecCCccCCcchhhhcCC-CCCceecccCCccccc
Q 043930 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS-RDDVYFEEKGNCLAEM 339 (629)
Q Consensus 285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~l~~N~l~~~ 339 (629)
+|+|+++....|.++.+|++|||++|+|+++..+.|..+ .+|++|+|++|.|.+.
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999888889999999999999999999999999888 7899999999998753
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.5e-27 Score=237.51 Aligned_cols=222 Identities=16% Similarity=0.188 Sum_probs=132.3
Q ss_pred EEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCC
Q 043930 87 AMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFN 166 (629)
Q Consensus 87 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 166 (629)
+.++++++++.. ++.. ...+|++|+|++|+|.+.....|.++.+|++|+|++|.|++..+..|..+.+|++|+|++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 445566665543 2322 2456677777777766655556666777777777777666655566666677777777776
Q ss_pred c-CccCC-Cchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930 167 N-FEGEL-PPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242 (629)
Q Consensus 167 ~-l~~~i-p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 242 (629)
+ ++ .+ +..+.. .+|++|+|++|.+++..+..+.. .+|++|++++|++.+.....|+++.+|++|+|++|+|++..
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 5 44 33 333322 56666666666666443333332 34444555555554444445666666666666666666433
Q ss_pred CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
...+. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|.++.+|++|+|++|.+..
T Consensus 170 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 33344 56666666666666666556666666666666666666666555556666666666666666654
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.2e-27 Score=238.38 Aligned_cols=238 Identities=18% Similarity=0.175 Sum_probs=200.2
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-CCCCchhhhhCCCCCcE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-LVGPFPTVALTWKRNLY 160 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~ 160 (629)
...+|+.|+|++|+|.+.....|.++.+|++|+|++|++.+..+..|.++.+|++|+|++|. +.+..+..+..+.+|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 45679999999999999888889999999999999999998888899999999999999997 77766888999999999
Q ss_pred EEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930 161 LDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL 238 (629)
Q Consensus 161 L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 238 (629)
|+|++|++++..+..+.. .+|++|+|++|.+++.....+.. .+|++|+|++|++++.....|.++.+|++|+|++|.|
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 999999998544554444 89999999999999766665654 5899999999999977777899999999999999999
Q ss_pred cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchh
Q 043930 239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME 318 (629)
Q Consensus 239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 318 (629)
++..+..+. .+.+|++|+|++|+|++.....|..+.+|++|+|++|.+....... .-+..|+.+++..+.+....+.
T Consensus 190 ~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 190 AHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CEECTTTTT--TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred cccCHhHcc--CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 988788887 7999999999999999887788999999999999999987532211 1112345555666777666666
Q ss_pred hhcC
Q 043930 319 CISG 322 (629)
Q Consensus 319 ~l~~ 322 (629)
.+.+
T Consensus 267 ~l~g 270 (285)
T 1ozn_A 267 RLAG 270 (285)
T ss_dssp GGTT
T ss_pred HhCC
Confidence 5544
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.8e-29 Score=254.99 Aligned_cols=246 Identities=16% Similarity=0.088 Sum_probs=191.6
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCC-ccChhhhc-------CCCCCcEEEccCCcCCCCchhhh--
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLC-GIIPETFA-------NMHRLEEFDVSNNRLVGPFPTVA-- 152 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~l-- 152 (629)
..+|+.|++++|.+ .++..+... |++|+|++|++. +.++..+. ++.+|++|+|++|+|++.++..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 45677888888988 667766654 888899999884 34555554 78999999999999988777765
Q ss_pred hCCCCCcEEEccCCcCccCCCchhcc------CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCccccc--CCcc--
Q 043930 153 LTWKRNLYLDLRFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGC--LPRS-- 221 (629)
Q Consensus 153 ~~l~~L~~L~Ls~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~--~~~~-- 221 (629)
..+.+|++|+|++|+|++. +..+.. .+|++|+|++|.|++..+..++. .+|++|+|++|++.+. +...
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999854 544432 68999999999998777666655 5799999999987754 2223
Q ss_pred ccCCCCCcEEEccCCcccc--cCCcccccCCCCCCcEEEecCCcccccch-HHhhcccCccceecccccccccccccccC
Q 043930 222 IGYMKELQEIILMENQLSG--CLPSEIGSGEYKNLTVFDIRSNKFHGSVP-QSFANLNNIMRLDISDNMLTGFVSADICK 298 (629)
Q Consensus 222 l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 298 (629)
++++.+|++|+|++|+|++ .+...+. ..+.+|++|+|++|+|++..+ ..+..+.+|++|+|++|+|+. ++..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALA-AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHH-HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-CCSSCC-
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHH-hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-hhhhcc-
Confidence 3788999999999999873 2222222 167899999999999987663 455668899999999999984 565555
Q ss_pred CCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 299 LPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 299 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
.+|++|||++|+|+++ +. +..+.+|++|+|++|.|++.
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7899999999999987 33 88899999999999998754
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-27 Score=246.37 Aligned_cols=237 Identities=17% Similarity=0.163 Sum_probs=170.3
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
..+|+.|+|++|+|.+..+..|+++.+|++|+|++|++.+... |..+.+|++|+|++|.|++ +..+.+|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-----EEECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-----ccCCCCcCEEE
Confidence 4467888888888877777778888888888888888776543 7778888888888887765 23447788888
Q ss_pred ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccc-cCCCCCcEEEccCCcccc
Q 043930 163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSI-GYMKELQEIILMENQLSG 240 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~ 240 (629)
|++|+|++. .... ..+|++|+|++|.+++.....++. .+|++|+|++|.+.+.....| ..+.+|++|+|++|.|++
T Consensus 106 l~~n~l~~~-~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRV-SCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEE-EECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCc-Cccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 888887732 2222 256888888888887655545544 467888888888876655555 367788888888888874
Q ss_pred cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccC-Ccchhh
Q 043930 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ-GMAMEC 319 (629)
Q Consensus 241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~ 319 (629)
. ... . .+.+|++|+|++|+|++. +..|..+.+|++|+|++|.|++ ++..+..+.+|++|+|++|.+. +.....
T Consensus 184 ~-~~~-~--~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 184 V-KGQ-V--VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp E-ECC-C--CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred c-ccc-c--ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 3 222 2 467888888888888743 3447778888888888888875 4566777788888888888887 566677
Q ss_pred hcCCCCCceecccCC
Q 043930 320 ISGSRDDVYFEEKGN 334 (629)
Q Consensus 320 l~~l~~L~~L~l~~N 334 (629)
+..+.+|+.|++.++
T Consensus 258 ~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 258 FSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HhccccceEEECCCc
Confidence 777788888877743
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.3e-27 Score=250.88 Aligned_cols=228 Identities=20% Similarity=0.226 Sum_probs=201.4
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
...+++.|+|++|+|.++....|.++++|++|+|++|+|.++....|.++.+|++|+|++|+|++.....|..+.+|++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 44678999999999999888999999999999999999998888899999999999999999998777789999999999
Q ss_pred EccCCcCccCCCchhcc--CCCCEEEecCccccccCch-hhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCc
Q 043930 162 DLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPE-TIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQ 237 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~-~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 237 (629)
+|++|+|+ .++...+. .+|++|+|++|...+.+.. .+.. .+|++|+|++|++++ ++ .|..+.+|++|+|++|+
T Consensus 142 ~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 142 WLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp ECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSC
T ss_pred eCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCc
Confidence 99999998 55554444 8999999999655445443 3443 589999999999984 44 58889999999999999
Q ss_pred ccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930 238 LSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 238 l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
|++..+..+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++....|..+.+|++|+|++|.+..
T Consensus 219 l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 219 LSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 9977787877 89999999999999998888889999999999999999998887888999999999999998864
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=244.85 Aligned_cols=241 Identities=16% Similarity=0.127 Sum_probs=206.9
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
.+++.++++.+++...+...+..+.+|++|+|++|+|.+..+..|.++.+|++|+|++|+|++... +..+.+|++|+|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 458888999999877766677788899999999999998888999999999999999999987544 889999999999
Q ss_pred cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
++|+|+ .+. ...+|++|+|++|.|++.....+ .+|++|++++|++++.....|+.+.+|++|+|++|.|++...
T Consensus 88 s~n~l~-~l~---~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 88 NNNYVQ-ELL---VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp CSSEEE-EEE---ECTTCCEEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred cCCccc-ccc---CCCCcCEEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 999998 333 22899999999999987654433 469999999999998878889999999999999999997666
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
..+.. .+.+|++|+|++|+|++. . .+..+.+|++|+|++|+|+++. ..|..+.+|++|+|++|.|+++ ...+..+
T Consensus 162 ~~~~~-~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~~l-~~~~~~l 236 (317)
T 3o53_A 162 AELAA-SSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLI-EKALRFS 236 (317)
T ss_dssp GGGGG-GTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEE-CTTCCCC
T ss_pred HHHhh-ccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCcccch-hhHhhcC
Confidence 66542 689999999999999854 2 3345899999999999999754 4588999999999999999965 5568889
Q ss_pred CCCceecccCCccc
Q 043930 324 RDDVYFEEKGNCLA 337 (629)
Q Consensus 324 ~~L~~L~l~~N~l~ 337 (629)
.+|++|++++|.+.
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 99999999999998
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=239.63 Aligned_cols=266 Identities=14% Similarity=0.157 Sum_probs=216.6
Q ss_pred EEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcC
Q 043930 89 IDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNF 168 (629)
Q Consensus 89 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 168 (629)
.++++++++. ++..+. .+|++|+|++|+|.+.....|.++.+|++|+|++|+|++.....|.++.+|++|+|++|+|
T Consensus 36 c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 7889998865 555444 5899999999999987777899999999999999999987778899999999999999999
Q ss_pred ccCCCchhcc--CCCCEEEecCccccccCc-hhhhh-hhhHHHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 169 EGELPPELFQ--TGLDIIFLNHNWFRGSIP-ETIGE-SLARYIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 169 ~~~ip~~~~~--~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
+ .++...+. .+|++|+|++|.+++... ..+.. .+|++|++++|+ +.+.....|+++++|++|+|++|++++..+
T Consensus 113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 8 67666443 899999999999985433 24443 689999999994 676667889999999999999999998878
Q ss_pred cccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccccccc---CCCCCcEEEecCCccCCc----c
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADIC---KLPHLLNFTFSNNFFQGM----A 316 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~l~~L~~L~L~~N~l~~~----~ 316 (629)
..+. .+.+|++|+|++|+++......+..+.+|++|+|++|.+++.....+. .+..|+.++|++|.+.+. +
T Consensus 192 ~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 192 KSLK--SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTTT--TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred HHHh--ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 8887 799999999999999854444456789999999999999986544433 467899999999999874 4
Q ss_pred hhhhcCCCCCceecccCCccccccccCC----CCCCCCCCCCCCCCCC
Q 043930 317 MECISGSRDDVYFEEKGNCLAEMEYQKL----PTECYPVVSKPVDCSK 360 (629)
Q Consensus 317 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~----~~~c~~~~~~p~~Cs~ 360 (629)
.+.+.++.+|++|+|++|.|+......+ ......+..+.+.|++
T Consensus 270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 5668899999999999999997654322 1233466677777765
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-25 Score=225.65 Aligned_cols=217 Identities=18% Similarity=0.274 Sum_probs=173.1
Q ss_pred CCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcC
Q 043930 65 TDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL 144 (629)
Q Consensus 65 ~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 144 (629)
.++|.|.|+.|... ..++.+++++++++. ++..+. .+|++|+|++|+|.+.....|.++.+|++|+|++|.|
T Consensus 2 ~~~C~~~~~~C~c~-----~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 73 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-----NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73 (270)
T ss_dssp CCCBGGGTCSBEEE-----TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC
T ss_pred CccCCCCCCCCEeC-----CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc
Confidence 47899999999743 346789999999975 554443 6899999999999987777899999999999999999
Q ss_pred CCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc
Q 043930 145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI 222 (629)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 222 (629)
++.....|..+.+|++|+|++|+|+ .++...+. .+|++|+|++|.+++ .....|
T Consensus 74 ~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~~~ 129 (270)
T 2o6q_A 74 QTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS-----------------------LPPRVF 129 (270)
T ss_dssp SCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCC-----------------------CCTTTT
T ss_pred CeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCe-----------------------eCHHHh
Confidence 8866666788999999999999998 55554443 778888887777663 223456
Q ss_pred cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCC
Q 043930 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHL 302 (629)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 302 (629)
.++.+|++|+|++|+|++.....+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|.|+++....|..+.+|
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKGVFD--KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CcCcCCCEEECCCCcCCccCHhHcc--CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 7788999999999998854444455 78899999999999887666678888899999999999887766678888899
Q ss_pred cEEEecCCccCCc
Q 043930 303 LNFTFSNNFFQGM 315 (629)
Q Consensus 303 ~~L~L~~N~l~~~ 315 (629)
++|+|++|.+...
T Consensus 208 ~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 208 KMLQLQENPWDCT 220 (270)
T ss_dssp CEEECCSSCBCCS
T ss_pred CEEEecCCCeeCC
Confidence 9999999887643
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=3e-28 Score=263.98 Aligned_cols=259 Identities=15% Similarity=0.083 Sum_probs=160.0
Q ss_pred cccEEEEEcCCCCccccCchhhhC-----CcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCCCchhhhh
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGW-----LLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVGPFPTVAL 153 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~ 153 (629)
+.+|+.|+|++|.+.+.....+.. +.+|++|+|++|++++. +...|..+.+|++|+|++|.+.+.....+.
T Consensus 112 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 191 (461)
T 1z7x_W 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLC 191 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHH
Confidence 345555666665554432222221 33466666666655542 234445556666666666665543222222
Q ss_pred -----CCCCCcEEEccCCcCccC----CCchhcc-CCCCEEEecCccccccCchhhh------hhhhHHHHhcCCccccc
Q 043930 154 -----TWKRNLYLDLRFNNFEGE----LPPELFQ-TGLDIIFLNHNWFRGSIPETIG------ESLARYIVLSSNNFTGC 217 (629)
Q Consensus 154 -----~l~~L~~L~Ls~n~l~~~----ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~------~~~L~~L~l~~n~l~~~ 217 (629)
.+.+|++|+|++|++++. +...+.. .+|++|+|++|.+++.....+. ..+|++|++++|.+++.
T Consensus 192 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 192 QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH
Confidence 244666666666666532 1222222 6677777777766643322221 23577777777777653
Q ss_pred ----CCccccCCCCCcEEEccCCcccccCCccccc---CCCCCCcEEEecCCccccc----chHHhhcccCccceecccc
Q 043930 218 ----LPRSIGYMKELQEIILMENQLSGCLPSEIGS---GEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDN 286 (629)
Q Consensus 218 ----~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~---~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N 286 (629)
+...|.++++|++|+|++|.|.+.....+.. ....+|++|+|++|.+++. +...+..+.+|++|+|++|
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 4555666778888888888776443322221 1235888888888888765 4556667789999999999
Q ss_pred cccccccccccC-----CCCCcEEEecCCccCC----cchhhhcCCCCCceecccCCccccccc
Q 043930 287 MLTGFVSADICK-----LPHLLNFTFSNNFFQG----MAMECISGSRDDVYFEEKGNCLAEMEY 341 (629)
Q Consensus 287 ~l~~~~~~~l~~-----l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~l~~N~l~~~~~ 341 (629)
.|++.....+.. +.+|++|+|++|.+++ .....+..+++|++|+|++|.|++...
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 888765444432 6789999999999986 556677788999999999999887643
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=9.1e-26 Score=233.22 Aligned_cols=205 Identities=16% Similarity=0.221 Sum_probs=175.3
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhC-------
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALT------- 154 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~------- 154 (629)
.+.+|++|+|++|+|. .++..|+++.+|++|+|++|+|. .++..|.++.+|++|+|++|++.+.++..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 4678999999999998 78899999999999999999999 67889999999999999999888888877654
Q ss_pred --CCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEE
Q 043930 155 --WKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEI 231 (629)
Q Consensus 155 --l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 231 (629)
+.+|++|+|++|+|+ .++..+.. .+|++|+|++|.+++ ++..|+++.+|++|
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~------------------------l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------------------------LGPAIHHLPKLEEL 234 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC------------------------CCGGGGGCTTCCEE
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc------------------------CchhhccCCCCCEE
Confidence 999999999999998 88887766 899999999998873 22346677888888
Q ss_pred EccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCc
Q 043930 232 ILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF 311 (629)
Q Consensus 232 ~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 311 (629)
+|++|++.+.++..+. .+.+|++|+|++|++.+.++..|.++.+|++|+|++|.+.+.++..|.++.+|+.+++..|.
T Consensus 235 ~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp ECTTCTTCCBCCCCTT--CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred ECcCCcchhhhHHHhc--CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 8888888888887777 78888888888888888888888888888888888888888888888888888888888766
Q ss_pred cCCc
Q 043930 312 FQGM 315 (629)
Q Consensus 312 l~~~ 315 (629)
+...
T Consensus 313 ~~~l 316 (328)
T 4fcg_A 313 QAQL 316 (328)
T ss_dssp SCC-
T ss_pred HHHH
Confidence 5543
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=251.53 Aligned_cols=235 Identities=17% Similarity=0.169 Sum_probs=197.9
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
..+|+.|+|++|.|.+..+..|+.+.+|++|+|++|.|.+..+ |..+.+|++|+|++|.|++ +....+|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-----EEECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-----CCCCCCcCEEE
Confidence 4579999999999999888899999999999999999987654 8999999999999999886 33448999999
Q ss_pred ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCcccc-CCCCCcEEEccCCcccc
Q 043930 163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIG-YMKELQEIILMENQLSG 240 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~ 240 (629)
|++|+|++... .. ..+|++|+|++|.|++..+..++. .+|++|+|++|.+++.++..|. .+.+|++|+|++|.|++
T Consensus 106 L~~N~l~~~~~-~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC-SR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE-CC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc-cc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999984333 22 278999999999999877766665 5799999999999988777776 78999999999999985
Q ss_pred cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccC-Ccchhh
Q 043930 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ-GMAMEC 319 (629)
Q Consensus 241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~ 319 (629)
. .. +. .+.+|++|+|++|+|++... .|..+.+|++|+|++|.|++ ++..+..+.+|+.|+|++|.+. +.....
T Consensus 184 ~-~~-~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 184 V-KG-QV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp E-EC-CC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred c-cc-cc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 5 22 22 58899999999999996544 58899999999999999997 5667888999999999999998 556677
Q ss_pred hcCCCCCceeccc
Q 043930 320 ISGSRDDVYFEEK 332 (629)
Q Consensus 320 l~~l~~L~~L~l~ 332 (629)
+..+..|+.|++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 8888888888875
No 62
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=2.1e-26 Score=241.60 Aligned_cols=252 Identities=15% Similarity=0.136 Sum_probs=182.3
Q ss_pred EEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccCh----hhhcCCC-CCcEEEccCCcCCCCchhhhhCC-----CC
Q 043930 88 MIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIP----ETFANMH-RLEEFDVSNNRLVGPFPTVALTW-----KR 157 (629)
Q Consensus 88 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~l~~l-----~~ 157 (629)
.++|++|++.+.++..+...++|++|+|++|+|.+... ..|.++. +|++|+|++|+|++.....+..+ .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35777888888777777777778888888888876655 6677777 78888888888877666666554 78
Q ss_pred CcEEEccCCcCccCCCchhcc------CCCCEEEecCccccccCchhhhh------hhhHHHHhcCCcccccC----Ccc
Q 043930 158 NLYLDLRFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGE------SLARYIVLSSNNFTGCL----PRS 221 (629)
Q Consensus 158 L~~L~Ls~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~l~~n~l~~~~----~~~ 221 (629)
|++|+|++|+|++.....+.. .+|++|+|++|.|++.....+.. .+|++|+|++|.+++.. ...
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888887555443332 57888888888887666555543 37888888888887543 333
Q ss_pred ccCCC-CCcEEEccCCcccccCCccccc--CCC-CCCcEEEecCCccccc----chHHhhc-ccCccceecccccccccc
Q 043930 222 IGYMK-ELQEIILMENQLSGCLPSEIGS--GEY-KNLTVFDIRSNKFHGS----VPQSFAN-LNNIMRLDISDNMLTGFV 292 (629)
Q Consensus 222 l~~l~-~L~~L~Ls~n~l~~~~p~~~~~--~~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~ 292 (629)
|..+. +|++|+|++|+|++.....+.. ..+ .+|++|||++|.|++. +...+.. ..+|++|+|++|.|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44554 8999999999988655433321 134 5899999999998864 3445555 358999999999998754
Q ss_pred c----ccccCCCCCcEEEecCCccCCcch-------hhhcCCCCCceecccCCccccc
Q 043930 293 S----ADICKLPHLLNFTFSNNFFQGMAM-------ECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 293 ~----~~l~~l~~L~~L~L~~N~l~~~~~-------~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
. ..+..+.+|++|+|++|.+.++.. +.+..+.+|++||+++|.|.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 334667889999999998655433 3556778899999999998765
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=6.3e-27 Score=240.34 Aligned_cols=205 Identities=18% Similarity=0.167 Sum_probs=129.5
Q ss_pred ccEEEEEcCCCCccccCchhh--hCCcCCCEEECCCCCCCccChhhhcCC-----CCCcEEEccCCcCCCCchhhhhCCC
Q 043930 84 RFVAMIDLNKAEIAAHLPPEM--GWLLDLIYFHANTNRLCGIIPETFANM-----HRLEEFDVSNNRLVGPFPTVALTWK 156 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l~~l~ 156 (629)
.+|++|+|++|+|.+.++..+ +.+++|++|+|++|++.+. +..|.++ .+|++|+|++|+|.+..+..|..+.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 445555555555555555443 5555555555555555544 4444444 5555555555555554445555555
Q ss_pred CCcEEEccCCcCccCC--Cchh--cc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEE
Q 043930 157 RNLYLDLRFNNFEGEL--PPEL--FQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEI 231 (629)
Q Consensus 157 ~L~~L~Ls~n~l~~~i--p~~~--~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 231 (629)
+|++|+|++|++.+.+ ...+ .. .+|++|+|++|.|++. . +.....+.++++|++|
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-------------------~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-S-------------------GVCSALAAARVQLQGL 233 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-H-------------------HHHHHHHHTTCCCSEE
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-H-------------------HHHHHHHhcCCCCCEE
Confidence 5555555555544321 1111 11 4555555555554411 0 1111234567899999
Q ss_pred EccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCc
Q 043930 232 ILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF 311 (629)
Q Consensus 232 ~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 311 (629)
+|++|+|++.++.... ..+.+|++|+|++|+|+ .++..+. .+|++|||++|+|++. +. +..+.+|++|+|++|.
T Consensus 234 ~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp ECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCT
T ss_pred ECCCCcCCcccchhhh-hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCC
Confidence 9999999976643322 15789999999999998 6666655 7899999999999986 44 8899999999999999
Q ss_pred cCCc
Q 043930 312 FQGM 315 (629)
Q Consensus 312 l~~~ 315 (629)
|++.
T Consensus 308 l~~~ 311 (312)
T 1wwl_A 308 FLDS 311 (312)
T ss_dssp TTCC
T ss_pred CCCC
Confidence 9864
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-26 Score=250.81 Aligned_cols=236 Identities=17% Similarity=0.128 Sum_probs=197.0
Q ss_pred EcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCc
Q 043930 90 DLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFE 169 (629)
Q Consensus 90 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 169 (629)
++...++...+......+.+|++|+|++|.|.+..+..|.++.+|++|+|++|.|++..+ +..+.+|++|+|++|.|+
T Consensus 16 ~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp SCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE
T ss_pred cCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC
Confidence 444444433222223334589999999999999888899999999999999999987554 889999999999999998
Q ss_pred cCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccC
Q 043930 170 GELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSG 249 (629)
Q Consensus 170 ~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 249 (629)
.++. ..+|++|+|++|.|++.....+ .+|++|+|++|.+++..+..|+++.+|++|+|++|.|++.++..+..
T Consensus 94 -~l~~---~~~L~~L~L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~- 166 (487)
T 3oja_A 94 -ELLV---GPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA- 166 (487)
T ss_dssp -EEEE---CTTCCEEECCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-
T ss_pred -CCCC---CCCcCEEECcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-
Confidence 3332 2899999999999997655433 57999999999999988889999999999999999999877777652
Q ss_pred CCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCcee
Q 043930 250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYF 329 (629)
Q Consensus 250 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 329 (629)
.+.+|++|+|++|.|++.. .+..+.+|++|+|++|.|+++.. .|..+.+|+.|+|++|.|+++ +..+..+.+|+.|
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L 242 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHF 242 (487)
T ss_dssp GTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEE
T ss_pred hCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEE
Confidence 6899999999999998652 34468999999999999998544 488999999999999999974 5568889999999
Q ss_pred cccCCcccc
Q 043930 330 EEKGNCLAE 338 (629)
Q Consensus 330 ~l~~N~l~~ 338 (629)
++++|.+.+
T Consensus 243 ~l~~N~l~c 251 (487)
T 3oja_A 243 DLRGNGFHC 251 (487)
T ss_dssp ECTTCCBCH
T ss_pred EcCCCCCcC
Confidence 999999983
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=7.7e-27 Score=252.90 Aligned_cols=310 Identities=13% Similarity=0.070 Sum_probs=217.4
Q ss_pred hhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCcee----cCCCCCCCcccEEEEEcCCCCc
Q 043930 21 FEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVL----CDVFIDNQERFVAMIDLNKAEI 96 (629)
Q Consensus 21 l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~----~~~~~~~~~~~L~~L~L~~n~l 96 (629)
+..+.+|++|++++|++.... +..+...+... ..+..++ ...+.+.... +... .....+|++|+|++|+|
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~--~~~l~~~l~~~--~~L~~L~-Ls~n~l~~~~~~~l~~~l-~~~~~~L~~L~L~~n~i 97 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEAR--CKDISSALRVN--PALAELN-LRSNELGDVGVHCVLQGL-QTPSCKIQKLSLQNCCL 97 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHH--HHHHHHHHHTC--TTCCEEE-CTTCCCHHHHHHHHHHTT-CSTTCCCCEEECTTSCC
T ss_pred HhhcCCccEEEccCCCCCHHH--HHHHHHHHHhC--CCcCEEe-CCCCcCChHHHHHHHHHH-hhCCCceeEEEccCCCC
Confidence 677889999999999886542 22333333211 1111111 1112222111 1100 00112699999999999
Q ss_pred cc----cCchhhhCCcCCCEEECCCCCCCccChhhhc-----CCCCCcEEEccCCcCCCCc----hhhhhCCCCCcEEEc
Q 043930 97 AA----HLPPEMGWLLDLIYFHANTNRLCGIIPETFA-----NMHRLEEFDVSNNRLVGPF----PTVALTWKRNLYLDL 163 (629)
Q Consensus 97 ~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L 163 (629)
.+ .+...+.++++|++|+|++|.+.+.....+. .+.+|++|+|++|++++.. ...+..+.+|++|+|
T Consensus 98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 98 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177 (461)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEEC
Confidence 85 4577888999999999999998754333332 3568999999999998643 555677899999999
Q ss_pred cCCcCccCCCchhcc------CCCCEEEecCccccccC----chhhhh-hhhHHHHhcCCcccccC-----CccccCCCC
Q 043930 164 RFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSI----PETIGE-SLARYIVLSSNNFTGCL-----PRSIGYMKE 227 (629)
Q Consensus 164 s~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~----~~~~~~-~~L~~L~l~~n~l~~~~-----~~~l~~l~~ 227 (629)
++|.+++.....+.. .+|++|+|++|.+++.. ...+.. .+|++|++++|.+++.. ...+..+.+
T Consensus 178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 999987543333322 48999999999998643 333333 57899999999887542 222345789
Q ss_pred CcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchHHhhcc-----cCccceeccccccccc----ccc
Q 043930 228 LQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANL-----NNIMRLDISDNMLTGF----VSA 294 (629)
Q Consensus 228 L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~----~~~ 294 (629)
|++|+|++|+|++. +...+. .+.+|++|+|++|.|++.....+... .+|++|+|++|.|++. +..
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLR--AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHH--HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHh--hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 99999999999854 455555 58899999999999986555555543 6899999999999875 345
Q ss_pred cccCCCCCcEEEecCCccCCcchhhhcC-----CCCCceecccCCcccc
Q 043930 295 DICKLPHLLNFTFSNNFFQGMAMECISG-----SRDDVYFEEKGNCLAE 338 (629)
Q Consensus 295 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~-----l~~L~~L~l~~N~l~~ 338 (629)
.+..+.+|++|+|++|.+++.....+.. +.+|++|+|++|.|++
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 5667899999999999998765544442 6799999999999985
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.9e-24 Score=217.75 Aligned_cols=205 Identities=16% Similarity=0.098 Sum_probs=134.1
Q ss_pred cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEe
Q 043930 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFL 186 (629)
Q Consensus 108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L 186 (629)
.+|++|+|++|++.+.....|.++.+|++|+|++|+|++.....|.++.+|++|+|++|++++.....+.. .+|++|+|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666777777666555556666667777777777666555555666667777777777666333333332 56666666
Q ss_pred cCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc-CCcccccCCCCCCcEEEecCCccc
Q 043930 187 NHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC-LPSEIGSGEYKNLTVFDIRSNKFH 265 (629)
Q Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~l~~L~~L~Ls~n~l~ 265 (629)
++|.+.+. ....|+++.+|++|+|++|.|++. ++..+. .+.+|++|+|++|+|+
T Consensus 108 ~~n~l~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~--~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASL-----------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCS-----------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCC
T ss_pred CCCCcccc-----------------------CchhcccCCCCCEEECcCCccceecCchhhc--cCCCCCEEECCCCCCC
Confidence 66555421 122356677777777777777642 456665 6777778888777777
Q ss_pred ccchHHhhcccCcc----ceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 266 GSVPQSFANLNNIM----RLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 266 ~~~~~~~~~l~~L~----~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
+.....|..+.+|+ +|+|++|.|.++....+ ...+|++|+|++|+|+++....|.++.+|++|+|++|.|.+
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 66566666666666 67777887776544433 33478888888888877776677777888888888877764
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.8e-24 Score=233.52 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=133.0
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+.+|+.|+|++|+|.+. + .|+++++|++|+|++|+|++. .|+++.+|++|+|++|+|++. .+.++.+|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEE
Confidence 45577777777777654 3 567777777777777777653 266777777777777777663 266677777777
Q ss_pred ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930 163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 241 (629)
|++|++++ ++ +.. .+|++|+|++|.+++. . .-...+|++|++++|...+.+ .++.+.+|++|+|++|+|++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 77777763 43 222 6677777777777653 1 112245667777777544444 36666777777777777764
Q ss_pred CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcc
Q 043930 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316 (629)
Q Consensus 242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 316 (629)
++ +. .+.+|++|+|++|+|++. .|..+.+|++|+|++|+|+++ + +..+.+|++|+|++|+|+++.
T Consensus 185 l~--l~--~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 185 LD--VS--QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp CC--CT--TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC
T ss_pred ec--cc--cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC
Confidence 32 33 566677777777776643 356666777777777777663 2 566667777777777766654
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.4e-25 Score=240.17 Aligned_cols=231 Identities=17% Similarity=0.162 Sum_probs=104.4
Q ss_pred hhhcCCCCCCCCcchhhhcCCCcccccchhhhHHHH-------H--HHHHHHHhhc-----CC-CCCCCCC-------C-
Q 043930 7 QALSLPKDGKLPNDFEDQYDLKDKTFESHRMKMAYV-------G--LQAFKKAIYS-----DP-YNHTENW-------V- 63 (629)
Q Consensus 7 ~~l~~~~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~-------~--l~~~~~~~~~-----~~-~~~l~~~-------~- 63 (629)
..++.+..++|++.|+++++|++|++++|++.+... . ...+...... +. ...+..+ .
T Consensus 16 L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L~~ 95 (454)
T 1jl5_A 16 PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLES 95 (454)
T ss_dssp ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTCSE
T ss_pred hhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCCCE
Confidence 344556668999999999999999999998753211 1 1111111100 00 0000000 0
Q ss_pred -CCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCC
Q 043930 64 -GTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNN 142 (629)
Q Consensus 64 -~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 142 (629)
....+.+.++. ....+|+.|+|++|++.+. +. ...+|++|+|++|++.+ ++ .|+++.+|++|+|++|
T Consensus 96 L~l~~n~l~~lp------~~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 96 LVASCNSLTELP------ELPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp EECCSSCCSSCC------CCCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred EEccCCcCCccc------cccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 00111111110 1123455555555555431 11 11466666666666664 33 4666666666666666
Q ss_pred cCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccc
Q 043930 143 RLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSI 222 (629)
Q Consensus 143 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 222 (629)
++++ ++.. ..+|++|+|++|+++ .++......+|++|++++|.+++ ++... .+|++|++++|.+. .++ .|
T Consensus 164 ~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 164 SLKK-LPDL---PPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCC-CC
T ss_pred cCcc-cCCC---cccccEEECcCCcCC-cCccccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-ccc-cc
Confidence 6664 3322 236666666666665 34421112666666666666654 22221 25666666666666 344 36
Q ss_pred cCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccc
Q 043930 223 GYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265 (629)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~ 265 (629)
+++.+|++|+|++|++++ ++. .+.+|++|+|++|+++
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~-----~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPD-----LPPSLEALNVRDNYLT 270 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCS-----CCTTCCEEECCSSCCS
T ss_pred CCCCCCCEEECCCCcCCc-ccc-----cccccCEEECCCCccc
Confidence 666666666666666652 222 1234555555555544
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.4e-24 Score=218.67 Aligned_cols=208 Identities=13% Similarity=0.087 Sum_probs=171.8
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
...|+.|+|++|+|.+.....|.++.+|++|+|++|++.+.....|.++.+|++|+|++|.|++.....|.++.+|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35699999999999988878899999999999999999988778899999999999999999987778899999999999
Q ss_pred ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930 163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 241 (629)
|++|++++.....+.. .+|++|+|++|.+++. .++..|+++.+|++|+|++|+|++.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCcC
Confidence 9999998433333433 7899999988887632 2345677889999999999999866
Q ss_pred CCcccccCCCCCCc----EEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc
Q 043930 242 LPSEIGSGEYKNLT----VFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315 (629)
Q Consensus 242 ~p~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 315 (629)
....+. .+.+|+ +|+|++|.|++.....+ ...+|++|+|++|+|+++....|.++.+|++|+|++|.+.+.
T Consensus 165 ~~~~~~--~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 165 YCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CGGGGH--HHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CHHHhh--hhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 555554 455555 89999999986544444 445899999999999987767788899999999999998753
No 70
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.6e-25 Score=235.39 Aligned_cols=232 Identities=18% Similarity=0.209 Sum_probs=148.6
Q ss_pred cccEEEEEcCCCCccccCc----hhhhCCcCCCEEECCCCC---CCccChhhh-------cCCCCCcEEEccCCcCCC--
Q 043930 83 ERFVAMIDLNKAEIAAHLP----PEMGWLLDLIYFHANTNR---LCGIIPETF-------ANMHRLEEFDVSNNRLVG-- 146 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~n~---l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~-- 146 (629)
..+|+.|+|++|+|.+... ..|.++++|++|+|++|. +.+.++..+ ..+.+|++|+|++|.|.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4567888888888776533 335577888888888753 333444433 677888888888888876
Q ss_pred --CchhhhhCCCCCcEEEccCCcCccCCCchhcc--------------CCCCEEEecCcccccc-Cc---hhhhh-hhhH
Q 043930 147 --PFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--------------TGLDIIFLNHNWFRGS-IP---ETIGE-SLAR 205 (629)
Q Consensus 147 --~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--------------~~L~~L~L~~n~l~~~-~~---~~~~~-~~L~ 205 (629)
.+...+..+.+|++|+|++|.|++.....+.. .+|++|+|++|.|+.. +. ..+.. .+|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 35556777888888888888876332222222 4788888888887632 22 12222 3577
Q ss_pred HHHhcCCcccc-----cCCccccCCCCCcEEEccCCccc----ccCCcccccCCCCCCcEEEecCCccccc----chHHh
Q 043930 206 YIVLSSNNFTG-----CLPRSIGYMKELQEIILMENQLS----GCLPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSF 272 (629)
Q Consensus 206 ~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~ 272 (629)
+|+|++|+++. .+...|.++.+|++|+|++|.|+ +.++..+. .+.+|++|+|++|.|++. +...+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 77777777662 12235666777777777777774 34555554 567777777777777654 33444
Q ss_pred hc--ccCccceecccccccc----cccccc-cCCCCCcEEEecCCccCCcc
Q 043930 273 AN--LNNIMRLDISDNMLTG----FVSADI-CKLPHLLNFTFSNNFFQGMA 316 (629)
Q Consensus 273 ~~--l~~L~~L~Ls~N~l~~----~~~~~l-~~l~~L~~L~L~~N~l~~~~ 316 (629)
.. +.+|++|+|++|.|++ .+...+ .++.+|++|+|++|.|++..
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 32 6777777777777776 244444 44677777777777776654
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.6e-23 Score=212.42 Aligned_cols=200 Identities=20% Similarity=0.189 Sum_probs=139.2
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+.+++.|+++++++.. ++..+ ..+|++|+|++|+|.+.....|.++.+|++|+|++|.|++.. . ...+.+|++|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-V-DGTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-C-CSCCTTCCEEE
T ss_pred cCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc-C-CCCCCcCCEEE
Confidence 4557777777777754 34333 257777788877777766677777777777777777776532 2 25677777777
Q ss_pred ccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930 163 LRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 241 (629)
|++|+|+ .++..+.. .+|++|+|++|+|+ +.....|.++.+|++|+|++|+|++.
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-----------------------~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-----------------------SLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-----------------------CCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCc-----------------------ccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 7777776 55554433 56666666666554 23335677788888888888888844
Q ss_pred CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
....+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+. ++..+..+.+|+.|+|++|.+..
T Consensus 140 ~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 140 PPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTT--TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred Chhhcc--cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence 444444 67888888888888886555667778888888888888874 56666677788888888887764
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.6e-25 Score=230.57 Aligned_cols=248 Identities=15% Similarity=0.163 Sum_probs=179.9
Q ss_pred cEEEEEcCCCCccccCchhhhCC--cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC-chhhhhCCCCCcEE
Q 043930 85 FVAMIDLNKAEIAAHLPPEMGWL--LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP-FPTVALTWKRNLYL 161 (629)
Q Consensus 85 ~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L 161 (629)
.++.||++++++. ...+..+ .+|++|++++|.+.+.... +.++.+|++|+|++|.+.+. +...+..+.+|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667888887775 3455666 7788888888888765544 45678888888888887754 66667788888888
Q ss_pred EccCCcCccCCCchhcc-CCCCEEEecCc-ccccc-Cchhhhh-hhhHHHHhcCC-ccccc-CCccccCCC-CCcEEEcc
Q 043930 162 DLRFNNFEGELPPELFQ-TGLDIIFLNHN-WFRGS-IPETIGE-SLARYIVLSSN-NFTGC-LPRSIGYMK-ELQEIILM 234 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n-~l~~~-~~~~~~~-~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~Ls 234 (629)
+|++|++++.+...+.. .+|++|+|++| .+++. +...+.. .+|++|++++| .+++. +...+..+. +|++|+|+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888877655555554 78888888888 56643 3333333 46888888888 77754 456677888 99999999
Q ss_pred CC--ccc-ccCCcccccCCCCCCcEEEecCCc-ccccchHHhhcccCccceecccc-cccccccccccCCCCCcEEEecC
Q 043930 235 EN--QLS-GCLPSEIGSGEYKNLTVFDIRSNK-FHGSVPQSFANLNNIMRLDISDN-MLTGFVSADICKLPHLLNFTFSN 309 (629)
Q Consensus 235 ~n--~l~-~~~p~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L~~L~L~~ 309 (629)
+| .++ +.++..+. .+.+|++|+|++|. +++.....|.++.+|++|+|++| .+.......+.++.+|++|+|++
T Consensus 204 ~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp SCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 99 454 34455555 68899999999998 77677778889999999999999 45444444678899999999999
Q ss_pred CccCCcchhhhcCCCCCceecccCCccccccc
Q 043930 310 NFFQGMAMECISGSRDDVYFEEKGNCLAEMEY 341 (629)
Q Consensus 310 N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 341 (629)
| +.+.....+. ..|+.|++++|.+++...
T Consensus 282 ~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 282 I-VPDGTLQLLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp S-SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred c-cCHHHHHHHH--hhCcceEEecccCccccC
Confidence 9 5554333332 346677788898886554
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.7e-24 Score=214.39 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=56.0
Q ss_pred ccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCC
Q 043930 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH 301 (629)
Q Consensus 222 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 301 (629)
|+++.+|++|+|++|+|++.....+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|.|++.....|.++.+
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFD--KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHHHhc--cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcC
Confidence 44455555555555555533333333 4555555555555555444444555555555555555555544444555555
Q ss_pred CcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 302 LLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 302 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
|++|+|++|.+.+. +..|++|++.+|.+.+
T Consensus 207 L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 207 LQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCEEECCSSCBCCC-------TTTTHHHHHHHHHTGG
T ss_pred CCEEEccCCCcccc-------CcHHHHHHHHHHhCCC
Confidence 55555555555432 3445555555555543
No 74
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5e-25 Score=233.17 Aligned_cols=239 Identities=18% Similarity=0.185 Sum_probs=188.3
Q ss_pred CchhhhCCcCCCEEECCCCCCCccC----hhhhcCCCCCcEEEccCCcC---CCCchhhh-------hCCCCCcEEEccC
Q 043930 100 LPPEMGWLLDLIYFHANTNRLCGII----PETFANMHRLEEFDVSNNRL---VGPFPTVA-------LTWKRNLYLDLRF 165 (629)
Q Consensus 100 ~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l---~~~~~~~l-------~~l~~L~~L~Ls~ 165 (629)
+...+..+++|++|+|++|+|.+.. ...|..+++|++|+|++|.+ .+.++..+ ..+.+|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 5567888999999999999998653 34477899999999999744 44444444 6889999999999
Q ss_pred CcCccC----CCchhcc-CCCCEEEecCccccccCchhhhh--------------hhhHHHHhcCCcccc-cCC---ccc
Q 043930 166 NNFEGE----LPPELFQ-TGLDIIFLNHNWFRGSIPETIGE--------------SLARYIVLSSNNFTG-CLP---RSI 222 (629)
Q Consensus 166 n~l~~~----ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~--------------~~L~~L~l~~n~l~~-~~~---~~l 222 (629)
|+|++. ++..+.. .+|++|+|++|.|++.....+.. .+|++|+|++|++++ .+. ..|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 999853 3434443 89999999999997554444433 378999999999973 333 467
Q ss_pred cCCCCCcEEEccCCccccc-----CCcccccCCCCCCcEEEecCCccc----ccchHHhhcccCccceeccccccccc--
Q 043930 223 GYMKELQEIILMENQLSGC-----LPSEIGSGEYKNLTVFDIRSNKFH----GSVPQSFANLNNIMRLDISDNMLTGF-- 291 (629)
Q Consensus 223 ~~l~~L~~L~Ls~n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~-- 291 (629)
..+.+|++|+|++|+|+.. +...+. .+.+|++|+|++|.|+ ..++..|..+.+|++|+|++|.|++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhh--cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 7889999999999999732 232555 7899999999999996 46777888999999999999999875
Q ss_pred --ccccc--cCCCCCcEEEecCCccCC----cchhhh-cCCCCCceecccCCcccccc
Q 043930 292 --VSADI--CKLPHLLNFTFSNNFFQG----MAMECI-SGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 292 --~~~~l--~~l~~L~~L~L~~N~l~~----~~~~~l-~~l~~L~~L~l~~N~l~~~~ 340 (629)
+...+ .++.+|++|+|++|.|++ .+...+ .++.+|++|+|++|.|++..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 34555 338999999999999998 355555 56899999999999998655
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.3e-24 Score=232.56 Aligned_cols=227 Identities=17% Similarity=0.176 Sum_probs=108.1
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCC-------------CcEEEccCCcCCCCchh
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHR-------------LEEFDVSNNRLVGPFPT 150 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-------------L~~L~Ls~n~l~~~~~~ 150 (629)
.+|+.|++++|++ +.++.+|+++++|++|++++|++.|.++..++++.+ |++|+|++|.+++ ++.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4566777777777 566767777777777777777766666666666554 3666666666665 222
Q ss_pred hhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcE
Q 043930 151 VALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQE 230 (629)
Q Consensus 151 ~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 230 (629)
...+|++|+|++|++++ ++..+ .+|++|+|++|.+++. +... .+|++|++++|++.+ ++ .|+++++|++
T Consensus 89 ---~~~~L~~L~l~~n~l~~-lp~~~--~~L~~L~l~~n~l~~l-~~~~--~~L~~L~L~~n~l~~-lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 ---LPPHLESLVASCNSLTE-LPELP--QSLKSLLVDNNNLKAL-SDLP--PLLEYLGVSNNQLEK-LP-ELQNSSFLKI 157 (454)
T ss_dssp ---CCTTCSEEECCSSCCSS-CCCCC--TTCCEEECCSSCCSCC-CSCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCE
T ss_pred ---CcCCCCEEEccCCcCCc-ccccc--CCCcEEECCCCccCcc-cCCC--CCCCEEECcCCCCCC-Cc-ccCCCCCCCE
Confidence 13566666666666663 44322 5566666666666531 1111 355666666666654 44 3666666666
Q ss_pred EEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCC
Q 043930 231 IILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310 (629)
Q Consensus 231 L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 310 (629)
|++++|++++ ++.. ..+|++|+|++|++++ ++ .|.++.+|++|+|++|.++++ +.. ..+|++|+|++|
T Consensus 158 L~l~~N~l~~-lp~~-----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDL-----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNN 225 (454)
T ss_dssp EECCSSCCSC-CCCC-----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSS
T ss_pred EECCCCcCcc-cCCC-----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCC
Confidence 6666666652 3322 2355566666655553 33 355555555555555555541 111 124455555555
Q ss_pred ccCCcchhhhcCCCCCceecccCCccc
Q 043930 311 FFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 311 ~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
.+..+. .+.++.+|++|++++|.+.
T Consensus 226 ~l~~lp--~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 226 ILEELP--ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred cCCccc--ccCCCCCCCEEECCCCcCC
Confidence 444322 2444444445554444444
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.3e-24 Score=213.46 Aligned_cols=226 Identities=16% Similarity=0.169 Sum_probs=184.9
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+..+..+++.++.+.+.+ .+..+.+|++|++++|.+... ..+..+++|++|+|++|.+++. ..+..+.+|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 344556677777776543 466789999999999998853 4588899999999999999873 4688999999999
Q ss_pred ccCCcCccCCCchhc-c-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccc
Q 043930 163 LRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS 239 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 239 (629)
|++|+|+ .+....+ . .+|++|+|++|.+++.....++. .+|++|++++|++++.....|+++.+|++|+|++|+|+
T Consensus 92 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 92 LTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 9999998 4544443 3 89999999999999766665654 58999999999999777777889999999999999998
Q ss_pred ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhh
Q 043930 240 GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMEC 319 (629)
Q Consensus 240 ~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 319 (629)
+.....+. .+.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+ .+.+|+.|++.+|.+.|.++..
T Consensus 171 ~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 171 SLPEGVFD--KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHhc--CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 65555555 78999999999999998777778899999999999998764 4668899999999999888877
Q ss_pred hcCCC
Q 043930 320 ISGSR 324 (629)
Q Consensus 320 l~~l~ 324 (629)
+..+.
T Consensus 242 ~~~~~ 246 (272)
T 3rfs_A 242 AGSVA 246 (272)
T ss_dssp TSCBC
T ss_pred ccccC
Confidence 66543
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=7.3e-24 Score=217.24 Aligned_cols=227 Identities=13% Similarity=0.036 Sum_probs=142.9
Q ss_pred cEEEEEcCCCCccccCch---hhhCCcCCCEEECCCCCCCccChhhh--cCCCCCcEEEccCCcCCCCch----hhhhCC
Q 043930 85 FVAMIDLNKAEIAAHLPP---EMGWLLDLIYFHANTNRLCGIIPETF--ANMHRLEEFDVSNNRLVGPFP----TVALTW 155 (629)
Q Consensus 85 ~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~l~~l 155 (629)
.++.|++.++.+...... .+..+.+|++|+|++|++.+..+..+ .++.+|++|+|++|.|.+... ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355666666655432111 11223557777777777766666655 667777777777777765332 233456
Q ss_pred CCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEcc
Q 043930 156 KRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILM 234 (629)
Q Consensus 156 ~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 234 (629)
.+|++|+|++|+|++.....+.. .+|++|+|++|.+.+... + .....++.+.+|++|+|+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------~---------~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG----------L---------MAALCPHKFPAIQNLALR 205 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------H---------HTTSCTTSSCCCCSCBCC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------h---------hHHHhhhcCCCCCEEECC
Confidence 67777777777776433333333 667777777766542100 0 011234567788888888
Q ss_pred CCcccccCCc---c-cccCCCCCCcEEEecCCcccccchHHhhcc---cCccceecccccccccccccccCCCCCcEEEe
Q 043930 235 ENQLSGCLPS---E-IGSGEYKNLTVFDIRSNKFHGSVPQSFANL---NNIMRLDISDNMLTGFVSADICKLPHLLNFTF 307 (629)
Q Consensus 235 ~n~l~~~~p~---~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L 307 (629)
+|+|+ .+.. . +. .+.+|++|+|++|+|++.++..+..+ .+|++|+|++|+|+. ++..+. .+|++|+|
T Consensus 206 ~N~l~-~l~~~~~~l~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 206 NTGME-TPTGVCAALAA--AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDL 279 (310)
T ss_dssp SSCCC-CHHHHHHHHHH--HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEEC
T ss_pred CCCCC-chHHHHHHHHh--cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEEC
Confidence 88886 2222 1 22 56788888888888887666556655 588888888888884 455443 68888888
Q ss_pred cCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 308 SNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 308 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
++|+|+++. .+..+.+|++|+|++|.|++
T Consensus 280 s~N~l~~~~--~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 280 SSNRLNRAP--QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred CCCcCCCCc--hhhhCCCccEEECcCCCCCC
Confidence 888888752 25677888888888888765
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.1e-22 Score=204.16 Aligned_cols=204 Identities=16% Similarity=0.142 Sum_probs=171.6
Q ss_pred hhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCE
Q 043930 104 MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI 183 (629)
Q Consensus 104 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~ 183 (629)
++++.+|++|++++|+++. ++..+ ..+|++|+|++|.|++.....|..+.+|++|+|++|+|+ .+.......+|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCE
Confidence 5678899999999999985 44433 368999999999999877888999999999999999998 4444333378888
Q ss_pred EEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930 184 IFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263 (629)
Q Consensus 184 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~ 263 (629)
|+|++|.|+ .++..+.++.+|++|+|++|+|++..+..|. .+.+|++|+|++|+
T Consensus 82 L~Ls~N~l~------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 82 LDLSHNQLQ------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALR--GLGELQELYLKGNE 135 (290)
T ss_dssp EECCSSCCS------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTTSC
T ss_pred EECCCCcCC------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCCCC
Confidence 888888776 3345577889999999999999965556666 79999999999999
Q ss_pred ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
|++.....|..+.+|++|+|++|+|+++....|.++.+|++|+|++|+|+.+ +..+..+..|++|+|.+|.+.+
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccC
Confidence 9977777788999999999999999987767788899999999999999965 4456667899999999998875
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.9e-24 Score=223.46 Aligned_cols=233 Identities=13% Similarity=0.107 Sum_probs=183.1
Q ss_pred cccEEEEEcCCCCccccCc----hhhhCCc-CCCEEECCCCCCCccChhhhcCC-----CCCcEEEccCCcCCCCchhhh
Q 043930 83 ERFVAMIDLNKAEIAAHLP----PEMGWLL-DLIYFHANTNRLCGIIPETFANM-----HRLEEFDVSNNRLVGPFPTVA 152 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~l 152 (629)
..+|+.|||++|+|.+... ..|.++. +|++|+|++|+|.+.....|..+ .+|++|+|++|.|++.....+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3459999999999988776 7788888 89999999999998777777665 999999999999987666644
Q ss_pred h----CC-CCCcEEEccCCcCccCCCchhcc------CCCCEEEecCccccccCchhhhh------hhhHHHHhcCCccc
Q 043930 153 L----TW-KRNLYLDLRFNNFEGELPPELFQ------TGLDIIFLNHNWFRGSIPETIGE------SLARYIVLSSNNFT 215 (629)
Q Consensus 153 ~----~l-~~L~~L~Ls~n~l~~~ip~~~~~------~~L~~L~L~~n~l~~~~~~~~~~------~~L~~L~l~~n~l~ 215 (629)
. .+ .+|++|+|++|+|++.....+.. .+|++|+|++|.|++.....+.. .+|++|+|++|+++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4 44 89999999999998555444322 58999999999999765554432 37999999999998
Q ss_pred ccCCcc----ccCC-CCCcEEEccCCccccc----CCcccccCCCCCCcEEEecCCcccccchH----HhhcccCcccee
Q 043930 216 GCLPRS----IGYM-KELQEIILMENQLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQ----SFANLNNIMRLD 282 (629)
Q Consensus 216 ~~~~~~----l~~l-~~L~~L~Ls~n~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~ 282 (629)
+..... +..+ .+|++|+|++|.|++. +...+.. ...+|++|+|++|.|++.... .+..+.+|++|+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 765543 4445 6999999999999853 3334431 246999999999999876543 345678999999
Q ss_pred cccccccccc-------cccccCCCCCcEEEecCCccCCcc
Q 043930 283 ISDNMLTGFV-------SADICKLPHLLNFTFSNNFFQGMA 316 (629)
Q Consensus 283 Ls~N~l~~~~-------~~~l~~l~~L~~L~L~~N~l~~~~ 316 (629)
|++|.+.++. ...+.++.+|++|||++|.|.+..
T Consensus 260 L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp EEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred eccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 9999955432 335667889999999999998763
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.1e-22 Score=201.90 Aligned_cols=192 Identities=19% Similarity=0.241 Sum_probs=126.7
Q ss_pred CCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCC
Q 043930 66 DVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLV 145 (629)
Q Consensus 66 ~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 145 (629)
.|+.|.|..|. ...+.++++++++.. ++..+. .+|++|+|++|+|.+.....|.++.+|++|+|++|.|+
T Consensus 3 ~Cp~~~gC~C~-------~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 3 TCETVTGCTCN-------EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp -CHHHHSSEEE-------GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCceEcC-------CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC
Confidence 35567777774 235678899888865 444443 58889999999998887778888999999999999988
Q ss_pred CCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCC
Q 043930 146 GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYM 225 (629)
Q Consensus 146 ~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l 225 (629)
+.....|..+.+|++|+|++|+|+ .++.. .|.++
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~---------------------------------------------~~~~l 106 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQLA-SLPLG---------------------------------------------VFDHL 106 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCC-CCCTT---------------------------------------------TTTTC
T ss_pred ccCHhHhccCCcCCEEECCCCccc-ccChh---------------------------------------------Hhccc
Confidence 877777888888888888888876 33222 23444
Q ss_pred CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEE
Q 043930 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF 305 (629)
Q Consensus 226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 305 (629)
.+|++|+|++|+|++.....+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++....|.++.+|++|
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCcCCCcChhHhc--cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 5555556655555533222233 45566666666666654444455566666666666666665555556666666666
Q ss_pred EecCCccCCc
Q 043930 306 TFSNNFFQGM 315 (629)
Q Consensus 306 ~L~~N~l~~~ 315 (629)
+|++|.|.+.
T Consensus 185 ~l~~N~~~c~ 194 (251)
T 3m19_A 185 TLFGNQFDCS 194 (251)
T ss_dssp ECCSCCBCTT
T ss_pred EeeCCceeCC
Confidence 6666666543
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=214.65 Aligned_cols=204 Identities=16% Similarity=0.116 Sum_probs=158.3
Q ss_pred ccEEEEEcCCCCccccCchhh--hCCcCCCEEECCCCCCCccCh----hhhcCCCCCcEEEccCCcCCCCchhhhhCCCC
Q 043930 84 RFVAMIDLNKAEIAAHLPPEM--GWLLDLIYFHANTNRLCGIIP----ETFANMHRLEEFDVSNNRLVGPFPTVALTWKR 157 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 157 (629)
.+|++|+|++|++.+.++..+ +.+.+|++|+|++|++.+... ..+..+.+|++|+|++|+|.+.....+..+.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 449999999999999988888 899999999999999987433 44568999999999999999888888999999
Q ss_pred CcEEEccCCcCccC--CCchh--cc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEE
Q 043930 158 NLYLDLRFNNFEGE--LPPEL--FQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEII 232 (629)
Q Consensus 158 L~~L~Ls~n~l~~~--ip~~~--~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 232 (629)
|++|||++|++.+. +.... .. .+|++|+|++|.++.. ... ....++++.+|++|+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~-------------------~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGV-------------------CAALAAAGVQPHSLD 230 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHH-------------------HHHHHHHTCCCSSEE
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHH-------------------HHHHHhcCCCCCEEE
Confidence 99999999998642 21112 12 6788888888887621 110 001145667888889
Q ss_pred ccCCcccccCCcccccCCC---CCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecC
Q 043930 233 LMENQLSGCLPSEIGSGEY---KNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSN 309 (629)
Q Consensus 233 Ls~n~l~~~~p~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~ 309 (629)
|++|+|++.++..++ .+ .+|++|+|++|+|+ .++..+. .+|++|+|++|+|+++ + .+..+.+|++|+|++
T Consensus 231 Ls~N~l~~~~p~~~~--~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 231 LSHNSLRATVNPSAP--RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDG 303 (310)
T ss_dssp CTTSCCCCCCCSCCS--SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSS
T ss_pred CCCCCCCccchhhHH--hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCccEEECcC
Confidence 988888876666665 34 68999999999888 5555553 6899999999998874 2 267788999999999
Q ss_pred CccCC
Q 043930 310 NFFQG 314 (629)
Q Consensus 310 N~l~~ 314 (629)
|.|++
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 98875
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.7e-22 Score=206.85 Aligned_cols=195 Identities=17% Similarity=0.304 Sum_probs=148.8
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
.+.+|+.|++++|++... . .+..+.+|++|+|++|++.+... |.++.+|++|+|++|+|++. ..+..+.+|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 356688888888887653 2 57788888888888888876433 78888888888888888763 357788888888
Q ss_pred EccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930 162 DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 241 (629)
+|++|+++ .+.......+|++|+|++|.+++. . .|+++.+|++|+|++|++++
T Consensus 113 ~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~------------------------~-~l~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 113 DLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNI------------------------S-PLAGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp ECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCC------------------------G-GGGGCTTCCEEECCSSCCCC-
T ss_pred ECCCCCCC-CchhhcCCCCCCEEECCCCccCcC------------------------c-cccCCCCccEEEccCCcCCC-
Confidence 88888887 444322227777777777766522 1 16678899999999999984
Q ss_pred CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcc
Q 043930 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA 316 (629)
Q Consensus 242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 316 (629)
+.. +. .+.+|++|+|++|+|++... +..+.+|++|+|++|.|.+.. .+.++.+|++|+|++|.|++..
T Consensus 166 ~~~-l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 166 LTP-LA--NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CGG-GT--TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred Chh-hc--CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 333 44 78999999999999985443 788999999999999998764 3888999999999999987743
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=3.5e-23 Score=230.36 Aligned_cols=226 Identities=21% Similarity=0.239 Sum_probs=158.5
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
.+|+.|+|++|+|.. ++. .+.+|++|+|++|+|++ ++. .+.+|++|+|++|.|++. +. .+.+|++|+|
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence 578889999988875 443 57889999999998875 333 678899999999988873 33 5678888888
Q ss_pred cCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 164 RFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 164 s~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
++|+|+ .++..+ .+|++|+|++|.|++ ++..+ .+|+.|++++|.|++ ++ ..+.+|++|+|++|.|++ ++
T Consensus 129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~~--~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~ 197 (622)
T 3g06_A 129 FGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPALP--SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LP 197 (622)
T ss_dssp CSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred CCCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCcc--CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CC
Confidence 888887 565533 788888888888874 22221 345555566665553 22 233555555555555552 22
Q ss_pred ccccc---------------CCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEec
Q 043930 244 SEIGS---------------GEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS 308 (629)
Q Consensus 244 ~~~~~---------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 308 (629)
..+.. ..+.+|++|+|++|+|++ ++ ..+.+|++|+|++|.|+++ +. .+.+|++|+|+
T Consensus 198 ~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls 269 (622)
T 3g06_A 198 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVY 269 (622)
T ss_dssp CCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECC
T ss_pred CccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCC
Confidence 11100 023678888888888875 33 4567889999999988853 33 56789999999
Q ss_pred CCccCCcchhhhcCCCCCceecccCCccccccc
Q 043930 309 NNFFQGMAMECISGSRDDVYFEEKGNCLAEMEY 341 (629)
Q Consensus 309 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 341 (629)
+|+|+.+ +..|.++.+|++|+|++|.|.+...
T Consensus 270 ~N~L~~l-p~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 270 RNQLTRL-PESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SSCCCSC-CGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCCcC-CHHHhhccccCEEEecCCCCCCcCH
Confidence 9999955 5678899999999999999986543
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=7.9e-22 Score=197.89 Aligned_cols=182 Identities=20% Similarity=0.250 Sum_probs=155.8
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
...|+.|+|++|+|.+.....|.++.+|++|+|++|+|.+.....|.++.+|++|+|++|+|++.....+..+.+|++|+
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 45699999999999987777899999999999999999977777789999999999999999987777789999999999
Q ss_pred ccCCcCccCCCchhc-c-CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccc
Q 043930 163 LRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSG 240 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 240 (629)
|++|+|+ .+....+ . .+|++|+|++|.|++. ....|.++.+|++|+|++|+|++
T Consensus 116 l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------------~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL-----------------------PKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccC-eeCHHHhCcCcCCCEEECCCCcCCcc-----------------------CHhHccCCcccceeEecCCcCcE
Confidence 9999998 4544443 3 8899999988877622 22347788999999999999996
Q ss_pred cCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccc
Q 043930 241 CLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG 290 (629)
Q Consensus 241 ~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 290 (629)
.....+. .+.+|++|+|++|+|++.....|..+.+|++|+|++|.+..
T Consensus 172 ~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFD--KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhc--cCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 5555565 78999999999999997777778899999999999999864
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.8e-22 Score=203.39 Aligned_cols=198 Identities=15% Similarity=0.214 Sum_probs=157.6
Q ss_pred hhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCE
Q 043930 104 MGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDI 183 (629)
Q Consensus 104 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~ 183 (629)
+..+.+|++|++++|++... . .|..+.+|++|+|++|.|.+... +..+.+|++|+|++|+++ .+.......+|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-CchhhcCCCCCCE
Confidence 45678899999999988853 3 68889999999999999987443 888999999999999987 4543222278888
Q ss_pred EEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc
Q 043930 184 IFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK 263 (629)
Q Consensus 184 L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~ 263 (629)
|+|++|.+++. ..|.++.+|++|+|++|++++.. . +. .+.+|++|+|++|+
T Consensus 112 L~l~~n~l~~~-------------------------~~l~~l~~L~~L~l~~n~l~~~~-~-l~--~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 112 LDLTSTQITDV-------------------------TPLAGLSNLQVLYLDLNQITNIS-P-LA--GLTNLQYLSIGNAQ 162 (308)
T ss_dssp EECTTSCCCCC-------------------------GGGTTCTTCCEEECCSSCCCCCG-G-GG--GCTTCCEEECCSSC
T ss_pred EECCCCCCCCc-------------------------hhhcCCCCCCEEECCCCccCcCc-c-cc--CCCCccEEEccCCc
Confidence 88888877621 12677889999999999988443 2 44 78899999999999
Q ss_pred ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccccc
Q 043930 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEY 341 (629)
Q Consensus 264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 341 (629)
|++... +..+.+|++|+|++|.|++... +.++.+|++|+|++|.|.++. .+..+.+|++|+|++|.|++...
T Consensus 163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 985433 8889999999999999987543 788899999999999998876 37888999999999999886543
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6e-22 Score=194.95 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=118.8
Q ss_pred CCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-CCCCchhhhhCCCCCcEEEccC-CcCccCCCchhcc--CCCCEE
Q 043930 109 DLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-LVGPFPTVALTWKRNLYLDLRF-NNFEGELPPELFQ--TGLDII 184 (629)
Q Consensus 109 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~ip~~~~~--~~L~~L 184 (629)
+|++|+|++|+|++.....|.++.+|++|+|++|+ +++.....|.++.+|++|+|++ |+|+ .++...|. .+|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 67777777777776665667777777777777775 6654445667777777777776 7776 44433332 567777
Q ss_pred EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCc---EEEccCC-cccccCCcccccCCCCCCc-EEEe
Q 043930 185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQ---EIILMEN-QLSGCLPSEIGSGEYKNLT-VFDI 259 (629)
Q Consensus 185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~p~~~~~~~l~~L~-~L~L 259 (629)
+|++|.+++ ++ . |.++.+|+ +|+|++| ++++.....+. .+.+|+ +|+|
T Consensus 111 ~l~~n~l~~-lp-----------------------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--~l~~L~~~L~l 163 (239)
T 2xwt_C 111 GIFNTGLKM-FP-----------------------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--GLCNETLTLKL 163 (239)
T ss_dssp EEEEECCCS-CC-----------------------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTT--TTBSSEEEEEC
T ss_pred eCCCCCCcc-cc-----------------------c-cccccccccccEEECCCCcchhhcCccccc--chhcceeEEEc
Confidence 777766652 21 1 33344444 6677666 66643333344 566666 7777
Q ss_pred cCCcccccchHHhhcccCccceeccccc-ccccccccccCC-CCCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930 260 RSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICKL-PHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN 334 (629)
Q Consensus 260 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 334 (629)
++|+|+..-...|.. .+|++|+|++|+ |+++....|.++ .+|++|+|++|.|+++... .+.+|++|++.++
T Consensus 164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 777666322222333 567777777773 665555556666 6777777777777655433 4556666666554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.8e-23 Score=214.22 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=184.7
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCcc-ChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGI-IPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
.+++.|++++|.+.+.... +.++.+|++|+|++|.+.+. +...+.++.+|++|+|++|.+++.+...+..+.+|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6789999999999887654 56789999999999998865 777889999999999999999887888899999999999
Q ss_pred ccCC-cCccC-CCchhcc-CCCCEEEecCc-ccccc-Cchhhhh-h-hhHHHHhcCC--ccc-ccCCccccCCCCCcEEE
Q 043930 163 LRFN-NFEGE-LPPELFQ-TGLDIIFLNHN-WFRGS-IPETIGE-S-LARYIVLSSN--NFT-GCLPRSIGYMKELQEII 232 (629)
Q Consensus 163 Ls~n-~l~~~-ip~~~~~-~~L~~L~L~~n-~l~~~-~~~~~~~-~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~ 232 (629)
|++| .+++. +...+.. .+|++|+|++| .+++. +...+.. . +|++|+|++| .++ +.+...+.++++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 67642 3333333 89999999999 88864 3444444 4 7999999999 455 44566778899999999
Q ss_pred ccCCc-ccccCCcccccCCCCCCcEEEecCC-cccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCC
Q 043930 233 LMENQ-LSGCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310 (629)
Q Consensus 233 Ls~n~-l~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 310 (629)
|++|. +++.....+. .+.+|++|+|++| .+.......|.++++|++|+|++| +.......+. .+|+.|+|++|
T Consensus 229 l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n 303 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFF--QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS 303 (336)
T ss_dssp CTTCTTCCGGGGGGGG--GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred CCCCCcCCHHHHHHHh--CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence 99999 7766677776 7899999999999 455444456888999999999999 6543333332 34677779999
Q ss_pred ccCCcchhhhcC
Q 043930 311 FFQGMAMECISG 322 (629)
Q Consensus 311 ~l~~~~~~~l~~ 322 (629)
++++.....+..
T Consensus 304 ~l~~~~~~~~~~ 315 (336)
T 2ast_B 304 HFTTIARPTIGN 315 (336)
T ss_dssp CSCCTTCSSCSS
T ss_pred cCccccCCcccc
Confidence 999987765553
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=7.8e-22 Score=194.13 Aligned_cols=198 Identities=15% Similarity=0.171 Sum_probs=164.2
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCC-CCccChhhhcCCCCCcEEEccC-CcCCCCchhhhhCCCCCcE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR-LCGIIPETFANMHRLEEFDVSN-NRLVGPFPTVALTWKRNLY 160 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~ 160 (629)
...|+.|+|++|+|.++....|+++.+|++|+|++|+ ++++....|.++.+|++|+|++ |+|++.....|.++.+|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3479999999999998887889999999999999997 8877777899999999999998 9999866678899999999
Q ss_pred EEccCCcCccCCCchhcc-CCCC---EEEecCc-cccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCc-EEEcc
Q 043930 161 LDLRFNNFEGELPPELFQ-TGLD---IIFLNHN-WFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQ-EIILM 234 (629)
Q Consensus 161 L~Ls~n~l~~~ip~~~~~-~~L~---~L~L~~n-~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~Ls 234 (629)
|+|++|+++ .++. +.. .+|+ +|+|++| .++ +.....|.++.+|+ +|+|+
T Consensus 110 L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~-----------------------~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMT-----------------------SIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCC-----------------------EECTTTTTTTBSSEEEEECC
T ss_pred EeCCCCCCc-cccc-cccccccccccEEECCCCcchh-----------------------hcCcccccchhcceeEEEcC
Confidence 999999998 5776 322 6666 7777777 655 23334577889999 99999
Q ss_pred CCcccccCCcccccCCCCCCcEEEecCCc-ccccchHHhhcc-cCccceecccccccccccccccCCCCCcEEEecCCc
Q 043930 235 ENQLSGCLPSEIGSGEYKNLTVFDIRSNK-FHGSVPQSFANL-NNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNF 311 (629)
Q Consensus 235 ~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~ 311 (629)
+|+|+ .++...+ ...+|++|+|++|+ |++.....|.++ .+|++|+|++|.|+++... .+.+|+.|+++++.
T Consensus 165 ~n~l~-~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 165 NNGFT-SVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp SCCCC-EECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCc-ccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 99998 6666555 34789999999995 986667788899 9999999999999864333 67899999998764
No 89
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=2.2e-21 Score=215.93 Aligned_cols=257 Identities=17% Similarity=0.202 Sum_probs=181.9
Q ss_pred CCCCCCcchhhhcCCCcccccchhhhHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCceecCCCCCCCcccEEEEEcC
Q 043930 13 KDGKLPNDFEDQYDLKDKTFESHRMKMAYVGLQAFKKAIYSDPYNHTENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLN 92 (629)
Q Consensus 13 ~~~~i~~~l~~l~~L~~L~ls~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~ 92 (629)
....|+..+. .+|++|++++|++..... ....+... ....|.+.++.. .+.+|+.|+|+
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~------------~l~~L~~L-~Ls~N~l~~lp~------~l~~L~~L~Ls 109 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA------------LPPELRTL-EVSGNQLTSLPV------LPPGLLELSIF 109 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCCCSCCCC------------CCTTCCEE-EECSCCCSCCCC------CCTTCCEEEEC
T ss_pred CcCccChhhC--CCCcEEEecCCCCCCCCC------------cCCCCCEE-EcCCCcCCcCCC------CCCCCCEEECc
Confidence 3456666654 678888888887653211 00011110 111222222111 45678888888
Q ss_pred CCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCC
Q 043930 93 KAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGEL 172 (629)
Q Consensus 93 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~i 172 (629)
+|+|.+. +. .+.+|++|+|++|+|++ ++. .+.+|++|+|++|.|++ ++. .+.+|+.|+|++|+|+ .+
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l 176 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SL 176 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CC
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CC
Confidence 8888663 22 56778888888888875 332 35788888888888876 222 3567888888888887 56
Q ss_pred CchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCC
Q 043930 173 PPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYK 252 (629)
Q Consensus 173 p~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~ 252 (629)
+ ....+|++|+|++|.|++ ++..+ .+|+.|++++|.++. ++. .+.+|++|+|++|+|++ ++ . .+.
T Consensus 177 ~--~~~~~L~~L~Ls~N~l~~-l~~~~--~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~--~l~ 241 (622)
T 3g06_A 177 P--MLPSGLQELSVSDNQLAS-LPTLP--SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---V--LPS 241 (622)
T ss_dssp C--CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---C--CCT
T ss_pred c--ccCCCCcEEECCCCCCCC-CCCcc--chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---C--CCC
Confidence 5 223789999999999885 33322 578888999998884 333 34789999999999984 44 2 578
Q ss_pred CCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 253 NLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 253 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
+|++|+|++|+|++ ++. .+.+|++|+|++|.|+. ++..|.++.+|+.|+|++|.|.+.....+..+
T Consensus 242 ~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 242 ELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 99999999999994 544 67899999999999994 67889999999999999999998877766644
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.4e-21 Score=193.80 Aligned_cols=178 Identities=18% Similarity=0.167 Sum_probs=135.5
Q ss_pred CcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhhhhhHHHHhcCC
Q 043930 134 LEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSN 212 (629)
Q Consensus 134 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 212 (629)
+++++++++.++. ++..+. .+|++|+|++|+|++.....+.. .+|++|+|++ |
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------------------n 69 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-----------------------N 69 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-----------------------S
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-----------------------C
Confidence 4555666555553 332222 35555555555555322222222 4455555554 4
Q ss_pred cccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930 213 NFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV 292 (629)
Q Consensus 213 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 292 (629)
.|.+.....|.++.+|++|+|++|+|++.....+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|+++.
T Consensus 70 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 70 QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD--HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCccCHhHhccCCcCCEEECCCCcccccChhHhc--ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 45445556788899999999999999965555665 7999999999999999777777899999999999999999877
Q ss_pred cccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 293 SADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 293 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
...|.++.+|++|+|++|+|.++....|..+.+|++|+|++|.|.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77899999999999999999999888999999999999999999764
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=1.5e-22 Score=226.24 Aligned_cols=258 Identities=14% Similarity=0.060 Sum_probs=168.2
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCC--------------------------CccChhhhcCCCCCcE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRL--------------------------CGIIPETFANMHRLEE 136 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l--------------------------~~~~~~~~~~l~~L~~ 136 (629)
+.+|+.|+|++|.+.+ ++..+.++.+|++|+++++.. .+.++..+..+.+|++
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 4567888888877765 445666666666666653211 1234445566677777
Q ss_pred EEccCCcCCCCch-hhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecC-----------ccccccCchhhh--
Q 043930 137 FDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNH-----------NWFRGSIPETIG-- 200 (629)
Q Consensus 137 L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~-----------n~l~~~~~~~~~-- 200 (629)
|+|++|.+++... ..+..+.+|++|+|+ +.+.+.....++. .+|++|+|++ |.+++.....+.
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 7777777654322 334667777777777 3333222222222 6788888883 455543222222
Q ss_pred hhhhHHHHhcCCcccccCCccccC-CCCCcEEEcc----CCccccc-----CCcccccCCCCCCcEEEecCCc--ccccc
Q 043930 201 ESLARYIVLSSNNFTGCLPRSIGY-MKELQEIILM----ENQLSGC-----LPSEIGSGEYKNLTVFDIRSNK--FHGSV 268 (629)
Q Consensus 201 ~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~--l~~~~ 268 (629)
..+|++|+++.|++++.....+.. +++|++|+|+ .|++++. +...+. .+.+|++|+|++|. +++..
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~--~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI--GCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH--HCTTCCEEEEECCGGGCCHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH--hCCCCCEEEEecCCCCccHHH
Confidence 246888888888887665555554 7888888886 5666642 222233 57889999998653 66555
Q ss_pred hHHhhc-ccCccceecccccccccc-cccccCCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccccccCC
Q 043930 269 PQSFAN-LNNIMRLDISDNMLTGFV-SADICKLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEMEYQKL 344 (629)
Q Consensus 269 ~~~~~~-l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 344 (629)
...+.. +++|++|+|++|.+++.. ...+.++.+|++|+|++|.|++.. ...+..+++|++|+|++|.+++..+...
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 555554 788999999999988643 344577899999999999987653 3445678999999999999987655443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=4.1e-20 Score=177.70 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=118.7
Q ss_pred CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEE
Q 043930 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDII 184 (629)
Q Consensus 107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L 184 (629)
..+|++|+|++|++.+.....|.++.+|++|+|++|+|++.....|..+.+|++|+|++|+|+ .++...+. .+|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEE
Confidence 457889999999888777677888899999999999888766666788889999999998887 44444332 677777
Q ss_pred EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930 185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264 (629)
Q Consensus 185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l 264 (629)
+|++|.|++. ....|.++.+|++|+|++|+|++.....+. .+.+|++|+|++|.+
T Consensus 106 ~L~~N~l~~~-----------------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 106 ALNTNQLQSL-----------------------PDGVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNPW 160 (208)
T ss_dssp ECCSSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCCB
T ss_pred EcCCCcCccc-----------------------CHhHhccCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCCe
Confidence 7777666522 223456777888888888888754444444 678888888888877
Q ss_pred cccchHHhhcccCccceecccccccccccccccCCCC
Q 043930 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPH 301 (629)
Q Consensus 265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 301 (629)
.+ .+.+|++|++++|+++|.++..++.+..
T Consensus 161 ~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 DC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 63 3457788888888888877776665543
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=8.9e-21 Score=210.72 Aligned_cols=173 Identities=18% Similarity=0.204 Sum_probs=81.9
Q ss_pred hCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEE
Q 043930 105 GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDII 184 (629)
Q Consensus 105 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L 184 (629)
..|.+|++|+|++|.|... ..|..|.+|++|+|++|+|.+... +..+.+|++|+|++|+|+ .+.......+|++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCTTSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CChhhccCCCCCEE
Confidence 3444455555555554432 134445555555555555544222 444555555555555554 22211111445555
Q ss_pred EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930 185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264 (629)
Q Consensus 185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l 264 (629)
+|++|.|.+ +.......+|+.|+|++|.|.+. ..|+.|.+|++|+|++|.|.+..+ +. .+.+|++|+|++|+|
T Consensus 115 ~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA--GLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCC
T ss_pred EecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hc--cCCCCCEEECcCCCC
Confidence 555444442 11110111222222222222222 345556666666666666664433 33 566666666666666
Q ss_pred cccchHHhhcccCccceeccccccccc
Q 043930 265 HGSVPQSFANLNNIMRLDISDNMLTGF 291 (629)
Q Consensus 265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 291 (629)
++. ..|..|.+|+.|+|++|.|.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCC
Confidence 643 3456666666666666666543
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=2.2e-20 Score=189.45 Aligned_cols=170 Identities=19% Similarity=0.286 Sum_probs=101.8
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+.+|+.|++++|++... ..+..+.+|++|+|++|++.+... |.++.+|++|+|++|+|++ + ..+..+.+|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 45566777777766543 346666777777777777665432 6667777777777776665 2 2366666677777
Q ss_pred ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930 163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 242 (629)
|++|+|+ .+.......+|++|+|++|.+++ . ..|+++.+|++|+|++|+|++..
T Consensus 119 L~~n~i~-~~~~l~~l~~L~~L~l~~n~l~~-----------------------~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 119 LEHNGIS-DINGLVHLPQLESLYLGNNKITD-----------------------I--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp CTTSCCC-CCGGGGGCTTCCEEECCSSCCCC-----------------------C--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCCcCC-CChhhcCCCCCCEEEccCCcCCc-----------------------c--hhhccCCCCCEEEccCCccccch
Confidence 7666665 33221112555555555555441 1 23555667777777777766433
Q ss_pred CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccc
Q 043930 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG 290 (629)
Q Consensus 243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 290 (629)
+ +. .+.+|++|+|++|.|++. . .+..+.+|+.|+|++|.+.+
T Consensus 173 ~--l~--~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LA--GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GT--TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hc--CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 2 33 566777777777776642 2 36666677777777776654
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=1.6e-20 Score=190.38 Aligned_cols=195 Identities=16% Similarity=0.192 Sum_probs=150.8
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEE
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLD 162 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 162 (629)
+..+..+++..+.+.+.+ .+..+.+|++|++++|.+.+. ..+..+.+|++|+|++|+|++... +..+.+|++|+
T Consensus 23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 344555567777665543 346788899999999988854 358889999999999999987543 88899999999
Q ss_pred ccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC
Q 043930 163 LRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL 242 (629)
Q Consensus 163 Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 242 (629)
|++|+++ .+.......+|++|+|++|.+++. ..+..+.+|++|+|++|+|++.
T Consensus 97 l~~n~l~-~~~~l~~l~~L~~L~L~~n~i~~~-------------------------~~l~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 97 LDENKVK-DLSSLKDLKKLKSLSLEHNGISDI-------------------------NGLVHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp CCSSCCC-CGGGGTTCTTCCEEECTTSCCCCC-------------------------GGGGGCTTCCEEECCSSCCCCC-
T ss_pred CCCCcCC-CChhhccCCCCCEEECCCCcCCCC-------------------------hhhcCCCCCCEEEccCCcCCcc-
Confidence 9999987 444322227788888888877621 2356778999999999999853
Q ss_pred CcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930 243 PSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM 317 (629)
Q Consensus 243 p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 317 (629)
..+. .+.+|++|+|++|+|++... +..+.+|++|+|++|.|+++ ..+.++.+|+.|+|++|.+.+...
T Consensus 150 -~~l~--~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 150 -TVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -GGGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred -hhhc--cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCCcc
Confidence 4555 78999999999999986544 88899999999999999874 348889999999999998876543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.1e-21 Score=198.41 Aligned_cols=220 Identities=14% Similarity=0.069 Sum_probs=110.2
Q ss_pred cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCch-hhhhCCCCCcE-EEccCCcCccCCCchhcc--CCCCE
Q 043930 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLY-LDLRFNNFEGELPPELFQ--TGLDI 183 (629)
Q Consensus 108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~-L~Ls~n~l~~~ip~~~~~--~~L~~ 183 (629)
++|++|+|++|+|+.+..++|.++.+|++|+|++|++.+.++ ..|.++.+|++ +++++|+|+ .+....|. .+|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhcccccc
Confidence 345555555555554433445555555555555555543332 23444444443 334445554 33322222 45555
Q ss_pred EEecCccccccCchhhh-hhhhHHHHhcC-CcccccCCccccCC-CCCcEEEccCCcccccCCcccccCCCCCCcEEEec
Q 043930 184 IFLNHNWFRGSIPETIG-ESLARYIVLSS-NNFTGCLPRSIGYM-KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260 (629)
Q Consensus 184 L~L~~n~l~~~~~~~~~-~~~L~~L~l~~-n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls 260 (629)
|++++|.|++.....+. ...+..|++.+ +++.......|..+ ..|++|+|++|+|+ .++..++ ...+|++|+++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f--~~~~L~~l~l~ 185 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF--NGTQLDELNLS 185 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS--TTEEEEEEECT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc--cccchhHHhhc
Confidence 55555555433222221 12334444433 33443333344444 35667777777776 4444444 34567777776
Q ss_pred C-CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCc
Q 043930 261 S-NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNC 335 (629)
Q Consensus 261 ~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~ 335 (629)
+ |.++..-.+.|.++.+|++|||++|+|+.+.... +.+|+.|.+.++.-....+ .+.++.+|+.+++.++.
T Consensus 186 ~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred cCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 4 4555333345677777777777777777543333 3344445444432222222 35566777777766543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=7.5e-21 Score=209.11 Aligned_cols=196 Identities=21% Similarity=0.331 Sum_probs=133.7
Q ss_pred CcCce-ecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCC
Q 043930 69 QYNGV-LCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGP 147 (629)
Q Consensus 69 ~~~g~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 147 (629)
.|.++ .|. ..+|+.|+|++|+|.+ ++..+ +.+|++|+|++|+|+. ++ ..+.+|++|+|++|.|++
T Consensus 49 ~~~~l~~C~------~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~- 114 (571)
T 3cvr_A 49 AVSLLKECL------INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST- 114 (571)
T ss_dssp HHHHHHHHH------HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred hhhhccccc------cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-
Confidence 46666 564 2469999999999987 66555 3789999999999984 55 567899999999999988
Q ss_pred chhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCC
Q 043930 148 FPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKE 227 (629)
Q Consensus 148 ~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 227 (629)
++. +.. +|++|+|++|+|++ ++. ...+|++|+|++|.|++ ++. ...+|++|+|++|.|++ ++. |. .+
T Consensus 115 ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~ 181 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ES 181 (571)
T ss_dssp CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TT
T ss_pred cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CC
Confidence 555 544 89999999999984 776 45889999999998885 443 22456666666666664 444 43 56
Q ss_pred CcEEEccCCcccccCCcccccCCCCCC-------cEEEecCCcccccchHHhhcccCccceecccccccccccccccC
Q 043930 228 LQEIILMENQLSGCLPSEIGSGEYKNL-------TVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK 298 (629)
Q Consensus 228 L~~L~Ls~n~l~~~~p~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 298 (629)
|++|+|++|+|+ .++. +. . +| ++|+|++|+|+ .++..+..+.+|++|+|++|.|++.++..|.+
T Consensus 182 L~~L~Ls~N~L~-~lp~-~~--~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 182 LEALDVSTNLLE-SLPA-VP--V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCEEECCSSCCS-SCCC-CC------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCEEECcCCCCC-chhh-HH--H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 666666666666 4444 33 1 44 66666666665 35555555666666666666666555544443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.3e-20 Score=207.36 Aligned_cols=188 Identities=22% Similarity=0.327 Sum_probs=155.4
Q ss_pred cCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEec
Q 043930 108 LDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLN 187 (629)
Q Consensus 108 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~ 187 (629)
.+|++|+|++|+|++ ++..+ +.+|++|+|++|+|+. ++ ..+.+|++|+|++|+|++ ++. +. .+|++|+|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECC
Confidence 389999999999987 55544 4789999999999995 55 567999999999999994 877 43 499999999
Q ss_pred CccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc
Q 043930 188 HNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS 267 (629)
Q Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~ 267 (629)
+|.|++ ++. ...+|++|+|++|.|++ ++. .+.+|++|+|++|.|++ ++. +. .+|++|+|++|+|+ .
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~----~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP----ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC----TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh----CCCCEEECcCCCCC-c
Confidence 999996 555 45689999999999986 554 57899999999999985 666 43 78999999999998 5
Q ss_pred chHHhhcccCc-------cceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 268 VPQSFANLNNI-------MRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 268 ~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
++. |.. +| ++|+|++|.|+. ++..+.++.+|++|+|++|.|++..+..|..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 555 544 67 999999999996 67777789999999999999999887776654
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=2.2e-21 Score=216.84 Aligned_cols=255 Identities=16% Similarity=0.125 Sum_probs=179.7
Q ss_pred CcccEEEEEcCCCCccc----cCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcC-------------
Q 043930 82 QERFVAMIDLNKAEIAA----HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRL------------- 144 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------- 144 (629)
...+|+.|+|++|++.+ .+...+.++.+|++|+|++|.+.+ +...+.++.+|++|+++++..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 35679999999999873 344556778999999999999886 567788888888888874321
Q ss_pred -------------CCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhh-hh-hhhHHH
Q 043930 145 -------------VGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETI-GE-SLARYI 207 (629)
Q Consensus 145 -------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~-~~-~~L~~L 207 (629)
.+.++..+..+.+|++|+|++|.+++.....++. .+|++|+|+ +.+.+.....+ .. .+|++|
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence 1224445566778888888888765433222222 778888887 44433222222 22 468888
Q ss_pred HhcC-----------Cccccc-CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEec----CCccccc----
Q 043930 208 VLSS-----------NNFTGC-LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR----SNKFHGS---- 267 (629)
Q Consensus 208 ~l~~-----------n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls----~n~l~~~---- 267 (629)
+|++ |.+++. +...+.++.+|++|+|+.|++++.....+.. .+.+|++|+|+ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHHH
Confidence 8883 455543 2223455789999999888888766666652 48899999996 6778763
Q ss_pred -chHHhhcccCccceeccccc--cccccccccc-CCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccc
Q 043930 268 -VPQSFANLNNIMRLDISDNM--LTGFVSADIC-KLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 268 -~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
+...+.++.+|++|+|++|. +++.....+. .+.+|++|+|++|.+++.. ...+.++++|++|+|++|.|++.
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 44557789999999998643 6655444443 4889999999999998744 44567899999999999998754
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.8e-19 Score=170.92 Aligned_cols=177 Identities=17% Similarity=0.156 Sum_probs=124.0
Q ss_pred CEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecC
Q 043930 111 IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNH 188 (629)
Q Consensus 111 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~ 188 (629)
+.++++++.+.. ++.. ...+|++|+|++|+|++.....+..+.+|++|+|++|+|+ .++...+. .+|++|+|++
T Consensus 10 ~~v~c~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS-CCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC-CCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 345555555553 2222 2468999999999999877777889999999999999998 55554433 6777777777
Q ss_pred ccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930 189 NWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268 (629)
Q Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~ 268 (629)
|.|++. ....|.++.+|++|+|++|+|++.....+. .+.+|++|+|++|+|++..
T Consensus 86 n~l~~~-----------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 86 NQLQSL-----------------------PNGVFDKLTQLKELALNTNQLQSLPDGVFD--KLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp SCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCC
T ss_pred CcCCcc-----------------------CHhHhcCccCCCEEEcCCCcCcccCHhHhc--cCCcCCEEECCCCccceeC
Confidence 766521 223456677888888888888744444444 6777888888888877665
Q ss_pred hHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCC
Q 043930 269 PQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGS 323 (629)
Q Consensus 269 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l 323 (629)
...|.++.+|++|+|++|.+.+ .+.+|++|++++|++++.++..+..+
T Consensus 141 ~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 141 DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred HHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 5567777778888888776653 35577777777777777766655543
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.6e-19 Score=200.59 Aligned_cols=200 Identities=14% Similarity=0.206 Sum_probs=142.9
Q ss_pred CcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEe
Q 043930 107 LLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFL 186 (629)
Q Consensus 107 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L 186 (629)
+..+..++|..+.+.+.+ .+..|.+|++|+|++|.|... ..+..+.+|++|+|++|+|+ .+.......+|++|+|
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~L 94 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCC-CCGGGGGCTTCCEEEC
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCC-CChhhccCCCCCEEEC
Confidence 345666777777777543 357889999999999999874 35889999999999999998 4554223389999999
Q ss_pred cCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930 187 NHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266 (629)
Q Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~ 266 (629)
++|.|.+ +.......+|++|+|++|.|.+. ..|..|.+|+.|+|++|.|.+. ..+. .+.+|++|+|++|.|++
T Consensus 95 s~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 95 DENKIKD-LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CSSCCCC-CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG--SCTTCSEEECCSSCCCC
T ss_pred cCCCCCC-ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhc--ccCCCCEEECcCCcCCC
Confidence 9999984 33222235677777777777753 4567777777777777777743 3444 67777777777777775
Q ss_pred cchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcC
Q 043930 267 SVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISG 322 (629)
Q Consensus 267 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 322 (629)
..+ |..+.+|++|+|++|.|.++ ..|..|.+|+.|+|++|.|.+.....+..
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~ 219 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSN 219 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSS
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccccccc
Confidence 544 67777777777777777764 35777777777777777776654433333
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.1e-19 Score=206.99 Aligned_cols=253 Identities=15% Similarity=0.150 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCC--CCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCE-----EE
Q 043930 42 VGLQAFKKAIYSDPYNHTENWVGT--DVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIY-----FH 114 (629)
Q Consensus 42 ~~l~~~~~~~~~~~~~~l~~~~~~--~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~-----L~ 114 (629)
.++.++...+....+.....|... ..+.|.+..+. ..+++.|+|.+|++... ...+....+|.. ++
T Consensus 135 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~ 207 (727)
T 4b8c_D 135 QALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS------TPLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDD 207 (727)
T ss_dssp HHHHHHHHHHHHHHTTC---------------------------------------------------------------
T ss_pred hhhhhhhhhcccccCcccCCCcCCCCccccCCCceec------CCccceEEeeCCCCCcc-hhhHhhcCccCcccccCcc
Confidence 445555555544444444555432 33455555443 35688899988888663 222222222222 22
Q ss_pred CCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecCccccc
Q 043930 115 ANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNHNWFRG 193 (629)
Q Consensus 115 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~ 193 (629)
+..|++. ...+.|..+.+|++|+|++|.|.. ++..+..+.+|++|+|++|+|+ .++..+.. .+|++|+|++|.|+
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3333333 345667778888888888888774 5556667788888888888887 77766655 67777777777666
Q ss_pred cCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh
Q 043930 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273 (629)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 273 (629)
.++..|++|.+|++|+|++|.|+ .++..|+ .|.+|++|+|++|.|++.++..|.
T Consensus 284 -----------------------~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~--~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 284 -----------------------SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG--NLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp -----------------------SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT--SCTTCCCEECTTSCCCSHHHHHHH
T ss_pred -----------------------ccChhhcCCCCCCEEECCCCCCC-ccChhhh--cCCCccEEeCCCCccCCCChHHHh
Confidence 34455666777777777777776 6666665 677777777777777776666665
Q ss_pred cccC-ccceecccccccccccccccCCCCCcEEEecCC--------ccCCcchhhhcCCCCCceecccCCccc
Q 043930 274 NLNN-IMRLDISDNMLTGFVSADICKLPHLLNFTFSNN--------FFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 274 ~l~~-L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N--------~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
.+.. +..|+|++|.+++.++. .|+.|+|++| .|.+.....+..+..+....+++|.+.
T Consensus 338 ~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 338 EKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred hcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5422 23466777777665544 3344455544 222222333334444455555555553
No 103
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=9.1e-20 Score=190.01 Aligned_cols=218 Identities=11% Similarity=0.047 Sum_probs=166.7
Q ss_pred CEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCC-EEEec
Q 043930 111 IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLD-IIFLN 187 (629)
Q Consensus 111 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~-~L~L~ 187 (629)
++++.++++++ .++..+ ..+|++|+|++|+|+..-...|.++.+|++|+|++|++.+.++...|. .+|+ .++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666777777 345444 368999999999999755567899999999999999998678877765 5655 46777
Q ss_pred CccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccC-CcccccCCcccccCCCCCCcEEEecCCccc
Q 043930 188 HNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILME-NQLSGCLPSEIGSGEYKNLTVFDIRSNKFH 265 (629)
Q Consensus 188 ~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~ 265 (629)
+|++++..+..+.. .+|++|++++|++.+.....+..+.++..|++.+ +++. .++...+.+....|++|+|++|+|+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence 89998766666655 5899999999999977666677777889999976 5566 4444332223357999999999999
Q ss_pred ccchHHhhcccCccceeccc-ccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccC
Q 043930 266 GSVPQSFANLNNIMRLDISD-NMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKG 333 (629)
Q Consensus 266 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~ 333 (629)
. +...+....+|++|+|++ |.++.+..+.|.++.+|++|||++|+|+.+....+.++.+|+.+++..
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC
Confidence 4 444444567899999985 677765556789999999999999999998777777777777666543
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=7.1e-20 Score=182.75 Aligned_cols=171 Identities=17% Similarity=0.237 Sum_probs=124.0
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEE
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYL 161 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 161 (629)
.+..++.++|+++.+.+.. .+..+.+|++|+|++|+|... . .|..+.+|++|+|++|+|++... +..+.+|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3445666777788776643 577888899999999888753 3 68888899999999998887443 8888889999
Q ss_pred EccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccccc
Q 043930 162 DLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGC 241 (629)
Q Consensus 162 ~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 241 (629)
+|++|+|+ .++...+ .+|++|+|++|.|++. ..|.++.+|++|+|++|+|++.
T Consensus 91 ~L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~~-------------------------~~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 91 SVNRNRLK-NLNGIPS-ACLSRLFLDNNELRDT-------------------------DSLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp ECCSSCCS-CCTTCCC-SSCCEEECCSSCCSBS-------------------------GGGTTCTTCCEEECTTSCCCBC
T ss_pred ECCCCccC-CcCcccc-CcccEEEccCCccCCC-------------------------hhhcCcccccEEECCCCcCCCC
Confidence 99999887 4554434 7777887777776631 2356677777777777777743
Q ss_pred CCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccc
Q 043930 242 LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGF 291 (629)
Q Consensus 242 ~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 291 (629)
. .+. .+.+|++|+|++|+|++. ..+..+.+|++|+|++|.+.+.
T Consensus 144 -~-~l~--~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 -V-MLG--FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGG--GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -h-HHc--cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 344 677777777777777754 5667777777777777777654
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=4.4e-22 Score=219.93 Aligned_cols=187 Identities=19% Similarity=0.188 Sum_probs=108.3
Q ss_pred cCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCc-------------CccCCCchhcc-CCCCEEE-ecCccccc
Q 043930 129 ANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNN-------------FEGELPPELFQ-TGLDIIF-LNHNWFRG 193 (629)
Q Consensus 129 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~ip~~~~~-~~L~~L~-L~~n~l~~ 193 (629)
..+.+|+.|+|++|+|+. ++..++++.+|++|++++|. +.+.++..+.. .+|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 345566666666666653 56666666666666665443 12122222221 3344433 333222
Q ss_pred cCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhh
Q 043930 194 SIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA 273 (629)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 273 (629)
..|+.+++.+|.+..... ..|++|+|++|+|++ ++. ++ .+.+|++|+|++|+|+ .++..|+
T Consensus 423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~--~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LE--QLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GG--GGTTCCEEECCSSCCC-CCCGGGG
T ss_pred --------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-cc--ccccCcEeecCccccc-ccchhhh
Confidence 134444444444442211 246677777777763 454 44 5677777777777776 5666677
Q ss_pred cccCccceecccccccccccccccCCCCCcEEEecCCccCCcc-hhhhcCCCCCceecccCCccccc
Q 043930 274 NLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMA-MECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 274 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
++.+|++|+|++|.|++ ++ .|.++.+|++|+|++|+|+++. +..|.++.+|+.|+|++|.|++.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 77777777777777776 34 5667777777777777777665 66677777777777777776654
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=2.2e-19 Score=187.91 Aligned_cols=175 Identities=19% Similarity=0.194 Sum_probs=106.6
Q ss_pred cEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc-c-CCCCEEEecCccccccCchhhhhhhhHHHHhcCC
Q 043930 135 EEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF-Q-TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSN 212 (629)
Q Consensus 135 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~-~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n 212 (629)
+.+++++|+|+. ++..+ ...|++|+|++|+|++.....+. . .+|++|+|++|.|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~------------------- 78 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------------------- 78 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-------------------
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-------------------
Confidence 567777777765 44333 23467777777777632222222 2 666666666666653
Q ss_pred cccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccc
Q 043930 213 NFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV 292 (629)
Q Consensus 213 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 292 (629)
.....|.++.+|++|+|++|+|++.....|. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++.
T Consensus 79 ----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 79 ----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp ----ECTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred ----cChhhccCCCCCCEEECCCCcCCcCCHHHhC--CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 3334566666777777777776644444444 5667777777777776555666666777777777777776544
Q ss_pred cccc---cCCCCCcEEEecCCccCCcchhhhcCCCC--CceecccCCccc
Q 043930 293 SADI---CKLPHLLNFTFSNNFFQGMAMECISGSRD--DVYFEEKGNCLA 337 (629)
Q Consensus 293 ~~~l---~~l~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~l~~N~l~ 337 (629)
...| ..+.+|+.|+|++|+|+++....+..+.. |+.|+|.+|.|.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 4334 45667777777777777666666666655 366777777665
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=167.94 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=52.3
Q ss_pred ccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCC
Q 043930 220 RSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKL 299 (629)
Q Consensus 220 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 299 (629)
..|.++.+|++|+|++|+|++.....+. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++.+..|..+
T Consensus 75 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 152 (220)
T 2v70_A 75 GAFEGASGVNEILLTSNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCGGGGT--TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC
T ss_pred HHhCCCCCCCEEECCCCccCccCHhHhc--CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC
Confidence 3455555666666666665544333343 45556666666666655555555555566666666666655555555555
Q ss_pred CCCcEEEecCCccCC
Q 043930 300 PHLLNFTFSNNFFQG 314 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~ 314 (629)
.+|++|+|++|.|..
T Consensus 153 ~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 153 HSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCCEEECCSCCEEC
T ss_pred CCCCEEEecCcCCcC
Confidence 566666666655543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4.6e-19 Score=171.95 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=79.2
Q ss_pred CcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCC
Q 043930 158 NLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMEN 236 (629)
Q Consensus 158 L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 236 (629)
-+.+++++++++ .++..+. .+|++|+|++|.|++.....+.. .+|++|+|++|+|.+..+..|.++.+|++|+|++|
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 367889999887 7776654 67888888888877443333322 24444455555444444444444445555555555
Q ss_pred cccccCCcc-cccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCcc
Q 043930 237 QLSGCLPSE-IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFF 312 (629)
Q Consensus 237 ~l~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l 312 (629)
+|+ .++.. +. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|..+.+|++|+|++|.+
T Consensus 91 ~l~-~l~~~~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KIT-ELPKSLFE--GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCC-CCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCC-ccCHhHcc--CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 444 22222 22 344455555555544444444444444445555555544444433444444444444444444
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=4.8e-18 Score=165.84 Aligned_cols=162 Identities=22% Similarity=0.276 Sum_probs=109.3
Q ss_pred CCCCCCCCCCCcCceecCCCCCCCcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEE
Q 043930 59 TENWVGTDVCQYNGVLCDVFIDNQERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFD 138 (629)
Q Consensus 59 l~~~~~~~~c~~~g~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 138 (629)
...|.+...|.|.++.|. ++++.. ++..+ ..+|++|+|++|+|.+..+..|.++.+|++|+
T Consensus 10 ~~~~~~~~~Cs~~~v~c~----------------~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCR----------------SKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELY 70 (229)
T ss_dssp -CCCCTTCEEETTEEECT----------------TSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred hccCCCCCEEeCCEeEcc----------------CCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence 345567788888877775 333422 33322 37889999999999888788888999999999
Q ss_pred ccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccc
Q 043930 139 VSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTG 216 (629)
Q Consensus 139 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 216 (629)
|++|+|.......|..+.+|++|+|++|+|+ .++..++. .+|++|+|++|.|+
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~------------------------ 125 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT------------------------ 125 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC------------------------
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc------------------------
Confidence 9999998766666788899999999999887 44443332 56666666666554
Q ss_pred cCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccc
Q 043930 217 CLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHG 266 (629)
Q Consensus 217 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~ 266 (629)
.++..+.++.+|++|+|++|+|++.....+. .+.+|++|+|++|.+..
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIPHGAFD--RLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECTTSCBCT
T ss_pred ccCcccccCCCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCCccC
Confidence 2233445566667777777766633333343 56666677777666653
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=3.5e-20 Score=207.11 Aligned_cols=254 Identities=10% Similarity=-0.000 Sum_probs=149.8
Q ss_pred cccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCC--------------------------CC----ccChhhhcCCC
Q 043930 83 ERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNR--------------------------LC----GIIPETFANMH 132 (629)
Q Consensus 83 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--------------------------l~----~~~~~~~~~l~ 132 (629)
..+|+.|+|++|...+.+...+.++.+|++|+++++. +. +.+...+..+.
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~ 289 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS 289 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence 3567777777762222245555566666666654331 11 11233334567
Q ss_pred CCcEEEccCCcCCCCc-hhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecC---------ccccccCchhhh
Q 043930 133 RLEEFDVSNNRLVGPF-PTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNH---------NWFRGSIPETIG 200 (629)
Q Consensus 133 ~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~---------n~l~~~~~~~~~ 200 (629)
+|++|+|++|.+.+.. ...+..+.+|++|+|++| +++.....+.. .+|++|+|.+ +.+++.....+.
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 7888888887765432 223456778888888777 43222222222 6788887733 344433222222
Q ss_pred --hhhhHHHHhcCCcccccCCcccc-CCCCCcEEEcc--C----Cccccc-----CCcccccCCCCCCcEEEecCCcccc
Q 043930 201 --ESLARYIVLSSNNFTGCLPRSIG-YMKELQEIILM--E----NQLSGC-----LPSEIGSGEYKNLTVFDIRSNKFHG 266 (629)
Q Consensus 201 --~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls--~----n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~l~~ 266 (629)
..+|++|++.+|++++.....+. .+++|++|+|+ + |++++. +...+. .+.+|++|+|++ .+++
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~--~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE--HCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH--HCTTCCEEECCS-SCCH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHh--hCCCccEEeecC-cccH
Confidence 24577777777777655444443 46788888887 3 444411 111122 567888888866 6665
Q ss_pred cchHHhhc-ccCccceecccccccccccccc-cCCCCCcEEEecCCccCCcchh-hhcCCCCCceecccCCcccccc
Q 043930 267 SVPQSFAN-LNNIMRLDISDNMLTGFVSADI-CKLPHLLNFTFSNNFFQGMAME-CISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 267 ~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
.....+.. +.+|++|+|++|.+++.....+ .++.+|++|+|++|.+++.... .+..+++|++|++++|.++...
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 55555555 7788888888888876544444 5578888888888888654433 3445778888888888775443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=8e-19 Score=175.13 Aligned_cols=172 Identities=18% Similarity=0.257 Sum_probs=140.6
Q ss_pred CCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEE
Q 043930 106 WLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDII 184 (629)
Q Consensus 106 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L 184 (629)
.+.+|..|++++|.+.+.. .+..+.+|++|+|++|+|+. +. .+..+.+|++|+|++|+|+ .+.. +.. .+|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEE
Confidence 4667888899999998653 57889999999999999986 33 6888999999999999998 4554 333 889999
Q ss_pred EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcc
Q 043930 185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKF 264 (629)
Q Consensus 185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l 264 (629)
+|++|.+++. .. +.. .+|++|+|++|+|++ +. .+. .+.+|++|+|++|+|
T Consensus 91 ~L~~N~l~~l------------------------~~-~~~-~~L~~L~L~~N~l~~-~~-~l~--~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 91 SVNRNRLKNL------------------------NG-IPS-ACLSRLFLDNNELRD-TD-SLI--HLKNLEILSIRNNKL 140 (263)
T ss_dssp ECCSSCCSCC------------------------TT-CCC-SSCCEEECCSSCCSB-SG-GGT--TCTTCCEEECTTSCC
T ss_pred ECCCCccCCc------------------------Cc-ccc-CcccEEEccCCccCC-Ch-hhc--CcccccEEECCCCcC
Confidence 9998887732 11 122 789999999999985 33 455 799999999999999
Q ss_pred cccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930 265 HGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM 317 (629)
Q Consensus 265 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 317 (629)
++. ..+..+.+|++|+|++|.|.+. ..+.++.+|++|+|++|.+.+...
T Consensus 141 ~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 141 KSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 964 3688999999999999999986 678899999999999999887643
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2e-18 Score=180.64 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=128.3
Q ss_pred EEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhc-CCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccC
Q 043930 87 AMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFA-NMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF 165 (629)
Q Consensus 87 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 165 (629)
+.+++++++|.. ++..+. ..|++|+|++|+|++.....|. ++.+|++|+|++|+|++.....|..+.+|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 368888888865 555443 4689999999999987777787 899999999999999987777888999999999999
Q ss_pred CcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 166 NNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 166 n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
|+|+ .+....|. .+|++|+|++|.|++ .....|.++.+|++|+|++|+|+ .++
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~-~l~ 152 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVV-----------------------VDRNAFEDMAQLQKLYLSQNQIS-RFP 152 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccE-----------------------ECHHHhCCcccCCEEECCCCcCC-eeC
Confidence 9987 44443332 667777776666552 23455677788888888888887 344
Q ss_pred ccccc--CCCCCCcEEEecCCcccccchHHhhcccC--ccceeccccccc
Q 043930 244 SEIGS--GEYKNLTVFDIRSNKFHGSVPQSFANLNN--IMRLDISDNMLT 289 (629)
Q Consensus 244 ~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~Ls~N~l~ 289 (629)
..+.. ..+.+|++|+|++|+|++.....|..+.+ |+.|+|++|.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 43321 15778888888888888666666777766 377788777775
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=4.3e-18 Score=162.11 Aligned_cols=111 Identities=15% Similarity=0.198 Sum_probs=71.9
Q ss_pred ccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccc-ccccccccccCCC
Q 043930 222 IGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICKLP 300 (629)
Q Consensus 222 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~ 300 (629)
|.++++|++|+|++|++++.....+. .+.+|++|+|++|+|++.....|..+.+|++|+|++|. ++++ . .+.++.
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~ 159 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLS--GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLP 159 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCT--TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCS
T ss_pred hhcCCCCCEEEeECCccCcccChhhc--CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCC
Confidence 44566677777777777655555555 56777777777777766566667777777777777776 5443 3 466677
Q ss_pred CCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 301 HLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 301 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
+|++|+|++|.|+++. .+..+++|++|++++|.|.+
T Consensus 160 ~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 7777777777776643 56667777777777777653
No 114
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1.4e-20 Score=210.38 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=80.5
Q ss_pred CCCCcEEEccCCcccccCCcccccCCCCCCcEEEec--C----Ccccc-----cchHHhhcccCccceeccccccccccc
Q 043930 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR--S----NKFHG-----SVPQSFANLNNIMRLDISDNMLTGFVS 293 (629)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls--~----n~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 293 (629)
+.+|++|++..|++++.....+.. .+.+|++|+|+ + |++++ .+...+.++.+|++|+|++ .+++...
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 567777777777776544434431 46788888888 3 45552 1223356778888888877 6665555
Q ss_pred ccccC-CCCCcEEEecCCccCCcchhhh-cCCCCCceecccCCccccccc
Q 043930 294 ADICK-LPHLLNFTFSNNFFQGMAMECI-SGSRDDVYFEEKGNCLAEMEY 341 (629)
Q Consensus 294 ~~l~~-l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~ 341 (629)
..+.. +.+|++|+|++|.+++.....+ .++++|++|+|++|.+++...
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 55554 8899999999999987666555 678999999999999975543
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.3e-18 Score=167.00 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=91.0
Q ss_pred CCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccC
Q 043930 157 RNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILME 235 (629)
Q Consensus 157 ~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 235 (629)
..+.+++++++++ .++..+. .+|++|+|++|.|++..+..+.. .+|++|+|++|+|.+.....|.++.+|++|+|++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4667899998887 7776554 78888888888888655544433 3555556666655544444455555566666666
Q ss_pred CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930 236 NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 236 n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
|+|++.....+. .+.+|++|+|++|+|+ .++..+.++.+|++|+|++|+|+++....|.++.+|++|+|++|.+..
T Consensus 98 N~l~~l~~~~~~--~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFD--RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTT--TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhC--cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 655533333333 4555666666666555 444555555555666666655555444445555555556665555543
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.4e-18 Score=165.82 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=87.1
Q ss_pred CEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecC
Q 043930 182 DIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRS 261 (629)
Q Consensus 182 ~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~ 261 (629)
+.++++++.++ .++..+. ..|++|+|++|+|.+.....|.++.+|++|+|++|+|++..+..|. .+.+|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ--GLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT--TCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh--CCcCCCEEECCC
Confidence 34555555555 3333332 3455566666666555445556666666666666666544455554 556666666666
Q ss_pred CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930 262 NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 262 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
|+|++.....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|.|+++..+.|..+.+|++|+|++|.|.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6665444444555666666666666666555555556666666666666666655555555666666666666554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=7.3e-18 Score=160.46 Aligned_cols=154 Identities=10% Similarity=0.150 Sum_probs=96.9
Q ss_pred hCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEE
Q 043930 105 GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDII 184 (629)
Q Consensus 105 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L 184 (629)
+.+.+|++|+|++|+|.. ++ .+..+.+|++|+|++|.++.. ..+..+.+|++|+|++|++++.
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~------------- 103 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSD------------- 103 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGG-------------
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcc-------------
Confidence 455667777777777763 33 466677777777777755532 3455666666666666655421
Q ss_pred EecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCc-
Q 043930 185 FLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNK- 263 (629)
Q Consensus 185 ~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~- 263 (629)
....|+++.+|++|+|++|+|++..+..+. .+.+|++|+|++|.
T Consensus 104 ---------------------------------~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~--~l~~L~~L~L~~n~~ 148 (197)
T 4ezg_A 104 ---------------------------------KIPNLSGLTSLTLLDISHSAHDDSILTKIN--TLPKVNSIDLSYNGA 148 (197)
T ss_dssp ---------------------------------GSCCCTTCTTCCEEECCSSBCBGGGHHHHT--TCSSCCEEECCSCTB
T ss_pred ---------------------------------cChhhcCCCCCCEEEecCCccCcHhHHHHh--hCCCCCEEEccCCCC
Confidence 223355666777777777777655555555 67777777777776
Q ss_pred ccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930 264 FHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 264 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
++ .+. .+.++.+|++|+|++|.|++.. .+.++.+|++|+|++|+|.+
T Consensus 149 i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 149 IT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 54 333 5677777777777777777632 56677777788887777654
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=162.43 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=82.5
Q ss_pred CEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCch-hhhhCCCCCcEEEccCCcCccCCCchhcc-CCCCEEEecC
Q 043930 111 IYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFP-TVALTWKRNLYLDLRFNNFEGELPPELFQ-TGLDIIFLNH 188 (629)
Q Consensus 111 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~~L~~L~L~~ 188 (629)
++|++++|+++. ++..+ ...+++|+|++|+|++... ..|..+.+|++|+|++|+|++.....+.. .+|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 33322 2244566666666655322 23455566666666666655222222222 4455555555
Q ss_pred ccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccc
Q 043930 189 NWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSV 268 (629)
Q Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~ 268 (629)
|.|++ .....|.++.+|++|+|++|+|++..+..+. .+.+|++|+|++|+|++..
T Consensus 91 N~l~~-----------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~ 145 (220)
T 2v70_A 91 NRLEN-----------------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFI--GLSSVRLLSLYDNQITTVA 145 (220)
T ss_dssp SCCCC-----------------------CCGGGGTTCSSCCEEECTTSCCCCBCTTSST--TCTTCSEEECTTSCCCCBC
T ss_pred CccCc-----------------------cCHhHhcCCcCCCEEECCCCcCCeECHhHcC--CCccCCEEECCCCcCCEEC
Confidence 44442 2223455566666666666666655555555 5666666666666666555
Q ss_pred hHHhhcccCccceecccccccc
Q 043930 269 PQSFANLNNIMRLDISDNMLTG 290 (629)
Q Consensus 269 ~~~~~~l~~L~~L~Ls~N~l~~ 290 (629)
+..|..+.+|++|+|++|.+..
T Consensus 146 ~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 146 PGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTTTTCTTCCEEECCSCCEEC
T ss_pred HHHhcCCCCCCEEEecCcCCcC
Confidence 6666666666666666666654
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.3e-18 Score=179.75 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCcc-ceecccccccccccccccCCCCCc
Q 043930 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIM-RLDISDNMLTGFVSADICKLPHLL 303 (629)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~l~~l~~L~ 303 (629)
+.+|++|+|.+|+++ .++...+. +|.+|++|+|.+| ++.+....|.++.+|+ .|+|.+ .++.+....|.+|.+|+
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~-~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFA-QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTT-TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhh-CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 678888888888887 44443332 6788888888887 6656667788888888 888877 66666667788888888
Q ss_pred EEEecCCccCCcchhhhcCCCCCceecc
Q 043930 304 NFTFSNNFFQGMAMECISGSRDDVYFEE 331 (629)
Q Consensus 304 ~L~L~~N~l~~~~~~~l~~l~~L~~L~l 331 (629)
+|+|.+|.+..+...+|.++.+|+.|+.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8888888888888888888888887764
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=9e-19 Score=199.36 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
..|+.|+|++|.|. .++..+.++.+|++|+|++|+|+ .++..|++|.+|++|+|++|+|+ .++..|..+.+|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 34455555555544 23344444555555555555554 34444555555555555555554 24444555555555555
Q ss_pred cCCcCccCCCchhcc-CCCCEEEecCccccccCchhh
Q 043930 164 RFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETI 199 (629)
Q Consensus 164 s~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~ 199 (629)
++|.|+ .++..+.. .+|++|+|++|.|++.++..+
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555554 44444333 445555555555554444433
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.6e-19 Score=199.52 Aligned_cols=204 Identities=16% Similarity=0.148 Sum_probs=169.7
Q ss_pred hCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc-------------CCCCchhhhhCCCCCcEEE-ccCCcCcc
Q 043930 105 GWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR-------------LVGPFPTVALTWKRNLYLD-LRFNNFEG 170 (629)
Q Consensus 105 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~ 170 (629)
..+.+|+.|+|++|+|. .++..+++|.+|++|++++|. +.+.++..+..+.+|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56789999999999997 689999999999999998775 5566777888999999999 7777664
Q ss_pred CCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCC
Q 043930 171 ELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGE 250 (629)
Q Consensus 171 ~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 250 (629)
+|+.+++.+|.|++ +....|++|+|++|+|++ ++. |+++.+|++|+|++|+|+ .++..++ .
T Consensus 424 ---------~L~~l~l~~n~i~~-----l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~--~ 484 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLK-----MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA--A 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHH-----HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG--G
T ss_pred ---------hhhhhhhhcccccc-----cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh--c
Confidence 34555566666552 122347778888888885 555 899999999999999999 8888887 8
Q ss_pred CCCCcEEEecCCcccccchHHhhcccCccceecccccccccc-cccccCCCCCcEEEecCCccCCcch---hhhcCCCCC
Q 043930 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFV-SADICKLPHLLNFTFSNNFFQGMAM---ECISGSRDD 326 (629)
Q Consensus 251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L 326 (629)
+.+|++|+|++|+|++ ++ .|.++.+|++|+|++|.|++.. +..|.++.+|++|+|++|.|++... ..+..+++|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 9999999999999996 66 8999999999999999999876 8899999999999999999988743 344557888
Q ss_pred ceecc
Q 043930 327 VYFEE 331 (629)
Q Consensus 327 ~~L~l 331 (629)
+.|++
T Consensus 563 ~~L~l 567 (567)
T 1dce_A 563 SSILT 567 (567)
T ss_dssp SEEEC
T ss_pred CccCC
Confidence 88864
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=1.9e-16 Score=149.93 Aligned_cols=131 Identities=19% Similarity=0.287 Sum_probs=88.5
Q ss_pred cEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930 159 LYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL 238 (629)
Q Consensus 159 ~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 238 (629)
++|++++|+|+ .++..++. +|++|+|++|.|++.... ..|+++.+|++|+|++|+|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~-~l~~L~l~~n~i~~~~~~----------------------~~~~~l~~L~~L~Ls~N~l 66 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL-HTTELLLNDNELGRISSD----------------------GLFGRLPHLVKLELKRNQL 66 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT-TCSEEECCSCCCCSBCCS----------------------CSGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCccCCCC-CCCEEECCCCcCCccCCc----------------------cccccCCCCCEEECCCCCC
Confidence 56667777665 56654443 666666666666532211 1356667777777777777
Q ss_pred cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCc
Q 043930 239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315 (629)
Q Consensus 239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 315 (629)
++..+..+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|+|++..+..|..+.+|++|+|++|.|.+.
T Consensus 67 ~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 67 TGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCHhHcC--CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 766566665 677777777777777766666677777777777777777776677777777777777777777654
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=8.4e-17 Score=148.86 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=108.7
Q ss_pred HHHHhcCCccc-ccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceec
Q 043930 205 RYIVLSSNNFT-GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDI 283 (629)
Q Consensus 205 ~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 283 (629)
++|++++|++. +.++..|..+.+|++|+|++|.|++. ..+. .+.+|++|+|++|+|++.++..+.++.+|++|+|
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCC--CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhc--cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 33444444443 34556677889999999999999854 5565 7899999999999999878888888999999999
Q ss_pred cccccccccc-ccccCCCCCcEEEecCCccCCcch---hhhcCCCCCceecccCCcccccc
Q 043930 284 SDNMLTGFVS-ADICKLPHLLNFTFSNNFFQGMAM---ECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 284 s~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
++|.|+++.. ..+.++.+|++|+|++|.|++... ..+..+++|++|++++|.+.++.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 9999987532 678899999999999999998766 68889999999999999987654
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=2.4e-16 Score=142.68 Aligned_cols=127 Identities=15% Similarity=0.206 Sum_probs=106.0
Q ss_pred hhHHHHhcCCccc-ccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930 203 LARYIVLSSNNFT-GCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281 (629)
Q Consensus 203 ~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 281 (629)
+|++|++++|.+. +.++..|..+.+|++|+|++|.|++. ..+. .+.+|++|+|++|+|++.++..+.++.+|++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3455555555555 45666778899999999999999854 5555 78999999999999998788888889999999
Q ss_pred eccccccccc-ccccccCCCCCcEEEecCCccCCcch---hhhcCCCCCceecccC
Q 043930 282 DISDNMLTGF-VSADICKLPHLLNFTFSNNFFQGMAM---ECISGSRDDVYFEEKG 333 (629)
Q Consensus 282 ~Ls~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~ 333 (629)
+|++|.|++. ....+.++.+|++|+|++|.+++... ..+..+.+|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999974 33678999999999999999998866 6788999999999863
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=3.4e-16 Score=148.27 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=110.5
Q ss_pred HHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcc-cccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSE-IGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284 (629)
Q Consensus 206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 284 (629)
+|++++|+++ .++..+. .+|++|+|++|+|++..... +. .+.+|++|+|++|+|++..+..|.++.+|++|+|+
T Consensus 12 ~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 4455555554 4555443 38999999999998555443 55 79999999999999998888999999999999999
Q ss_pred cccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
+|+|+++....|.++.+|++|+|++|+|+++....|..+.+|++|+|++|.|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9999998888899999999999999999999999999999999999999998743
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=6.4e-16 Score=142.89 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=34.7
Q ss_pred CCCCCcEEEccCCcccccC-CcccccCCCCCCcEEEecCCcccccch---HHhhcccCccceeccccccc
Q 043930 224 YMKELQEIILMENQLSGCL-PSEIGSGEYKNLTVFDIRSNKFHGSVP---QSFANLNNIMRLDISDNMLT 289 (629)
Q Consensus 224 ~l~~L~~L~Ls~n~l~~~~-p~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~N~l~ 289 (629)
++.+|++|+|++|.|++.. ...+. .+.+|++|+|++|.|++... ..|..+++|++|++++|.+.
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLK--KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGS--SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred hCCCCCEEeccCCccCcchhHHHHh--cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 4556666666666665321 13333 45666666666666654333 34555556666666655554
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=9.6e-16 Score=145.18 Aligned_cols=109 Identities=23% Similarity=0.298 Sum_probs=72.3
Q ss_pred CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEE
Q 043930 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNF 305 (629)
Q Consensus 226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L 305 (629)
.+|++|+|++|+|+ .++..+. .+.+|++|+|++|+|++.....|.++.+|++|+|++|.|+++....|.++.+|++|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGG--GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCc-hhHHHhh--cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence 46666777776666 5555554 56667777777776665555566666677777777777666655566666677777
Q ss_pred EecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930 306 TFSNNFFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 306 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
+|++|.|+++....|..+.+|++|+|++|.+.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777766666666666667777777776664
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3e-15 Score=141.73 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=92.2
Q ss_pred cEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcc
Q 043930 159 LYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQL 238 (629)
Q Consensus 159 ~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 238 (629)
+++++++|+++ .++..++ .+|++|+|++|.|+ .++..|.++.+|++|+|++|+|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~------------------------~ip~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT------------------------LVPKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC------------------------SCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc------------------------hhHHHhhcccCCCEEECCCCcC
Confidence 46677777666 5655433 46666666666655 2334566777888888888888
Q ss_pred cccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930 239 SGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 239 ~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
++.....|. .+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|+++....|..+.+|++|+|++|.+..
T Consensus 67 ~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 67 STLSNQSFS--NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCCTTTTT--TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHhHcc--CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 755555565 67888888888888887767778888888888888888887666667788888888888887754
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=3e-16 Score=161.86 Aligned_cols=208 Identities=11% Similarity=0.082 Sum_probs=128.2
Q ss_pred CCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccc-----cC-chhhh-hhh
Q 043930 131 MHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRG-----SI-PETIG-ESL 203 (629)
Q Consensus 131 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~-----~~-~~~~~-~~~ 203 (629)
+.+|++|+|.+ .++.+...+|.+|.+|++|+|.+|.+. .+....|...++.+.+..+.... .+ ...+. ...
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77777777776 666555566777777777777777766 55556555433333333222100 00 00000 000
Q ss_pred hH-HHHhcCCc-ccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccce
Q 043930 204 AR-YIVLSSNN-FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRL 281 (629)
Q Consensus 204 L~-~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 281 (629)
|+ .+.+.... +...+........+++.+.+.++-.. .....+. ..+.+|++|+|++|+++.+....|.++.+|++|
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 00 00000000 00000000011244555555544222 1111121 137899999999999997777789999999999
Q ss_pred ecccccccccccccccCCCCCc-EEEecCCccCCcchhhhcCCCCCceecccCCccccccccCC
Q 043930 282 DISDNMLTGFVSADICKLPHLL-NFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEMEYQKL 344 (629)
Q Consensus 282 ~Ls~N~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 344 (629)
+|.+| +..+....|.+|.+|+ .|+|.+ .++.+...+|.+|.+|+.|++.+|.+..+....+
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 99998 8777778899999999 999998 8888888999999999999999999987765444
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=2.6e-15 Score=158.58 Aligned_cols=240 Identities=12% Similarity=0.096 Sum_probs=152.7
Q ss_pred EEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccC
Q 043930 86 VAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRF 165 (629)
Q Consensus 86 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 165 (629)
++.+.|.+ +++.+-..+|.++ +|+.++|.++ +..+-..+|.++ +|+.|+|.+ .++.....+|.+|.+|+.|+|.+
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 44444433 3444444556664 6888887665 555555667664 688888775 55554456677788888888887
Q ss_pred CcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCC
Q 043930 166 NNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLP 243 (629)
Q Consensus 166 n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 243 (629)
|+++ .+....|. .+|+.|+|.++ ++......|.. .+|+.|+|.++ +...-..+|.+ .+|+.|+|. +.++..-.
T Consensus 190 n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~ 264 (401)
T 4fdw_A 190 TKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS 264 (401)
T ss_dssp SCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT
T ss_pred Ccce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEECh
Confidence 7777 66666665 77888887744 44333344433 36777777654 44344455665 677777773 44542333
Q ss_pred cccccCCCCCCcEEEecCCccc-----ccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchh
Q 043930 244 SEIGSGEYKNLTVFDIRSNKFH-----GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAME 318 (629)
Q Consensus 244 ~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 318 (629)
..|. +|.+|+.|+|.+|.+. ......|.++.+|+.|+|.+ .+..+....|.+|.+|+.|+|.+| ++.+...
T Consensus 265 ~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 265 RAFY--YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp TTTT--TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred hHhh--CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 3444 6777888887777654 23445677777788888773 466666667777778888887443 6666667
Q ss_pred hhcCCCCCceecccCCcccccc
Q 043930 319 CISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 319 ~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
+|.++ +|+.|++.+|.+....
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCC
T ss_pred hCCCC-CCCEEEEcCCCCcccc
Confidence 77777 7888887777665443
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1.5e-14 Score=152.76 Aligned_cols=241 Identities=15% Similarity=0.100 Sum_probs=174.3
Q ss_pred cEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEcc
Q 043930 85 FVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLR 164 (629)
Q Consensus 85 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 164 (629)
+|+.++|..+ +..+...+|.++ +|+.|+|.+ .+..+-..+|.++.+|+.|+|.+|.++......|. +.+|+.|+|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 5777887665 656555667664 688888876 56655667888888999999988888765445555 6888888887
Q ss_pred CCcCccCCCchhcc--CCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCccc---
Q 043930 165 FNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLS--- 239 (629)
Q Consensus 165 ~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--- 239 (629)
++ ++ .|....|. .+|+.|+|.++ ++......|....|+.|+| .+++...-..+|.+|.+|+.|+|.+|.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 54 55 66666665 68888888765 4434444555567777877 44555555678888889999988887664
Q ss_pred --ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcch
Q 043930 240 --GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAM 317 (629)
Q Consensus 240 --~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 317 (629)
......|. +|.+|+.|+|.+ .++......|.++.+|+.|+|.+| ++.+....|.++ +|+.|+|.+|.+..+..
T Consensus 288 ~~~I~~~aF~--~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 288 EAMIHPYCLE--GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp TCEECTTTTT--TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred ccEECHHHhh--CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 12223333 788899999884 466566677888888999988655 666666778888 89999999888887777
Q ss_pred hhhcCC-CCCceecccCCcccc
Q 043930 318 ECISGS-RDDVYFEEKGNCLAE 338 (629)
Q Consensus 318 ~~l~~l-~~L~~L~l~~N~l~~ 338 (629)
..|.++ ..++.|++..+.+..
T Consensus 363 ~~F~~~~~~l~~l~vp~~~~~~ 384 (401)
T 4fdw_A 363 KVWYGFPDDITVIRVPAESVEK 384 (401)
T ss_dssp SSCCCSCTTCCEEEECGGGHHH
T ss_pred ccccCCCCCccEEEeCHHHHHH
Confidence 777777 477888888776653
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=5e-15 Score=138.11 Aligned_cols=130 Identities=20% Similarity=0.227 Sum_probs=65.4
Q ss_pred CCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEec
Q 043930 181 LDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIR 260 (629)
Q Consensus 181 L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls 260 (629)
.+.|++++|.++ .++..+. .+|++|++++|++.+.....|.++.+|++|+|++|+|++.....+. .+.+|++|+|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD--KLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc--CCCccCEEECC
Confidence 456666666665 2232221 3455555555555544444445555555555555555532222233 45555555555
Q ss_pred CCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCC
Q 043930 261 SNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 261 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
+|+|++.....|.++.+|++|+|++|.|+++....|.++.+|++|+|++|.+.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 555554444444555555555555555554433334445555555555555544
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.9e-15 Score=135.49 Aligned_cols=127 Identities=19% Similarity=0.262 Sum_probs=72.9
Q ss_pred CCCcEEEccCCcCC-CCchhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhc
Q 043930 132 HRLEEFDVSNNRLV-GPFPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLS 210 (629)
Q Consensus 132 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~ 210 (629)
.+|++|+|++|.+. +.++..+..+.+|++|+|++|++++ +
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-------------------------------------- 57 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-------------------------------------- 57 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C--------------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c--------------------------------------
Confidence 45666666666665 4455555556666666666665542 1
Q ss_pred CCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCccccc-chHHhhcccCccceeccccccc
Q 043930 211 SNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGS-VPQSFANLNNIMRLDISDNMLT 289 (629)
Q Consensus 211 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~ 289 (629)
..|+++.+|++|+|++|.|++.++..+. .+.+|++|+|++|+|++. ....+.++++|++|+|++|.|+
T Consensus 58 ---------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 58 ---------ANLPKLNKLKKLELSDNRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp ---------TTCCCCTTCCEEECCSSCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred ---------hhhhcCCCCCEEECCCCcccchHHHHhh--hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 2344555666666666666644444443 456666666666666542 2245666666666666666666
Q ss_pred cccc---ccccCCCCCcEEEec
Q 043930 290 GFVS---ADICKLPHLLNFTFS 308 (629)
Q Consensus 290 ~~~~---~~l~~l~~L~~L~L~ 308 (629)
+... ..+..+.+|++||++
T Consensus 127 ~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 127 NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GSTTHHHHHHHHCTTCCEETTB
T ss_pred chHHHHHHHHHHCCCcccccCC
Confidence 5433 345666666666654
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=5.9e-15 Score=137.61 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=86.0
Q ss_pred HHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930 205 RYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284 (629)
Q Consensus 205 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 284 (629)
+.+++++|++.. ++..+ ..+|++|+|++|+|++.....+. .+.+|++|+|++|+|++.....|.++.+|++|+|+
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 445666666653 33222 25777777777777744433444 56777777777777775555556777777777777
Q ss_pred cccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
+|.|++.....|.++.+|++|+|++|.|+++....+..+.+|++|+|++|.|.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 777776655556677777777777777777666666677777777777777654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.1e-16 Score=152.44 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=60.9
Q ss_pred CCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCCCCc
Q 043930 225 MKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLPHLL 303 (629)
Q Consensus 225 l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~ 303 (629)
+.+|++|+|++|.|+ .++..+. .+.+|++|+|++|+|++ ++ .+..+.+|++|+|++|.|++... ..+.++.+|+
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~--~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDA--VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHH--HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred CCCCCEEECCCCCcc-cccchhh--cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 344555555555554 3333333 34556666666666653 22 46666666667776666665322 3466666777
Q ss_pred EEEecCCccCCcch----------hhhcCCCCCceecccCCcccc
Q 043930 304 NFTFSNNFFQGMAM----------ECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 304 ~L~L~~N~l~~~~~----------~~l~~l~~L~~L~l~~N~l~~ 338 (629)
+|+|++|.+.+... ..+..+.+|++|| +|.++.
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 77777776654432 2366677777776 555554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=7.4e-15 Score=136.87 Aligned_cols=87 Identities=13% Similarity=0.065 Sum_probs=36.9
Q ss_pred CCCCcEEEecCCcccccchHHhhcccCccceeccccccccccc-ccccCCCCCcEEEecCCccCCcchh---hhcCCCCC
Q 043930 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVS-ADICKLPHLLNFTFSNNFFQGMAME---CISGSRDD 326 (629)
Q Consensus 251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~---~l~~l~~L 326 (629)
+.+|++|+|++|+|++.....|..+.+|++|+|++|.|++... ..+.++.+|++|+|++|.+..+... .+..+.+|
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQV 142 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCcc
Confidence 4444444444444443222223444444444444444432111 1344444445555555444433221 24445555
Q ss_pred ceecccCCccc
Q 043930 327 VYFEEKGNCLA 337 (629)
Q Consensus 327 ~~L~l~~N~l~ 337 (629)
++||+++|.+.
T Consensus 143 ~~Ld~~~n~~~ 153 (176)
T 1a9n_A 143 RVLDFQKVKLK 153 (176)
T ss_dssp SEETTEECCHH
T ss_pred ceeCCCcCCHH
Confidence 55555555443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=2.2e-16 Score=150.34 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=52.4
Q ss_pred hhCCcCCCEEECCCCCCCccChh------hhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhc
Q 043930 104 MGWLLDLIYFHANTNRLCGIIPE------TFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELF 177 (629)
Q Consensus 104 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~ 177 (629)
+.....++.++++++++.+.++. .|.++.+|++|+|++|.|++ ++ .+..+.+|++|+|++|+|+ .++..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34445555666666655554443 67777777777777777766 44 5666777777777777766 4554433
Q ss_pred c-CCCCEEEecCcccc
Q 043930 178 Q-TGLDIIFLNHNWFR 192 (629)
Q Consensus 178 ~-~~L~~L~L~~n~l~ 192 (629)
. .+|++|+|++|.|+
T Consensus 91 ~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 91 VADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHCSEEEEEEEECC
T ss_pred cCCcCCEEECcCCcCC
Confidence 3 55556665555554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.3e-14 Score=133.47 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=58.7
Q ss_pred cccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchH--HhhcccCccceecccccccccccc----
Q 043930 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQ--SFANLNNIMRLDISDNMLTGFVSA---- 294 (629)
Q Consensus 221 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~---- 294 (629)
.|.++.+|++|+|++|+|++.....+. .+.+|++|+|++|+|+ .++. .+..+.+|++|+|++|.|... +.
T Consensus 59 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~ 134 (176)
T 1a9n_A 59 GFPLLRRLKTLLVNNNRICRIGEGLDQ--ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLY 134 (176)
T ss_dssp CCCCCSSCCEEECCSSCCCEECSCHHH--HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHH
T ss_pred ccccCCCCCEEECCCCcccccCcchhh--cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHH
Confidence 355667777777777777633222224 5677777777777775 3333 566777777777777777643 33
Q ss_pred cccCCCCCcEEEecCCccCC
Q 043930 295 DICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 295 ~l~~l~~L~~L~L~~N~l~~ 314 (629)
.+..+.+|++||+++|.+..
T Consensus 135 ~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 135 VIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp HHHHCTTCSEETTEECCHHH
T ss_pred HHHHCCccceeCCCcCCHHH
Confidence 36677777777777776654
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=1.6e-15 Score=158.58 Aligned_cols=168 Identities=14% Similarity=0.117 Sum_probs=82.4
Q ss_pred cCCCEEECCCCCCCccChhhhcC-----CCCCcEEEccCCcCCCCchhhh-hCCCCCcEEEccCCcCccCCCchhc----
Q 043930 108 LDLIYFHANTNRLCGIIPETFAN-----MHRLEEFDVSNNRLVGPFPTVA-LTWKRNLYLDLRFNNFEGELPPELF---- 177 (629)
Q Consensus 108 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~ip~~~~---- 177 (629)
.+|++|+|++|+|+......|.. ..+|++|+|++|.|.+.....+ ..+.+|++|+|++|+|++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56777777777776433233222 2567777777776654322222 2345566666666666532222211
Q ss_pred --cCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccC----CcccccCCC
Q 043930 178 --QTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCL----PSEIGSGEY 251 (629)
Q Consensus 178 --~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~~~~~~l 251 (629)
..+|++|+|++|.|++..... +...+..+.+|++|+|++|.|++.. ...+. .+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~-------------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~--~~ 210 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAV-------------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD--RN 210 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHH-------------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG--GC
T ss_pred hcCCccceeeCCCCCCChHHHHH-------------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh--cC
Confidence 144555555555554211110 1122334455666666666665321 22222 34
Q ss_pred CCCcEEEecCCccccc----chHHhhcccCccceecccccccccccccc
Q 043930 252 KNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGFVSADI 296 (629)
Q Consensus 252 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 296 (629)
.+|++|+|++|.|++. +...+..+.+|++|||++|.|++.....|
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 5566666666666532 22233344556666666666554433333
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=1.7e-15 Score=158.40 Aligned_cols=85 Identities=12% Similarity=-0.048 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCccccCchhhhCC-----cCCCEEECCCCCCCccChhhh-cCCCCCcEEEccCCcCCCCchhhh-----h
Q 043930 85 FVAMIDLNKAEIAAHLPPEMGWL-----LDLIYFHANTNRLCGIIPETF-ANMHRLEEFDVSNNRLVGPFPTVA-----L 153 (629)
Q Consensus 85 ~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~l-----~ 153 (629)
.|+.|+|++|+|+......|..+ .+|++|+|++|.|++.....+ ..+.+|++|+|++|.|++.....+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 35555555555543322222221 455555555555543211111 123345555555555543222222 1
Q ss_pred CCCCCcEEEccCCcCc
Q 043930 154 TWKRNLYLDLRFNNFE 169 (629)
Q Consensus 154 ~l~~L~~L~Ls~n~l~ 169 (629)
...+|++|+|++|.|+
T Consensus 153 ~~~~L~~L~Ls~n~l~ 168 (372)
T 3un9_A 153 DQCQITTLRLSNNPLT 168 (372)
T ss_dssp TTCCCCEEECCSSCCH
T ss_pred cCCccceeeCCCCCCC
Confidence 2344555555555554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=8.5e-14 Score=128.85 Aligned_cols=103 Identities=21% Similarity=0.318 Sum_probs=49.8
Q ss_pred HHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccc
Q 043930 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD 285 (629)
Q Consensus 206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 285 (629)
+|++++|+++. ++..+. .+|++|+|++|+|++..+..+. .+.+|++|+|++|+|++.....|.++.+|++|+|++
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44455555442 333221 4455555555555543344443 455555555555555544444444555555555555
Q ss_pred ccccccccccccCCCCCcEEEecCCccC
Q 043930 286 NMLTGFVSADICKLPHLLNFTFSNNFFQ 313 (629)
Q Consensus 286 N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 313 (629)
|+|+++....|.++.+|++|+|++|.|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555444344455555555555555544
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=2.2e-13 Score=126.56 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=57.2
Q ss_pred HHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccc
Q 043930 206 YIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD 285 (629)
Q Consensus 206 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 285 (629)
.+++++|+++ .++..+. .+|++|+|++|+|++..+..+. .+.+|++|+|++|+|++.....|.++.+|++|+|++
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhc--CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4555555554 3343332 5566666666666544444444 556666666666666544444455566666666666
Q ss_pred ccccccccccccCCCCCcEEEecCCccCC
Q 043930 286 NMLTGFVSADICKLPHLLNFTFSNNFFQG 314 (629)
Q Consensus 286 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 314 (629)
|+|+++....|.++.+|++|+|++|.|..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 66655444445556666666666665553
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=1.3e-13 Score=127.64 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=89.4
Q ss_pred CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEE
Q 043930 227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFT 306 (629)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 306 (629)
..++|++++|+|+ .++..+. .+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCcC-ccCccCC----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 3578889888888 5666543 6788999999999877788888888999999999998887767778888999999
Q ss_pred ecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 307 FSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 307 L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
|++|+|+++..+.|.++.+|++|+|++|.|.+.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999888877888888999999999887643
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=1.4e-12 Score=121.12 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=74.9
Q ss_pred cEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEec
Q 043930 229 QEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFS 308 (629)
Q Consensus 229 ~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~ 308 (629)
+.|++++|+++ .++..+. .+|++|+|++|+|++..+..|.++.+|++|+|++|+|+++....|.++.+|++|+|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 56777777775 5665443 567777777777776666677777777777777777776555556677777777777
Q ss_pred CCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 309 NNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 309 ~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
+|+|.++....|.++.+|++|+|++|.|.+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 777777666667777777777777777664
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.26 E-value=1.9e-11 Score=126.71 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=96.4
Q ss_pred chhhhhCCCCCcEEEccCCcCccCCCchhccCCCCEEEecCccccccCchhhhhhhhHHHHhcCCcccccCCccccCCCC
Q 043930 148 FPTVALTWKRNLYLDLRFNNFEGELPPELFQTGLDIIFLNHNWFRGSIPETIGESLARYIVLSSNNFTGCLPRSIGYMKE 227 (629)
Q Consensus 148 ~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 227 (629)
+...+..+++|+.|+|++|.-. .+.. +...+|++|+|..|.+.... ++.|. ...+++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~--------l~~l~-------------~~~lp~ 220 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSV--------VEDIL-------------GSDLPN 220 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHH--------HHHHH-------------HSBCTT
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHH--------HHHHH-------------HccCCC
Confidence 3445566677777777766311 2222 22367777777766655221 11111 124567
Q ss_pred CcEEEccC--Cccccc-----CCcccccCCCCCCcEEEecCCcccccchHHhh---cccCccceecccccccccccc---
Q 043930 228 LQEIILME--NQLSGC-----LPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFA---NLNNIMRLDISDNMLTGFVSA--- 294 (629)
Q Consensus 228 L~~L~Ls~--n~l~~~-----~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~--- 294 (629)
|++|+|+. |...+. +...+..+.+.+|++|+|.+|.+.+.....+. .+++|++|+|++|.|++....
T Consensus 221 L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 221 LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp CCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred CcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH
Confidence 77777653 221111 11122212467888888888888754444443 467889999988888764332
Q ss_pred -cccCCCCCcEEEecCCccCCcchhhhcC-CCCCceecccCCc
Q 043930 295 -DICKLPHLLNFTFSNNFFQGMAMECISG-SRDDVYFEEKGNC 335 (629)
Q Consensus 295 -~l~~l~~L~~L~L~~N~l~~~~~~~l~~-l~~L~~L~l~~N~ 335 (629)
.+..+.+|+.|+|++|.|++.....|.. + ...+++++|.
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3345688999999999888766555553 3 4567777776
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=9.7e-12 Score=128.88 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=73.4
Q ss_pred HHhcCC-cccccCCccccCCCCCcEEEccC-CcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecc
Q 043930 207 IVLSSN-NFTGCLPRSIGYMKELQEIILME-NQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDIS 284 (629)
Q Consensus 207 L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 284 (629)
++++++ +|+ .++. |..+.+|++|+|++ |+|++.....|. .|.+|++|+|++|+|++..+..|.+|.+|++|+|+
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 456665 666 3666 77777788888875 777755555565 67778888888888877777777777888888888
Q ss_pred cccccccccccccCCCCCcEEEecCCccCCc
Q 043930 285 DNMLTGFVSADICKLPHLLNFTFSNNFFQGM 315 (629)
Q Consensus 285 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 315 (629)
+|+|+++....|..+. |++|+|.+|.|...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 8887765555555454 77888887777643
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.22 E-value=9.9e-12 Score=131.25 Aligned_cols=220 Identities=11% Similarity=0.054 Sum_probs=154.2
Q ss_pred chhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc-C
Q 043930 101 PPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ-T 179 (629)
Q Consensus 101 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~ 179 (629)
..+|.++.+|+.+.|.++. ..+...+|.++.+|+.++|..+ ++......+.++..|+.+++.++... +.+..+. .
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 4567888899999987653 3345567888889999988776 44444566788888888888766543 3333333 7
Q ss_pred CCCEEEecCccccccCchhh-hhhhhHHHHhcCCcccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEE
Q 043930 180 GLDIIFLNHNWFRGSIPETI-GESLARYIVLSSNNFTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFD 258 (629)
Q Consensus 180 ~L~~L~L~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~ 258 (629)
+|+.+.+..+... .....+ +...|+.+.+..+... .....|.++..|+.+.+..+.+.+ ..+. .+.+|+.+.
T Consensus 231 ~l~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~---~~F~--~~~~L~~i~ 303 (394)
T 4fs7_A 231 GVKNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE---KTFY--GCSSLTEVK 303 (394)
T ss_dssp CCCEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT---TTTT--TCTTCCEEE
T ss_pred CCceEEECCCcee-cccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc---cccc--ccccccccc
Confidence 7888888654321 111222 2235566666554332 445667788888888887665431 2333 688999999
Q ss_pred ecCCcccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930 259 IRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN 334 (629)
Q Consensus 259 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 334 (629)
+.++ ++.+....|.++.+|+.|+|.++ ++.+....|.+|.+|+.++|..| +..+...+|.+|.+|+.+++..+
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 9765 55455567889999999999755 66666778999999999999876 77788889999999999998754
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1e-11 Score=128.76 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=84.5
Q ss_pred cEEEccCC-cccccCCcccccCCCCCCcEEEecC-CcccccchHHhhcccCccceecccccccccccccccCCCCCcEEE
Q 043930 229 QEIILMEN-QLSGCLPSEIGSGEYKNLTVFDIRS-NKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFT 306 (629)
Q Consensus 229 ~~L~Ls~n-~l~~~~p~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~ 306 (629)
..++++++ +|+ .++. +. .+.+|++|+|++ |+|++.....|.+|.+|++|+|++|+|+++.+..|.+|.+|++|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC-ccCC-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 35678877 777 5777 66 778888888885 888877777888888888888888888887777888888888888
Q ss_pred ecCCccCCcchhhhcCCCCCceecccCCcccc
Q 043930 307 FSNNFFQGMAMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 307 L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
|++|+|+++....|..+. |++|+|.+|.|.+
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888887776666665 8888888888774
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=8.3e-11 Score=124.11 Aligned_cols=113 Identities=11% Similarity=0.123 Sum_probs=87.8
Q ss_pred CccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccC
Q 043930 219 PRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICK 298 (629)
Q Consensus 219 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 298 (629)
..+|.++.+|+.+.|.++... .....+. ++.+|+.+++. +.++......|.++.+|+.++|.++ ++.+....|.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~--~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFM--NCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTT--TCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cceeeecccccEEecccccce-ecCcccc--cccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 356778888999988766543 3333444 78899999996 4455455677899999999999865 66666678999
Q ss_pred CCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccc
Q 043930 299 LPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLA 337 (629)
Q Consensus 299 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~ 337 (629)
|.+|++|.|..+ ++.+...+|.+|.+|+.+++.+|...
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 999999999654 77888889999999999999987654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=2.2e-11 Score=126.26 Aligned_cols=208 Identities=8% Similarity=0.064 Sum_probs=136.0
Q ss_pred CcccEEEEEcCCCCccc-c-------CchhhhCCcCCCEEECCCCCCC---------ccChhhhcCCCCCcEEEccCCcC
Q 043930 82 QERFVAMIDLNKAEIAA-H-------LPPEMGWLLDLIYFHANTNRLC---------GIIPETFANMHRLEEFDVSNNRL 144 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~-~-------~p~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l 144 (629)
...+++.|.|..+.+.+ . +..++.++.+|+.|.|.++.+. +.+...+..+++|++|+|++|.-
T Consensus 105 ~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 105 KLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp TGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred CchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 34457777777665542 1 2334566789999998765431 23556678889999999998831
Q ss_pred CCCchhhhhCCCCCcEEEccCCcCccCCCchhc---cCCCCEEEecCc--cccccC-chhhhhhhhHHHHhcCCcccccC
Q 043930 145 VGPFPTVALTWKRNLYLDLRFNNFEGELPPELF---QTGLDIIFLNHN--WFRGSI-PETIGESLARYIVLSSNNFTGCL 218 (629)
Q Consensus 145 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~---~~~L~~L~L~~n--~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~ 218 (629)
.. +.. + .+.+|++|+|..|.+.......+. ..+|++|+|+.+ ...+.. ...+ . ..+
T Consensus 185 l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l-----~----------~~l 246 (362)
T 2ra8_A 185 LS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF-----R----------PLF 246 (362)
T ss_dssp CB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT-----G----------GGS
T ss_pred ce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH-----H----------HHH
Confidence 11 222 3 378999999999988754433443 278999998642 222110 0000 0 000
Q ss_pred CccccCCCCCcEEEccCCcccccCCccccc-CCCCCCcEEEecCCcccccc----hHHhhcccCccceeccccccccccc
Q 043930 219 PRSIGYMKELQEIILMENQLSGCLPSEIGS-GEYKNLTVFDIRSNKFHGSV----PQSFANLNNIMRLDISDNMLTGFVS 293 (629)
Q Consensus 219 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~ 293 (629)
....+++|++|+|.+|.+.+.....+.. ..+.+|++|+|+.|.|++.. ...+..+++|++|+|++|.|++...
T Consensus 247 --~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 247 --SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp --CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred --hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 0134689999999999987544333321 24789999999999998643 3334567999999999999987655
Q ss_pred ccccC-CCCCcEEEecCCc
Q 043930 294 ADICK-LPHLLNFTFSNNF 311 (629)
Q Consensus 294 ~~l~~-l~~L~~L~L~~N~ 311 (629)
..|.. + ...+++++|.
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 55554 3 4678998887
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.11 E-value=5.4e-10 Score=117.84 Aligned_cols=245 Identities=13% Similarity=0.022 Sum_probs=145.9
Q ss_pred CcccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCc------------------
Q 043930 82 QERFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNR------------------ 143 (629)
Q Consensus 82 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~------------------ 143 (629)
.+.+|+.++|.. .++.+...+|.++.+|+.++|.++ +..+-..+|.++.+|+.+.+..+-
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 346789999864 466666678888999999999765 444445677777777776654331
Q ss_pred ---CCCCchhhhhCCCCCcEEEccCCcCccCCCchhcc--CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCcc---
Q 043930 144 ---LVGPFPTVALTWKRNLYLDLRFNNFEGELPPELFQ--TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNNF--- 214 (629)
Q Consensus 144 ---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l--- 214 (629)
+......+|.++.+|+.++|.++.. .+....|. .+|+.++|..+ ++......+.. ..|+.+.+..+..
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~ 223 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG 223 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC
T ss_pred CccccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee
Confidence 0111124566777788888765532 45555554 56777777554 22111112211 2233333322211
Q ss_pred ------------------cccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhccc
Q 043930 215 ------------------TGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLN 276 (629)
Q Consensus 215 ------------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 276 (629)
.......|.++.+|+.+.+..+... .....+. .+..|+.+.+..+.+. ...|.++.
T Consensus 224 ~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~--~~~~l~~~~~~~~~i~---~~~F~~~~ 297 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFY--NCSGLKKVIYGSVIVP---EKTFYGCS 297 (394)
T ss_dssp TTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTT--TCTTCCEEEECSSEEC---TTTTTTCT
T ss_pred hhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccc--cccccceeccCceeec---cccccccc
Confidence 1111233444555555555544332 2222222 4556666666555433 23567788
Q ss_pred CccceecccccccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcccccc
Q 043930 277 NIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEME 340 (629)
Q Consensus 277 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 340 (629)
+|+.+.+.++ +..+....|.++.+|+.++|.++ ++.+...+|.+|.+|+.+++..| +..+.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 8888888765 55555677888999999999654 77777888999999999998766 54443
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.04 E-value=7e-10 Score=116.98 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=78.2
Q ss_pred CCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccccccccccc
Q 043930 218 LPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADIC 297 (629)
Q Consensus 218 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 297 (629)
....|.++.+|+.+++. +.++......|. ++.+|+.++|.++ ++.+....|.++.+|+.|.|..+ ++.+....|.
T Consensus 280 ~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~--~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFS-SRITELPESVFA--GCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp CTTTTTTCTTCCEEECC-TTCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred cCcccccccccccccCC-CcccccCceeec--CCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence 34678889999999996 445523333444 7899999999865 55455678999999999999755 6667778899
Q ss_pred CCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCcc
Q 043930 298 KLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCL 336 (629)
Q Consensus 298 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l 336 (629)
+|.+|+.++|.+|... .+.+..+..|+.|.+..|.+
T Consensus 355 ~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 9999999999988643 25677888999998877654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.95 E-value=8.3e-09 Score=108.05 Aligned_cols=109 Identities=9% Similarity=0.093 Sum_probs=65.1
Q ss_pred cccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccccccccccCCC
Q 043930 221 SIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLP 300 (629)
Q Consensus 221 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 300 (629)
.|.++.+|+.+.+.++ ++......+. ++.+|+.+++..+ ++......|.++.+|+.++|.++.++.+....|.+|.
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~--~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQ--NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTT--TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccCCccceEEEcCCC-ccEeCccccc--eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 3444555555555443 3312222222 5566666666543 3333345566777777777777776666566677777
Q ss_pred CCcEEEecCCccCCcchhhhcCCCCCceecccCC
Q 043930 301 HLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGN 334 (629)
Q Consensus 301 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 334 (629)
+|+.++|..+ ++.+...+|.+|.+|+.+.+..+
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 7777777543 66666667777777777777543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=2.8e-10 Score=106.61 Aligned_cols=120 Identities=11% Similarity=0.111 Sum_probs=91.0
Q ss_pred CCccccCCCCCcEEEccCC-ccccc----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccceecccccc
Q 043930 218 LPRSIGYMKELQEIILMEN-QLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNML 288 (629)
Q Consensus 218 ~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l 288 (629)
+...+....+|++|+|++| .|.+. +...+. ...+|++|+|++|.|.+. +...+....+|++|+|++|.|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~--~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK--TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHT--TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHH--hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3345667789999999999 88643 223333 568899999999999754 344555668899999999999
Q ss_pred cccc----cccccCCCCCcEEEe--cCCccCCcc----hhhhcCCCCCceecccCCccccc
Q 043930 289 TGFV----SADICKLPHLLNFTF--SNNFFQGMA----MECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 289 ~~~~----~~~l~~l~~L~~L~L--~~N~l~~~~----~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
++.. ...+....+|++|+| ++|.|++.. .+.+..+..|++|+|++|.|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 8653 455667789999999 889998754 35566678999999999998754
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=2.2e-09 Score=100.40 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=84.0
Q ss_pred cccEEEEEcCCC-Ccccc----CchhhhCCcCCCEEECCCCCCCcc----ChhhhcCCCCCcEEEccCCcCCCC----ch
Q 043930 83 ERFVAMIDLNKA-EIAAH----LPPEMGWLLDLIYFHANTNRLCGI----IPETFANMHRLEEFDVSNNRLVGP----FP 149 (629)
Q Consensus 83 ~~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~ 149 (629)
...|+.|+|++| .|... +...+...++|++|+|++|.|.+. +...+....+|++|+|++|.|.+. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 456889999999 88654 344556678999999999998753 445566778999999999999754 34
Q ss_pred hhhhCCCCCcEEEc--cCCcCccCCCchhcc-----CCCCEEEecCcccccc
Q 043930 150 TVALTWKRNLYLDL--RFNNFEGELPPELFQ-----TGLDIIFLNHNWFRGS 194 (629)
Q Consensus 150 ~~l~~l~~L~~L~L--s~n~l~~~ip~~~~~-----~~L~~L~L~~n~l~~~ 194 (629)
..+....+|++|+| ++|.|.+.....+.. .+|++|+|++|.|...
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 55667788999999 889887543333322 7899999999988633
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.72 E-value=8.5e-08 Score=100.29 Aligned_cols=242 Identities=12% Similarity=0.051 Sum_probs=153.1
Q ss_pred ccEEEEEcCCCCccccCchhhhCCcCCCEEECCCCCCCccChhhhcCCCCCcEEEccCCcCCCCchhhhhCCCCCcEEEc
Q 043930 84 RFVAMIDLNKAEIAAHLPPEMGWLLDLIYFHANTNRLCGIIPETFANMHRLEEFDVSNNRLVGPFPTVALTWKRNLYLDL 163 (629)
Q Consensus 84 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 163 (629)
.+|+.+.|.. .++.+-..+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++.....+|.. .+|+.++|
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 4577777754 466666678889999999999754 555556778776 6888877654 43333344544 47999998
Q ss_pred cCCcCccCCCchhcc-CCCCEEEecCccccccCchhhhh-hhhHHHHhcCCc----------------------------
Q 043930 164 RFNNFEGELPPELFQ-TGLDIIFLNHNWFRGSIPETIGE-SLARYIVLSSNN---------------------------- 213 (629)
Q Consensus 164 s~n~l~~~ip~~~~~-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~---------------------------- 213 (629)
.++- + .+....|. .+|+.+.+-.+--. .....+.. ..++.+.+..+.
T Consensus 121 p~~~-~-~i~~~~F~~~~l~~~~~~~~v~~-i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGAT-T-EIGNYIFYNSSVKRIVIPKSVTT-IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTTC-C-EECTTTTTTCCCCEEEECTTCCE-ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCcc-c-cccccccccceeeeeeccceeec-cccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 7653 3 44445544 66777766544211 11111111 122222111110
Q ss_pred -------ccccCCccccCCCCCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccc
Q 043930 214 -------FTGCLPRSIGYMKELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDN 286 (629)
Q Consensus 214 -------l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 286 (629)
+.......+..+.+|+.+.+..+ +.......+. .+.+|+.+.+..+ ++......|.++.+|+.+++..+
T Consensus 198 ~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~ 273 (379)
T 4h09_A 198 EFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK 273 (379)
T ss_dssp EEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC
T ss_pred ccccccceeEEeecccccccccceeeeccc-eeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhcccccccc
Confidence 01111233445566777776554 2212223333 6788999999776 55455567888899999999654
Q ss_pred cccccccccccCCCCCcEEEecCCccCCcchhhhcCCCCCceecccCCccccc
Q 043930 287 MLTGFVSADICKLPHLLNFTFSNNFFQGMAMECISGSRDDVYFEEKGNCLAEM 339 (629)
Q Consensus 287 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~l~~~ 339 (629)
+..+....|.++.+|+.++|.++.++.+...+|.+|.+|+.++|..+ ++.+
T Consensus 274 -i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 274 -VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp -CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEE
T ss_pred -ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEE
Confidence 55555667899999999999999999888899999999999999754 4433
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.55 E-value=1e-08 Score=100.84 Aligned_cols=122 Identities=13% Similarity=0.153 Sum_probs=79.2
Q ss_pred HHHhcCCcccccCC-ccccCCCCCcE--EEccCCcccccCCccc--ccCCCCCCcEEEecCCcccc--cchHHhhcccCc
Q 043930 206 YIVLSSNNFTGCLP-RSIGYMKELQE--IILMENQLSGCLPSEI--GSGEYKNLTVFDIRSNKFHG--SVPQSFANLNNI 278 (629)
Q Consensus 206 ~L~l~~n~l~~~~~-~~l~~l~~L~~--L~Ls~n~l~~~~p~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L 278 (629)
.|...+|...+.+. ..|.....|+. ++++.|.+. .+...+ ...++.+|++|+|++|+|++ .++..+..+.+|
T Consensus 120 ~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L 198 (267)
T 3rw6_A 120 IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 198 (267)
T ss_dssp HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTC
T ss_pred HHHhccchhccccCHHHcCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCC
Confidence 34444444443322 22444455555 667777543 222111 11257889999999999986 345677789999
Q ss_pred cceecccccccccccccccCCC--CCcEEEecCCccCCcc-------hhhhcCCCCCceec
Q 043930 279 MRLDISDNMLTGFVSADICKLP--HLLNFTFSNNFFQGMA-------MECISGSRDDVYFE 330 (629)
Q Consensus 279 ~~L~Ls~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~-------~~~l~~l~~L~~L~ 330 (629)
++|+|++|+|.+. ..+..+. +|++|+|++|.+.+.. ...+..+++|+.||
T Consensus 199 ~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 199 KILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999999999875 2333333 8999999999987632 24567788888887
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=1.6e-07 Score=85.92 Aligned_cols=87 Identities=8% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCCcEEEccCCcccccCCcccccCCCCCCcEEEecCC-cccccchHHhhcc----cCccceeccccc-ccccccccccCC
Q 043930 226 KELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSN-KFHGSVPQSFANL----NNIMRLDISDNM-LTGFVSADICKL 299 (629)
Q Consensus 226 ~~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~l~~l 299 (629)
-+|++|||++|.|++..-..+. .+.+|++|+|++| +|++.....+..+ .+|++|+|++|. |++.....+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4678888888877765555554 6778888888887 4776555556654 368888888874 776666667777
Q ss_pred CCCcEEEecCCc-cCC
Q 043930 300 PHLLNFTFSNNF-FQG 314 (629)
Q Consensus 300 ~~L~~L~L~~N~-l~~ 314 (629)
.+|++|+|++|. +++
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 888888888774 444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=1.9e-07 Score=91.76 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCccc--cCchhhhCCcCCCEEECCCCCCCccChhhhcCCC--CCcEEEccCCcCCC
Q 043930 85 FVAMIDLNKAEIAA--HLPPEMGWLLDLIYFHANTNRLCGIIPETFANMH--RLEEFDVSNNRLVG 146 (629)
Q Consensus 85 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~ 146 (629)
+|+.|+|++|+|.+ .++..+..+.+|++|+|++|+|.+. ..+..+. +|++|+|++|.+.+
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 45556666666555 2234444555555555555555543 2222222 55555555555543
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.6e-07 Score=85.92 Aligned_cols=89 Identities=8% Similarity=0.046 Sum_probs=76.0
Q ss_pred CCCCcEEEecCCcccccchHHhhcccCccceeccccc-ccccccccccCC----CCCcEEEecCCc-cCCcchhhhcCCC
Q 043930 251 YKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNM-LTGFVSADICKL----PHLLNFTFSNNF-FQGMAMECISGSR 324 (629)
Q Consensus 251 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~ 324 (629)
.-+|++|||++|.|++.....+.++.+|++|+|++|. |++.....+..+ .+|++|+|++|. |++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999998777788899999999999995 887766777775 479999999985 9988888899999
Q ss_pred CCceecccCCc-cccc
Q 043930 325 DDVYFEEKGNC-LAEM 339 (629)
Q Consensus 325 ~L~~L~l~~N~-l~~~ 339 (629)
+|++|+|+++. |++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 99999999874 6653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.31 E-value=3.4e-07 Score=85.31 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=83.5
Q ss_pred cccCCCCCcEEEccCC-ccccc----CCcccccCCCCCCcEEEecCCccccc----chHHhhcccCccceeccccccccc
Q 043930 221 SIGYMKELQEIILMEN-QLSGC----LPSEIGSGEYKNLTVFDIRSNKFHGS----VPQSFANLNNIMRLDISDNMLTGF 291 (629)
Q Consensus 221 ~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~ 291 (629)
.+.+...|++|+|++| +|.+. +.+.+. ....|++|+|++|+|.+. +.+.+.....|++|+|++|.|++.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~--~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAAC--NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHT--TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHh--hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 4455578999999885 77543 333444 567899999999999753 445556678899999999999865
Q ss_pred cc----ccccCCCCCcEEEecCC---ccCCc----chhhhcCCCCCceecccCCcccc
Q 043930 292 VS----ADICKLPHLLNFTFSNN---FFQGM----AMECISGSRDDVYFEEKGNCLAE 338 (629)
Q Consensus 292 ~~----~~l~~l~~L~~L~L~~N---~l~~~----~~~~l~~l~~L~~L~l~~N~l~~ 338 (629)
.. +.+.....|++|+|++| .|.+. +.+.+.....|++|+++.|++..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 33 34556678999999865 44443 34566777899999998887653
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.28 E-value=3.4e-07 Score=85.24 Aligned_cols=87 Identities=17% Similarity=0.123 Sum_probs=50.1
Q ss_pred hhhCCcCCCEEECCCC-CCCcc----ChhhhcCCCCCcEEEccCCcCCCC----chhhhhCCCCCcEEEccCCcCccCCC
Q 043930 103 EMGWLLDLIYFHANTN-RLCGI----IPETFANMHRLEEFDVSNNRLVGP----FPTVALTWKRNLYLDLRFNNFEGELP 173 (629)
Q Consensus 103 ~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~ip 173 (629)
.+.+-..|++|+|++| +|... +.+.+...+.|++|+|++|.|.+. +.+.+...+.|++|+|++|.|.+...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3344566777777764 55432 445556666777777777776532 33444456667777777777664333
Q ss_pred chhcc-----CCCCEEEecCc
Q 043930 174 PELFQ-----TGLDIIFLNHN 189 (629)
Q Consensus 174 ~~~~~-----~~L~~L~L~~n 189 (629)
..+.. ..|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 32222 45666666654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.78 E-value=0.0015 Score=56.48 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=31.4
Q ss_pred EEEccCCccc-ccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceeccccccc
Q 043930 230 EIILMENQLS-GCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLT 289 (629)
Q Consensus 230 ~L~Ls~n~l~-~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 289 (629)
+++.++++++ ..++..+. .+|++|+|++|+|+..-...|..+.+|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666654 24444332 35666666666666444455556666666666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.51 E-value=0.0024 Score=55.19 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=39.6
Q ss_pred cEEEecCCccc-ccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCCccC
Q 043930 255 TVFDIRSNKFH-GSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNNFFQ 313 (629)
Q Consensus 255 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 313 (629)
.+++.++++|+ ..++..|. .+|++|+|++|+|+.+....|..+.+|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777776 23443221 35788888888888766666777888888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.97 E-value=2.8 Score=33.79 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=26.8
Q ss_pred cccccchHHhhcccCccceecccccccccccccccCCCCCcEEEecCC
Q 043930 263 KFHGSVPQSFANLNNIMRLDISDNMLTGFVSADICKLPHLLNFTFSNN 310 (629)
Q Consensus 263 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N 310 (629)
.++.+....|.++.+|+.+.|-.+ ++.+....|.+|.+|+.+.|.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444455666666666666554 33344455666666666666553
No 166
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=72.90 E-value=0.93 Score=42.27 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=25.0
Q ss_pred CCcEEEccCCcccccCCcccccCCCCCCcEEEecCCcccccchHHhhcccCccceecccccccc
Q 043930 227 ELQEIILMENQLSGCLPSEIGSGEYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISDNMLTG 290 (629)
Q Consensus 227 ~L~~L~Ls~n~l~~~~p~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 290 (629)
+|+..++.++.+.+. .+ .-.+|+..++.++.|++.. | .-.+|+..+|+++.|.+
T Consensus 131 ~l~~~~f~~~~l~~a---~f---~~a~L~~a~f~~~~L~~a~---f-~~a~l~~~~l~~a~l~~ 184 (214)
T 2w7z_A 131 NFNLVHFNQTRLVES---EF---FEVTWXXLLLEACDLTESN---W-LNTSLXGLDFSQNTFER 184 (214)
T ss_dssp EEEEEEEESCBCTTC---BC---TTCEEEEEEEESCBCTTCB---C-TTCCCTTCBCTTSBCSC
T ss_pred ccCceEEEecccCCC---Cc---cCCEEEEEEEEecccccCE---e-cCCeeccCCcccCCcCc
Confidence 345555555555432 11 1234556666666655421 1 11345555555555554
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.03 E-value=4.1 Score=32.76 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=17.7
Q ss_pred CCCCCcEEEecCCcccccchHHhhcccCccceeccc
Q 043930 250 EYKNLTVFDIRSNKFHGSVPQSFANLNNIMRLDISD 285 (629)
Q Consensus 250 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 285 (629)
++.+|+.+.|-.+ ++.+....|.++.+|+.+.|.+
T Consensus 18 ~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4555555555543 2223334455555555555544
No 168
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=70.34 E-value=2.9 Score=38.82 Aligned_cols=12 Identities=0% Similarity=0.265 Sum_probs=5.4
Q ss_pred CcEEEecCCccc
Q 043930 254 LTVFDIRSNKFH 265 (629)
Q Consensus 254 L~~L~Ls~n~l~ 265 (629)
|+..++.++.|.
T Consensus 132 l~~~~f~~~~l~ 143 (214)
T 2w7z_A 132 FNLVHFNQTRLV 143 (214)
T ss_dssp EEEEEEESCBCT
T ss_pred cCceEEEecccC
Confidence 444444444443
No 169
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=62.87 E-value=3 Score=38.15 Aligned_cols=7 Identities=0% Similarity=-0.007 Sum_probs=2.5
Q ss_pred EEecCCc
Q 043930 257 FDIRSNK 263 (629)
Q Consensus 257 L~Ls~n~ 263 (629)
.++.++.
T Consensus 100 ~~f~~~~ 106 (200)
T 2xt2_A 100 LSFERCI 106 (200)
T ss_dssp EEEESCB
T ss_pred eEEEcCc
Confidence 3333333
No 170
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=62.77 E-value=4.1 Score=37.17 Aligned_cols=8 Identities=0% Similarity=-0.097 Sum_probs=3.0
Q ss_pred EEccCCcC
Q 043930 161 LDLRFNNF 168 (629)
Q Consensus 161 L~Ls~n~l 168 (629)
-++.++++
T Consensus 74 ~~f~~~~l 81 (200)
T 2xt2_A 74 VRFVDCKM 81 (200)
T ss_dssp EEEESCBC
T ss_pred eEEEcCEe
Confidence 33333333
No 171
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=56.91 E-value=2.3 Score=51.84 Aligned_cols=6 Identities=17% Similarity=-0.175 Sum_probs=2.2
Q ss_pred ccCCcc
Q 043930 233 LMENQL 238 (629)
Q Consensus 233 Ls~n~l 238 (629)
..+.+|
T Consensus 1314 teG~nL 1319 (1752)
T 3h0g_A 1314 TDGINL 1319 (1752)
T ss_dssp CCSCCC
T ss_pred ecccCH
Confidence 333333
No 172
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=39.54 E-value=4.3 Score=37.54 Aligned_cols=12 Identities=33% Similarity=0.083 Sum_probs=5.2
Q ss_pred CcEEEccCCcCc
Q 043930 158 NLYLDLRFNNFE 169 (629)
Q Consensus 158 L~~L~Ls~n~l~ 169 (629)
|+..++.++++.
T Consensus 83 l~~~~f~~~~l~ 94 (216)
T 3pss_A 83 CLGLELRDCQAL 94 (216)
T ss_dssp CTTEEEESCBCT
T ss_pred cccCCcccCccc
Confidence 333444444443
No 173
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=30.93 E-value=15 Score=39.62 Aligned_cols=12 Identities=17% Similarity=-0.020 Sum_probs=5.2
Q ss_pred CcEEEccCCccc
Q 043930 228 LQEIILMENQLS 239 (629)
Q Consensus 228 L~~L~Ls~n~l~ 239 (629)
+...+|.++.|.
T Consensus 162 l~~i~L~Ga~I~ 173 (613)
T 3nb2_A 162 SNTINLGGCYID 173 (613)
T ss_dssp TTEEEETTEEEE
T ss_pred cceeeecCcEEe
Confidence 444444444443
No 174
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=28.09 E-value=53 Score=28.15 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=4.6
Q ss_pred ccceeccccccc
Q 043930 278 IMRLDISDNMLT 289 (629)
Q Consensus 278 L~~L~Ls~N~l~ 289 (629)
|+..++.+..+.
T Consensus 78 l~~a~f~~a~l~ 89 (152)
T 3n90_A 78 VTKVNLTNANLE 89 (152)
T ss_dssp CTTCBCTTCBCT
T ss_pred cCCCCcCCCCCC
Confidence 333333343333
No 175
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=22.39 E-value=39 Score=36.47 Aligned_cols=15 Identities=0% Similarity=0.016 Sum_probs=8.5
Q ss_pred CCCcEEEecCCccCC
Q 043930 300 PHLLNFTFSNNFFQG 314 (629)
Q Consensus 300 ~~L~~L~L~~N~l~~ 314 (629)
..+...+|.++.|.+
T Consensus 160 ~~l~~i~L~Ga~I~~ 174 (613)
T 3nb2_A 160 EKSNTINLGGCYIDL 174 (613)
T ss_dssp CSTTEEEETTEEEEC
T ss_pred cccceeeecCcEEec
Confidence 345666666665543
Done!