Query 043931
Match_columns 161
No_of_seqs 106 out of 129
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 99.5 4.9E-14 1.1E-18 95.4 4.3 66 61-136 2-67 (69)
2 smart00568 GRAM domain in gluc 99.3 3.1E-12 6.8E-17 84.7 5.6 59 68-137 2-60 (61)
3 PF14470 bPH_3: Bacterial PH d 96.7 0.016 3.4E-07 40.2 7.9 74 69-156 2-75 (96)
4 PF14844 PH_BEACH: PH domain a 88.4 1.2 2.7E-05 32.1 5.0 86 73-160 1-90 (106)
5 PF00169 PH: PH domain; Inter 85.0 3.6 7.7E-05 27.1 5.4 62 98-160 19-84 (104)
6 PF08498 Sterol_MT_C: Sterol m 83.7 0.58 1.3E-05 33.3 1.2 53 13-65 6-58 (67)
7 KOG4347 GTPase-activating prot 82.9 0.85 1.8E-05 44.6 2.3 61 64-138 14-76 (671)
8 PF07289 DUF1448: Protein of u 76.1 3.7 8E-05 37.3 4.0 64 65-141 148-213 (339)
9 PF08567 TFIIH_BTF_p62_N: TFII 75.8 14 0.00031 26.4 6.3 54 89-155 12-67 (79)
10 PF11605 Vps36_ESCRT-II: Vacuo 74.5 6 0.00013 29.1 4.1 48 88-146 35-82 (89)
11 smart00683 DM16 Repeats in sea 73.9 6.1 0.00013 27.2 3.8 39 84-135 15-53 (55)
12 smart00233 PH Pleckstrin homol 73.2 17 0.00038 23.0 5.7 40 120-160 42-82 (102)
13 KOG2415 Electron transfer flav 68.2 2.9 6.2E-05 40.2 1.5 51 30-83 345-397 (621)
14 KOG4471 Phosphatidylinositol 3 66.9 6.5 0.00014 38.8 3.6 64 62-138 30-93 (717)
15 cd01244 PH_RasGAP_CG9209 RAS_G 61.2 20 0.00043 26.5 4.6 33 122-155 43-76 (98)
16 cd00900 PH-like Pleckstrin hom 58.4 44 0.00096 21.1 5.7 62 87-160 18-81 (99)
17 cd00821 PH Pleckstrin homology 54.6 51 0.0011 20.6 5.6 58 93-160 21-78 (96)
18 KOG1032 Uncharacterized conser 54.0 19 0.0004 34.7 4.3 59 68-138 117-175 (590)
19 PF12068 DUF3548: Domain of un 54.0 19 0.00042 30.5 3.9 40 117-158 107-146 (213)
20 PF10882 bPH_5: Bacterial PH d 52.9 14 0.00031 26.1 2.6 24 118-141 13-36 (100)
21 PF09890 DUF2117: Uncharacteri 51.2 12 0.00026 32.2 2.2 63 17-92 49-114 (215)
22 KOG3294 WW domain binding prot 44.9 12 0.00027 33.0 1.5 38 87-135 45-83 (261)
23 PF01845 CcdB: CcdB protein; 44.6 28 0.00061 26.2 3.2 35 121-161 30-65 (102)
24 PRK13708 plasmid maintenance p 43.8 29 0.00063 26.5 3.1 34 122-161 30-64 (101)
25 cd01239 PH_PKD Protein kinase 34.7 58 0.0013 25.7 3.6 38 118-157 36-76 (117)
26 PF03517 Voldacs: Regulator of 31.5 37 0.0008 26.1 2.0 15 91-105 1-15 (135)
27 COG1098 VacB Predicted RNA bin 31.0 20 0.00044 28.8 0.5 36 18-55 36-78 (129)
28 KOG0937 Adaptor complexes medi 30.7 69 0.0015 30.2 4.0 49 101-151 245-293 (424)
29 cd00562 NifX_NifB This CD repr 30.4 89 0.0019 21.4 3.7 10 99-108 1-10 (102)
30 PF08348 PAS_6: YheO-like PAS 28.1 1.3E+02 0.0028 22.9 4.5 58 33-97 46-104 (118)
31 PF14472 DUF4429: Domain of un 27.7 89 0.0019 22.7 3.4 29 124-156 27-58 (94)
32 cd00851 MTH1175 This uncharact 26.5 1.3E+02 0.0029 20.6 4.0 10 99-108 2-11 (103)
33 PF07676 PD40: WD40-like Beta 26.3 42 0.00091 19.7 1.2 11 97-107 20-30 (39)
34 PF05553 DUF761: Cotton fibre 24.8 35 0.00075 21.9 0.7 19 17-35 5-23 (38)
35 cd00274 Chemokine_CX3C Chemoki 22.2 1.1E+02 0.0024 22.3 3.0 27 80-106 26-53 (76)
36 cd01178 IPT_NFAT IPT domain of 22.1 90 0.0019 23.9 2.6 72 79-153 4-87 (101)
37 cd00271 Chemokine_C Chemokine_ 21.4 97 0.0021 21.9 2.5 30 76-106 22-51 (72)
38 PF12208 DUF3601: Domain of un 21.0 1.1E+02 0.0023 22.7 2.7 39 66-107 22-60 (78)
39 smart00564 PQQ beta-propeller 20.6 1.3E+02 0.0027 16.7 2.5 13 109-121 20-32 (33)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.47 E-value=4.9e-14 Score=95.37 Aligned_cols=66 Identities=33% Similarity=0.577 Sum_probs=46.1
Q ss_pred eeeecccCCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecc
Q 043931 61 IFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQ 136 (161)
Q Consensus 61 iFkq~F~~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnp 136 (161)
-|++.|...++|+|...|.|+|..+.+|+.|.||||+.+++|+|+.+..-. ++++|||..|.+|..
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK 67 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence 489999999999999999999999999999999999999999998665443 789999999999875
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.32 E-value=3.1e-12 Score=84.70 Aligned_cols=59 Identities=39% Similarity=0.708 Sum_probs=51.4
Q ss_pred CCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccc
Q 043931 68 VKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQR 137 (161)
Q Consensus 68 ~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps 137 (161)
..++|+|...|.|||+ +.+|+.|.||||+.+++|+|+.+-... .+++|||..|.+|+..
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEEC
Confidence 4689999999999999 779999999999999999997665432 2899999999998763
No 3
>PF14470 bPH_3: Bacterial PH domain
Probab=96.67 E-value=0.016 Score=40.18 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=57.9
Q ss_pred CCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceE
Q 043931 69 KEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYI 148 (161)
Q Consensus 69 ~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYI 148 (161)
.+||+.+-...|.+-...+.-.|+|+++++||-||+-.++. . .....||+++|.+|+-.... -...|
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i 68 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI 68 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence 58999999999998877889999999999999999873221 1 13489999999999987433 33568
Q ss_pred EEEEeCCc
Q 043931 149 EVYTVDGF 156 (161)
Q Consensus 149 qIvTvD~~ 156 (161)
.|.| ++.
T Consensus 69 ~i~~-~~~ 75 (96)
T PF14470_consen 69 TIET-NGE 75 (96)
T ss_pred EEEE-CCE
Confidence 8877 443
No 4
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=88.43 E-value=1.2 Score=32.05 Aligned_cols=86 Identities=27% Similarity=0.398 Sum_probs=54.0
Q ss_pred eeeecceeeeecCCCcceeeEEEeeceeEeeecCccceec-CCC---CeeeeEEEEEEecCCcceeccccccCCCCCceE
Q 043931 73 NLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYS-SSG---ELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYI 148 (161)
Q Consensus 73 kLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~-p~g---~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYI 148 (161)
|++-++.|-+=|..+-+.|+|.|++..+.|..|..-.... ... .....+--..+|+.+|+.|-..--..+ +-=|
T Consensus 1 ~i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~Al 78 (106)
T PF14844_consen 1 KILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTAL 78 (106)
T ss_dssp --SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEE
T ss_pred CEEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEE
Confidence 3456789999999999999999999999999981111100 000 001112225689999999987444333 3448
Q ss_pred EEEEeCCceeee
Q 043931 149 EVYTVDGFDFWF 160 (161)
Q Consensus 149 qIvTvD~~eFWF 160 (161)
||.+.||.-+.|
T Consensus 79 EiF~~dg~s~f~ 90 (106)
T PF14844_consen 79 EIFFSDGRSYFF 90 (106)
T ss_dssp EEEETTS-EEEE
T ss_pred EEEEcCCcEEEE
Confidence 999999987765
No 5
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=84.96 E-value=3.6 Score=27.06 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=43.3
Q ss_pred ceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecccccc----CCCCCceEEEEEeCCceeee
Q 043931 98 NKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNM----KKQSEKYIEVYTVDGFDFWF 160 (161)
Q Consensus 98 ~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~----~~p~eKYIqIvTvD~~eFWF 160 (161)
+|.++-.+.-|.+..+..+.....++-+|||..+ .|.+..+. ..+.+..++|.+.++-.|+|
T Consensus 19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~ 84 (104)
T PF00169_consen 19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLF 84 (104)
T ss_dssp EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEE
T ss_pred EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEE
Confidence 4445555555555554544445567789999999 77776666 37788899999988867766
No 6
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=83.65 E-value=0.58 Score=33.30 Aligned_cols=53 Identities=34% Similarity=0.383 Sum_probs=47.3
Q ss_pred HHHhhhhhhhhhhhhhhhhcccCCChhHHHhhhhccccchhhccCceeeeeec
Q 043931 13 RMSKLGKKANNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQL 65 (161)
Q Consensus 13 ~~~k~~rKae~~a~~i~~h~k~gp~isdt~~gklslgakil~~GG~ekiFkq~ 65 (161)
+|++++|..-...=.+.|-+++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus 6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM 58 (67)
T PF08498_consen 6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM 58 (67)
T ss_pred eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence 57788888888888899999999999999999999999999999999998643
No 7
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=82.88 E-value=0.85 Score=44.57 Aligned_cols=61 Identities=28% Similarity=0.415 Sum_probs=51.0
Q ss_pred ecccCCCCceeeecceeeeecCCC--cceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecccc
Q 043931 64 QLFSVKEGENLLKACQCYLSTTAG--PIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV 138 (161)
Q Consensus 64 q~F~~~~~EkLlka~~CYLSTsaG--PVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~ 138 (161)
-.|... |+|.-.-.|=|-|..- -..|-||+||..++|.||-+=.. .+++||.-|+.|.-..
T Consensus 14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c------------~~~~Pl~~vr~ve~~~ 76 (671)
T KOG4347|consen 14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC------------SFITPLLAVRSVERLD 76 (671)
T ss_pred ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc------------eEeeehhhhhhhhccC
Confidence 456665 9999999999999766 68999999999999999976443 4899999999887654
No 8
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=76.12 E-value=3.7 Score=37.33 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=52.0
Q ss_pred cccCCCCceeeecc--eeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccC
Q 043931 65 LFSVKEGENLLKAC--QCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMK 141 (161)
Q Consensus 65 ~F~~~~~EkLlka~--~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~ 141 (161)
.+-..|+|++.... .+=||+.-|=+ |++||++-|+..|+|-.-.| .|.||.=+|+++.-..++-
T Consensus 148 ~L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne~f------------NVSiPylqi~~i~ir~SKf 213 (339)
T PF07289_consen 148 QLKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNESF------------NVSIPYLQIKSIRIRDSKF 213 (339)
T ss_pred eEeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCccc------------cccchHhhheeeeeecccc
Confidence 35577888887765 47899999988 99999999999999976655 4999999999887765543
No 9
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=75.75 E-value=14 Score=26.43 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=35.5
Q ss_pred ceeeEEEeece--eEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceEEEEEeCC
Q 043931 89 IAGLLFISTNK--VAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDG 155 (161)
Q Consensus 89 VaG~LfiSt~k--vAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~ 155 (161)
+.|+|+|+..+ +...-+. .++.. .|.||+..|+.-..|- +.-+.==++|+-.|+
T Consensus 12 ~~G~L~l~~d~~~~~W~~~~------~~~~~-----~v~i~~~~I~~lq~Sp--~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPKA------SDGPS-----TVSIPLNDIKNLQQSP--EGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEEEETTCSSEEEEECC------SSSSS-----EEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred CCcEEEEecCCceEEEeecC------CCCCc-----eEEEEHHHhhhhccCC--CCCcceEEEEEEecC
Confidence 35999999888 7765441 12211 4999999999866532 343555678887766
No 10
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=74.52 E-value=6 Score=29.09 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=32.2
Q ss_pred cceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCc
Q 043931 88 PIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEK 146 (161)
Q Consensus 88 PVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eK 146 (161)
=-.|.||++|.|+.+--|....- .-+.|||+.|..+.-....-+.|-|
T Consensus 35 ~q~G~l~LTsHRliw~d~~~~~~-----------~s~~l~L~~i~~~e~~~gf~~sSpK 82 (89)
T PF11605_consen 35 FQNGRLYLTSHRLIWVDDSDPSK-----------HSIALPLSLISHIEYSAGFLKSSPK 82 (89)
T ss_dssp -SCEEEEEESSEEEEEESSGHCH-----------H-EEEEGGGEEEEEEE-STTSSS-E
T ss_pred ccCCEEEEEeeEEEEEcCCCCce-----------eEEEEEchHeEEEEEEccccCCCCe
Confidence 34799999999999975543321 1289999999988665555444444
No 11
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=73.93 E-value=6.1 Score=27.23 Aligned_cols=39 Identities=15% Similarity=0.415 Sum_probs=30.2
Q ss_pred cCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceec
Q 043931 84 TTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVD 135 (161)
Q Consensus 84 TsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vn 135 (161)
...| --|+|++++-|+...|+..-. +.|.||.-+|..++
T Consensus 15 gn~G-~~G~l~VTNlRiiW~s~~~~~------------~NlSIgy~~i~~i~ 53 (55)
T smart00683 15 GNNG-DLGVFFVTNLRLVWHSDTNPR------------FNISVGYLQITNVR 53 (55)
T ss_pred CCCC-CeeEEEEEeeEEEEEeCCCCc------------eEEEEcceeEEEEE
Confidence 3455 459999999999999987544 45888888887764
No 12
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=73.21 E-value=17 Score=22.96 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=26.9
Q ss_pred eEEEEEEecCCcceeccccccC-CCCCceEEEEEeCCceeee
Q 043931 120 VHYKVLIPLSKIKRVDQRVNMK-KQSEKYIEVYTVDGFDFWF 160 (161)
Q Consensus 120 ~yYKVvIPL~kik~vnps~n~~-~p~eKYIqIvTvD~~eFWF 160 (161)
....-.|||..+ .+....+.. .+..-.+.|.+-++..+.|
T Consensus 42 ~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f 82 (102)
T smart00233 42 YKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLL 82 (102)
T ss_pred CCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEE
Confidence 446678999999 554444432 3456778888877767776
No 13
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=68.24 E-value=2.9 Score=40.23 Aligned_cols=51 Identities=25% Similarity=0.599 Sum_probs=40.2
Q ss_pred hhcccCCChhHHHhh--hhccccchhhccCceeeeeecccCCCCceeeecceeeee
Q 043931 30 EHVRLAPKITETVKG--KLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLS 83 (161)
Q Consensus 30 ~h~k~gp~isdt~~g--klslgakil~~GG~ekiFkq~F~~~~~EkLlka~~CYLS 83 (161)
+.+|.-|+++....| +|..|||.|-|||+..|=|-.| ||--|.-.++=+|-
T Consensus 345 Qk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F---PGG~liGcSaGFlN 397 (621)
T KOG2415|consen 345 QKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF---PGGALIGCSAGFLN 397 (621)
T ss_pred HHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc---CCceEeeccccccc
Confidence 456667999999987 7999999999999999876655 67667666665553
No 14
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.87 E-value=6.5 Score=38.75 Aligned_cols=64 Identities=25% Similarity=0.475 Sum_probs=47.4
Q ss_pred eeecccCCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecccc
Q 043931 62 FKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV 138 (161)
Q Consensus 62 Fkq~F~~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~ 138 (161)
..--|...|||.+..-- |..-=.||+.|+|.||+-|+=|-|.-. +.+|-+-|||.-|.+|+--.
T Consensus 30 ~~~~~~~L~GE~i~~~~--y~c~f~G~~~g~l~lsNyRl~fks~~t-----------~~~~~~~VPLg~Ie~vek~~ 93 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK--YICPFLGAVDGTLALSNYRLYFKSKET-----------DPPFVLDVPLGVIERVEKRG 93 (717)
T ss_pred ccCcccccCCcccccce--ecccccccccceEEeeeeEEEEEeccC-----------CCceeEeechhhhhhhhhcC
Confidence 45567888999884322 555556899999999999999987532 22577889999888887543
No 15
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=61.17 E-value=20 Score=26.54 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=23.8
Q ss_pred EEEEEecCCcceeccccccCCCCCce-EEEEEeCC
Q 043931 122 YKVLIPLSKIKRVDQRVNMKKQSEKY-IEVYTVDG 155 (161)
Q Consensus 122 YKVvIPL~kik~vnps~n~~~p~eKY-IqIvTvD~ 155 (161)
-+=.|||..+++|....+.... .+| +||||-|.
T Consensus 43 ~~g~I~L~~i~~ve~v~~~~~~-~~~~fqivt~~r 76 (98)
T cd01244 43 KSALIKLAAIKGTEPLSDKSFV-NVDIITIVCEDD 76 (98)
T ss_pred eeeeEEccceEEEEEcCCcccC-CCceEEEEeCCC
Confidence 3457999999999876654332 345 89999774
No 16
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=58.41 E-value=44 Score=21.07 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=38.1
Q ss_pred CcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceEEEEEeC--Cceeee
Q 043931 87 GPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVD--GFDFWF 160 (161)
Q Consensus 87 GPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD--~~eFWF 160 (161)
..-...++|+...+.++++.+-..... -++||..+. +....... -...-++|++.+ +..++|
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~----------~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~~~~ 81 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP----------GSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRVFVF 81 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC----------CEEEccceE-EEECCCCC-CCCceEEEECCCCCcEEEEE
Confidence 344445666666777766665433211 568999888 76654432 234678888776 666665
No 17
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=54.61 E-value=51 Score=20.58 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=32.9
Q ss_pred EEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceEEEEEeCCceeee
Q 043931 93 LFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWF 160 (161)
Q Consensus 93 LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWF 160 (161)
+++....+.+|++.+-.. ....+-+|||.. -.|....+.. ..+..++|++.++..+.|
T Consensus 21 ~~L~~~~l~~~~~~~~~~--------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~ 78 (96)
T cd00821 21 FVLFNDLLLYYKKKSSKK--------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLL 78 (96)
T ss_pred EEEECCEEEEEECCCCCc--------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEE
Confidence 344455556665544321 223456788888 3343333322 356888888887777776
No 18
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=54.04 E-value=19 Score=34.75 Aligned_cols=59 Identities=27% Similarity=0.426 Sum_probs=45.6
Q ss_pred CCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceecccc
Q 043931 68 VKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRV 138 (161)
Q Consensus 68 ~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~ 138 (161)
+.++|+|+..+.|+|.-+- +.-|=+|||...++|-|.- ..|. -|||||++.|..+....
T Consensus 117 ~~~~~~l~~~~~cal~rei-llQGrmyis~~~icF~s~i----------~gw~-~~~vIpf~eI~~ikk~~ 175 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREI-LLQGRMYISEEHICFNSNI----------FGWE-TKVVIPFDEITLIKKTK 175 (590)
T ss_pred CCCcceeeeecchhhcccc-ccccccccccceeeecccc----------cCcc-ceeEEeeeeeeeeehhh
Confidence 7789999999999998554 4568999999988886642 2233 67999999887776644
No 19
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=53.96 E-value=19 Score=30.47 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=31.5
Q ss_pred eeeeEEEEEEecCCcceeccccccCCCCCceEEEEEeCCcee
Q 043931 117 LIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDF 158 (161)
Q Consensus 117 ~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eF 158 (161)
..+..|.+.|||..|+++.-+.... .-.||.++|-||.-|
T Consensus 107 ~~~~~~aFsv~lsdl~Si~~~~p~~--G~~~lv~~~kdG~~~ 146 (213)
T PF12068_consen 107 SSRSSYAFSVPLSDLKSIRVSKPSL--GWWYLVFILKDGTSL 146 (213)
T ss_pred CCCcceEEEEEhhheeeEEecCCCC--CceEEEEEecCCCcc
Confidence 3467889999999999998843322 668999999999653
No 20
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=52.91 E-value=14 Score=26.06 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.6
Q ss_pred eeeEEEEEEecCCcceeccccccC
Q 043931 118 IRVHYKVLIPLSKIKRVDQRVNMK 141 (161)
Q Consensus 118 ~~~yYKVvIPL~kik~vnps~n~~ 141 (161)
.|..+++.||+++|..|....+..
T Consensus 13 ~~~~~~~~Ip~~~I~~v~~~~~~~ 36 (100)
T PF10882_consen 13 RWPFGKITIPLAEIESVELVDDLP 36 (100)
T ss_pred EEccccEEEEHHHcEEEEeccccC
Confidence 477889999999999999877765
No 21
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.24 E-value=12 Score=32.18 Aligned_cols=63 Identities=30% Similarity=0.474 Sum_probs=43.1
Q ss_pred hhhhh---hhhhhhhhhhcccCCChhHHHhhhhccccchhhccCceeeeeecccCCCCceeeecceeeeecCCCcceee
Q 043931 17 LGKKA---NNFATGVKEHVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGL 92 (161)
Q Consensus 17 ~~rKa---e~~a~~i~~h~k~gp~isdt~~gklslgakil~~GG~ekiFkq~F~~~~~EkLlka~~CYLSTsaGPVaG~ 92 (161)
|.+++ +.+|..+.+|+.+- +++-+.--++.+...- +|+ .++||...++.|||.+. =.|-|.|.
T Consensus 49 Wn~~~~~~~~~a~~Ls~~l~l~--i~~p~~~~i~~~~~~~-~~~-~~v~R~i~Gv~pGE~I~---------VNGiVIG~ 114 (215)
T PF09890_consen 49 WNKKAEEVEPIAEKLSELLGLK--IVRPVENPISSGENCW-EGK-GRVFRKISGVSPGENIF---------VNGIVIGR 114 (215)
T ss_pred ccccccchHHHHHHHHHHhCCC--ccCcccccccCccccc-cCC-ceEEEEEeccCCCCCEE---------EeeEEEEE
Confidence 55666 89999999998885 2222333334443332 333 78999999999999876 36777776
No 22
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=44.86 E-value=12 Score=32.98 Aligned_cols=38 Identities=26% Similarity=0.612 Sum_probs=26.6
Q ss_pred CcceeeEEEeeceeEeeecCcc-ceecCCCCeeeeEEEEEEecCCcceec
Q 043931 87 GPIAGLLFISTNKVAFCSERSL-KFYSSSGELIRVHYKVLIPLSKIKRVD 135 (161)
Q Consensus 87 GPVaG~LfiSt~kvAFcSdrpl-~~~~p~g~~~~~yYKVvIPL~kik~vn 135 (161)
|=--|+|||++.||-|-|+.+- .|.+ .++|+.-|+.++
T Consensus 45 g~kkGtlyLTs~RiIFis~~~~D~fks-----------F~MPf~~mkd~k 83 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKPKDAFKS-----------FMMPFNLMKDVK 83 (261)
T ss_pred cceeeeEEeecceEEEecCCCCcchhh-----------hcchhhhhhhce
Confidence 3456999999999999998752 2222 466766666554
No 23
>PF01845 CcdB: CcdB protein; InterPro: IPR002712 CcdB protein is a topoisomerase poison from Escherichia coli []. It is responsible for killing plasmid-free segregants, and interferes with the activity of DNA gyrase. It acts to inhibit partitioning of the chromosomal DNA.; GO: 0008657 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity, 0006276 plasmid maintenance; PDB: 2VUB_G 1VUB_D 3VUB_A 1X75_C 3HPW_B 4VUB_A 4ELZ_D 2KMT_B 4ELY_C 3JRZ_A ....
Probab=44.64 E-value=28 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=23.9
Q ss_pred EEEEEEecCCcceec-cccccCCCCCceEEEEEeCCceeeeC
Q 043931 121 HYKVLIPLSKIKRVD-QRVNMKKQSEKYIEVYTVDGFDFWFM 161 (161)
Q Consensus 121 yYKVvIPL~kik~vn-ps~n~~~p~eKYIqIvTvD~~eFWFM 161 (161)
...|||||-...... +...+-|| ++++||.+|-.|
T Consensus 30 ~tRvVvPL~~~~~~~~~~~~~L~P------~~~i~g~~~vl~ 65 (102)
T PF01845_consen 30 NTRVVVPLLPLSNLPGKPPRRLNP------VFEIEGEDYVLM 65 (102)
T ss_dssp SEEEEEEEEEGGGTSSTS-TTTS-------EEEETTEEEEE-
T ss_pred CcEEEEecCchhhcCcccCCceee------EEEECCEEEEEE
Confidence 367999998887775 44444454 788999888654
No 24
>PRK13708 plasmid maintenance protein CcdB; Provisional
Probab=43.78 E-value=29 Score=26.47 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=24.8
Q ss_pred EEEEEecCCcceecccc-ccCCCCCceEEEEEeCCceeeeC
Q 043931 122 YKVLIPLSKIKRVDQRV-NMKKQSEKYIEVYTVDGFDFWFM 161 (161)
Q Consensus 122 YKVvIPL~kik~vnps~-n~~~p~eKYIqIvTvD~~eFWFM 161 (161)
-+|||||-......+.. .+-|| ++++||.+|-.|
T Consensus 30 tRvViPL~~~~~~~~~~~~rL~P------~~~I~g~~~vl~ 64 (101)
T PRK13708 30 RRMVIPLASARLLSDKVSRELYP------VVHIGDESYRLM 64 (101)
T ss_pred ceEEEeCccHHHCCCCcCCCcCc------eEEECCeEEEEE
Confidence 46999999888777644 34444 788999988654
No 25
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.70 E-value=58 Score=25.71 Aligned_cols=38 Identities=26% Similarity=0.211 Sum_probs=26.1
Q ss_pred eeeEEEEEEecCCcceecccccc---CCCCCceEEEEEeCCce
Q 043931 118 IRVHYKVLIPLSKIKRVDQRVNM---KKQSEKYIEVYTVDGFD 157 (161)
Q Consensus 118 ~~~yYKVvIPL~kik~vnps~n~---~~p~eKYIqIvTvD~~e 157 (161)
..-||| .|||..|-.|.++.+. .....-..||+| .+--
T Consensus 36 ~skyyK-eIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~v 76 (117)
T cd01239 36 GSRYYK-EIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNV 76 (117)
T ss_pred CCeeeE-EeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEE
Confidence 344677 5899999999765443 234677899999 4433
No 26
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=31.54 E-value=37 Score=26.14 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=13.6
Q ss_pred eeEEEeeceeEeeec
Q 043931 91 GLLFISTNKVAFCSE 105 (161)
Q Consensus 91 G~LfiSt~kvAFcSd 105 (161)
|.|||.+.+|.+-|+
T Consensus 1 g~L~Vt~~~l~w~~~ 15 (135)
T PF03517_consen 1 GTLYVTESRLIWFSN 15 (135)
T ss_dssp EEEEEETTEEEEEET
T ss_pred CEEEEecCEEEEECC
Confidence 899999999999883
No 27
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=20 Score=28.76 Aligned_cols=36 Identities=22% Similarity=0.566 Sum_probs=30.2
Q ss_pred hhhhhhhhhhhhhhcccCCCh-------hHHHhhhhccccchhhc
Q 043931 18 GKKANNFATGVKEHVRLAPKI-------TETVKGKLSLGAKIIQV 55 (161)
Q Consensus 18 ~rKae~~a~~i~~h~k~gp~i-------sdt~~gklslgakil~~ 55 (161)
+.=|++++.+|-+||+.|..+ .| .||+||--|-+.+
T Consensus 36 SEIa~~fVkdI~d~L~vG~eV~vKVl~ide--~GKisLSIr~~~e 78 (129)
T COG1098 36 SEIADGFVKDIHDHLKVGQEVKVKVLDIDE--NGKISLSIRKLEE 78 (129)
T ss_pred hHhhhhhHHhHHHHhcCCCEEEEEEEeecc--CCCcceehHHhhh
Confidence 456899999999999999754 44 8999999988876
No 28
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.66 E-value=69 Score=30.16 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=39.2
Q ss_pred EeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceEEEE
Q 043931 101 AFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVY 151 (161)
Q Consensus 101 AFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIv 151 (161)
+|-+||-|.|.+|+|+..-+.|..--++.-+..+.+...+ .++=-|||.
T Consensus 245 ~fd~dr~i~FiPPdGeF~Lm~Y~ls~~vkPli~~~~~~~~--~~~~ri~i~ 293 (424)
T KOG0937|consen 245 RFDNDRTISFIPPDGEFELMRYRLSTHVKPLIWFYQLIEE--HSRSRIEVM 293 (424)
T ss_pred hccCCceEEecCCCCceEEEEEEecCCCCCeEEeeeeeee--ccceeEEEE
Confidence 6889999999999999999999998888888888776655 334445554
No 29
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=30.37 E-value=89 Score=21.41 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=5.6
Q ss_pred eeEeeecCcc
Q 043931 99 KVAFCSERSL 108 (161)
Q Consensus 99 kvAFcSdrpl 108 (161)
||||+|+..-
T Consensus 1 kIAi~~~~~~ 10 (102)
T cd00562 1 KIAVASSDGG 10 (102)
T ss_pred CEEEEcCCCC
Confidence 4566665554
No 30
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=28.10 E-value=1.3e+02 Score=22.95 Aligned_cols=58 Identities=14% Similarity=0.288 Sum_probs=43.8
Q ss_pred ccCCChhHHHhhhhccccchhhccC-ceeeeeecccCCCCceeeecceeeeecCCCcceeeEEEee
Q 043931 33 RLAPKITETVKGKLSLGAKIIQVGG-VERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFIST 97 (161)
Q Consensus 33 k~gp~isdt~~gklslgakil~~GG-~ekiFkq~F~~~~~EkLlka~~CYLSTsaGPVaG~LfiSt 97 (161)
+.|..+++. +-++|+++. -+..+...+...++-|++|++-.++--..|=+.|+|=|-.
T Consensus 46 ~vGdp~t~~-------~l~~l~~~~~~~~~~~nY~~~~~~Gk~lrSsT~~Ird~~g~~iG~LCIN~ 104 (118)
T PF08348_consen 46 KVGDPITDL-------ALELLKEKQYEEDYIINYKTKTKDGKILRSSTFFIRDENGKLIGALCINF 104 (118)
T ss_pred ccCCchhHH-------HHHHHhccccCCCccccccccCCCCCEEEEEEEEEECCCCCEEEEEEEEe
Confidence 455555554 446666665 3566677778888889999999999999999999987753
No 31
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=27.70 E-value=89 Score=22.67 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=22.0
Q ss_pred EEEecCCcceeccccccCCCC---CceEEEEEeCCc
Q 043931 124 VLIPLSKIKRVDQRVNMKKQS---EKYIEVYTVDGF 156 (161)
Q Consensus 124 VvIPL~kik~vnps~n~~~p~---eKYIqIvTvD~~ 156 (161)
..|||..|..|.= +.|. .=||+++..++-
T Consensus 27 ~~ipl~~i~gV~~----~~pg~~~~G~Lrf~~~~g~ 58 (94)
T PF14472_consen 27 KTIPLSAISGVEW----KPPGGLTNGYLRFVLRGGA 58 (94)
T ss_pred EEEEHHHcceEEE----EcCCceeEEEEEEEECCcC
Confidence 5799999999986 4444 348999988754
No 32
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=26.47 E-value=1.3e+02 Score=20.62 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=5.0
Q ss_pred eeEeeecCcc
Q 043931 99 KVAFCSERSL 108 (161)
Q Consensus 99 kvAFcSdrpl 108 (161)
|||+.||..-
T Consensus 2 ~IAv~~~~~~ 11 (103)
T cd00851 2 KIAIPVSGNG 11 (103)
T ss_pred EEEEEecCCC
Confidence 4555554443
No 33
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=26.31 E-value=42 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=9.0
Q ss_pred eceeEeeecCc
Q 043931 97 TNKVAFCSERS 107 (161)
Q Consensus 97 t~kvAFcSdrp 107 (161)
.++|+|+|+|.
T Consensus 20 Gk~i~f~s~~~ 30 (39)
T PF07676_consen 20 GKYIYFTSNRN 30 (39)
T ss_dssp SSEEEEEEECT
T ss_pred CCEEEEEecCC
Confidence 36899999986
No 34
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=24.84 E-value=35 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=16.6
Q ss_pred hhhhhhhhhhhhhhhcccC
Q 043931 17 LGKKANNFATGVKEHVRLA 35 (161)
Q Consensus 17 ~~rKae~~a~~i~~h~k~g 35 (161)
.-++||.|..++.+++|+-
T Consensus 5 vd~rAe~FI~~f~~qlrlq 23 (38)
T PF05553_consen 5 VDRRAEEFIAKFREQLRLQ 23 (38)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999983
No 35
>cd00274 Chemokine_CX3C Chemokine_CX3C: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteines; differ structurally from the other subgroups in that they are attached to a membrane-spanning domain via a mucin-like stalk and can be proteolytically cleaved to a freely diffusible form; chemotatic for T cells, monocytes, and natural killer cells; function as monomers and are found only in vertebrates and a few viruses; currently only fractalkine (sometimes called neurotactin) has been identified as a member of this subfamily; the primary source of fractalkine is neurons, and they exhibit cell adhesion and chemoattractive properties in the central nervous system. See CDs: Chemokine (cd00169) for the general alignment of chemokines, or Chemokine_CXC (cd00273), Chemokine_CC (cd00272), and Chemokine_C (cd00271) for the additional chemokine subgroups.
Probab=22.20 E-value=1.1e+02 Score=22.28 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=21.1
Q ss_pred eeeecCCC-cceeeEEEeeceeEeeecC
Q 043931 80 CYLSTTAG-PIAGLLFISTNKVAFCSER 106 (161)
Q Consensus 80 CYLSTsaG-PVaG~LfiSt~kvAFcSdr 106 (161)
+|..|+.| |+.|++|+.-+.--+|.|-
T Consensus 26 sY~~Ts~~C~~~AVIF~Tkkgr~iCAdP 53 (76)
T cd00274 26 HYQQNQESCGKRAIILETRQHRLFCADP 53 (76)
T ss_pred EEEECCCCCCCCeEEEEECCCCEEeCCC
Confidence 46667544 9999999999887888764
No 36
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=22.11 E-value=90 Score=23.90 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=48.2
Q ss_pred eeeeecCCCcceee--EEEeeceeEeeecCcccee--cCCCCeeeeEEEEEEecCCccee--------ccccccCCCCCc
Q 043931 79 QCYLSTTAGPIAGL--LFISTNKVAFCSERSLKFY--SSSGELIRVHYKVLIPLSKIKRV--------DQRVNMKKQSEK 146 (161)
Q Consensus 79 ~CYLSTsaGPVaG~--LfiSt~kvAFcSdrpl~~~--~p~g~~~~~yYKVvIPL~kik~v--------nps~n~~~p~eK 146 (161)
.|=+|.++|+|.|- |||.-+|| .-|--+.|. .++|+..|--+=-+-+ +.++.+ -...+...|-+=
T Consensus 4 I~r~s~~s~sv~GG~Ev~Ll~~k~--~kDikV~F~E~~~dG~~~WE~~a~f~~-~~~hQ~aIvf~tPpY~~~~I~~pV~V 80 (101)
T cd01178 4 IEKKSLNSCSVNGGEELFLTGKNF--LKDSKVVFQEKGQDGEAQWEAEATIDK-EKSHQNHLVVEVPPYHNKHVAAPVQV 80 (101)
T ss_pred eEEeccCceeecCCCEEEEEehhc--CCCCEEEEEEeCCCCccceEEEEEeCh-HhceeeeEEEecCCCCCCCcCCceEE
Confidence 58899999999995 89999996 558777887 4788888764433322 222211 012345667777
Q ss_pred eEEEEEe
Q 043931 147 YIEVYTV 153 (161)
Q Consensus 147 YIqIvTv 153 (161)
+||+++-
T Consensus 81 ~~~l~~~ 87 (101)
T cd01178 81 QFYVVNG 87 (101)
T ss_pred EEEEEcC
Confidence 7777764
No 37
>cd00271 Chemokine_C Chemokine_C, C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two other subclasses each have a single known member: fractalkine for the CX3C (cd00274) class and lymphotactin for the C (cd00271) class. Chemokine_Cs differ structurally since they contain only one of the two disulfide bridges that are conserved in all other chemokines and they possess a unique C-terminal extension, which is required for biological activity and thought to play a role in receptor binding. Lymphotactin, a mediator of mucosal immunity, has been found to chemoattract neutrophils and B cells through the XCR1 receptor and thought to be a factor in acute allograft rejection and inflammatory bowel disease.
Probab=21.38 E-value=97 Score=21.93 Aligned_cols=30 Identities=17% Similarity=0.545 Sum_probs=23.3
Q ss_pred ecceeeeecCCCcceeeEEEeeceeEeeecC
Q 043931 76 KACQCYLSTTAGPIAGLLFISTNKVAFCSER 106 (161)
Q Consensus 76 ka~~CYLSTsaGPVaG~LfiSt~kvAFcSdr 106 (161)
+-..+|--| .+|+.+++|..-+.--+|+|-
T Consensus 22 ~~I~sY~~q-~~~~~AVIF~Tkkgr~iCadP 51 (72)
T cd00271 22 QKIKTYTIK-EGSVRAVIFITKRGLKICADP 51 (72)
T ss_pred hHccEEEEC-CCCCCeEEEEecCCCEEeCCC
Confidence 455677776 479999999998877888874
No 38
>PF12208 DUF3601: Domain of unknown function (DUF3601); InterPro: IPR022020 This domain family is found in bacteria, and is approximately 80 amino acids in length. ; PDB: 3G1J_B.
Probab=20.98 E-value=1.1e+02 Score=22.71 Aligned_cols=39 Identities=36% Similarity=0.510 Sum_probs=26.2
Q ss_pred ccCCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCc
Q 043931 66 FSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERS 107 (161)
Q Consensus 66 F~~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrp 107 (161)
|....||++.=+.+=||---.|- +||||++|-..-+|||
T Consensus 22 ~~~~~GE~~~fa~~~f~pY~~g~---tL~is~ek~I~L~~~~ 60 (78)
T PF12208_consen 22 FTHKAGEIWYFACVYFLPYEDGY---TLYISSEKTIRLQDRS 60 (78)
T ss_dssp -EE-TT-EEEEEEEEEETTTTEE---EEEETEEEEEEEE-ST
T ss_pred cEeCCCCEEEEeeccCceEcCce---EEEEecCceEEEecCc
Confidence 45678999997777777655553 7999999966666665
No 39
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=20.56 E-value=1.3e+02 Score=16.66 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=8.3
Q ss_pred ceecCCCCeeeeE
Q 043931 109 KFYSSSGELIRVH 121 (161)
Q Consensus 109 ~~~~p~g~~~~~y 121 (161)
++..-+|+..|.+
T Consensus 20 a~d~~~G~~~W~~ 32 (33)
T smart00564 20 ALDAKTGEILWTY 32 (33)
T ss_pred EEEcccCcEEEEc
Confidence 4455578887763
Done!