Query 043931
Match_columns 161
No_of_seqs 106 out of 129
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 95.0 0.072 2.5E-06 48.7 8.1 80 66-156 7-90 (528)
2 1lw3_A Myotubularin-related pr 93.6 0.24 8.3E-06 46.6 8.6 99 46-156 60-162 (657)
3 2hth_B Vacuolar protein sortin 90.1 0.42 1.4E-05 36.4 4.9 51 86-148 35-85 (140)
4 2cay_A VPS36 PH domain, vacuol 84.8 0.88 3E-05 34.9 3.9 48 86-144 48-95 (145)
5 2yf0_A Myotubularin-related pr 79.7 3.9 0.00013 37.3 6.7 59 82-156 18-76 (512)
6 4ag4_A Epithelial discoidin do 56.1 8.8 0.0003 33.2 3.6 59 72-130 250-315 (351)
7 2d9z_A Protein kinase C, NU ty 53.2 9.3 0.00032 29.4 2.9 41 116-158 42-86 (129)
8 1zyi_A Methylosome subunit pic 48.9 18 0.00061 28.6 4.0 29 78-107 32-60 (171)
9 2coa_A Protein kinase C, D2 ty 47.8 15 0.00051 28.0 3.3 40 117-158 43-86 (125)
10 1pfj_A TFIIH basal transcripti 47.6 53 0.0018 24.3 6.2 55 91-159 22-76 (108)
11 3tfm_A Myosin X; split PH doma 36.0 1.5E+02 0.0051 22.9 7.6 93 54-160 29-135 (228)
12 2kq8_A Cell WALL hydrolase; GF 35.6 6 0.0002 25.8 -0.6 23 31-53 13-35 (70)
13 2aze_B Transcription factor E2 34.9 15 0.00051 26.8 1.4 15 76-90 85-99 (106)
14 1t77_A Lipopolysaccharide-resp 32.6 66 0.0023 28.7 5.5 76 77-160 6-90 (414)
15 3vub_A CCDB; topoisomerase poi 27.8 59 0.002 23.5 3.6 36 121-161 29-64 (101)
16 2adz_A Alpha-1-syntrophin; pro 26.5 58 0.002 25.9 3.7 35 123-158 120-154 (178)
17 2kt8_A Probable surface protei 25.5 8.6 0.00029 25.7 -1.2 24 30-53 13-36 (76)
18 1i31_A Clathrin coat assembly 23.8 33 0.0011 28.4 1.8 25 101-125 135-159 (314)
19 2krs_A Probable enterotoxin; a 23.4 11 0.00036 24.9 -1.0 57 31-109 12-68 (74)
20 1v89_A Hypothetical protein KI 23.1 1.6E+02 0.0054 19.0 5.4 28 125-152 50-77 (118)
21 3g1j_A Integron cassette prote 22.6 52 0.0018 24.1 2.5 35 66-105 32-66 (93)
22 2f1e_A Protein APAG; APAG prot 21.9 1.4E+02 0.0047 22.2 4.8 28 68-95 76-103 (127)
23 1eaz_A Tandem PH domain contai 21.3 73 0.0025 21.1 2.9 35 125-160 56-91 (125)
24 1xvs_A Protein APAG; MCSG APC2 20.7 1.4E+02 0.0047 22.2 4.6 45 68-131 75-119 (126)
25 2kmt_A CCDB; toxin; NMR {Vibri 20.1 62 0.0021 23.2 2.5 35 122-161 34-68 (105)
26 1xq4_A Protein APAG; all beta 20.1 1.3E+02 0.0044 22.9 4.4 28 68-95 80-107 (139)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=94.97 E-value=0.072 Score=48.75 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=53.2
Q ss_pred ccCCCCceeeeccee--eeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCC
Q 043931 66 FSVKEGENLLKACQC--YLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQ 143 (161)
Q Consensus 66 F~~~~~EkLlka~~C--YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p 143 (161)
|...|||.++..-.- |++.-.|++.|+|||++.|+.|.+... +. .+.+-|||..|.+|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence 567899999865211 556567999999999999999999531 11 24578999888777653221111
Q ss_pred --CCceEEEEEeCCc
Q 043931 144 --SEKYIEVYTVDGF 156 (161)
Q Consensus 144 --~eKYIqIvTvD~~ 156 (161)
.--.|+|..-|-.
T Consensus 76 ~~~~~~l~I~CKDfr 90 (528)
T 1zsq_A 76 GENSYGLETVCKDIR 90 (528)
T ss_dssp STTCSEEEEEETTTE
T ss_pred CCCCceEEEEccCCe
Confidence 1125888777643
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=93.59 E-value=0.24 Score=46.65 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=53.9
Q ss_pred hccccchhhccCceeeeeecccCCCCceeeecce-e-eeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEE
Q 043931 46 LSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQ-C-YLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYK 123 (161)
Q Consensus 46 lslgakil~~GG~ekiFkq~F~~~~~EkLlka~~-C-YLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYK 123 (161)
+++.-++|+.|-.. -=.--|...|||.+...-. . |+..-.|++.|+|||++.|+.|.+... +. .+.
T Consensus 60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~ 127 (657)
T 1lw3_A 60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV 127 (657)
T ss_dssp ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence 44444555554321 1112377899999995421 1 455456899999999999999998521 11 245
Q ss_pred EEEecCCcceeccccccCCCC--CceEEEEEeCCc
Q 043931 124 VLIPLSKIKRVDQRVNMKKQS--EKYIEVYTVDGF 156 (161)
Q Consensus 124 VvIPL~kik~vnps~n~~~p~--eKYIqIvTvD~~ 156 (161)
+-|||..|..|.......... --.|+|..-|-.
T Consensus 128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDfR 162 (657)
T 1lw3_A 128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDIR 162 (657)
T ss_dssp EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTTE
T ss_pred EEecccceEEEEecCCCcccCCCCceEEEEecCCc
Confidence 689998888887533211111 124888777643
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=90.09 E-value=0.42 Score=36.36 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=37.3
Q ss_pred CCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceE
Q 043931 86 AGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYI 148 (161)
Q Consensus 86 aGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYI 148 (161)
+.--.|.||++|.||.|-.+.. . . .-+.|||..|+.+...+..-..+-|++
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-~------~-----~s~~lpl~~v~~~e~~~~~f~~s~Ki~ 85 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-H------E-----CCMAILLSQIVFIEEQAAGIGKSAKIV 85 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-C------S-----CCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-C------c-----eEEEEEhHHeeeeeeeccccccCceEE
Confidence 4668899999999999965532 1 1 337889999888888776665555554
No 4
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=84.78 E-value=0.88 Score=34.91 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCC
Q 043931 86 AGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQS 144 (161)
Q Consensus 86 aGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~ 144 (161)
.+--.|.|||+|.||-|-.+.+-.. .-+.+||..|+.+...+..-.++
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~~~~-----------~SfslPL~~v~~~e~~~~~fg~s 95 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAKPTQ-----------NSLGLELDDLAYVNYSSGFLTRS 95 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSCHHH-----------HCEEEEGGGEEEEEEECSSSSSS
T ss_pred cCCCccEEEEEcCeEEEecCCCCcc-----------eEEEeEhHheeeeeEEcCccccC
Confidence 5778999999999999975543111 12788888888888776665554
No 5
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=79.67 E-value=3.9 Score=37.29 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=35.8
Q ss_pred eecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceEEEEEeCCc
Q 043931 82 LSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGF 156 (161)
Q Consensus 82 LSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~ 156 (161)
++.+.+|+.|+|||++.|+.|.+|.. +. +.||+..|.+|.-.... .....|+|..-|-.
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~e------~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr 76 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------KE------TWILHHHIASVEKLALT--TSGCPLVIQCKNFR 76 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------CE------EEEEGGGEEEEEECCCB--TTBEEEEEEETTSC
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------Cc------eEecccceeEEEEecCC--CCCceEEEEecCCc
Confidence 35567999999999999999999532 22 45777777777542211 12245777776643
No 6
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=56.08 E-value=8.8 Score=33.19 Aligned_cols=59 Identities=10% Similarity=-0.008 Sum_probs=45.9
Q ss_pred ceeeecceeeeecCCCcceeeEEEeeceeEeeec-------CccceecCCCCeeeeEEEEEEecCC
Q 043931 72 ENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSE-------RSLKFYSSSGELIRVHYKVLIPLSK 130 (161)
Q Consensus 72 EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSd-------rpl~~~~p~g~~~~~yYKVvIPL~k 130 (161)
+++++..+|.|-+..=.--|+-.-|..++=|+++ .|+.|+.+.-...++-.-|.|||++
T Consensus 250 d~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 250 DRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred CcEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 5679999999999988888888889999999988 3888876433333444669999973
No 7
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.20 E-value=9.3 Score=29.35 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=29.2
Q ss_pred CeeeeEEEEEEecCCcceeccccccCC--CCC--ceEEEEEeCCcee
Q 043931 116 ELIRVHYKVLIPLSKIKRVDQRVNMKK--QSE--KYIEVYTVDGFDF 158 (161)
Q Consensus 116 ~~~~~yYKVvIPL~kik~vnps~n~~~--p~e--KYIqIvTvD~~eF 158 (161)
+...-|||. |||..|-.|.|..+-.. +.. -+.||+| .+-.|
T Consensus 42 e~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y 86 (129)
T 2d9z_A 42 ESGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVY 86 (129)
T ss_dssp SSCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEE
T ss_pred CCCCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEE
Confidence 344557887 99999999999876653 222 6799998 55554
No 8
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=48.90 E-value=18 Score=28.59 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=22.2
Q ss_pred ceeeeecCCCcceeeEEEeeceeEeeecCc
Q 043931 78 CQCYLSTTAGPIAGLLFISTNKVAFCSERS 107 (161)
Q Consensus 78 ~~CYLSTsaGPVaG~LfiSt~kvAFcSdrp 107 (161)
-++||-.. .+-.|+|||++.||.+-|+..
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~~ 60 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGSG 60 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETTT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCCC
Confidence 46777652 334699999999999998853
No 9
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=47.82 E-value=15 Score=28.02 Aligned_cols=40 Identities=28% Similarity=0.367 Sum_probs=28.4
Q ss_pred eeeeEEEEEEecCCcceeccccccCC--C--CCceEEEEEeCCcee
Q 043931 117 LIRVHYKVLIPLSKIKRVDQRVNMKK--Q--SEKYIEVYTVDGFDF 158 (161)
Q Consensus 117 ~~~~yYKVvIPL~kik~vnps~n~~~--p--~eKYIqIvTvD~~eF 158 (161)
...-|||. |||..|-.|.+..+... + ..-+.||+| .+-.|
T Consensus 43 ~~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~y 86 (125)
T 2coa_A 43 TTNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATY 86 (125)
T ss_dssp SCSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCC
T ss_pred CCCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEE
Confidence 44557887 99999999999876553 2 226789988 44443
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=47.61 E-value=53 Score=24.32 Aligned_cols=55 Identities=13% Similarity=0.208 Sum_probs=35.6
Q ss_pred eeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCcceeccccccCCCCCceEEEEEeCCceee
Q 043931 91 GLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFW 159 (161)
Q Consensus 91 G~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFW 159 (161)
|+||++..+|+...+.. +. --|.++..+|+.-..| ...-+.==+||+-.|+-.|=
T Consensus 22 GtL~l~~d~i~W~p~~~-------~~-----~~vs~~~~~I~~qq~S--P~~k~KVqLqi~l~~~~~~~ 76 (108)
T 1pfj_A 22 GALYLMAERIAWAPEGK-------DR-----FTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTN 76 (108)
T ss_dssp CEEEEETTEEEEECSSS-------SS-----CSEEEETTTCCCEEEC--CSSSSSCEEEEECSSSCEEE
T ss_pred ceEEEEcceEEEccCCC-------CC-----ceEEEehhhhhcceeC--CCCCccEEEEEEEeCCCceE
Confidence 99999999999876443 11 1277789999864443 23334556777766554443
No 11
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=35.98 E-value=1.5e+02 Score=22.88 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=55.8
Q ss_pred hccCceeeeeecccCCCCceeeecceeeeecCCCc--ceeeEEEeece------------eEeeecCccceecCCCCeee
Q 043931 54 QVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGP--IAGLLFISTNK------------VAFCSERSLKFYSSSGELIR 119 (161)
Q Consensus 54 ~~GG~ekiFkq~F~~~~~EkLlka~~CYLSTsaGP--VaG~LfiSt~k------------vAFcSdrpl~~~~p~g~~~~ 119 (161)
..||.-|-+|.-+-+ +|...+.+..+.++ ..|-|+.-... .....+..|.|+....+
T Consensus 29 ~~~~~~~~w~~rw~v------l~~~~~~~~~~~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~--- 99 (228)
T 3tfm_A 29 MNGGLMNSWKRRWCV------LKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE--- 99 (228)
T ss_dssp ECCTTTCCCEEEEEE------EETTEEEEESSCCCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTC---
T ss_pred ecCcccccceEEEEE------EeCCEEEEeccCCCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCC---
Confidence 358888888655545 33334433333333 35888776543 35556888888764443
Q ss_pred eEEEEEEecCCcceeccccccCCCCCceEEEEEeCCceeee
Q 043931 120 VHYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWF 160 (161)
Q Consensus 120 ~yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWF 160 (161)
..-+=+|||..+..|.+..+. +--++|+| ++..|.|
T Consensus 100 ~~~~g~I~L~~~~~v~~~~~k----~~~F~I~t-~~r~~~l 135 (228)
T 3tfm_A 100 EKLKGTVEVRSAKEIIDNTNK----ENGIDIIM-ADRTFHL 135 (228)
T ss_dssp CSEEEEEEGGGCSEEEEETTT----TSEEEEEC-SSCEEEE
T ss_pred cceeEEEEcCCCEEeccCCCC----CcEEEEEc-CCcEEEE
Confidence 234568999999887765432 23577776 4556654
No 12
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=35.61 E-value=6 Score=25.83 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred hcccCCChhHHHhhhhccccchh
Q 043931 31 HVRLAPKITETVKGKLSLGAKII 53 (161)
Q Consensus 31 h~k~gp~isdt~~gklslgakil 53 (161)
+||.||+..-.+.|+|..|+++-
T Consensus 13 nvRsgP~~~~~ii~~l~~G~~v~ 35 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGALPQGQKVQ 35 (70)
T ss_dssp CSSSSSSSCTTSCCCCCSSSSCC
T ss_pred EEEcCCCCCCceEEEECCCCEEE
Confidence 79999999999999999999753
No 13
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=34.88 E-value=15 Score=26.77 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.6
Q ss_pred ecceeeeecCCCcce
Q 043931 76 KACQCYLSTTAGPIA 90 (161)
Q Consensus 76 ka~~CYLSTsaGPVa 90 (161)
+.|++||..+.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 589999999999984
No 14
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=32.63 E-value=66 Score=28.67 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=54.0
Q ss_pred cceeeeecCCCcceeeEEEeeceeEeeecCccc-ee--------cCCCCeeeeEEEEEEecCCcceeccccccCCCCCce
Q 043931 77 ACQCYLSTTAGPIAGLLFISTNKVAFCSERSLK-FY--------SSSGELIRVHYKVLIPLSKIKRVDQRVNMKKQSEKY 147 (161)
Q Consensus 77 a~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~-~~--------~p~g~~~~~yYKVvIPL~kik~vnps~n~~~p~eKY 147 (161)
...|.+-|..+-+.|.|.|++.++-|.-|..-. +. ...|.. ..+++++|+.|-...-..+ +-=
T Consensus 6 ~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~~i~~Rryll~--~~a 77 (414)
T 1t77_A 6 STPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLH------GKWLFTEIRSIFSRRYLLQ--NTA 77 (414)
T ss_dssp EEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTT------CEEEGGGEEEEEEEEETTE--EEE
T ss_pred EEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccccCcc------eEecchheeeeeeeeccCc--cee
Confidence 468999999999999999999999998753211 11 012222 2468899999976544433 456
Q ss_pred EEEEEeCCceeee
Q 043931 148 IEVYTVDGFDFWF 160 (161)
Q Consensus 148 IqIvTvD~~eFWF 160 (161)
|||.+.||.-+.|
T Consensus 78 lEif~~~g~s~~l 90 (414)
T 1t77_A 78 LEIFMANRVAVMF 90 (414)
T ss_dssp EEEEETTSCEEEE
T ss_pred EEEEEcCCcEEEE
Confidence 8999999877654
No 15
>3vub_A CCDB; topoisomerase poison; 1.40A {Escherichia coli} SCOP: b.34.6.1 PDB: 1x75_C* 1vub_A 2vub_A 3g7z_A 3hpw_A 4vub_A
Probab=27.83 E-value=59 Score=23.45 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=23.4
Q ss_pred EEEEEEecCCcceeccccccCCCCCceEEEEEeCCceeeeC
Q 043931 121 HYKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161 (161)
Q Consensus 121 yYKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFM 161 (161)
...|||||-......+ ++..+.-=++++||.+|-.|
T Consensus 29 ~tRvVvPL~~~~~~~~-----~~~~~L~P~~~i~G~~~vl~ 64 (101)
T 3vub_A 29 GRRMVIPLASARLLSD-----KVSRELYPVVHIGDESWRMM 64 (101)
T ss_dssp TEEEEEEEEESSSSCS-----SSCTTTSCEEEETTEEEEEC
T ss_pred CceEEEECCChhHcCc-----ccCcccceEEEECCEEEEEe
Confidence 4679999977665543 22234444788999888654
No 16
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=26.48 E-value=58 Score=25.88 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=25.5
Q ss_pred EEEEecCCcceeccccccCCCCCceEEEEEeCCcee
Q 043931 123 KVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDF 158 (161)
Q Consensus 123 KVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eF 158 (161)
.+.|||. +-.|...-...+|..+|+||.+.||-.-
T Consensus 120 ~~~IPLk-MayvtR~~~~tD~e~r~fEv~s~DG~~t 154 (178)
T 2adz_A 120 AKHVSLK-MAYVSRRCTPTDPEPRYLEICAADGQDA 154 (178)
T ss_dssp CEEEETT-TCEEEEECCSSCCSSCEEEEEETTTTEE
T ss_pred ceeecHH-HHHHHHhccCCCCCccEEEEEcCCCCee
Confidence 3779975 4445555555677999999999999653
No 17
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=25.49 E-value=8.6 Score=25.71 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred hhcccCCChhHHHhhhhccccchh
Q 043931 30 EHVRLAPKITETVKGKLSLGAKII 53 (161)
Q Consensus 30 ~h~k~gp~isdt~~gklslgakil 53 (161)
-+||.||+..-.+.|+|..|+++-
T Consensus 13 lnvR~~Ps~~~~ii~~l~~G~~v~ 36 (76)
T 2kt8_A 13 LNVREGASTSSKVIGSLSGNTKVT 36 (76)
T ss_dssp EEEESSSSTTSCEEEEECTTCEEE
T ss_pred EEEEcCCCCCChhhEEECCCCEEE
Confidence 479999999999999999998764
No 18
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=23.78 E-value=33 Score=28.45 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=19.0
Q ss_pred EeeecCccceecCCCCeeeeEEEEE
Q 043931 101 AFCSERSLKFYSSSGELIRVHYKVL 125 (161)
Q Consensus 101 AFcSdrpl~~~~p~g~~~~~yYKVv 125 (161)
.|-+||-|+|.+|+|+..=..|++.
T Consensus 135 ~f~~~r~IsFiPPDG~F~Lm~Yr~~ 159 (314)
T 1i31_A 135 KFDSERSISFIPPDGEFELMRYRTT 159 (314)
T ss_dssp ----CCCEEECCCSEEEEEEEEEEC
T ss_pred HcCCcceEEEECCCCCeEEEEEEec
Confidence 3779999999999999988888873
No 19
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=23.36 E-value=11 Score=24.92 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=36.6
Q ss_pred hcccCCChhHHHhhhhccccchhhccCceeeeeecccCCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccc
Q 043931 31 HVRLAPKITETVKGKLSLGAKIIQVGGVERIFKQLFSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLK 109 (161)
Q Consensus 31 h~k~gp~isdt~~gklslgakil~~GG~ekiFkq~F~~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~ 109 (161)
+||.||+....+.|+|..|+++--.+ +. | -=|.+... | ..=||+..-|...++.||.
T Consensus 12 nvRs~P~~~~~vi~~l~~G~~v~v~~-------~~-----~------~W~kV~~~-g---~~GwV~~~yl~~~~~~~~~ 68 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTLRNNDKVEIIK-------EV-----D------GWYEIRFN-G---KVGYASKSYITIVNEGSLE 68 (74)
T ss_dssp EEESSSSTTTCEEEEEETTCEEEEEE-------EE-----T------TEEEEEET-T---EEEEECSSSEEESSSSCCC
T ss_pred EEEcCCCCCChHHEEECCCCEEEEEE-------Ee-----C------CEEEEEEC-C---eEEEEEhHHcCCCCCccch
Confidence 79999999999999999998753222 10 1 14445443 3 2336666666666666664
No 20
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.11 E-value=1.6e+02 Score=19.04 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=11.8
Q ss_pred EEecCCcceeccccccCCCCCceEEEEE
Q 043931 125 LIPLSKIKRVDQRVNMKKQSEKYIEVYT 152 (161)
Q Consensus 125 vIPL~kik~vnps~n~~~p~eKYIqIvT 152 (161)
+|||.....+....+...+..-.++|+|
T Consensus 50 ~i~L~~~~v~~~~~~~~~~~~~~f~i~~ 77 (118)
T 1v89_A 50 CMYLPGCTIKEIATNPEEAGKFVFEIIP 77 (118)
T ss_dssp EECSTTEEEEEECCCSSCCCCCEEEEEE
T ss_pred EEECCCCEEEEcCcCcccCCcceEEEEC
Confidence 3555544333222222233334566666
No 21
>3g1j_A Integron cassette protein; novel, oyster POND, woodshole, USA, structural genomics, unknown function PSI-2, protein structure initiative; 1.70A {Vibrio cholerae}
Probab=22.59 E-value=52 Score=24.07 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=28.4
Q ss_pred ccCCCCceeeecceeeeecCCCcceeeEEEeeceeEeeec
Q 043931 66 FSVKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSE 105 (161)
Q Consensus 66 F~~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSd 105 (161)
|...+||+..=+.+=||---.|-. ||||+.|+ |+-
T Consensus 32 ft~~~GE~w~fa~~~flpYe~G~t---Lfis~dk~--~~~ 66 (93)
T 3g1j_A 32 INYERGDVMRFLGSNFVPYESGLS---LFFDKNGS--ERQ 66 (93)
T ss_dssp CEECTTCEEEEEEEEEETTTTEEE---EEEEETTE--EEE
T ss_pred cEeCCCCEEEEeeccCccccCceE---EEEecCCc--EEE
Confidence 446799999988888888888876 99999888 543
No 22
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=21.95 E-value=1.4e+02 Score=22.21 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCCCceeeecceeeeecCCCcceeeEEE
Q 043931 68 VKEGENLLKACQCYLSTTAGPIAGLLFI 95 (161)
Q Consensus 68 ~~~~EkLlka~~CYLSTsaGPVaG~Lfi 95 (161)
..|||.-.=++.|-|+|+.|-.-|....
T Consensus 76 L~PGe~f~YtSg~~L~tp~G~M~G~y~m 103 (127)
T 2f1e_A 76 LRPGEAFHYTSGVLLETEQGQMQGHYDM 103 (127)
T ss_dssp ECTTCEEEEEEEEEESSSCEEEEEEEEE
T ss_pred CCCCCceEEeCCcCcCCCcEEEEEEEEE
Confidence 4689999999999999999999998775
No 23
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=21.27 E-value=73 Score=21.13 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=17.8
Q ss_pred EEecCCcceeccccccCCCC-CceEEEEEeCCceeee
Q 043931 125 LIPLSKIKRVDQRVNMKKQS-EKYIEVYTVDGFDFWF 160 (161)
Q Consensus 125 vIPL~kik~vnps~n~~~p~-eKYIqIvTvD~~eFWF 160 (161)
+|||..+..|....+...+. .--++|+| ++..|.|
T Consensus 56 ~i~l~~~~~v~~~~~~~~~~~~~~F~i~~-~~r~~~l 91 (125)
T 1eaz_A 56 VIPLKEVHKVQECKQSDIMMRDNLFEIVT-TSRTFYV 91 (125)
T ss_dssp EEEGGGCCEEEECTTHHHHTCSSEEEEEC-SSCEEEE
T ss_pred EEEcccceEEeeccccccCCcCCEEEEEe-CCcEEEE
Confidence 56777776665533222222 23455554 4555554
No 24
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=20.66 E-value=1.4e+02 Score=22.23 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=34.4
Q ss_pred CCCCceeeecceeeeecCCCcceeeEEEeeceeEeeecCccceecCCCCeeeeEEEEEEecCCc
Q 043931 68 VKEGENLLKACQCYLSTTAGPIAGLLFISTNKVAFCSERSLKFYSSSGELIRVHYKVLIPLSKI 131 (161)
Q Consensus 68 ~~~~EkLlka~~CYLSTsaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~yYKVvIPL~ki 131 (161)
..|||.-.=++.|-|+|+.|-.-|....- .++|+ .+.|.||.=.|
T Consensus 75 L~PGe~f~YtSg~~L~tp~G~M~G~y~m~---------------~~~G~----~F~v~Ip~F~L 119 (126)
T 1xvs_A 75 IKANDEYTYSSGTALDTPVGVMQGQYLMI---------------DEQGE----SFTVEIEPFRL 119 (126)
T ss_dssp ECTTCEEEEEEEEEESSSEEEEEEEEEEE---------------CTTSC----EEEEEEEEEEE
T ss_pred CCCCCceEEeCCcCcCCCcEEEEEEEEEE---------------ECCCC----EEEEECCceEc
Confidence 46899999999999999999999987762 34554 46777775444
No 25
>2kmt_A CCDB; toxin; NMR {Vibrio fischeri} PDB: 3jrz_A 3jsc_A 3ku8_C* 3kua_C*
Probab=20.13 E-value=62 Score=23.23 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=22.3
Q ss_pred EEEEEecCCcceeccccccCCCCCceEEEEEeCCceeeeC
Q 043931 122 YKVLIPLSKIKRVDQRVNMKKQSEKYIEVYTVDGFDFWFM 161 (161)
Q Consensus 122 YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFM 161 (161)
..|||||-......+ ++..+.-=++++||.+|..|
T Consensus 34 trvVvPL~~~~~~~~-----~~~~~L~P~~~i~g~~~~l~ 68 (105)
T 2kmt_A 34 TRLVIPLTPIELLDK-----KAPSHLCPTIHIDEGDFIML 68 (105)
T ss_dssp CCEECCEECTTTTCS-----CCCSSSSCEEEETTEEEEEC
T ss_pred cEEEEECCchhhccc-----cCCCCeeeEEEECCEEEEEE
Confidence 569999976654433 12333334678899888765
No 26
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=20.11 E-value=1.3e+02 Score=22.86 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCCCceeeecceeeeecCCCcceeeEEE
Q 043931 68 VKEGENLLKACQCYLSTTAGPIAGLLFI 95 (161)
Q Consensus 68 ~~~~EkLlka~~CYLSTsaGPVaG~Lfi 95 (161)
..|||.-.=++.|-|+|+.|-.-|....
T Consensus 80 L~PGe~F~YtSg~~L~Tp~G~M~G~y~m 107 (139)
T 1xq4_A 80 LAPGETFEYTSGCPLPTPIGTMRGTYHC 107 (139)
T ss_dssp ECTTCEEEEEEEEEESSSEEEEEEEEEE
T ss_pred CCCCCceEEcCCcCcCCCceEEEEEEEE
Confidence 4689999999999999999999998775
Done!