BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043933
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3Z9K8|NRDR_DEHE1 Transcriptional repressor NrdR OS=Dehalococcoides ethenogenes
(strain 195) GN=nrdR PE=3 SV=1
Length = 175
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 33 FDKEKLL----RLVEFYPKDFFAIDLIALEMQLDLYRIG--ELARTMVNTKKDKVYPLVY 86
F+KEKLL R E P A+D IA +++ +LY +G E+ T++ ++
Sbjct: 59 FNKEKLLSGLRRACEKRPLPAGAVDKIAGDIEAELYNMGKAEIPSTLLGDM------VME 112
Query: 87 QLVTLALILPVAIATVERVFSSMTFVKNLLRN 118
+L L I V A+V R F+ +T +K ++ N
Sbjct: 113 KLKALDNIAYVRFASVYREFTDITQLKKVVDN 144
>sp|O43422|P52K_HUMAN 52 kDa repressor of the inhibitor of the protein kinase OS=Homo
sapiens GN=PRKRIR PE=1 SV=2
Length = 761
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 3 LQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLI---ALEM 59
+QEL + F+E + + L CL+ L + + E + D + DL L
Sbjct: 587 IQELKDIFSEQHLKALKCLS------LVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSA 640
Query: 60 QLDLYRIG--------ELARTM---VNTKKDKVYPLVYQLVTLALILPVAIATVERVFSS 108
+L +RI EL T+ ++ K +P VY L+ + ILPV ER +
Sbjct: 641 ELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENG 700
Query: 109 MTFVKNLLRNRMGDQ 123
+K LRN + DQ
Sbjct: 701 RKRLKAYLRNTLTDQ 715
>sp|Q9CUX1|P52K_MOUSE 52 kDa repressor of the inhibitor of the protein kinase OS=Mus
musculus GN=Prkrir PE=2 SV=2
Length = 758
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 3 LQELNNRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLI---ALEM 59
+QEL + F+E + + L CL+ L + + E + D + DL L
Sbjct: 584 IQELKDIFSEQHLKALKCLS------LVPSVMGQLKFNTSEEHHADMYRSDLPNPDTLSA 637
Query: 60 QLDLYRIG--------ELARTM---VNTKKDKVYPLVYQLVTLALILPVAIATVERVFSS 108
+L +RI EL T+ ++ K +P VY L+ + ILPV ER +
Sbjct: 638 ELHCWRIKWKHRGKDIELPSTIYEALHLPDIKFFPNVYALLKVLCILPVMKVENERYENG 697
Query: 109 MTFVKNLLRNRMGDQ 123
+K LRN + DQ
Sbjct: 698 RKRLKAYLRNTLTDQ 712
>sp|A5FSC0|NRDR_DEHSB Transcriptional repressor NrdR OS=Dehalococcoides sp. (strain BAV1)
GN=nrdR PE=3 SV=1
Length = 175
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 33 FDKEKLL----RLVEFYPKDFFAIDLIALEMQLDLYRIG--ELARTMVNTKKDKVYPLVY 86
F+KEKLL R E P A+D +A +++ +LY +G E+ T++ ++
Sbjct: 59 FNKEKLLSGLRRACEKRPLPAGAVDKVAGDIEAELYNMGKAEIPSTLLGDM------VME 112
Query: 87 QLVTLALILPVAIATVERVFSSMTFVKNLLRN 118
+L L I V A+V R F+ +T +K ++ N
Sbjct: 113 RLKMLDNIAYVRFASVYREFTDITQLKKVVDN 144
>sp|Q3ZZA1|NRDR_DEHSC Transcriptional repressor NrdR OS=Dehalococcoides sp. (strain
CBDB1) GN=nrdR PE=3 SV=1
Length = 175
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 33 FDKEKLL----RLVEFYPKDFFAIDLIALEMQLDLYRIG--ELARTMVNTKKDKVYPLVY 86
F+KEKLL R E P A+D +A +++ +LY +G E+ T++ ++
Sbjct: 59 FNKEKLLSGLRRACEKRPLPAGAVDKVAGDIEAELYNMGKAEIPSTLLGDM------VME 112
Query: 87 QLVTLALILPVAIATVERVFSSMTFVKNLLRN 118
+L L I V A+V R F+ +T +K ++ N
Sbjct: 113 RLKMLDNIAYVRFASVYREFTDITQLKKVVDN 144
>sp|P50748|KNTC1_HUMAN Kinetochore-associated protein 1 OS=Homo sapiens GN=KNTC1 PE=1 SV=1
Length = 2209
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 43 EFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPL 84
E+ DFF+ D I LE Q+ L I EL ++V + K YPL
Sbjct: 1190 EWSYSDFFSEDGIVLESQMVLPVIYELISSLVPLAESKRYPL 1231
>sp|P44565|MENE_HAEIN 2-succinylbenzoate--CoA ligase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=menE PE=3 SV=1
Length = 452
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 32 AFDKEKLLRLVEFYPKDFFAIDLIALEMQ-LDLYRIGELARTMVNTKKDKVYPLVYQLVT 90
AF +EK+ +L EFY DF D L +Q +D++ K D P L +
Sbjct: 84 AFPQEKIAKLCEFYQIDFCFYDKDLLNLQEIDVF----------TQKADFFRPATMTLTS 133
Query: 91 LALILPVAIA-TVERVFSSMTFVKNLLRNRMGDQWLM 126
+ LP A+ V+ + V NL++ WL+
Sbjct: 134 GSTGLPKAVVHNVQAHLDNAKGVCNLMKFDCNQSWLL 170
>sp|Q5SVZ6|ZMYM1_HUMAN Zinc finger MYM-type protein 1 OS=Homo sapiens GN=ZMYM1 PE=2 SV=1
Length = 1142
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 83 PLVYQLVTLALILPVAIATVERVFSSMTFVKNLLRNRMGDQWL 125
P + +L+ +AL P+ A+ E FS++ +K L N MG + L
Sbjct: 1064 PCLSKLLYIALSWPITSASTENSFSTLPRLKTYLCNTMGQEKL 1106
>sp|B4U8K1|SYI_HYDS0 Isoleucine--tRNA ligase OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=ileS PE=3 SV=1
Length = 937
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 40 RLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVYPLVYQLVTLALIL-PVA 98
RL+EF D A+ L+ +L +Y+ G R T L + L L ++L PV
Sbjct: 735 RLMEFVSIDLSALYFDVLKDRLYMYKSGSFERLSAQTV------LYFLLKNLTILLSPVL 788
Query: 99 IATVERVFSSMTFVKNLL 116
T E +S M ++N L
Sbjct: 789 SFTAEETYSYMKSIENHL 806
>sp|Q940Y9|POLL2_ARATH Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana
GN=At5g43745 PE=2 SV=1
Length = 817
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 8 NRFNESNTELLICLARLCPNDLFAAFDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYR-- 65
N ++E L AR L + ++++ +L E Y KDF ID++ L+L +
Sbjct: 282 NSYHEHAVRLGTATARKQRLLLMSDTPRKQMDKLAEAYSKDFNHIDILTKSCSLNLTKSF 341
Query: 66 ---IGELARTMV--NTKKDKVYPLVYQLVTLALILPVAIATVERVFSSMTFVK 113
+AR ++ TK D+ Y++ T A + +A+ ++++ S T V+
Sbjct: 342 ERAAASMARAIIILPTKGDR-----YEVDTDAFLSVLALQPIQKMESIPTIVE 389
>sp|Q17388|FER1_CAEEL Sperm vesicle fusion protein fer-1 OS=Caenorhabditis elegans
GN=fer-1 PE=2 SV=1
Length = 2034
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 33 FDKEKLLRLVEFYPKDFFAIDLIALEMQLDLYRIGELARTMVNTKKDKVY----PLVYQL 88
+ KEK+L+L E + K+ F+ID E+ L R+ R+M + V P++ ++
Sbjct: 595 YRKEKILKLREHFEKEAFSIDYSDGEVDAKLLRMLLKIRSMTLELAEDVQMTIPPVLIKM 654
Query: 89 VTLALILPVAIATVERVFSS 108
++ ++ A + +F S
Sbjct: 655 MSHGKLIGFAKIPISEIFQS 674
>sp|Q32LD4|TFB2M_BOVIN Dimethyladenosine transferase 2, mitochondrial OS=Bos taurus
GN=TFB2M PE=2 SV=1
Length = 394
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 10 FNESNTELLICLARLCPND---LFAAFDKEKLLRLVEFYPKDFFAI 52
F + N +L+ L L P D + K+K +R+V+ YPKDF +
Sbjct: 324 FMKRNAKLIDHLPSLSPIDAVHILKQIKKKKDVRVVDMYPKDFLRL 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,288,547
Number of Sequences: 539616
Number of extensions: 1411862
Number of successful extensions: 3884
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3874
Number of HSP's gapped (non-prelim): 20
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)