BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043934
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 8/99 (8%)
Query: 25 HIVGDETGWTT--NFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNV 77
H VGD TGWTT +DY WA + +F VGD L HNV++ D FK C S
Sbjct: 5 HKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPA 64
Query: 78 EALTSGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITV 116
+ TSG+D I L PG ++ CG P HC +G QK+ I V
Sbjct: 65 ASYTSGADSIPLKRPGTFYFLCGIPGHCQLG-QKVEIKV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 25 HIVGDETGWTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEA 79
++VG GWT F+ ++W K K FR GD L HNV+ + F C P+ +
Sbjct: 3 YVVGGSGGWT--FNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKV 60
Query: 80 LTSGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITVL 117
TSG D I L G+ ++ C FP HC G K+ + L
Sbjct: 61 YTSGRDQIKLPK-GQSYFICNFPGHCQSG-MKIAVNAL 96
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 30 ETGWTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEALTSGS 84
GW+ N + A+ K FR GD L KG HNV+ +G + C P +SG
Sbjct: 4 NIGWSFNVN---GARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQ 60
Query: 85 DVITLATPGKKWYFCGFPNHCDVGNQKLTIT 115
D I L T G+ ++ C FP HC G K+ I
Sbjct: 61 DRIKL-TRGQNYFICSFPGHCG-GGMKIAIN 89
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 23 KDHIVGDETGWTTNFD---YQAWAKAKEFRVGDRLK-----GSHNVIRADGASFKQCMKP 74
+D+ VG + W D Y WA K FRVGD L+ G H+V +F C K
Sbjct: 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKE 61
Query: 75 SNVEALTSGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITVL 117
+ + +T+ I L T G ++Y C +HC VG QKL+I V+
Sbjct: 62 NPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVG-QKLSINVV 103
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 25 HIVGDETGWTT----NFDYQAWAKAKEFRVGDRLK-----GSHNVIRAD-GASFKQCMKP 74
HIVGD TGW+ NF Y WA K FRVGD L+ +HNV + SF C
Sbjct: 6 HIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFV 64
Query: 75 SNVEALTSGSDVIT-LATPGKKWYFCGFPNHCDVGNQKLTITVLA 118
++ + S VI L G ++ C HC G QKL+I V+A
Sbjct: 65 NSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNG-QKLSINVVA 108
>pdb|3AQQ|A Chain A, Crystal Structure Of Human Crhsp-24
pdb|3AQQ|C Chain C, Crystal Structure Of Human Crhsp-24
pdb|3AQQ|B Chain B, Crystal Structure Of Human Crhsp-24
pdb|3AQQ|D Chain D, Crystal Structure Of Human Crhsp-24
Length = 147
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 54 LKGSHNVIRADGASFKQCMKPSNVEALTSGSDVITLATPGKK 95
++G + + D ++K C P E L + VIT PG K
Sbjct: 95 VEGEYVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAPGTK 136
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 82 SGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITV 116
SGS PG Y C FP H G K T+TV
Sbjct: 105 SGSVTFRTPAPGTYLYICTFPGHYLAG-MKGTLTV 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,453,999
Number of Sequences: 62578
Number of extensions: 169447
Number of successful extensions: 369
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 8
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)