Query 043934
Match_columns 159
No_of_seqs 111 out of 803
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 1.7E-40 5.8E-45 254.7 8.2 111 21-132 2-122 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.3E-38 4.4E-43 235.3 8.3 100 21-121 1-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 2.8E-38 9.5E-43 235.9 8.7 102 23-125 2-112 (116)
4 2cbp_A Cucumber basic protein; 100.0 6.6E-36 2.3E-40 216.2 7.0 91 23-117 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 1.1E-31 3.7E-36 192.5 7.7 86 23-117 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.0 3.4E-10 1.2E-14 84.3 6.2 90 21-117 15-139 (140)
7 1bxv_A Plastocyanin; copper pr 98.8 3.4E-09 1.1E-13 72.5 5.3 80 24-117 4-91 (91)
8 2cal_A Rusticyanin; iron respi 98.8 4.1E-09 1.4E-13 80.8 5.4 71 45-117 62-154 (154)
9 1iuz_A Plastocyanin; electron 98.4 2.1E-07 7.2E-12 65.1 4.6 85 24-117 3-98 (98)
10 2aan_A Auracyanin A; cupredoxi 98.4 9.6E-07 3.3E-11 65.4 8.4 88 22-117 18-139 (139)
11 1plc_A Plastocyanin; electron 98.4 3.5E-07 1.2E-11 63.7 5.2 84 24-117 2-99 (99)
12 2gim_A Plastocyanin; beta shee 98.4 3.6E-07 1.2E-11 64.1 5.2 83 24-117 5-105 (106)
13 1pmy_A Pseudoazurin; electron 98.3 1.1E-06 3.8E-11 64.9 6.4 76 28-118 11-94 (123)
14 1kdj_A Plastocyanin; electron 98.3 1.1E-06 3.9E-11 61.3 6.1 84 24-117 2-102 (102)
15 1b3i_A PETE protein, protein ( 98.3 8.1E-07 2.8E-11 61.5 5.2 84 24-117 4-97 (97)
16 1paz_A Pseudoazurin precursor; 98.3 1.3E-06 4.4E-11 64.6 5.8 76 28-118 11-94 (123)
17 1byp_A Protein (plastocyanin); 98.3 1.2E-06 4.2E-11 60.8 5.3 85 24-117 2-99 (99)
18 2plt_A Plastocyanin; electron 98.2 1.1E-06 3.6E-11 60.9 3.5 85 24-117 3-98 (98)
19 1iko_P Ephrin-B2; greek KEY, g 98.2 6E-07 2E-11 71.1 2.3 74 49-122 27-144 (178)
20 1pcs_A Plastocyanin; electron 98.0 3.3E-06 1.1E-10 58.5 4.0 85 24-117 4-98 (98)
21 3tu6_A Pseudoazurin (blue copp 98.0 1E-05 3.6E-10 60.2 6.8 77 28-119 12-97 (127)
22 3erx_A Pseudoazurin; copper pr 98.0 1.1E-05 3.7E-10 59.8 6.9 65 45-118 22-94 (123)
23 3ef4_A Pseudoazurin, blue copp 98.0 1.3E-05 4.3E-10 59.7 6.4 77 28-118 10-95 (124)
24 3d12_B Ephrin-B3; beta propell 97.7 3.6E-05 1.2E-09 58.8 4.4 70 47-117 23-140 (141)
25 3ay2_A Lipid modified azurin p 97.6 0.00011 3.6E-09 57.4 6.2 88 22-117 42-166 (167)
26 1cuo_A Protein (azurin ISO-2); 97.6 0.00013 4.6E-09 54.2 6.3 86 24-117 4-128 (129)
27 2vsm_B Ephrin-B2; developmenta 97.6 5E-05 1.7E-09 57.9 3.8 62 57-118 48-139 (140)
28 3c75_A Amicyanin; copper prote 97.5 0.00011 3.8E-09 54.3 5.3 61 45-117 61-132 (132)
29 2x11_B Ephrin-A5; receptor-sig 97.5 0.0003 1E-08 55.6 7.6 95 21-121 30-165 (177)
30 3cvb_A Plastocyanin; cupredoxi 97.4 0.00033 1.1E-08 48.4 5.9 83 24-117 4-104 (105)
31 4hci_A Cupredoxin 1; structura 97.3 0.00012 4E-09 51.1 2.6 29 86-117 72-100 (100)
32 1id2_A Amicyanin; beta barrel, 97.1 0.00093 3.2E-08 47.2 6.0 78 21-117 18-106 (106)
33 1nwp_A Azurin; electron transp 97.1 0.00064 2.2E-08 50.5 4.8 86 24-117 4-128 (128)
34 2ov0_A Amicyanin; beta-sandwic 97.1 0.00096 3.3E-08 46.9 5.5 78 21-117 17-105 (105)
35 2ccw_A Azurin II, AZN-2; elect 97.0 0.0041 1.4E-07 46.1 8.5 30 86-117 96-128 (129)
36 3czu_B Ephrin-A1; ATP-binding, 96.8 0.0013 4.5E-08 52.1 5.1 89 21-120 28-162 (182)
37 2iaa_C Azurin; quinoprotein, t 96.8 0.0033 1.1E-07 46.6 7.0 35 81-117 87-127 (128)
38 2ux6_A Pseudoazurin; type-1 co 96.8 0.0021 7.1E-08 47.0 5.4 63 45-118 22-92 (122)
39 1shx_A Ephrin-A5; ephrin signa 96.7 0.002 6.8E-08 48.9 5.0 70 47-120 24-135 (138)
40 3hei_B Ephrin-A1; EPH receptor 96.4 0.0061 2.1E-07 45.9 6.0 70 47-116 23-130 (132)
41 1iby_A Nitrosocyanin; RED copp 95.7 0.0099 3.4E-07 41.8 3.8 62 45-117 39-111 (112)
42 2wo3_B Ephrin-A2; transferase- 95.6 0.02 6.9E-07 44.2 5.8 30 46-75 32-77 (157)
43 2cua_A Protein (CUA); CUA cent 93.7 0.079 2.7E-06 39.3 4.6 30 85-117 102-134 (135)
44 2dv6_A Nitrite reductase; elec 91.9 0.17 5.7E-06 43.3 4.7 72 45-121 56-135 (447)
45 3s8f_B Cytochrome C oxidase su 89.4 0.36 1.2E-05 37.2 4.1 31 86-117 136-167 (168)
46 3sbq_A Nitrous-oxide reductase 85.5 0.88 3E-05 42.0 4.8 31 86-118 605-637 (638)
47 3fsa_A Azurin; copper, cupredo 85.1 0.88 3E-05 33.6 3.9 22 91-117 104-125 (125)
48 1fwx_A Nitrous oxide reductase 76.2 2.8 9.5E-05 38.3 4.7 31 86-119 560-593 (595)
49 1oe1_A Dissimilatory copper-co 70.7 3.3 0.00011 33.9 3.6 34 86-120 286-320 (336)
50 3l6w_A Hemocyanin 1; cupredoxi 68.5 3.4 0.00012 37.0 3.3 27 91-117 465-491 (491)
51 3gdc_A Multicopper oxidase; be 60.0 3.4 0.00012 33.4 1.6 32 86-118 257-288 (288)
52 1oe1_A Dissimilatory copper-co 59.3 16 0.00053 29.8 5.5 35 86-121 117-155 (336)
53 1mzy_A Copper-containing nitri 57.8 17 0.00058 29.6 5.5 35 86-121 116-155 (333)
54 1mzy_A Copper-containing nitri 55.8 6.6 0.00023 32.1 2.7 34 86-120 286-320 (333)
55 2b1y_A Hypothetical protein AT 54.0 3.2 0.00011 29.8 0.4 73 46-120 14-94 (104)
56 1sdd_A Coagulation factor V; c 48.1 2.3 8E-05 34.7 -1.3 33 86-119 269-301 (306)
57 3m62_B UV excision repair prot 48.1 7.1 0.00024 27.0 1.4 29 106-135 63-91 (106)
58 3t9w_A Small laccase, multi-co 44.3 11 0.00038 30.6 2.3 32 90-122 260-291 (299)
59 1cyx_A CYOA; electron transpor 43.9 26 0.00089 27.7 4.3 30 86-117 84-115 (205)
60 3gdc_A Multicopper oxidase; be 42.0 47 0.0016 26.5 5.7 35 86-121 120-157 (288)
61 2bw4_A Copper-containing nitri 41.5 21 0.00071 29.1 3.5 34 86-120 292-326 (340)
62 2dv6_A Nitrite reductase; elec 40.7 18 0.00062 30.5 3.1 34 86-120 402-435 (447)
63 2j5w_A Ceruloplasmin, ferroxid 40.5 18 0.00063 34.7 3.4 37 86-123 325-361 (1065)
64 3hb3_B Cytochrome C oxidase su 39.8 27 0.00092 29.0 4.0 32 86-119 232-265 (298)
65 3kw8_A Laccase, putative coppe 39.3 20 0.00069 28.5 3.0 34 87-121 232-268 (276)
66 1kbv_A ANIA, major outer membr 39.3 21 0.0007 29.2 3.2 34 86-120 275-309 (327)
67 3cg8_A Laccase; oxidoreductase 38.0 17 0.00057 30.2 2.4 31 90-121 279-309 (343)
68 1v54_B Cytochrome C oxidase po 36.1 16 0.00053 29.1 1.9 31 86-118 183-215 (227)
69 2zoo_A Probable nitrite reduct 34.1 30 0.001 29.2 3.4 35 86-121 265-300 (442)
70 2gsm_B Cytochrome C oxidase su 34.0 22 0.00074 28.9 2.4 31 86-118 214-246 (262)
71 2nms_A CMRF35-like-molecule 1; 33.7 12 0.00041 25.8 0.8 28 91-121 86-114 (124)
72 2j5w_A Ceruloplasmin, ferroxid 30.5 31 0.001 33.1 3.2 72 45-121 633-720 (1065)
73 1sdd_B Coagulation factor V; c 28.7 28 0.00097 31.1 2.5 32 86-118 296-327 (647)
74 1kbv_A ANIA, major outer membr 27.6 33 0.0011 28.0 2.5 34 86-120 122-158 (327)
75 1fft_B Ubiquinol oxidase; elec 27.1 30 0.001 29.0 2.2 30 86-117 194-225 (315)
76 3g5w_A Multicopper oxidase typ 26.6 78 0.0027 25.7 4.6 34 86-120 239-278 (318)
77 3tas_A Small laccase, multi-co 25.0 47 0.0016 26.9 3.0 30 91-121 245-274 (313)
78 2l8d_A Lamin-B receptor; DNA b 23.3 71 0.0024 20.9 3.0 42 45-90 7-54 (66)
79 2zoo_A Probable nitrite reduct 23.3 33 0.0011 28.9 1.7 34 86-120 112-148 (442)
80 2zwn_A Two-domain type laccase 23.0 1.1E+02 0.0037 24.9 4.9 34 86-120 240-279 (339)
81 2dig_A Lamin-B receptor; tudor 21.3 1E+02 0.0034 20.3 3.4 43 45-91 10-58 (68)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=1.7e-40 Score=254.69 Aligned_cols=111 Identities=37% Similarity=0.607 Sum_probs=95.5
Q ss_pred cccEEEecCCCCCCCC---CChhhhhcCCceeeCcEE-----cCcccEEEe-CcccccccCCCCCcccccCCCcEEEe-c
Q 043934 21 LGKDHIVGDETGWTTN---FDYQAWAKAKEFRVGDRL-----KGSHNVIRA-DGASFKQCMKPSNVEALTSGSDVITL-A 90 (159)
Q Consensus 21 ~a~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V-~~~~Y~~C~~~~~~~~~~~G~~~v~L-~ 90 (159)
+|++|+|||+.||+++ .||++||++++|++||+| ++.|+|+|| ++++|+.|+.++++..+++|++.|+| +
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L~~ 81 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLD 81 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEECC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEecc
Confidence 5789999999999998 789999999999999999 689999999 99999999999999999999999999 9
Q ss_pred CCCeEEEEeCCCCCCCCCCceEEEEEecCCCCCCCCCCCCCC
Q 043934 91 TPGKKWYFCGFPNHCDVGNQKLTITVLAQREVSSPAPSPSDL 132 (159)
Q Consensus 91 ~~G~~YFic~~~~HC~~G~mKl~I~V~~~~~~p~p~psp~~~ 132 (159)
++|++||||++++||++| |||+|+|.+..++|+++|+|+.+
T Consensus 82 ~~G~~YFicg~~gHC~~G-mKl~I~V~~~~~~~~~~p~~~~p 122 (138)
T 1jer_A 82 ELGMHYFVCTVGTHCSNG-QKLSINVVAANATVSMPPPSSSP 122 (138)
T ss_dssp SSEEEEEECCSTTTGGGT-CEEEEEEECCC------------
T ss_pred CCcCEEEEcCCCCccccC-CEEEEEEcCCCCCCCCCCCCCCC
Confidence 999999999999999999 99999999887766655554443
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.3e-38 Score=235.33 Aligned_cols=100 Identities=44% Similarity=0.862 Sum_probs=93.4
Q ss_pred cccEEEecCCCCCCCC--CChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccccCCCcEEEecCCC
Q 043934 21 LGKDHIVGDETGWTTN--FDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEALTSGSDVITLATPG 93 (159)
Q Consensus 21 ~a~~~~VGg~~GW~~~--~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G 93 (159)
+|++|+|||+.||+++ .||++||++++|++||+| ++.|+|+||++++|+.|+.++|+..+++|++.|+|+++|
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~~~G 80 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG 80 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCSSE
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEECCCc
Confidence 4789999999999998 799999999999999999 688999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCCCceEEEEEecCCC
Q 043934 94 KKWYFCGFPNHCDVGNQKLTITVLAQRE 121 (159)
Q Consensus 94 ~~YFic~~~~HC~~G~mKl~I~V~~~~~ 121 (159)
++||||++++||+.| |||+|+|.++++
T Consensus 81 ~~yFic~~~gHC~~G-mKl~I~V~~~~s 107 (109)
T 1ws8_A 81 TFYFLCGIPGHCQLG-QKVEIKVDPGSS 107 (109)
T ss_dssp EEEEECCSTTTTTTT-CEEEEEECC---
T ss_pred CEEEECCCCCcccCC-CEEEEEEcCCCC
Confidence 999999999999999 999999976543
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=2.8e-38 Score=235.93 Aligned_cols=102 Identities=36% Similarity=0.632 Sum_probs=90.8
Q ss_pred cEEEecCCCCCCCC---CChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccccCCCcEEEecCCCe
Q 043934 23 KDHIVGDETGWTTN---FDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEALTSGSDVITLATPGK 94 (159)
Q Consensus 23 ~~~~VGg~~GW~~~---~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G~ 94 (159)
++|+|||+.||+++ .+|++|+++++|++||+| ++.|+|+||++++|++|+.++|+..+++|++.|+|+++|+
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~ 81 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGP 81 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSCEE
T ss_pred eEEEECCcCcCcCCCCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCCCC
Confidence 58999999999985 579999999999999999 6899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCceEEE-EEecCCCCCCC
Q 043934 95 KWYFCGFPNHCDVGNQKLTI-TVLAQREVSSP 125 (159)
Q Consensus 95 ~YFic~~~~HC~~G~mKl~I-~V~~~~~~p~p 125 (159)
+||||++++||++| |||+| +|.+++++++|
T Consensus 82 ~yFic~~~~HC~~G-mkl~In~V~~~~~~~~~ 112 (116)
T 1x9u_A 82 QYYICTVGDHCRVG-QKLSINVVGAGGAGGGA 112 (116)
T ss_dssp EEEECCSTTTTTTT-CEEEEEEECC-------
T ss_pred EEEECCCCCccccC-CEEEEEEECCCCCCCCC
Confidence 99999999999999 99999 88877654433
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.6e-36 Score=216.19 Aligned_cols=91 Identities=37% Similarity=0.820 Sum_probs=87.1
Q ss_pred cEEEecCCCCCCCCCChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccccCCCcEEEecCCCeEEE
Q 043934 23 KDHIVGDETGWTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEALTSGSDVITLATPGKKWY 97 (159)
Q Consensus 23 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G~~YF 97 (159)
++|+|||+.||++ +|++|+++++|++||+| ++.|+|+||++++|+.|+.++|+..+++|++.|+| ++|++||
T Consensus 1 ~~~~VG~~~GW~~--~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~g~~yF 77 (96)
T 2cbp_A 1 AVYVVGGSGGWTF--NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PKGQSYF 77 (96)
T ss_dssp CEEETTGGGCSCS--SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CSEEEEE
T ss_pred CEEEECCcCCCcc--ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cCCCEEE
Confidence 4799999999997 69999999999999999 68999999999999999999999999999999999 8999999
Q ss_pred EeCCCCCCCCCCceEEEEEe
Q 043934 98 FCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 98 ic~~~~HC~~G~mKl~I~V~ 117 (159)
||++++||++| |||+|+|+
T Consensus 78 ic~~~~HC~~G-mkl~I~Vl 96 (96)
T 2cbp_A 78 ICNFPGHCQSG-MKIAVNAL 96 (96)
T ss_dssp ECCSTTTGGGT-CEEEEEEC
T ss_pred EcCCCCccccC-CEEEEEEC
Confidence 99999999999 99999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=99.97 E-value=1.1e-31 Score=192.45 Aligned_cols=86 Identities=37% Similarity=0.779 Sum_probs=81.4
Q ss_pred cEEEecCCCCCCCCCChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccccCCCcEEEecCCCeEEE
Q 043934 23 KDHIVGDETGWTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEALTSGSDVITLATPGKKWY 97 (159)
Q Consensus 23 ~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G~~YF 97 (159)
++|+| ||+++ ++|+++++|++||+| ++.|+|+||++++|+.|+.++|+..+++|++.|+|+ +|++||
T Consensus 1 ~~y~V----gW~~~---~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~g~~yF 72 (91)
T 1f56_A 1 AVYNI----GWSFN---VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQNYF 72 (91)
T ss_dssp CEEEE----ECSSS---CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-SEEEEE
T ss_pred CEEEE----eCCCC---CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-CCCeEE
Confidence 47899 89997 899999999999999 689999999999999999999999999999999996 899999
Q ss_pred EeCCCCCCCCCCceEEEEEe
Q 043934 98 FCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 98 ic~~~~HC~~G~mKl~I~V~ 117 (159)
||++++||++| |||+|+|.
T Consensus 73 ic~~~~HC~~G-mkl~I~v~ 91 (91)
T 1f56_A 73 ICSFPGHCGGG-MKIAINAK 91 (91)
T ss_dssp ECCSTTTTTTT-CEEEEEEC
T ss_pred EcCCCCccccC-CEEEEEEC
Confidence 99999999999 99999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.03 E-value=3.4e-10 Score=84.29 Aligned_cols=90 Identities=23% Similarity=0.308 Sum_probs=61.4
Q ss_pred cccEEEecCC-CCCCCCCChhhhhcCCceeeCcEE-----c-----CcccEEEeCcc-ccccc-----------------
Q 043934 21 LGKDHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL-----K-----GSHNVIRADGA-SFKQC----------------- 71 (159)
Q Consensus 21 ~a~~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L-----~-----~~h~V~~V~~~-~Y~~C----------------- 71 (159)
..+++.|+-. .+|.+.++ ..+++.||++ + ..|+++..+.. ++..+
T Consensus 15 ~~~~v~V~~~~~~~~F~P~------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (140)
T 1qhq_A 15 PAQTVEVRAAPDALAFAQT------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPP 88 (140)
T ss_dssp CSEEEEEEBCSSSSSBSCS------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCT
T ss_pred CCEEEEEEEeCCCceEeCC------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCcc
Confidence 4567777764 35887653 5688999987 3 57999887432 22211
Q ss_pred CCCC------CcccccCCCcEEEecCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 72 MKPS------NVEALTSGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 72 ~~~~------~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+..+ .+....++...|++++||+|||+|++++||..| ||..|+|.
T Consensus 89 ~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~G-M~g~i~V~ 139 (140)
T 1qhq_A 89 DTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAG-MKGTLTVT 139 (140)
T ss_dssp TCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTT-CEEEEEEE
T ss_pred ccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcC-CEEEEEEc
Confidence 0001 111223334568888999999999999999999 99999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.84 E-value=3.4e-09 Score=72.55 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=56.2
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCcccccccCCCCCcccccCC-CcEEEecCCCeE
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGASFKQCMKPSNVEALTSG-SDVITLATPGKK 95 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G-~~~v~L~~~G~~ 95 (159)
+..+|++ .+|.+.++ ..++++||++ ...|+|.......+. . .. .....| ...+++++||+|
T Consensus 4 ~v~~~~~~~~~~f~P~------~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~-~---~~-~~~~~g~~~~~~f~~~G~y 72 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS------TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS-H---KD-LAFSPGETFEATFSEPGTY 72 (91)
T ss_dssp EEEESCTTSCSSEESS------EEEECTTCEEEEEECSSCCEEEEETTCGGGC-E---EE-EECSTTCEEEEECCSCEEE
T ss_pred EEEEecCCCccEEeCC------EEEECCCCEEEEEECCCCCcEEEEeCCCccC-c---cc-ceeCCCCEEEEEeCCCEEE
Confidence 3456664 45776553 4689999999 367999876533321 0 11 123344 457899999999
Q ss_pred EEEeCCCCCCCCCCceEEEEEe
Q 043934 96 WYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 96 YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+|+|. .||..| |+..|.|+
T Consensus 73 ~~~C~--~H~~~g-M~g~i~V~ 91 (91)
T 1bxv_A 73 TYYCE--PHRGAG-MVGKIVVQ 91 (91)
T ss_dssp EEECT--TTGGGT-CEEEEEEC
T ss_pred EEEeC--CCccCC-CEEEEEEC
Confidence 99999 799999 99999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=98.81 E-value=4.1e-09 Score=80.81 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=53.4
Q ss_pred CCceeeCcEE-----c----CcccEEEeCc-ccccccCCCCCcc-------cccCCC---c--EEEecCCCeEEEEeCCC
Q 043934 45 AKEFRVGDRL-----K----GSHNVIRADG-ASFKQCMKPSNVE-------ALTSGS---D--VITLATPGKKWYFCGFP 102 (159)
Q Consensus 45 ~~~F~vGD~L-----~----~~h~V~~V~~-~~Y~~C~~~~~~~-------~~~~G~---~--~v~L~~~G~~YFic~~~ 102 (159)
..++++||++ + ..|++..++. ..|+.|.....+. ....|. . .|++ +||+|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 3577899998 2 2699999954 6788887654431 112333 3 5678 999999999999
Q ss_pred CCCCCCCceEEEEEe
Q 043934 103 NHCDVGNQKLTITVL 117 (159)
Q Consensus 103 ~HC~~G~mKl~I~V~ 117 (159)
+||..| ||..|.|+
T Consensus 141 gH~~~G-M~G~IiV~ 154 (154)
T 2cal_A 141 GMAATG-MFGKIVVK 154 (154)
T ss_dssp TTGGGT-CEEEEEEC
T ss_pred CHHHCC-CEEEEEEC
Confidence 999999 99999984
No 9
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.43 E-value=2.1e-07 Score=65.08 Aligned_cols=85 Identities=22% Similarity=0.255 Sum_probs=55.9
Q ss_pred EEEecC-CCCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCc---ccccccCCCCCcccccCCCc-EEEecCC
Q 043934 24 DHIVGD-ETGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADG---ASFKQCMKPSNVEALTSGSD-VITLATP 92 (159)
Q Consensus 24 ~~~VGg-~~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~---~~Y~~C~~~~~~~~~~~G~~-~v~L~~~ 92 (159)
+..+|+ +.++.+.++ ..++++||++ ...|+|...+. ++++.+...........|.+ .+++++|
T Consensus 3 ~V~m~~~~~~~~F~P~------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~tf~~~ 76 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVPS------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTP 76 (98)
T ss_dssp EEEESCTTSCCSEESS------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEEECCSC
T ss_pred EEEEecCCCCcEEeCC------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEEEcCCC
Confidence 445555 346776553 4678899999 35899877542 12332211111012344443 7899999
Q ss_pred CeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 93 GKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 93 G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
|+|.|.|.. ||..| |+..|.|+
T Consensus 77 G~y~y~C~~--H~~~g-M~G~I~V~ 98 (98)
T 1iuz_A 77 GVYGVYCEP--HAGAG-MKMTITVQ 98 (98)
T ss_dssp EEEEEECTT--TGGGT-CEEEEEEC
T ss_pred EEEEEEchh--hccCC-CEEEEEEC
Confidence 999999996 99999 99999984
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.42 E-value=9.6e-07 Score=65.44 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=57.9
Q ss_pred ccEEEecC-CCCCCCCCChhhhhcCCceeeCcEE--------cC-cccEEEeCcc------------------cccccCC
Q 043934 22 GKDHIVGD-ETGWTTNFDYQAWAKAKEFRVGDRL--------KG-SHNVIRADGA------------------SFKQCMK 73 (159)
Q Consensus 22 a~~~~VGg-~~GW~~~~~Y~~Wa~~~~F~vGD~L--------~~-~h~V~~V~~~------------------~Y~~C~~ 73 (159)
..++.||. ..++.+.++ ..++++||++ .. .|++...... +|..|..
T Consensus 18 ~~~V~v~~~~~~~~F~p~------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 91 (139)
T 2aan_A 18 PVTIEIGSKGEELAFDKT------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADK 91 (139)
T ss_dssp CEEEEEEBCTTSSSBSCS------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCC
T ss_pred CEEEEEEecCCccEEcCC------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCccc
Confidence 34566753 235666543 4678899987 22 7999887532 4555553
Q ss_pred CCCc---ccccCCCc---EEEecCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 74 PSNV---EALTSGSD---VITLATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 74 ~~~~---~~~~~G~~---~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
.+.+ .....|.+ .|++++||+|+|+|.+++||. | |+-.|.|.
T Consensus 92 ~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-G-M~G~i~V~ 139 (139)
T 2aan_A 92 SNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-L-MQGKLVVN 139 (139)
T ss_dssp TTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-T-SEEEEEEC
T ss_pred ccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-c-CEEEEEEC
Confidence 3221 12344433 345558999999999999999 9 99999884
No 11
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.39 E-value=3.5e-07 Score=63.68 Aligned_cols=84 Identities=15% Similarity=0.274 Sum_probs=55.1
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCcc---cccccCC---CCCcccccCCC-cEEEe
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGA---SFKQCMK---PSNVEALTSGS-DVITL 89 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~---~Y~~C~~---~~~~~~~~~G~-~~v~L 89 (159)
+..+|++ .++.+.++ ..++++||++ ...|+|...+.. +.+.+.. .... ....|. ..+++
T Consensus 2 ~v~m~~~~~~~~F~P~------~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~-~~~~G~~~~~tf 74 (99)
T 1plc_A 2 DVLLGADDGSLAFVPS------EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDL-LNAKGETFEVAL 74 (99)
T ss_dssp EEEESCTTCCSCEESS------EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCC-BCSTTCEEEEEC
T ss_pred EEEEecCCCcceEeCC------EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCcc-ccCCCCEEEEEE
Confidence 3456654 35666442 4678899999 347999876431 1222210 0111 223343 47899
Q ss_pred cCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 90 ATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 90 ~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
++||+|.|.|. .||..| |+..|.|+
T Consensus 75 ~~~G~y~~~C~--~H~~~g-M~G~i~V~ 99 (99)
T 1plc_A 75 SNKGEYSFYCS--PHQGAG-MVGKVTVN 99 (99)
T ss_dssp CSCEEEEEECG--GGTTTT-CEEEEEEC
T ss_pred CCCceEEEEcC--CCcccC-CEEEEEEC
Confidence 99999999999 799999 99999984
No 12
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.39 E-value=3.6e-07 Score=64.14 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=54.7
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCcccc-----cc--cCCCCCcccccCC-CcEEE
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGASF-----KQ--CMKPSNVEALTSG-SDVIT 88 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~~Y-----~~--C~~~~~~~~~~~G-~~~v~ 88 (159)
+..+|.+ .++.+.++ ..++++||++ ...|++...+.... +. +.. +.. ....| ...++
T Consensus 5 ~V~~~~~~~~~~F~P~------~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~pG~~~~~~ 76 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA------KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-KQL-LMSPGQSTSTT 76 (106)
T ss_dssp EEEESCTTCCSSEESS------EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-CSC-CCSTTCEEEEE
T ss_pred EEEEEecCCcceEcCC------EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-cce-eeCCCCEEEEE
Confidence 4456653 56777553 4678899999 35799886543110 00 111 111 22334 34788
Q ss_pred e---cCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 89 L---ATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 89 L---~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+ ++||.|+|.|. .||+.| |+..|.|.
T Consensus 77 f~~~~~~G~y~y~C~--~H~~~G-M~G~i~V~ 105 (106)
T 2gim_A 77 FPADAPAGEYTFYCE--PHRGAG-MVGKITVA 105 (106)
T ss_dssp CCTTCCSEEEEEECT--TTGGGT-CEEEEEEC
T ss_pred EecCCCCceEEEEeC--ChhhcC-cEEEEEEc
Confidence 8 89999999999 799999 99999996
No 13
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.31 E-value=1.1e-06 Score=64.95 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=51.7
Q ss_pred cCCCCCCCCCChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccc--cCCC-cEEEecCCCeEEEEe
Q 043934 28 GDETGWTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEAL--TSGS-DVITLATPGKKWYFC 99 (159)
Q Consensus 28 Gg~~GW~~~~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~--~~G~-~~v~L~~~G~~YFic 99 (159)
|++.++.+.++ ..++.+||++ ...|+|.... .|...... .+ ..|. ..+++++||.|.|.|
T Consensus 11 g~~g~~~F~P~------~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~-~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1pmy_A 11 GPGGMMVFDPA------LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGAD-YVKTTVGQEAVVKFDKEGVYGFKC 78 (123)
T ss_dssp ETTEEEEEESS------EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCC-CCBCCTTSCEEEECCSCEEEEEEC
T ss_pred cCCCCceEeCC------EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCcc-ceecCCCCEEEEEeCCCeEEEEEe
Confidence 44434555443 4678899999 4579998753 12211111 11 2233 478999999999999
Q ss_pred CCCCCCCCCCceEEEEEec
Q 043934 100 GFPNHCDVGNQKLTITVLA 118 (159)
Q Consensus 100 ~~~~HC~~G~mKl~I~V~~ 118 (159)
+ .||..| |+..|+|..
T Consensus 79 ~--~H~~~g-M~G~I~V~~ 94 (123)
T 1pmy_A 79 A--PHYMMG-MVALVVVGD 94 (123)
T ss_dssp S--TTTTTT-CEEEEEESS
T ss_pred C--CccccC-CEEEEEEcC
Confidence 8 499999 999999974
No 14
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.31 E-value=1.1e-06 Score=61.27 Aligned_cols=84 Identities=24% Similarity=0.304 Sum_probs=55.3
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCccccc----ccCCC-----CCcccccCC-CcE
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGASFK----QCMKP-----SNVEALTSG-SDV 86 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~~Y~----~C~~~-----~~~~~~~~G-~~~ 86 (159)
+..+|.+ .++.+.++ ..++++||++ ...|++...+...++ .|+.. +.. ....| ...
T Consensus 2 ~V~~g~~~~~~~F~P~------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pG~~~~ 74 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPD------SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDL-LSEDEPSFK 74 (102)
T ss_dssp EEEESCTTCCCCEESS------EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCC-BBTTBCEEE
T ss_pred EEEEecCCCccEEeCC------EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccce-ecCCCCEEE
Confidence 3456764 45666443 4678899998 357998876433321 12111 111 12334 347
Q ss_pred EEecCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 87 ITLATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 87 v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+++++||+|.|.|. .||..| |+..|.|.
T Consensus 75 ~tf~~~G~y~y~C~--~H~~~g-M~G~i~V~ 102 (102)
T 1kdj_A 75 AKVSTPGTYTFYCT--PHKSAN-MKGTLTVK 102 (102)
T ss_dssp ECCCSCEEEEEECS--TTGGGT-CEEEEEEC
T ss_pred EEeCCCeEEEEEeC--CCcccC-CeEEEEEC
Confidence 88999999999999 899999 99999984
No 15
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.31 E-value=8.1e-07 Score=61.51 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=54.0
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCcc---cccccCCCCCcccccCCCcEEEecCCC
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGA---SFKQCMKPSNVEALTSGSDVITLATPG 93 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~---~Y~~C~~~~~~~~~~~G~~~v~L~~~G 93 (159)
+..+|++ .++.+.++ ..++++||++ ...|++...+.. +.+.+... ......+....+++++||
T Consensus 4 ~V~~~~~~~~~~F~P~------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~tf~~~G 76 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPK------ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNT-KLAIAPGSFYSVTLGTPG 76 (97)
T ss_dssp EEEEEETTTEEEEESS------EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBC-CCCCSCSCCEEEECCSCS
T ss_pred EEEEeccCCccEEeCC------EEEECCCCEEEEEECCCCCeEEEEeCCCCcccccccccc-ceecCCCCEEEEEeCCCe
Confidence 3445643 45655442 4678899999 347998775321 11112111 111222334578999999
Q ss_pred eEEEEeCCCCCCCCCCceEEEEEe
Q 043934 94 KKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 94 ~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+|.|.|. .||..| |+..|.|.
T Consensus 77 ~y~y~C~--~H~~~g-M~G~i~V~ 97 (97)
T 1b3i_A 77 TYSFYCT--PHRGAG-MVGTITVE 97 (97)
T ss_dssp EEEEECS--STTTTT-CEEEEEEC
T ss_pred EEEEEcc--ChhhcC-CEEEEEEC
Confidence 9999999 899999 99999984
No 16
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.26 E-value=1.3e-06 Score=64.58 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=51.2
Q ss_pred cCCCCCCCCCChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccc--cCCC-cEEEecCCCeEEEEe
Q 043934 28 GDETGWTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEAL--TSGS-DVITLATPGKKWYFC 99 (159)
Q Consensus 28 Gg~~GW~~~~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~--~~G~-~~v~L~~~G~~YFic 99 (159)
|++.++.+.++ ..++.+||++ ...|+|.... .|...... .+ ..|. ..+++++||.|.|.|
T Consensus 11 g~~g~~~F~P~------~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~-~~~~~pG~t~~~tF~~~G~y~y~C 78 (123)
T 1paz_A 11 GAEGAMVFEPA------YIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAE-KFKSKINENYVLTVTQPGAYLVKC 78 (123)
T ss_dssp ETTEEEEEESS------EEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCC-CCBCCTTCCEEEECCSCEEEEEEC
T ss_pred cCCCCceEeCC------EEEECCCCEEEEEECCCCeEEEEec-----ccCCCCcc-ceecCCCCEEEEEeCCCEEEEEEe
Confidence 44434555442 4678899999 4479998642 12111110 12 1233 478999999999999
Q ss_pred CCCCCCCCCCceEEEEEec
Q 043934 100 GFPNHCDVGNQKLTITVLA 118 (159)
Q Consensus 100 ~~~~HC~~G~mKl~I~V~~ 118 (159)
+ .||..| |+..|+|..
T Consensus 79 ~--~H~~~g-M~G~I~V~~ 94 (123)
T 1paz_A 79 T--PHYAMG-MIALIAVGD 94 (123)
T ss_dssp T--TTGGGT-CEEEEEESS
T ss_pred C--CcccCC-CEEEEEEcC
Confidence 8 499999 999999974
No 17
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.26 E-value=1.2e-06 Score=60.79 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=54.9
Q ss_pred EEEecC-CCCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCc---ccccccCCC--CCcccccCCC-cEEEec
Q 043934 24 DHIVGD-ETGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADG---ASFKQCMKP--SNVEALTSGS-DVITLA 90 (159)
Q Consensus 24 ~~~VGg-~~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~---~~Y~~C~~~--~~~~~~~~G~-~~v~L~ 90 (159)
+..+|+ +.++.+.++ ..++++||++ ...|++...+. +.++.+... ........|. ..++++
T Consensus 2 ~V~~~~~~~~~~F~P~------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~~~f~ 75 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPS------DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYSVTLT 75 (99)
T ss_dssp EEEESCTTSCCSEESS------EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEEEEEC
T ss_pred EEEEecCCCcceEeCC------EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEEEEeC
Confidence 345665 345666543 4578899999 34799877542 122222110 0001223443 478899
Q ss_pred CCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 91 TPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 91 ~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+||+|.|.|. .||+.| |+..|.|.
T Consensus 76 ~~G~y~~~C~--~H~~~g-M~G~i~V~ 99 (99)
T 1byp_A 76 EKGTYKFYCA--PHAGAG-MVGKVTVN 99 (99)
T ss_dssp SCEEEEEECG--GGTTTT-CEEEEEEC
T ss_pred CCcEEEEEcC--CccccC-CEEEEEEC
Confidence 9999999999 799999 99999984
No 18
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.18 E-value=1.1e-06 Score=60.88 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=54.3
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCc---ccccccCCCCCcccccCCC-cEEEecCC
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADG---ASFKQCMKPSNVEALTSGS-DVITLATP 92 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~---~~Y~~C~~~~~~~~~~~G~-~~v~L~~~ 92 (159)
+..+|++ .++.+.++ ..++++||++ ...|++...+. ++++.+...........|. ..+++++|
T Consensus 3 ~V~m~~~~~~~~F~P~------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~~tf~~~ 76 (98)
T 2plt_A 3 TVKLGADSGALEFVPK------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYSVKLTAA 76 (98)
T ss_dssp EEEESCTTCCSSEESS------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEEEECCSC
T ss_pred EEEEecCCCCceEeCC------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEEEEeCCC
Confidence 4556653 45766543 3678899998 34788876532 1122211110011233444 37889999
Q ss_pred CeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 93 GKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 93 G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
|+|.|.|. .||..| |+..|.|.
T Consensus 77 G~y~y~C~--~H~~~g-M~G~i~V~ 98 (98)
T 2plt_A 77 GEYGYYCE--PHQGAG-MVGKIIVQ 98 (98)
T ss_dssp EEEEEECG--GGGGGT-CEEEEEEC
T ss_pred eEEEEEcC--CccccC-CeEEEEEC
Confidence 99999999 699999 99999984
No 19
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=98.17 E-value=6e-07 Score=71.09 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=49.5
Q ss_pred eeCcEE--------------cCcccEEEeCcccccccCCCC-Ccccc--cC--CCcEEEec-------------CCC-eE
Q 043934 49 RVGDRL--------------KGSHNVIRADGASFKQCMKPS-NVEAL--TS--GSDVITLA-------------TPG-KK 95 (159)
Q Consensus 49 ~vGD~L--------------~~~h~V~~V~~~~Y~~C~~~~-~~~~~--~~--G~~~v~L~-------------~~G-~~ 95 (159)
++||.| ..++.+++|++++|+.|+... +...+ +. +...+++. ++| +|
T Consensus 27 ~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~Y 106 (178)
T 1iko_P 27 QIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKDY 106 (178)
T ss_dssp CTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEEE
T ss_pred cCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCce
Confidence 458999 234789999999999998863 22122 22 23344332 467 79
Q ss_pred EEEeCCC-----------CCCCCCCceEEEEEecCCCC
Q 043934 96 WYFCGFP-----------NHCDVGNQKLTITVLAQREV 122 (159)
Q Consensus 96 YFic~~~-----------~HC~~G~mKl~I~V~~~~~~ 122 (159)
||||+-. ++|..-||||.|.|...+..
T Consensus 107 Y~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~ 144 (178)
T 1iko_P 107 YIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS 144 (178)
T ss_dssp EEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred EEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence 9999864 79987559999999766543
No 20
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.05 E-value=3.3e-06 Score=58.47 Aligned_cols=85 Identities=15% Similarity=0.237 Sum_probs=53.3
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCccc--ccccCCCCCcccccCCC-cEEEecCCC
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGAS--FKQCMKPSNVEALTSGS-DVITLATPG 93 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~~--Y~~C~~~~~~~~~~~G~-~~v~L~~~G 93 (159)
+..+|.+ .++.+.++ ..++++||++ ...|++...+... -+..+..........|. ..+++++||
T Consensus 4 ~V~~~~~~~~~~F~P~------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~tf~~~G 77 (98)
T 1pcs_A 4 TVKMGSDSGALVFEPS------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTSTFTEPG 77 (98)
T ss_dssp EEEESCTTSCSSEESS------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEECCSCE
T ss_pred EEEEecCCCccEEeCC------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEEcCCCe
Confidence 3456654 45666543 3678899999 3578887754210 00000000011223343 478899999
Q ss_pred eEEEEeCCCCCCCCCCceEEEEEe
Q 043934 94 KKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 94 ~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+|.|.|. .||..| |+..|.|+
T Consensus 78 ~y~~~C~--~H~~~g-M~G~i~V~ 98 (98)
T 1pcs_A 78 TYTYYCE--PHRGAG-MVGKVVVE 98 (98)
T ss_dssp EEEEECG--GGTTTT-CEEEEEEC
T ss_pred EEEEEcC--CccccC-CeEEEEEC
Confidence 9999999 799999 99999984
No 21
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.04 E-value=1e-05 Score=60.20 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=52.4
Q ss_pred cCCC-CCCCCCChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccc--cCC-CcEEEecCCCeEEEE
Q 043934 28 GDET-GWTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEAL--TSG-SDVITLATPGKKWYF 98 (159)
Q Consensus 28 Gg~~-GW~~~~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~--~~G-~~~v~L~~~G~~YFi 98 (159)
|.+. +..+.++ ..++++||++ ...|+|...+. +...... .+ ..| ...+++++||.|+|.
T Consensus 12 g~~g~~~~F~P~------~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~-~f~s~pGet~s~TF~~pG~y~y~ 79 (127)
T 3tu6_A 12 AADGRVMAFEPA------VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAE-TWKGKINEEITVTLSKPGVYMYQ 79 (127)
T ss_dssp CTTSCEEEEESS------EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCC-CCBCCTTCCCEEECCSCEEEEEE
T ss_pred CCCCcccEEeCC------EEEECCCCEEEEEECCCCceEEEccC-----cCCCCcc-ceecCCCCEEEEEeCCCeEEEEE
Confidence 5443 3555443 4688999999 45799987532 1111110 11 123 358999999999999
Q ss_pred eCCCCCCCCCCceEEEEEecC
Q 043934 99 CGFPNHCDVGNQKLTITVLAQ 119 (159)
Q Consensus 99 c~~~~HC~~G~mKl~I~V~~~ 119 (159)
|. .||..| |+-.|.|..+
T Consensus 80 C~--~H~~~G-M~G~I~V~~~ 97 (127)
T 3tu6_A 80 CA--PHVGMG-MIGAIVVGEP 97 (127)
T ss_dssp CT--TTGGGT-CEEEEEESSC
T ss_pred eC--CCCcCC-cEEEEEECcC
Confidence 99 599999 9999999754
No 22
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.04 E-value=1.1e-05 Score=59.75 Aligned_cols=65 Identities=23% Similarity=0.234 Sum_probs=47.0
Q ss_pred CCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccc---cCCCcEEEecCCCeEEEEeCCCCCCCCCCceEEEEE
Q 043934 45 AKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEAL---TSGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITV 116 (159)
Q Consensus 45 ~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~---~~G~~~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V 116 (159)
..++++||++ ...|+|...+. |...+. ..+ .+....+++++||.|.|.|. .||..| |+-.|.|
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~-~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~G-M~G~I~V 92 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGV-ESFKSKINESYTLTVTEPGLYGVKCT--PHFGMG-MVGLVQV 92 (123)
T ss_dssp EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTC-CCCBCCTTCCEEEEECSCEEEEEECG--GGTTTT-CEEEEEE
T ss_pred EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCc-cceecCCCCEEEEEeCCCeEEEEEeC--CCCcCC-cEEEEEE
Confidence 4688999999 45699976432 211111 112 12334789999999999999 699999 9999999
Q ss_pred ec
Q 043934 117 LA 118 (159)
Q Consensus 117 ~~ 118 (159)
..
T Consensus 93 ~~ 94 (123)
T 3erx_A 93 GD 94 (123)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 23
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=97.99 E-value=1.3e-05 Score=59.69 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=53.9
Q ss_pred cCCCC--CCCCCChhhhhcCCceeeCcEE-----cCcccEEEeCcccccccCCCCCc-ccccCC-CcEEEecCCCeEEEE
Q 043934 28 GDETG--WTTNFDYQAWAKAKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNV-EALTSG-SDVITLATPGKKWYF 98 (159)
Q Consensus 28 Gg~~G--W~~~~~Y~~Wa~~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~-~~~~~G-~~~v~L~~~G~~YFi 98 (159)
+|++| +.+.++ ..+..+||++ ...|||...+. +...+.. .....| ...+++++||.|.|.
T Consensus 10 ~g~~G~~~~F~P~------~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G~y~Y~ 78 (124)
T 3ef4_A 10 KDDAGNTMVFQPG------FVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEGLYVLK 78 (124)
T ss_dssp ECTTSCEEEEESS------EEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSEEEEEE
T ss_pred cCCCCceeEEeCC------EEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCeEEEEE
Confidence 44455 777653 5788999999 56899987532 2111111 011233 347999999999999
Q ss_pred eCCCCCCCCCCceEEEEEec
Q 043934 99 CGFPNHCDVGNQKLTITVLA 118 (159)
Q Consensus 99 c~~~~HC~~G~mKl~I~V~~ 118 (159)
|. .||..| |+-.|.|..
T Consensus 79 C~--~H~~~G-M~G~I~V~~ 95 (124)
T 3ef4_A 79 CA--PHYGMG-MVVLVQVGK 95 (124)
T ss_dssp CT--TTGGGT-CEEEEEESS
T ss_pred cC--CCCcCC-CEEEEEECC
Confidence 98 699999 999999965
No 24
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=97.68 E-value=3.6e-05 Score=58.79 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=47.0
Q ss_pred ceeeCcEE--------c---------CcccEEEeCcccccccCCC-CCcccc----cCCCcE--------------EEec
Q 043934 47 EFRVGDRL--------K---------GSHNVIRADGASFKQCMKP-SNVEAL----TSGSDV--------------ITLA 90 (159)
Q Consensus 47 ~F~vGD~L--------~---------~~h~V~~V~~~~Y~~C~~~-~~~~~~----~~G~~~--------------v~L~ 90 (159)
..++||.| . ....+++|++++|++|+.. ++...+ -.++.. +++
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF- 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF- 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC-
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee-
Confidence 45578999 1 3456899999999999886 232222 112222 334
Q ss_pred CCC-eEEEEeCC-----------CCCCCCCCceEEEEEe
Q 043934 91 TPG-KKWYFCGF-----------PNHCDVGNQKLTITVL 117 (159)
Q Consensus 91 ~~G-~~YFic~~-----------~~HC~~G~mKl~I~V~ 117 (159)
+|| .||||++- +|-|..-||||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 456 79999974 4579776699999985
No 25
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.60 E-value=0.00011 Score=57.35 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=55.5
Q ss_pred ccEEEecCCCCCCCCCChhhhhcCCce-eeCcEE------cC-------cccEEEeCccccccc---------------C
Q 043934 22 GKDHIVGDETGWTTNFDYQAWAKAKEF-RVGDRL------KG-------SHNVIRADGASFKQC---------------M 72 (159)
Q Consensus 22 a~~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~L------~~-------~h~V~~V~~~~Y~~C---------------~ 72 (159)
..++.|+.++++.+.++ ..++ +.||++ .+ .|+++..+..+++.= +
T Consensus 42 ~~~V~I~~~d~m~F~P~------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~ 115 (167)
T 3ay2_A 42 NCAATVESNDNMQFNTK------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPD 115 (167)
T ss_dssp CCEEEEEECTTSCBSCS------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTT
T ss_pred ceEEEEEeCCCceEecc------eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccccccc
Confidence 35677776667777542 3456 669964 22 399888765432210 1
Q ss_pred CCCCc---ccccCCCc-EEEec----CCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 73 KPSNV---EALTSGSD-VITLA----TPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 73 ~~~~~---~~~~~G~~-~v~L~----~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
..+.+ .....|.+ .++++ ++|+|.|+|++++|=+ | ||-.|+|.
T Consensus 116 d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-g-M~G~i~V~ 166 (167)
T 3ay2_A 116 DARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-L-MNGKVTLV 166 (167)
T ss_dssp CTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-T-SEEEEEEE
T ss_pred ccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-c-CEEEEEEe
Confidence 11111 12234433 55554 7999999999999988 9 99999986
No 26
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.58 E-value=0.00013 Score=54.22 Aligned_cols=86 Identities=17% Similarity=0.261 Sum_probs=53.4
Q ss_pred EEEecCCCCCCCCCChhhhhcCCceeeC-cEE------cC-------cccEEEeCcccccc----------------cCC
Q 043934 24 DHIVGDETGWTTNFDYQAWAKAKEFRVG-DRL------KG-------SHNVIRADGASFKQ----------------CMK 73 (159)
Q Consensus 24 ~~~VGg~~GW~~~~~Y~~Wa~~~~F~vG-D~L------~~-------~h~V~~V~~~~Y~~----------------C~~ 73 (159)
+..|+..++..+.++ ..+++.| |.+ .+ .|+++..+..+.+. =+.
T Consensus 4 ~v~i~~~d~m~F~p~------~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~ 77 (129)
T 1cuo_A 4 ETTVTSGDTMTYSTR------SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGD 77 (129)
T ss_dssp EEEEEECSSSCCSCS------EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTC
T ss_pred EEEEEeCCCceEccC------eEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccccccc
Confidence 455655556666542 4578899 855 33 39998876442210 011
Q ss_pred CCCc---ccccCCCc---EEEec---CCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 74 PSNV---EALTSGSD---VITLA---TPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 74 ~~~~---~~~~~G~~---~v~L~---~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
.+-+ .....|.+ +|+++ +||+|.|+|++++|=. | ||-.|+|.
T Consensus 78 ~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~-M~G~i~V~ 128 (129)
T 1cuo_A 78 KRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-M-MRGTLKLE 128 (129)
T ss_dssp TTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-T-SEEEEEEE
T ss_pred ccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-c-CEEEEEEe
Confidence 1111 12234433 44444 8999999999999999 9 99999986
No 27
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=97.57 E-value=5e-05 Score=57.90 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=41.5
Q ss_pred cccEEEeCcccccccCCCC-Ccccc----cCCCcEEEec-------------CCC-eEEEEeCCC-----------CCCC
Q 043934 57 SHNVIRADGASFKQCMKPS-NVEAL----TSGSDVITLA-------------TPG-KKWYFCGFP-----------NHCD 106 (159)
Q Consensus 57 ~h~V~~V~~~~Y~~C~~~~-~~~~~----~~G~~~v~L~-------------~~G-~~YFic~~~-----------~HC~ 106 (159)
...+++|++++|+.|+... +...+ -.+...+++. +|| +||||++-. |-|.
T Consensus 48 ~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~~YY~Ists~g~~~gl~~~~gG~C~ 127 (140)
T 2vsm_B 48 YYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQ 127 (140)
T ss_dssp BEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTEEEEEECCCCBSGGGTTCCBSHHHH
T ss_pred EEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCceEEEecCCCCccccccccCCccc
Confidence 5678999999999998863 22122 1222333322 466 688998743 5798
Q ss_pred CCCceEEEEEec
Q 043934 107 VGNQKLTITVLA 118 (159)
Q Consensus 107 ~G~mKl~I~V~~ 118 (159)
.-||||.|.|..
T Consensus 128 t~~mkl~i~V~~ 139 (140)
T 2vsm_B 128 TRAMKILMKVGH 139 (140)
T ss_dssp HSCCEEEEEETC
T ss_pred cceEEEEEEecC
Confidence 767999999964
No 28
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.54 E-value=0.00011 Score=54.33 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=42.2
Q ss_pred CCceeeCcEE------cCcccEEEeCccc----ccccCCCCCcccccCCC-cEEEecCCCeEEEEeCCCCCCCCCCceEE
Q 043934 45 AKEFRVGDRL------KGSHNVIRADGAS----FKQCMKPSNVEALTSGS-DVITLATPGKKWYFCGFPNHCDVGNQKLT 113 (159)
Q Consensus 45 ~~~F~vGD~L------~~~h~V~~V~~~~----Y~~C~~~~~~~~~~~G~-~~v~L~~~G~~YFic~~~~HC~~G~mKl~ 113 (159)
..++++||++ ...|+|...+..+ |+. .....|. ..+++++||+|.|.|+. |. | |+-.
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~g~~~~~s-------~~l~pG~t~~~tF~~~G~y~y~C~~--H~--g-M~G~ 128 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--F-MRGK 128 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--T-CEEE
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCCcccccc-------cccCCCCEEEEEcCCCEEEEEEeCC--Cc--C-CEEE
Confidence 4678899999 3468887654221 110 1123343 36888999999999997 76 8 9999
Q ss_pred EEEe
Q 043934 114 ITVL 117 (159)
Q Consensus 114 I~V~ 117 (159)
|.|+
T Consensus 129 I~V~ 132 (132)
T 3c75_A 129 VIVE 132 (132)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 29
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=97.51 E-value=0.0003 Score=55.56 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred cccEEEecCCCCCCCCCChhhhh-cC--CceeeCcEE---------------cCcccEEEeCcccccccCCCCCc-ccc-
Q 043934 21 LGKDHIVGDETGWTTNFDYQAWA-KA--KEFRVGDRL---------------KGSHNVIRADGASFKQCMKPSNV-EAL- 80 (159)
Q Consensus 21 ~a~~~~VGg~~GW~~~~~Y~~Wa-~~--~~F~vGD~L---------------~~~h~V~~V~~~~Y~~C~~~~~~-~~~- 80 (159)
.+..+.| =|+.. | ..+. .+ ...++||.| ..+..+++|++++|++|+.++.. ..+
T Consensus 30 ~~~r~~V----yWNSs-N-p~F~~~~~~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~ 103 (177)
T 2x11_B 30 VADRYAV----YWNSS-N-PRFQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWE 103 (177)
T ss_dssp CCSEEEE----ECSTT-C-HHHHTSCCEEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEE
T ss_pred cCccCce----EcCCC-C-cCccCCCceEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEE
Confidence 5666666 59874 1 1111 12 346689999 13556889999999999875432 112
Q ss_pred -c-----CCCcEEEec-------------CCC-eEEEEeCCCCCCCCC-CceEEEEEecCCC
Q 043934 81 -T-----SGSDVITLA-------------TPG-KKWYFCGFPNHCDVG-NQKLTITVLAQRE 121 (159)
Q Consensus 81 -~-----~G~~~v~L~-------------~~G-~~YFic~~~~HC~~G-~mKl~I~V~~~~~ 121 (159)
+ .|+.++++. +|| +||||++-.++=..| -|||.|.|.+...
T Consensus 104 C~~P~~p~~~~kftikFQ~FSP~p~G~EF~pG~~YYyISTS~~~~~g~~ClrLkV~V~p~~~ 165 (177)
T 2x11_B 104 CNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNS 165 (177)
T ss_dssp ECCTTCSSSSCEEEEECCSSCSSTTCCCCCTTEEEEEEEEESSCCCSSSCCEEEEEECCTTT
T ss_pred eCCCCCCCCCeEEEEEEEEcCCCCCCccccCCCeEEEEecCCCCCCCCcceEEEEEEEcCCC
Confidence 1 134444321 467 699998642211111 1899999986653
No 30
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.39 E-value=0.00033 Score=48.43 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=51.3
Q ss_pred EEEecCC-CCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCcccccccC-------CCCCcccccCCC-cEEE
Q 043934 24 DHIVGDE-TGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGASFKQCM-------KPSNVEALTSGS-DVIT 88 (159)
Q Consensus 24 ~~~VGg~-~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~~Y~~C~-------~~~~~~~~~~G~-~~v~ 88 (159)
+..+|.+ .+..+.+. ..+++.||++ ...|++..-... . .+. ..........|. ..++
T Consensus 4 ~V~~~~~~~~~~f~p~------~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~~~i~pG~~~~~~ 75 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA------NVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQLMFSPGESYEIT 75 (105)
T ss_dssp EEEESCTTCCSCEESS------EEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEeecCCccEEeCC------EEEEcCCCEEEEEECCCCCCeEEEeCCC-C-CcccccccccccccccccCCCCeEEEE
Confidence 3456653 45666442 3578899998 357888764321 1 110 000001123333 3667
Q ss_pred e---cCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 89 L---ATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 89 L---~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+ +++|+|+|.|. .|+..| |+-.|.|.
T Consensus 76 f~~~~~~G~y~y~C~--~H~~~G-M~G~i~V~ 104 (105)
T 3cvb_A 76 FSSDFPAGTYTYYCA--PHRGAG-MVGKITVE 104 (105)
T ss_dssp ECTTSCSEEEEEECT--TTGGGT-CEEEEEEC
T ss_pred EecCCCCeeEEEEeC--CchhcC-CEEEEEEc
Confidence 7 78999999999 699999 99999985
No 31
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.28 E-value=0.00012 Score=51.11 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=25.7
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
.++.++||+|.|.|. .||..| |+-.|.|+
T Consensus 72 ~~t~~~~G~Y~y~C~--~H~~~g-M~G~i~Ve 100 (100)
T 4hci_A 72 TVKPKSAGTYELICR--YHLLKG-MEGKVIVK 100 (100)
T ss_dssp EECCCSCEEEEEECT--TTGGGT-CEEEEEEC
T ss_pred EEecccCceEEEECc--cccCCC-CEEEEEEC
Confidence 567789999999997 599999 99999985
No 32
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.13 E-value=0.00093 Score=47.23 Aligned_cols=78 Identities=24% Similarity=0.274 Sum_probs=49.9
Q ss_pred cccEEEecCCCCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCccc----ccccCCCCCcccccCCC-cEEEe
Q 043934 21 LGKDHIVGDETGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGAS----FKQCMKPSNVEALTSGS-DVITL 89 (159)
Q Consensus 21 ~a~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~~----Y~~C~~~~~~~~~~~G~-~~v~L 89 (159)
.++++.|.-. ++.+.++ ..++++||++ ...|+|...+... |+. .....|. ..+++
T Consensus 18 ~~~~~~V~~~-~~~F~P~------~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf 83 (106)
T 1id2_A 18 PADAVVVGIE-KMKYLTP------EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITF 83 (106)
T ss_dssp CTTCEEEEEE-TTEESSS------EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEE
T ss_pred CCccEEEEEE-ecEEeCC------EEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEe
Confidence 4455655432 3554432 4678899999 3468887643220 111 1123343 36889
Q ss_pred cCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 90 ATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 90 ~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
++||.|.|.|.. |. | |+..|.|.
T Consensus 84 ~~~G~y~~~C~~--H~--~-M~G~I~V~ 106 (106)
T 1id2_A 84 NEAGSYDYFCTP--HP--F-MRGKVIVE 106 (106)
T ss_dssp CSCEEEEEECSS--CT--T-CEEEEEEC
T ss_pred CCCEEEEEEeCC--CC--C-CEEEEEEC
Confidence 999999999997 77 8 99999884
No 33
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.06 E-value=0.00064 Score=50.46 Aligned_cols=86 Identities=20% Similarity=0.356 Sum_probs=51.7
Q ss_pred EEEecCCCCCCCCCChhhhhcCCce-eeCcEE------cC-------cccEEEeCccccccc----------------CC
Q 043934 24 DHIVGDETGWTTNFDYQAWAKAKEF-RVGDRL------KG-------SHNVIRADGASFKQC----------------MK 73 (159)
Q Consensus 24 ~~~VGg~~GW~~~~~Y~~Wa~~~~F-~vGD~L------~~-------~h~V~~V~~~~Y~~C----------------~~ 73 (159)
+..|+.++++.+.++ ..++ +.||++ .+ .|+++..+..+.+.= +.
T Consensus 4 ~v~v~~~d~m~F~p~------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~ 77 (128)
T 1nwp_A 4 KVTVDSTDQMSFNTK------DIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGD 77 (128)
T ss_dssp EEEEEECTTSCBSCS------EEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTC
T ss_pred EEEEEeCCCccEecC------EEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhcccccccccccc
Confidence 455666666777552 3456 679964 22 399887654322100 00
Q ss_pred CCCc---ccccCCCc-EEEec----CCCe-EEEEeCCCCCCCCCCceEEEEEe
Q 043934 74 PSNV---EALTSGSD-VITLA----TPGK-KWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 74 ~~~~---~~~~~G~~-~v~L~----~~G~-~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
.+-+ .....|.+ .++++ ++|. |.|+|++++|=. | ||-.|+|.
T Consensus 78 ~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-g-M~G~i~V~ 128 (128)
T 1nwp_A 78 ARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-M-MKGTVTLK 128 (128)
T ss_dssp TTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-G-SEEEEEEC
T ss_pred chhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-C-CEEEEEEC
Confidence 1101 12344433 45443 5776 999999999999 9 99999884
No 34
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.06 E-value=0.00096 Score=46.92 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=50.2
Q ss_pred cccEEEecCCCCCCCCCChhhhhcCCceeeCcEE------cCcccEEEeCccc----ccccCCCCCcccccCCC-cEEEe
Q 043934 21 LGKDHIVGDETGWTTNFDYQAWAKAKEFRVGDRL------KGSHNVIRADGAS----FKQCMKPSNVEALTSGS-DVITL 89 (159)
Q Consensus 21 ~a~~~~VGg~~GW~~~~~Y~~Wa~~~~F~vGD~L------~~~h~V~~V~~~~----Y~~C~~~~~~~~~~~G~-~~v~L 89 (159)
.+.++.|.- .+|.+.+. ..++++||++ ...|+|...+..+ ++.. ....|. ..+++
T Consensus 17 ~a~~~~V~~-~~~~F~P~------~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~-------~~~pG~~~~~tf 82 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYETP------ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP-------MMKKEQAYSLTF 82 (105)
T ss_dssp CTTCEEEEE-ETTEESSS------EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC-------CBCTTEEEEEEE
T ss_pred CCcCEEEEE-eecEEcCC------EEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc-------ccCCCCEEEEEe
Confidence 455565543 34665442 4678899999 3479887643211 2221 122333 36888
Q ss_pred cCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 90 ATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 90 ~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+++|+|+|.|.. |- | |+-.|.|.
T Consensus 83 ~~~G~y~y~C~~--H~--g-M~G~i~V~ 105 (105)
T 2ov0_A 83 TEAGTYDYHCTP--HP--F-MRGKVVVE 105 (105)
T ss_dssp CSCEEEEEECSS--CT--T-CEEEEEEC
T ss_pred CCCEEEEEEeCC--CC--C-CEEEEEEC
Confidence 999999999997 54 8 99999884
No 35
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=96.97 E-value=0.0041 Score=46.06 Aligned_cols=30 Identities=30% Similarity=0.560 Sum_probs=24.4
Q ss_pred EEEec--CCCe-EEEEeCCCCCCCCCCceEEEEEe
Q 043934 86 VITLA--TPGK-KWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 86 ~v~L~--~~G~-~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+|+.+ ++|. |.|+|++++|=. | ||-.|+|.
T Consensus 96 tf~~~~l~~G~~Y~f~C~~pgH~~-g-M~G~i~V~ 128 (129)
T 2ccw_A 96 TFDVSKIAAGENYAYFCSFPGHWA-M-MKGTLKLG 128 (129)
T ss_dssp EEEGGGSCTTCCEEEECCSTTGGG-T-SEEEEEEC
T ss_pred EEeccccCCCceEEEEeCCCChhH-c-CEEEEEEe
Confidence 34444 5765 999999999988 9 99999985
No 36
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.85 E-value=0.0013 Score=52.07 Aligned_cols=89 Identities=15% Similarity=0.340 Sum_probs=52.5
Q ss_pred cccEEEecCCCCCCCCC-ChhhhhcC--CceeeCcEE----------------cCcccEEEeCcccccccCCCC-Ccccc
Q 043934 21 LGKDHIVGDETGWTTNF-DYQAWAKA--KEFRVGDRL----------------KGSHNVIRADGASFKQCMKPS-NVEAL 80 (159)
Q Consensus 21 ~a~~~~VGg~~GW~~~~-~Y~~Wa~~--~~F~vGD~L----------------~~~h~V~~V~~~~Y~~C~~~~-~~~~~ 80 (159)
++..+.| =|+... -+. ..+ ...++||.| ..+..+++|++++|++|+..+ +...+
T Consensus 28 sa~rh~V----yWNSsNp~F~--~~~y~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~ 101 (182)
T 3czu_B 28 AADRHTV----FWNSSNPKFR--NEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRW 101 (182)
T ss_dssp -CCEEEE----ECSTTCGGGT--TSCCEEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEE
T ss_pred hccccce----EEcCCCcccc--CCCceEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEE
Confidence 5566766 488631 111 112 355689999 123568899999999998763 22121
Q ss_pred ------c-CCCcEE--------------EecCCC-eEEEEeCC----CCCCCCCCceEEEEEecCC
Q 043934 81 ------T-SGSDVI--------------TLATPG-KKWYFCGF----PNHCDVGNQKLTITVLAQR 120 (159)
Q Consensus 81 ------~-~G~~~v--------------~L~~~G-~~YFic~~----~~HC~~G~mKl~I~V~~~~ 120 (159)
. .|+.+| ++ +|| .||||++- ++.| ||+.|.|....
T Consensus 102 ~C~~P~~~~~p~kftikFQ~FSP~p~GlEF-~pG~dYY~ISts~~~~gg~C----mrL~v~V~~k~ 162 (182)
T 3czu_B 102 QCNRPSAKHGPEKLSEKFQRFTPFTLGKEF-KEGHSYYYISKPIHQHEDRC----LRLKVTVSGKI 162 (182)
T ss_dssp EECCTTCTTSCCEEEEECCSCCSCTTSCCC-CTTCEEEEEEEESSSCCCSC----CEEEEEECC--
T ss_pred EeCCCCCCCCCcEEEEEEEEcCCCCCCeeE-eCCCeEEEEEccCCCCCCcc----eEEEEEEecCC
Confidence 1 133333 33 466 79999963 4555 88888886554
No 37
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=96.84 E-value=0.0033 Score=46.59 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=27.1
Q ss_pred cCCCc-EEEec----CCCe-EEEEeCCCCCCCCCCceEEEEEe
Q 043934 81 TSGSD-VITLA----TPGK-KWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 81 ~~G~~-~v~L~----~~G~-~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
..|.+ .++++ ++|. |.|+|++++|=. | ||-.|+|.
T Consensus 87 ~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-g-M~G~i~V~ 127 (128)
T 2iaa_C 87 GGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-I-MKGTIELG 127 (128)
T ss_dssp CTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-T-SEEEEEEC
T ss_pred CCCCEEEEEEeccccCCCceEEEEECCCChhH-C-CEEEEEEe
Confidence 44433 45544 6784 999999999999 9 99999985
No 38
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=96.78 E-value=0.0021 Score=47.03 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=43.0
Q ss_pred CCceeeCcEE-----cCcccEEEeCcccccccCCCCCcccc--cCC-CcEEEecCCCeEEEEeCCCCCCCCCCceEEEEE
Q 043934 45 AKEFRVGDRL-----KGSHNVIRADGASFKQCMKPSNVEAL--TSG-SDVITLATPGKKWYFCGFPNHCDVGNQKLTITV 116 (159)
Q Consensus 45 ~~~F~vGD~L-----~~~h~V~~V~~~~Y~~C~~~~~~~~~--~~G-~~~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V 116 (159)
..++.+||++ ...|+|...+. +-..... .+ ..| ...+++++||.|.|.|.. |+. |+-.|.|
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~-~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~---M~G~I~V 90 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAE-AFKSKINENYKVTFTAPGVYGVKCTP--HPF---MVGVVQV 90 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCC-CCBCCTTCCEEEEECSCEEEEEEETT--EEE---EEEEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcc-eeecCCCCEEEEEeCCCEEEEEEeCC--Ccc---CEEEEEE
Confidence 4678899999 34799877541 1111111 11 123 347899999999999997 775 9999999
Q ss_pred ec
Q 043934 117 LA 118 (159)
Q Consensus 117 ~~ 118 (159)
..
T Consensus 91 ~~ 92 (122)
T 2ux6_A 91 GD 92 (122)
T ss_dssp SS
T ss_pred eC
Confidence 74
No 39
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.71 E-value=0.002 Score=48.91 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=45.4
Q ss_pred ceeeCcEE---------------cCcccEEEeCcccccccCCCCCc-ccc--c-----CCCcEEEec-------------
Q 043934 47 EFRVGDRL---------------KGSHNVIRADGASFKQCMKPSNV-EAL--T-----SGSDVITLA------------- 90 (159)
Q Consensus 47 ~F~vGD~L---------------~~~h~V~~V~~~~Y~~C~~~~~~-~~~--~-----~G~~~v~L~------------- 90 (159)
..++||.| ..+..+++|++++|++|+..+.. ..+ + .|+..+++.
T Consensus 24 ~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~EF 103 (138)
T 1shx_A 24 DVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFEF 103 (138)
T ss_dssp EECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCceee
Confidence 45689999 13556889999999999875432 122 1 134444321
Q ss_pred CCC-eEEEEeCCC-----CCCCCCCceEEEEEecCC
Q 043934 91 TPG-KKWYFCGFP-----NHCDVGNQKLTITVLAQR 120 (159)
Q Consensus 91 ~~G-~~YFic~~~-----~HC~~G~mKl~I~V~~~~ 120 (159)
+|| .||||++-. +-| |||.|.|.+..
T Consensus 104 ~pG~~YY~ISts~~~~~g~~C----lrL~V~V~p~~ 135 (138)
T 1shx_A 104 RPGREYFYISSAIPDNGRRSC----LKLKVFVRPTN 135 (138)
T ss_dssp CTTEEEEEEEEESSCCSCSCC----CEEEEEECCTT
T ss_pred cCCCeEEEEEcCCCCCCCCce----eEEEEEEEccc
Confidence 467 689998632 335 89999997553
No 40
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=96.43 E-value=0.0061 Score=45.95 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=41.0
Q ss_pred ceeeCcEE----------------cCcccEEEeCcccccccCCCC-Ccccc------c-CCCcEEEec------------
Q 043934 47 EFRVGDRL----------------KGSHNVIRADGASFKQCMKPS-NVEAL------T-SGSDVITLA------------ 90 (159)
Q Consensus 47 ~F~vGD~L----------------~~~h~V~~V~~~~Y~~C~~~~-~~~~~------~-~G~~~v~L~------------ 90 (159)
...+||.| ..+..++.|++++|++|+..+ +...+ . .|+.++++.
T Consensus 23 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~E 102 (132)
T 3hei_B 23 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKE 102 (132)
T ss_dssp EECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSCC
T ss_pred EeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCee
Confidence 45689999 134568899999999998764 32222 1 234444321
Q ss_pred -CCC-eEEEEeCCCCCCCCCCceEEEEE
Q 043934 91 -TPG-KKWYFCGFPNHCDVGNQKLTITV 116 (159)
Q Consensus 91 -~~G-~~YFic~~~~HC~~G~mKl~I~V 116 (159)
+|| .|||||+-..|=...=+||.|.|
T Consensus 103 F~pG~~YY~ISt~~~~~~~~cl~l~v~v 130 (132)
T 3hei_B 103 FKEGHSYYYISKPIHQHEDRCLRLKVTV 130 (132)
T ss_dssp CCTTCEEEEEEEESSCCCCSCCEEEEEE
T ss_pred ecCCCcEEEEEccCCCCCCcceEEEEEE
Confidence 456 68889873222111115666665
No 41
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=95.67 E-value=0.0099 Score=41.76 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=39.4
Q ss_pred CCceeeCcEE------c--CcccEEEeCcccccccCCCCCcccccCCCc-E--EEecCCCeEEEEeCCCCCCCCCCceEE
Q 043934 45 AKEFRVGDRL------K--GSHNVIRADGASFKQCMKPSNVEALTSGSD-V--ITLATPGKKWYFCGFPNHCDVGNQKLT 113 (159)
Q Consensus 45 ~~~F~vGD~L------~--~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~-~--v~L~~~G~~YFic~~~~HC~~G~mKl~ 113 (159)
..+++.||.+ . ..|++.. ...+ . ......|.. . |+.++||+|+|.|.. ||..++|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i-~~~~-----~---~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSI-DAFG-----V---QEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEE-GGGT-----E---EEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEE-cCCC-----c---eeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 3578889988 1 2566543 2211 0 112233433 3 444899999999997 8865559999
Q ss_pred EEEe
Q 043934 114 ITVL 117 (159)
Q Consensus 114 I~V~ 117 (159)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 42
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.64 E-value=0.02 Score=44.23 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=22.3
Q ss_pred CceeeCcEE------c----------CcccEEEeCcccccccCCCC
Q 043934 46 KEFRVGDRL------K----------GSHNVIRADGASFKQCMKPS 75 (159)
Q Consensus 46 ~~F~vGD~L------~----------~~h~V~~V~~~~Y~~C~~~~ 75 (159)
...++||.| . .+..+++|++++|++|+...
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~ 77 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQ 77 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTT
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCC
Confidence 346689999 1 12347899999999998865
No 43
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=93.73 E-value=0.079 Score=39.25 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=24.7
Q ss_pred cEEEecCCCeEEEEeCC---CCCCCCCCceEEEEEe
Q 043934 85 DVITLATPGKKWYFCGF---PNHCDVGNQKLTITVL 117 (159)
Q Consensus 85 ~~v~L~~~G~~YFic~~---~~HC~~G~mKl~I~V~ 117 (159)
..+++++||.|+|.|.. .+| .+ |+..|.|.
T Consensus 102 ~~~~~~~~G~y~~~C~e~CG~~H--~~-M~g~v~V~ 134 (135)
T 2cua_A 102 VRYTFKRPGEYRIICNQYCGLGH--QN-MFGTIVVK 134 (135)
T ss_dssp EEEECCSCEEEEEECCSCCSTTS--TT-CEEEEEEE
T ss_pred EEEEcCCCEEEEEECcccCCCCc--CC-CEEEEEEE
Confidence 36899999999999986 334 67 99999986
No 44
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=91.89 E-value=0.17 Score=43.31 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=45.9
Q ss_pred CCceeeCcEE--------cCcccEEEeCcccccccCCCCCcccccCCCcEEEecCCCeEEEEeCCCCCCCCCCceEEEEE
Q 043934 45 AKEFRVGDRL--------KGSHNVIRADGASFKQCMKPSNVEALTSGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITV 116 (159)
Q Consensus 45 ~~~F~vGD~L--------~~~h~V~~V~~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V 116 (159)
..++..||++ ...|++..-.......|.. ..-.+-...|+++++|+++|.|.+.+|=..| |+..|.|
T Consensus 56 ~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i----~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~G-m~G~i~V 130 (447)
T 2dv6_A 56 TLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN----GKNASSTFSFVASKVGEFNYYCSIAGHRQAG-MEGNIQV 130 (447)
T ss_dssp CEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC----STTBEEEEEEECCSCEEEEEECCSTTHHHHT-CEEEEEE
T ss_pred eEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec----CCCCeEEEEEEcCCCEEEEEEeCCCChhhCC-CEEEEEE
Confidence 4567788877 2337764422222222321 1111122356778999999999998888889 9999999
Q ss_pred ecCCC
Q 043934 117 LAQRE 121 (159)
Q Consensus 117 ~~~~~ 121 (159)
....+
T Consensus 131 ~~~~~ 135 (447)
T 2dv6_A 131 LPGNR 135 (447)
T ss_dssp ESSCC
T ss_pred eCCcc
Confidence 86654
No 45
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=89.38 E-value=0.36 Score=37.23 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=25.1
Q ss_pred EEEecCCCeEEEEeCC-CCCCCCCCceEEEEEe
Q 043934 86 VITLATPGKKWYFCGF-PNHCDVGNQKLTITVL 117 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~-~~HC~~G~mKl~I~V~ 117 (159)
.++.++||.||+.|+. -|+-..+ |+..|.|+
T Consensus 136 ~~~~~kpG~y~g~Cse~CG~~Hs~-M~g~V~V~ 167 (168)
T 3s8f_B 136 RYTFKRPGEYRIICNQYCGLGHQN-MFGTIVVK 167 (168)
T ss_dssp EEECCSCEEEEEECCSCCSTTGGG-CEEEEEEE
T ss_pred EEEeCCCEEEEEECCcCCCCCcCC-CEEEEEEe
Confidence 6789999999999995 3444456 99999986
No 46
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.46 E-value=0.88 Score=41.96 Aligned_cols=31 Identities=23% Similarity=0.636 Sum_probs=25.5
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCC--ceEEEEEec
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGN--QKLTITVLA 118 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~--mKl~I~V~~ 118 (159)
.|+.++||.|+|.|+. +|-.+| |+..|.|++
T Consensus 605 tFtadkPGvY~y~CSE--~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 605 TFVADKPGLHWYYCSW--FCHALHMEMVGRMMVEP 637 (638)
T ss_dssp EEECCSCEEEEEECCS--CCSTTCTTCEEEEEEEC
T ss_pred EEEcCCCEEEEEECCC--cCCCCcccceEEEEEec
Confidence 5788999999999996 565443 999999974
No 47
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=85.08 E-value=0.88 Score=33.60 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=17.9
Q ss_pred CCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 91 TPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 91 ~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
++|+|-|+|+ +|= | ||-.|+|.
T Consensus 104 ~~G~y~f~C~--gH~--~-M~G~v~V~ 125 (125)
T 3fsa_A 104 EGEQYMFFCA--AHA--A-MKGTLTLK 125 (125)
T ss_dssp --CCEEEECS--SST--T-CEEEEEEC
T ss_pred CCccEEEEcC--CCC--C-cEEEEEEC
Confidence 6799999999 786 8 99999873
No 48
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=76.17 E-value=2.8 Score=38.26 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=25.4
Q ss_pred EEEecCCCeEEEEeCC---CCCCCCCCceEEEEEecC
Q 043934 86 VITLATPGKKWYFCGF---PNHCDVGNQKLTITVLAQ 119 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~---~~HC~~G~mKl~I~V~~~ 119 (159)
.|+.++||+|+|.|.. ..| .| |+..|.|.+.
T Consensus 560 ~Fta~~pGtY~yhC~e~Cg~~H--~g-M~G~IiV~p~ 593 (595)
T 1fwx_A 560 TFVAANPGVYWYYCQWFCHALH--ME-MRGRMLVEPK 593 (595)
T ss_dssp EEECCSCEEEEEECCSCCSTTC--TT-CEEEEEEECC
T ss_pred EEECCCCEEEEEECCCCCCCCc--cC-CEEEEEEEcC
Confidence 6788999999999984 245 48 9999999753
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=70.74 E-value=3.3 Score=33.94 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=29.5
Q ss_pred EEEecCCCeEEEEeCCCCCC-CCCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFPNHC-DVGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC-~~G~mKl~I~V~~~~ 120 (159)
.++.+.||.|+|.|....|+ ..| |.-.+.|....
T Consensus 286 lv~~~~pG~y~~~~h~~~~~~~~G-~~~~~~V~~~~ 320 (336)
T 1oe1_A 286 LYTFKQPGVYAYLNHNLIEAFELG-AAGHIKVEGKW 320 (336)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTS-CEEEEEEESCC
T ss_pred EEEcCCCceEEEEechhhccccCC-CeEEEEECCCC
Confidence 57788999999999988898 899 99999997554
No 50
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=68.53 E-value=3.4 Score=37.00 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 91 TPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 91 ~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+||.|||..+...-|++|+.|+.|.|+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (491)
T 3l6w_A 465 ESGDYFMTASTTELCNDNNLRIHVHVD 491 (491)
T ss_pred CCCceEecCChHHHHhCCceeEEEEeC
Confidence 589999999999999999669999884
No 51
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=59.97 E-value=3.4 Score=33.37 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=28.4
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCCceEEEEEec
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGNQKLTITVLA 118 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~~ 118 (159)
.++.+.||.+.|-|-+..|=+.| |.-.++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~G-M~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELG-WMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTT-CEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcC-CCEEEEEeC
Confidence 45678999999999999999999 999999864
No 52
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=59.35 E-value=16 Score=29.82 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=27.8
Q ss_pred EEEecCCCeEEEEeCCCC----CCCCCCceEEEEEecCCC
Q 043934 86 VITLATPGKKWYFCGFPN----HCDVGNQKLTITVLAQRE 121 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~----HC~~G~mKl~I~V~~~~~ 121 (159)
.|+++.+|++||-|...+ |=..| |.-.+.|....+
T Consensus 117 ~f~~~~~Gt~~yH~h~~~~~~~~~~~G-l~G~liV~~~~~ 155 (336)
T 1oe1_A 117 RFKADRSGTFVYHCAPEGMVPWHVVSG-MSGTLMVLPRDG 155 (336)
T ss_dssp EEECCSCEEEEEECCCTTCHHHHHHTT-CEEEEEEECTTC
T ss_pred EEECCCCeEEEEecCCCCchhHHHhCC-CeEEEEEecCcC
Confidence 577789999999999753 44679 999999986543
No 53
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=57.78 E-value=17 Score=29.60 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=28.2
Q ss_pred EEEecCCCeEEEEeCCCC-----CCCCCCceEEEEEecCCC
Q 043934 86 VITLATPGKKWYFCGFPN-----HCDVGNQKLTITVLAQRE 121 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~-----HC~~G~mKl~I~V~~~~~ 121 (159)
.|+.+.+|++||-|-..+ |=..| |.-.+.|....+
T Consensus 116 ~f~~~~~Gt~~yH~h~~~~~~~~~~~~G-l~G~~iV~~~~~ 155 (333)
T 1mzy_A 116 RFKATRAGAFVYHCAPGGPMIPWHVVSG-MAGCIMVLPRDG 155 (333)
T ss_dssp EEECCSCEEEEEECCCSTTHHHHHHHTT-CEEEEEEECTTC
T ss_pred EEECCCCEEEEEeecCCcccchhhhhCC-CEEEEEEccCcC
Confidence 577789999999998764 66789 999999985543
No 54
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=55.75 E-value=6.6 Score=32.12 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=29.7
Q ss_pred EEEecCCCeEEEEeCCCCCC-CCCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFPNHC-DVGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC-~~G~mKl~I~V~~~~ 120 (159)
.++.+.||.++|.|-...|+ +.| |.-.+.|....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~G-m~~~~~v~~~~ 320 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKG-ATAHVLVEGEW 320 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTC-CEEEEEEESCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCC-CEEEEEEcCCC
Confidence 57788999999999999999 999 99999997643
No 55
>2b1y_A Hypothetical protein ATU1913; NEW fold, structural genomics, PSI, PR structure initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: b.156.1.1
Probab=54.02 E-value=3.2 Score=29.85 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=49.3
Q ss_pred CceeeCcEE----cCcccEEEeCcccccccCCCCC----cccccCCCcEEEecCCCeEEEEeCCCCCCCCCCceEEEEEe
Q 043934 46 KEFRVGDRL----KGSHNVIRADGASFKQCMKPSN----VEALTSGSDVITLATPGKKWYFCGFPNHCDVGNQKLTITVL 117 (159)
Q Consensus 46 ~~F~vGD~L----~~~h~V~~V~~~~Y~~C~~~~~----~~~~~~G~~~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~ 117 (159)
+.+.-||++ +..-||..++.++|..=.-... ...++.++..++....|..|.+=+..+|+.. -+-+|+|.
T Consensus 14 ~~l~~Gd~V~V~cs~~~nVrLmd~~Nf~~~~~g~~~~~~GG~~~~~P~~itVP~sG~W~vvID~~g~~~~--~~~SI~vi 91 (104)
T 2b1y_A 14 KELRAGTTLEISLSSVNNVRLMTGANFQRFTELLDFKYLGGVAKKSPIRIAVPETMHWHLIIDAEGHSGL--AESSVKML 91 (104)
T ss_dssp CCCCTTCCCCCCCSSSCCCCCCCHHHHHHHHHHTTCCCSCCCCCSSSCCCCCCSSSCCCCCCCCTTSSSC--CCCCCCCC
T ss_pred hhccCCCEEEEEeCCceeEEEcCchhhhhhhccCceeEeccccccCCEEEECCCCceEEEEEecCCcCCc--ceeeEEEe
Confidence 366789999 7778899999888763221111 1234666778888888988887777777763 66666666
Q ss_pred cCC
Q 043934 118 AQR 120 (159)
Q Consensus 118 ~~~ 120 (159)
+++
T Consensus 92 pa~ 94 (104)
T 2b1y_A 92 PAQ 94 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 56
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=48.11 E-value=2.3 Score=34.68 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCCceEEEEEecC
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGNQKLTITVLAQ 119 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~~~ 119 (159)
.++.+.||.+.|-|-+..|-..| |...+.|...
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~G-M~~~~~V~~~ 301 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAG-MQAYIDIKNC 301 (306)
T ss_dssp -------CCCCCBCCSTTTGGGT-CBCCC-----
T ss_pred EEEcCCCeEEEEEeCChHHHhcC-CeEEEEEecC
Confidence 56778899999999999999999 9999888754
No 57
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=48.10 E-value=7.1 Score=26.95 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=9.3
Q ss_pred CCCCceEEEEEecCCCCCCCCCCCCCCCch
Q 043934 106 DVGNQKLTITVLAQREVSSPAPSPSDLQSA 135 (159)
Q Consensus 106 ~~G~mKl~I~V~~~~~~p~p~psp~~~~~~ 135 (159)
..| ..+.+.+..+.++|.|+|.|++.+++
T Consensus 63 ~~g-~~i~lv~~~~~~~~~~~~~~~~~s~s 91 (106)
T 3m62_B 63 KDG-DQVVFMVSQKKSTKTKVTERDPNSSS 91 (106)
T ss_dssp CTT-CEEEEECCC-----------------
T ss_pred CCC-CEEEEEEcCCCCCCCCCCCCCCCCCC
Confidence 567 88888887666555554444443333
No 58
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=44.25 E-value=11 Score=30.58 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=28.0
Q ss_pred cCCCeEEEEeCCCCCCCCCCceEEEEEecCCCC
Q 043934 90 ATPGKKWYFCGFPNHCDVGNQKLTITVLAQREV 122 (159)
Q Consensus 90 ~~~G~~YFic~~~~HC~~G~mKl~I~V~~~~~~ 122 (159)
+.||.+.|-|-+..|=+.| |...+.|.....+
T Consensus 260 dnPG~w~~HCHi~~H~~~G-M~~~f~V~~~~~~ 291 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMG-MAGMFLVRNADGT 291 (299)
T ss_dssp TCSEEEEEEECSHHHHHTT-CEEEEEEECTTSC
T ss_pred CCCeeEEEEcCCHHHHhcC-CeEEEEEECCCCC
Confidence 4689999999999999999 9999999877653
No 59
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=43.92 E-value=26 Score=27.71 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=23.4
Q ss_pred EEEecCCCeEEEEeCCCCCCCCC--CceEEEEEe
Q 043934 86 VITLATPGKKWYFCGFPNHCDVG--NQKLTITVL 117 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G--~mKl~I~V~ 117 (159)
.++.++||.||..|+. .|-.| .|++.|.|.
T Consensus 84 ~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 84 HLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 5778999999999985 56432 388888887
No 60
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=41.99 E-value=47 Score=26.50 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=28.3
Q ss_pred EEEecCCCeEEEEeCCC---CCCCCCCceEEEEEecCCC
Q 043934 86 VITLATPGKKWYFCGFP---NHCDVGNQKLTITVLAQRE 121 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~---~HC~~G~mKl~I~V~~~~~ 121 (159)
.|+.+.+|++||=|-.. .|=..| |.-.+.|....+
T Consensus 120 ~f~~~~~Gt~~yH~H~~~~~~~~~~G-l~G~liV~~~~~ 157 (288)
T 3gdc_A 120 EFDATPFGTHLYHCHQSPLAPHIAKG-LYGGFIVEPKEG 157 (288)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTT-CEEEEEEECSSC
T ss_pred EEEcCCCccEEEEecCcchHHHHhCc-CeEEEEEeCCcc
Confidence 57788999999999875 355689 999999986654
No 61
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=41.50 E-value=21 Score=29.11 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=27.4
Q ss_pred EEEecCCCeEEEEeCCC-CCCCCCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFP-NHCDVGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~-~HC~~G~mKl~I~V~~~~ 120 (159)
.++.+.||.++|.|... .|=..| |.-.+.|....
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~G-m~~~~~V~~~~ 326 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELG-AAGHFKVTGEW 326 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTS-CEEEEEEESCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCC-CEEEEEECCCC
Confidence 46788999999999986 365889 98888887643
No 62
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=40.75 E-value=18 Score=30.49 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=29.3
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~~~~ 120 (159)
.|..+.||.++|-|-...|=..| |...+.|....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~G-m~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHG-LVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGT-CCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccC-CEEEEEEeCCC
Confidence 46778999999999999998889 99999997654
No 63
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=40.51 E-value=18 Score=34.66 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=31.7
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCCceEEEEEecCCCCC
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGNQKLTITVLAQREVS 123 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~~~~~~p 123 (159)
.++.+.||.|+|.|....|=..| |.-.+.|......+
T Consensus 325 lv~~~~pG~y~i~~h~~~h~~~G-m~~~~~V~~~~~~~ 361 (1065)
T 2j5w_A 325 YMVAQNPGEWMLSCQNLNHLKAG-LQAFFQVQECNKSS 361 (1065)
T ss_dssp EEECCSCEEEEEEECSHHHHHTT-CEEEEEEECSCCCC
T ss_pred EEEeCCCeeEEEEecCcchhhCC-CEEEEEEecCCCcc
Confidence 57788899999999999999999 99999998765543
No 64
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=39.83 E-value=27 Score=29.04 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=24.3
Q ss_pred EEEecCCCeEEEEeCCCCCCCCC--CceEEEEEecC
Q 043934 86 VITLATPGKKWYFCGFPNHCDVG--NQKLTITVLAQ 119 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G--~mKl~I~V~~~ 119 (159)
.++.++||.||..|+. .|-.| .|++.|.|.+.
T Consensus 232 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~ 265 (298)
T 3hb3_B 232 WFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQ 265 (298)
T ss_dssp EEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECH
T ss_pred EEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcH
Confidence 5789999999999994 56433 37888887654
No 65
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=39.31 E-value=20 Score=28.54 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=29.0
Q ss_pred EEec---CCCeEEEEeCCCCCCCCCCceEEEEEecCCC
Q 043934 87 ITLA---TPGKKWYFCGFPNHCDVGNQKLTITVLAQRE 121 (159)
Q Consensus 87 v~L~---~~G~~YFic~~~~HC~~G~mKl~I~V~~~~~ 121 (159)
++.+ .||.++|-|-+..|=..| |...+.|.....
T Consensus 232 ~~~~~~~npG~w~~HCH~~~H~~~G-M~g~~~V~~~~~ 268 (276)
T 3kw8_A 232 IIAGEGVGAGAWMYHCHVQSHSDMG-MVGLFLVKKPDG 268 (276)
T ss_dssp EETTTTTCSEEEEEEECSHHHHHTT-CEEEEEEECTTS
T ss_pred EEeccCCCCCeEEEECCCchHhhCC-CeEEEEEeCCCC
Confidence 4454 599999999999999999 999999987654
No 66
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=39.30 E-value=21 Score=29.22 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=28.5
Q ss_pred EEEecCCCeEEEEeCCCCCC-CCCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFPNHC-DVGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC-~~G~mKl~I~V~~~~ 120 (159)
.|+.+.||.++|.|....|| ..| |.-.+.+....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g-~~a~l~~~g~~ 309 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKG-ALGQLKVEGAE 309 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSS-CEEEEEEESCC
T ss_pred EEEeCCCeEEEEEeccccccccCC-cEEEEEECCCC
Confidence 56778899999999999998 788 98888887553
No 67
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=38.04 E-value=17 Score=30.17 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=27.8
Q ss_pred cCCCeEEEEeCCCCCCCCCCceEEEEEecCCC
Q 043934 90 ATPGKKWYFCGFPNHCDVGNQKLTITVLAQRE 121 (159)
Q Consensus 90 ~~~G~~YFic~~~~HC~~G~mKl~I~V~~~~~ 121 (159)
+.||.++|-|-+..|=..| |...+.|.....
T Consensus 279 ~~pG~w~~HCHi~~H~~~G-M~g~~~V~~~~~ 309 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMG-MVGLFLVKKPDG 309 (343)
T ss_dssp TCSEEEEEEECSHHHHHTT-CEEEEEEECTTS
T ss_pred CCCeeEEEeCCCHHHHhcc-CcEEEEEecCCC
Confidence 5799999999999999999 999999986654
No 68
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=36.08 E-value=16 Score=29.12 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=23.2
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCC--ceEEEEEec
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGN--QKLTITVLA 118 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~--mKl~I~V~~ 118 (159)
.++.++||.||..|+. .|-.|| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5778999999999984 675543 677776653
No 69
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=34.05 E-value=30 Score=29.17 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=29.0
Q ss_pred EEEecCCCeEEEEeCCCCCC-CCCCceEEEEEecCCC
Q 043934 86 VITLATPGKKWYFCGFPNHC-DVGNQKLTITVLAQRE 121 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC-~~G~mKl~I~V~~~~~ 121 (159)
.++.+++|.|+|.|....|+ ..| |...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g-~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKG-ALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTS-CEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccC-ceEEEEecCCCC
Confidence 47788999999999988887 778 988888876654
No 70
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=34.03 E-value=22 Score=28.89 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=23.6
Q ss_pred EEEecCCCeEEEEeCCCCCCCCC--CceEEEEEec
Q 043934 86 VITLATPGKKWYFCGFPNHCDVG--NQKLTITVLA 118 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G--~mKl~I~V~~ 118 (159)
.++.++||.||..|+. .|-.| .|++.|.|.+
T Consensus 214 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 214 WFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 5789999999999994 67543 3777777754
No 71
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}
Probab=33.70 E-value=12 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.539 Sum_probs=14.9
Q ss_pred CCCeEEEEeCCCCCC-CCCCceEEEEEecCCC
Q 043934 91 TPGKKWYFCGFPNHC-DVGNQKLTITVLAQRE 121 (159)
Q Consensus 91 ~~G~~YFic~~~~HC-~~G~mKl~I~V~~~~~ 121 (159)
..|.|| |.+...- ..+ .++.+.|...+.
T Consensus 86 Dsg~Y~--C~~~~~~~~~~-~~v~L~V~~~~~ 114 (124)
T 2nms_A 86 DADTYW--CGIEKTGNDLG-VTVQVTIDPAPV 114 (124)
T ss_dssp GCEEEE--EEEEETTEEEE-EEEEEEEECCC-
T ss_pred HCEEEE--EEEEcCCCCcc-EEEEEEEeCCCc
Confidence 446655 5553111 345 677777876544
No 72
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=30.48 E-value=31 Score=33.14 Aligned_cols=72 Identities=21% Similarity=0.093 Sum_probs=46.4
Q ss_pred CCceeeCcEE----------cCcccEEEeC------cccccccCCCCCcccccCCCcEEEecCCCeEEEEeCCCCCCCCC
Q 043934 45 AKEFRVGDRL----------KGSHNVIRAD------GASFKQCMKPSNVEALTSGSDVITLATPGKKWYFCGFPNHCDVG 108 (159)
Q Consensus 45 ~~~F~vGD~L----------~~~h~V~~V~------~~~Y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~HC~~G 108 (159)
...+..||++ .-.|++.+-. -..++.|... ...+-...++.+.+|++++-|-+..|=..|
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~----pg~~~t~~~~~~~~Gt~~~h~h~~~~~~~G 708 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLF----PQTSLTLHMWPDTEGTFNVECLTTDHYTGG 708 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEEC----TTCEEEEEECCCSCEEEEEEECSHHHHHTT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeec----CCceEEEEEecCCCeEEEEecCCCcccCCC
Confidence 3567788888 2345665532 1223334321 112222356777899999999999888999
Q ss_pred CceEEEEEecCCC
Q 043934 109 NQKLTITVLAQRE 121 (159)
Q Consensus 109 ~mKl~I~V~~~~~ 121 (159)
|+..+.|.....
T Consensus 709 -m~g~~~V~~~~~ 720 (1065)
T 2j5w_A 709 -MKQKYTVNQCRR 720 (1065)
T ss_dssp -CEEEEEEECCSC
T ss_pred -cEEEEEEcCCcc
Confidence 999999976543
No 73
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=28.72 E-value=28 Score=31.10 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=28.7
Q ss_pred EEEecCCCeEEEEeCCCCCCCCCCceEEEEEec
Q 043934 86 VITLATPGKKWYFCGFPNHCDVGNQKLTITVLA 118 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G~mKl~I~V~~ 118 (159)
.++.+.||.+.|-|-+..|-..| |...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~G-m~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAG-MQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTT-CEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccc-cccceeeec
Confidence 46778899999999999999999 999999964
No 74
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=27.59 E-value=33 Score=27.95 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=26.8
Q ss_pred EEEecCCCeEEEEeCCC---CCCCCCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFP---NHCDVGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~---~HC~~G~mKl~I~V~~~~ 120 (159)
.|+.+.+|++||-|... .|=..| |.-.+.|....
T Consensus 122 ~f~~~~~Gt~wyH~h~~~~~~~~~~G-l~G~~iV~~~~ 158 (327)
T 1kbv_A 122 SFKALQPGLYIYHCAVAPVGMHIANG-MYGLILVEPKE 158 (327)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTT-CEEEEEEECTT
T ss_pred EEECCCCeEEEEEeCCCChhhhhhcc-eEEEEEEecCC
Confidence 56778999999999762 355679 99999998654
No 75
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=27.11 E-value=30 Score=28.97 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=23.2
Q ss_pred EEEecCCCeEEEEeCCCCCCCCC--CceEEEEEe
Q 043934 86 VITLATPGKKWYFCGFPNHCDVG--NQKLTITVL 117 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~~G--~mKl~I~V~ 117 (159)
.++.++||.||..|+. .|-.| .|++.|.|.
T Consensus 194 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv 225 (315)
T 1fft_B 194 HLIANEPGTYDGISAS--YSGPGFSGMKFKAIAT 225 (315)
T ss_dssp EEECCSCBCCEEBCCS--CCSTTTTTCCEECCBC
T ss_pred EEecCCCeEEEEeccc--cchhhHHhccceEEEe
Confidence 5789999999999984 67543 377777776
No 76
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=26.56 E-value=78 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=28.0
Q ss_pred EEEecCCCeEEEEeCCCCCCC------CCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFPNHCD------VGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~------~G~mKl~I~V~~~~ 120 (159)
.++.+.||.+.|-|-+..|-. .| |.-.|.+....
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~G-m~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGG-IMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCB-SEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCC-CEEEEEECCCC
Confidence 467889999999999999998 46 77888886654
No 77
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=25.03 E-value=47 Score=26.86 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCCCCCCCCCceEEEEEecCCC
Q 043934 91 TPGKKWYFCGFPNHCDVGNQKLTITVLAQRE 121 (159)
Q Consensus 91 ~~G~~YFic~~~~HC~~G~mKl~I~V~~~~~ 121 (159)
.||.+.|-|-+..|=..| |.-.++|.....
T Consensus 245 nPG~w~~HCHi~~H~~~G-M~~~f~V~~~d~ 274 (313)
T 3tas_A 245 GAGAWMYHCHVQSHSDMG-MVGLFLVKKPDG 274 (313)
T ss_dssp CSEEEEEEECSHHHHHTT-CEEEEEEECTTC
T ss_pred CCEeEEEEeCChHHHHCC-CeEEEEEECCCC
Confidence 589999999999999999 999999986653
No 78
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=23.35 E-value=71 Score=20.95 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=26.5
Q ss_pred CCceeeCcEE----cCcccEEEeCcccccccCCCCCc--ccccCCCcEEEec
Q 043934 45 AKEFRVGDRL----KGSHNVIRADGASFKQCMKPSNV--EALTSGSDVITLA 90 (159)
Q Consensus 45 ~~~F~vGD~L----~~~h~V~~V~~~~Y~~C~~~~~~--~~~~~G~~~v~L~ 90 (159)
..+|.+||++ +|.+.-+++.-..++ ..+++ -.|.+| +..+|.
T Consensus 7 ~~~~~vgd~VmaRW~Gd~~yYparI~Si~---s~~~~Y~V~fKdg-T~e~L~ 54 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPGSVLYYEVQVTSYD---DASHLYTVKYKDG-TELALK 54 (66)
T ss_dssp SSSSCSSCEEEEECTTSSCEEEEEEEEEE---TTTTEEEEEETTS-CEEEEE
T ss_pred ceEeecCCEEEEEcCCCccceEEEEEEec---cCCceEEEEecCC-CEEeec
Confidence 4678899988 777777776444444 45565 346774 445554
No 79
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=23.31 E-value=33 Score=28.94 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=26.8
Q ss_pred EEEecCCCeEEEEeC---CCCCCCCCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCG---FPNHCDVGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~---~~~HC~~G~mKl~I~V~~~~ 120 (159)
.|+.+.+|+++|-|- ...|=..| |.-.+.|....
T Consensus 112 ~f~~~~~Gt~~yH~H~~~~~~~~~~G-l~G~~iv~~~~ 148 (442)
T 2zoo_A 112 NFKALNPGLYIYHCATAPVGMHIANG-MYGLILVEPKE 148 (442)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTT-CEEEEEEECTT
T ss_pred EEEcCCCeEEEEecCCCChHHHHhCc-cEEEEEEeCCC
Confidence 577789999999994 34566689 99999998654
No 80
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=22.96 E-value=1.1e+02 Score=24.91 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=27.0
Q ss_pred EEEecCCCeEEEEeCCCCCCC------CCCceEEEEEecCC
Q 043934 86 VITLATPGKKWYFCGFPNHCD------VGNQKLTITVLAQR 120 (159)
Q Consensus 86 ~v~L~~~G~~YFic~~~~HC~------~G~mKl~I~V~~~~ 120 (159)
.|+.+.||.++|-|-...||. .| |.-.|.+....
T Consensus 240 ~~~~~~pG~w~~hch~~~H~~~~~~~~~g-m~a~l~~~g~~ 279 (339)
T 2zwn_A 240 IIEADNPGRFIFHDHVDTHVTAGGKHPGG-PITVIEYDGVP 279 (339)
T ss_dssp EEECCSCSEEEEEECCGGGSCBTTBSSCS-SEEEEEETTSC
T ss_pred EEEeCCCeeEEEEEechhhcccccccCCC-cEEEEEECCCC
Confidence 467889999999999999963 56 88788886554
No 81
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=21.27 E-value=1e+02 Score=20.34 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCceeeCcEE----cCcccEEEeCcccccccCCCCCc--ccccCCCcEEEecC
Q 043934 45 AKEFRVGDRL----KGSHNVIRADGASFKQCMKPSNV--EALTSGSDVITLAT 91 (159)
Q Consensus 45 ~~~F~vGD~L----~~~h~V~~V~~~~Y~~C~~~~~~--~~~~~G~~~v~L~~ 91 (159)
..+|.+||++ .|.+.-+++.-..++ ..+++ -.|.+ .+..+|.+
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSit---s~~~~Y~VkfKd-gT~e~L~~ 58 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHD---STSQLYTVKYKD-GTELELKE 58 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEE---TTTTEEEEECTT-SCEEEEET
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEec---cCCceEEEEecC-CCEEEech
Confidence 4678899998 676666666444444 45565 34677 44556653
Done!