BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043937
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 72/104 (69%), Positives = 92/104 (88%)
Query: 12 MAFFSKVGNILRQTAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAF 71
MAF SK GNIL+QT K+++ + S+S+PS++QAIRCMSSSKLF+GG++Y+MD++SLREAF
Sbjct: 1 MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAF 60
Query: 72 AKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ 115
KYG V + R+ILDRETGRSRGFGFVTF++ E ASSAIQALDG+
Sbjct: 61 TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGR 104
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 7/104 (6%)
Query: 12 MAFFSKVGNILRQTAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAF 71
MAF SKVG + QT+ ++ SS+ Q+IRCMSSSK+FVGGISY+ D+ LREAF
Sbjct: 1 MAFLSKVGRLFSQTS-SHVTASSSM-----LQSIRCMSSSKIFVGGISYSTDEFGLREAF 54
Query: 72 AKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ 115
+KYG V +A+II+DRETGRSRGF FVTF++ EEAS+A+Q LDGQ
Sbjct: 55 SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQ 97
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Query: 12 MAFFSKVGNILRQTAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAF 71
MAF +K+G +LRQ IS ++ S+ ++R MS+ KLF+GG+S+ DD SLR+AF
Sbjct: 1 MAFCNKLGGLLRQN----ISSNGNVPVTSMLGSLRLMST-KLFIGGLSWGTDDASLRDAF 55
Query: 72 AKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ 115
A +G V +A++I+DRETGRSRGFGFV F+ A++AI +DG+
Sbjct: 56 AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Query: 12 MAFFSKVGNILRQTAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAF 71
MAF +K+ ILRQ +S S+ S+ ++R MSS KLFVGG+S+ DD+SL++AF
Sbjct: 1 MAFCNKLSGILRQG----VSQSSNGPVTSMLGSLRYMSS-KLFVGGLSWGTDDSSLKQAF 55
Query: 72 AKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ 115
+G V EA +I DRETGRSRGFGFV+FS + A++AI+ +DG+
Sbjct: 56 TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGK 99
>sp|Q9FZ84|RBG6_ARATH Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis
thaliana GN=RBG6 PE=2 SV=1
Length = 155
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 69/110 (62%), Gaps = 12/110 (10%)
Query: 12 MAFFSKVGNILRQTAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAF 71
M FS+ GNI RQ + S ++ Q ++ SK+FVGG+S + D L+EAF
Sbjct: 4 MGLFSRAGNIFRQPRALQASN-------AMLQGNLSLTPSKIFVGGLSPSTDVELLKEAF 56
Query: 72 AKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA-----LDGQV 116
+G + +A ++LDRE+G SRGFGFVT+ ++E A++A+QA LDG++
Sbjct: 57 GSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRI 106
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+ FVGG+ + DD SL+ AF+KYG V +++II DRETGRSRGFGFVTF++ E AI+A
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 112 LDGQ 115
++GQ
Sbjct: 67 MNGQ 70
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 55/77 (71%), Gaps = 5/77 (6%)
Query: 39 PSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVT 98
P +Y+ + +++VG + +++D+ L + F+++G V EAR++ DRETGRSRGFGFVT
Sbjct: 237 PRVYEP-----AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 291
Query: 99 FSTVEEASSAIQALDGQ 115
S V+E + AI ALDGQ
Sbjct: 292 MSDVDELNEAISALDGQ 308
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 44/60 (73%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110
+KLFVG ++Y+++ +L F + G V A +I +RET +SRGFGFVT S+V+EA +A++
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 69/104 (66%), Gaps = 9/104 (8%)
Query: 12 MAFFSKVGNILRQTAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAF 71
MAF +K+G +Q +S S+ ++R MS+ KL++GG+S D++SL++AF
Sbjct: 1 MAFCTKLGGHWKQGVNVPVS--------SMLGSLRYMST-KLYIGGLSPGTDEHSLKDAF 51
Query: 72 AKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ 115
+ + V EAR++ ++ TGRSRG+GFV F + + A+SAI A++GQ
Sbjct: 52 SSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQ 95
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+S++ ++ SL + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGK 70
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+S++ ++ SL + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGK 70
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+++N D+ +L + F+ +G ++E ++ DRET RSRGFGF+TF+ E AS A++A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGE 70
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+++VG I +++DD L + F+++G V AR++ DRE+GRSRGFGFVT S+ E S AI
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 112 LDGQV 116
LDGQ
Sbjct: 252 LDGQT 256
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 42/61 (68%)
Query: 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAI 109
+KLFVG + Y++D L + F + G V A +I +RET RSRGFGFVT STVEEA A+
Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
Query: 110 Q 110
+
Sbjct: 156 E 156
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+S++ ++ +L + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGK 70
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+S++ ++ +L + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGK 70
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+S++ ++ +L + F+KYG ++E ++ DRET RSRGFGFVTF +++A A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGK 70
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 47/66 (71%)
Query: 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAI 109
S +++VG I + +DD L + F+++G V AR++ DRETGRSRGFGFVT ++ E S AI
Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288
Query: 110 QALDGQ 115
LDGQ
Sbjct: 289 ANLDGQ 294
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110
+KLFVG + Y++D L F + G V A +I +R+T +SRGFGFVT STVEEA A++
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 50/64 (78%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+++N D+ +L + F+ +G ++E ++ DRET RSRGFGF+TF+ E AS A++A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGE 70
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 47/64 (73%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+ FVGG+++ DD +L AFA+YG V +++II DRETGRSRGFGFVTF + AI+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 112 LDGQ 115
++GQ
Sbjct: 69 MNGQ 72
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 27 GKRISCESSISNPSIYQAIRC--MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIIL 84
G++++ + S +A R S +++VG + +++D + L + F+++G V AR++
Sbjct: 123 GRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVS 182
Query: 85 DRETGRSRGFGFVTFSTVEEASSAIQALDGQV 116
DRETGRSRGFGFVT S+ E + AI ALDGQ
Sbjct: 183 DRETGRSRGFGFVTMSSESEVNDAIAALDGQT 214
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110
+KLFVG + Y++D L F G V A +I +RET RSRGFGFVT STVEEA A++
Sbjct: 55 AKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 114
Query: 111 ALDG------QVTFNASC 122
L+G Q+T N +
Sbjct: 115 LLNGYDMDGRQLTVNKAA 132
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+++ +++ L +AF KYG ++E ++ DRET RSRGFGFVTF V++A A+ A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 112 LDGQ 115
++G+
Sbjct: 66 MNGK 69
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+ FVGG+++ DD +L AF++YG V +++II DRETGRSRGFGFVTF + AI+
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 112 LDGQ 115
++GQ
Sbjct: 69 MNGQ 72
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+S++ D+ L F+KYG + E ++ DRET RSRGFGFVTF E+A A+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 112 LDGQV 116
++G+
Sbjct: 67 MNGKT 71
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG++++ ++ SL + F+KYG ++E ++ DRET RSRGFGFVTF ++A A+ A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 112 LDGQV 116
++G+
Sbjct: 66 MNGKA 70
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 54/66 (81%)
Query: 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSA 108
SS++++VG +S+ +DD +L+E F++ G V +A+++ DR++GRSRGFGFVT+S+ +E + A
Sbjct: 206 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDA 265
Query: 109 IQALDG 114
I +L+G
Sbjct: 266 IDSLNG 271
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%)
Query: 41 IYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFS 100
+ + R KLFVG + +++D +L F + G V +I D+ +GRSRGFGFVT S
Sbjct: 78 VAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMS 137
Query: 101 TVEEASSAIQALDG 114
T EE +A Q +G
Sbjct: 138 TKEEVEAAEQQFNG 151
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+++N D+ +L + F+ +G ++E ++ DRET RSRGFGF+TF+ E AS ++A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGE 70
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 48/64 (75%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+ FVGG+++ +D SL +AF+++G + +++II DRETGRSRGFGFVTF + AI+
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 112 LDGQ 115
++GQ
Sbjct: 67 MNGQ 70
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 54/66 (81%)
Query: 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSA 108
SS++++VG +S+ +DD +L+E F++ G V +A+++ DR++GRSRGFGFVT+S+ +E + A
Sbjct: 205 SSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDA 264
Query: 109 IQALDG 114
I +L+G
Sbjct: 265 IDSLNG 270
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 41 IYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFS 100
+ + R KLFVG + +++D +L F + G V +I D+ TGRSRGFGFVT S
Sbjct: 77 VAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMS 136
Query: 101 TVEEASSAIQALDG 114
T EE +A Q +G
Sbjct: 137 TKEEVEAAEQQFNG 150
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D+SLRE F K+G + + ++ D +T RSRGFGFVT+S VEE +A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 96 RPHKVDGRV 104
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTF 99
++ K+FVGGI + ++ +LR+ F KYG + ++ DR++G+ RGF FVTF
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D+SLRE F K+G + + ++ D +T RSRGFGFVT+S VEE +A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 96 RPHKVDGRV 104
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTF 99
++ K+FVGGI + ++ +LR+ F KYG + ++ DR++G+ RGF FVTF
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D+SLRE F K+G + + ++ D +T RSRGFGFVT+S VEE +A+ A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 96 RPHKVDGRV 104
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTF 99
++ K+FVGGI + ++ +LR+ F KYG + ++ DR++G+ RGF FVTF
Sbjct: 123 LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 50/64 (78%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110
++++VG +S+ +DD +L F++ G V EAR+I DR++GRS+GFGFVT+ + +E +AI+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 111 ALDG 114
+LDG
Sbjct: 264 SLDG 267
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVG + +N+D L + F G V +I D+ TGRSRGFGFVT S+V E +A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 112 LDG 114
+G
Sbjct: 152 FNG 154
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 46/64 (71%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLFVGG+++ + SL + F+KYG V E ++ DRE+ RSRGFGFVTF E+A A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 112 LDGQ 115
++G+
Sbjct: 67 MNGK 70
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110
++++VG +++ +D ++L F++ G V +A+++ DR++GRSRGFGFVT+S+ EE ++AI+
Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
Query: 111 ALDGQVTFNASCV 123
+LDG V N +
Sbjct: 248 SLDG-VDLNGRAI 259
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
K+FVG + ++ D +L E F + G V +I D+ TGRSRGFGFVT S+ EE +A Q
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 112 LDG 114
+G
Sbjct: 148 FNG 150
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110
++++VG +++ +D ++L F++ G V +A+++ DR++GRSRGFGFVT+S+ EE ++AI+
Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253
Query: 111 ALDGQVTFNASCV 123
+LDG V N +
Sbjct: 254 SLDG-VDLNGRAI 265
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
K+FVG + ++ D +L E F + G V +I D+ TGRSRGFGFVT S+ EE +A Q
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 112 LDG 114
+G
Sbjct: 148 FNG 150
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTF---STVEEAS 106
S K+F+GG++++ +++LRE F KYG V + +I+ D TGRSRGFGF++F S+V+E
Sbjct: 158 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217
Query: 107 SAIQALDGQV 116
LDG+V
Sbjct: 218 KTQHILDGKV 227
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 41/61 (67%)
Query: 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAI 109
+ K+FVGGI ++ E F+++G + +A+++LD++TG+SRGFGFVT+ + +
Sbjct: 242 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVC 301
Query: 110 Q 110
Q
Sbjct: 302 Q 302
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+ FVGG+++ D+ SL AF+++G + +++II DRETGRSRGFGFVTF + AI+
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 112 LDGQ 115
++GQ
Sbjct: 69 MNGQ 72
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 49/64 (76%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+ FVGG+++ ++ +L +AFA +G V ++++I DRETGRSRGFGFVTFS+ + AI+
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 112 LDGQ 115
++G+
Sbjct: 69 MNGK 72
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110
++L+VG +S+ +DD +L F + G V EAR+I DR++GRS+GFGFVT S+ +E AI
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 111 ALDG 114
+L+G
Sbjct: 317 SLNG 320
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFST 101
KLFVG +S+N+D L + F G V +I D+ TGRSRGFGFVT ST
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D+SLRE F ++G + + ++ D +T RSRGFGFVT+S VEE +++ A
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 88 RPHKVDGRV 96
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTF 99
++ K+FVGGI + ++ LR+ F YG + ++ DR++G+ RGF FVTF
Sbjct: 115 LTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTF 166
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
+ FVGG+++ + SL AFA YG + ++++I DRETGRSRGFGFVTFS+ AI+
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 112 LDGQ 115
++G+
Sbjct: 69 MNGK 72
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D+SLRE F ++G + + ++ D +T RSRGFGFVT+S VEE +++ A
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 88 RPHKVDGRV 96
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTF 99
++ K+FVGGI + ++ LR+ YG + ++ DR++G+ RGF FVTF
Sbjct: 115 LTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTF 166
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 65 NSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ 115
NSL AF+ YG V E++IILDRET RSRGFGFVTFST E SAI+ ++G+
Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGK 51
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D SLR F ++G + + ++ D T RSRGFGFVT++TVEE +A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 75 RPHKVDGRV 83
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 35/52 (67%)
Query: 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTF 99
++ K+FVGGI + +++ LR+ F +YG + I+ DR +G+ RGF FVTF
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 53 LFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQAL 112
++VG +SY++ + SL FA+YG V ++ +DRETGR RGFGFV + E ++AI+AL
Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEAL 62
Query: 113 DG 114
DG
Sbjct: 63 DG 64
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 45/64 (70%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG++ D+ SL F KYG ++E ++ DRET +SRGF F+TF + +A +A++
Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68
Query: 112 LDGQ 115
++G+
Sbjct: 69 MNGK 72
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D SLR F ++G + + ++ D T RSRGFGFVT++TVEE +A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 75 RPHKVDGRV 83
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 23 RQTAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARI 82
+ G+ + + ++S + ++ K+FVGGI + +++ LR+ F +YG + I
Sbjct: 77 HKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEI 136
Query: 83 ILDRETGRSRGFGFVTFS 100
+ DR +G+ RGF FVTF
Sbjct: 137 MTDRGSGKKRGFAFVTFD 154
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D SLR F ++G + + ++ D T RSRGFGFVT++TVEE +A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 75 RPHKVDGRV 83
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 27 GKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDR 86
G+ + + ++S + ++ K+FVGGI + +++ LR+ F +YG + I+ DR
Sbjct: 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Query: 87 ETGRSRGFGFVTFS 100
+G+ RGF FVTF
Sbjct: 141 GSGKKRGFAFVTFD 154
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D SLR F ++G + + ++ D T RSRGFGFVT++TVEE +A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 75 RPHKVDGRV 83
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 27 GKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDR 86
G+ + + ++S + ++ K+FVGGI + +++ LR+ F +YG + I+ DR
Sbjct: 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Query: 87 ETGRSRGFGFVTFS 100
+G+ RGF FVTF
Sbjct: 141 GSGKKRGFAFVTFD 154
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQA 111
KLF+GG+S+ D SLR F ++G + + ++ D T RSRGFGFVT++TVEE +A+ A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 112 ----LDGQV 116
+DG+V
Sbjct: 75 RPHKVDGRV 83
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 27 GKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDR 86
G+ + + ++S + ++ K+FVGGI + +++ LR+ F +YG + I+ DR
Sbjct: 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140
Query: 87 ETGRSRGFGFVTFS 100
+G+ RGF FVTF
Sbjct: 141 GSGKKRGFAFVTFD 154
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFS 100
+K+FVGG+ Y+ D SLR+ F +G ++EA +I DR+TG+SRG+GFVT S
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMS 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,285,946
Number of Sequences: 539616
Number of extensions: 1324726
Number of successful extensions: 5312
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 3804
Number of HSP's gapped (non-prelim): 1460
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)