Query 043937
Match_columns 123
No_of_seqs 111 out of 1892
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 16:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.3E-23 1.1E-27 126.0 10.9 75 48-122 17-91 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 4.9E-22 1.7E-26 122.9 11.1 75 48-122 4-78 (110)
3 2la6_A RNA-binding protein FUS 99.9 4.8E-21 1.6E-25 116.0 11.4 75 48-122 11-93 (99)
4 3md1_A Nuclear and cytoplasmic 99.9 5.8E-21 2E-25 111.9 10.6 73 50-122 1-73 (83)
5 2do4_A Squamous cell carcinoma 99.9 9.3E-21 3.2E-25 114.8 11.5 77 45-122 12-88 (100)
6 3p5t_L Cleavage and polyadenyl 99.9 1.1E-21 3.7E-26 117.0 7.1 72 51-122 2-75 (90)
7 1x5u_A Splicing factor 3B subu 99.9 6.8E-21 2.3E-25 116.3 10.6 76 47-122 12-87 (105)
8 3bs9_A Nucleolysin TIA-1 isofo 99.9 8.2E-21 2.8E-25 112.1 10.4 75 48-122 4-78 (87)
9 2cqc_A Arginine/serine-rich sp 99.9 8.2E-21 2.8E-25 113.8 10.5 75 48-122 13-87 (95)
10 4f25_A Polyadenylate-binding p 99.9 4.9E-21 1.7E-25 119.1 9.8 72 49-122 4-75 (115)
11 3mdf_A Peptidyl-prolyl CIS-tra 99.9 5.5E-21 1.9E-25 112.4 9.4 75 48-122 5-79 (85)
12 1p27_B RNA-binding protein 8A; 99.9 9.8E-21 3.4E-25 115.8 10.9 76 47-122 20-95 (106)
13 2e5h_A Zinc finger CCHC-type a 99.8 9.8E-21 3.4E-25 113.4 10.0 76 47-122 13-88 (94)
14 2dgo_A Cytotoxic granule-assoc 99.8 2E-20 6.7E-25 116.0 11.7 76 47-122 12-87 (115)
15 2cq0_A Eukaryotic translation 99.8 1.3E-20 4.5E-25 114.7 10.7 76 47-122 12-87 (103)
16 2dnz_A Probable RNA-binding pr 99.8 1.6E-20 5.6E-25 112.6 10.8 75 48-122 3-77 (95)
17 2cpz_A CUG triplet repeat RNA- 99.8 1.7E-20 5.9E-25 116.3 10.9 76 47-122 22-97 (115)
18 2khc_A Testis-specific RNP-typ 99.8 1.3E-20 4.5E-25 117.3 10.3 77 47-123 37-113 (118)
19 1x4e_A RNA binding motif, sing 99.8 4E-21 1.4E-25 113.2 7.4 76 48-123 3-78 (85)
20 1s79_A Lupus LA protein; RRM, 99.8 8.5E-21 2.9E-25 116.0 9.1 74 47-122 8-81 (103)
21 2x1f_A MRNA 3'-END-processing 99.8 1.4E-20 4.7E-25 113.3 9.9 73 50-122 2-74 (96)
22 2cph_A RNA binding motif prote 99.8 2.1E-20 7.1E-25 114.4 10.7 76 47-122 12-89 (107)
23 2jrs_A RNA-binding protein 39; 99.8 2.6E-20 8.8E-25 114.7 11.1 75 48-122 24-98 (108)
24 3n9u_C Cleavage and polyadenyl 99.8 1.4E-20 4.9E-25 122.9 10.4 74 49-122 54-129 (156)
25 3ns6_A Eukaryotic translation 99.8 3E-21 1E-25 117.3 6.6 73 50-122 6-85 (100)
26 2lkz_A RNA-binding protein 5; 99.8 2.4E-21 8.2E-26 116.9 6.1 75 48-122 7-87 (95)
27 2lxi_A RNA-binding protein 10; 99.8 1E-21 3.5E-26 117.6 4.3 73 50-122 1-75 (91)
28 2dgs_A DAZ-associated protein 99.8 2.7E-20 9.4E-25 112.5 10.6 74 48-122 8-81 (99)
29 2div_A TRNA selenocysteine ass 99.8 2.5E-20 8.4E-25 112.7 10.4 74 48-121 7-81 (99)
30 1whw_A Hypothetical protein ri 99.8 1.5E-20 5E-25 113.7 9.4 75 48-122 6-80 (99)
31 2d9p_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 112.6 11.3 74 47-122 12-85 (103)
32 1oo0_B CG8781-PA, drosophila Y 99.8 1.7E-20 5.8E-25 115.5 9.6 76 47-122 23-98 (110)
33 2dnh_A Bruno-like 5, RNA bindi 99.8 6E-20 2.1E-24 112.1 11.9 74 48-122 13-89 (105)
34 2dnm_A SRP46 splicing factor; 99.8 1.5E-20 5.1E-25 114.5 9.2 75 48-122 11-85 (103)
35 2kxn_B Transformer-2 protein h 99.8 2E-20 6.8E-25 118.6 10.0 77 47-123 43-119 (129)
36 3s7r_A Heterogeneous nuclear r 99.8 3.3E-20 1.1E-24 109.7 9.9 75 47-122 8-82 (87)
37 1u6f_A Tcubp1, RNA-binding pro 99.8 4.3E-20 1.5E-24 118.0 11.1 77 46-122 38-114 (139)
38 2ywk_A Putative RNA-binding pr 99.8 3.5E-20 1.2E-24 111.2 10.0 74 48-122 14-87 (95)
39 1x4h_A RNA-binding protein 28; 99.8 4E-20 1.4E-24 113.8 10.4 75 48-122 13-93 (111)
40 2dhg_A TRNA selenocysteine ass 99.8 5.5E-20 1.9E-24 112.0 11.0 75 48-123 7-83 (104)
41 2krb_A Eukaryotic translation 99.8 1.3E-20 4.5E-25 110.2 7.6 72 50-123 1-79 (81)
42 2cqp_A RNA-binding protein 12; 99.8 1.7E-20 5.8E-25 113.2 8.2 75 48-122 13-87 (98)
43 3ulh_A THO complex subunit 4; 99.8 6.4E-20 2.2E-24 112.3 10.8 74 48-122 27-100 (107)
44 2cpf_A RNA binding motif prote 99.8 3E-20 1E-24 112.1 9.1 75 48-122 3-80 (98)
45 1x5s_A Cold-inducible RNA-bind 99.8 2.3E-20 7.9E-25 113.4 8.7 75 48-122 10-84 (102)
46 2m2b_A RNA-binding protein 10; 99.8 1.3E-20 4.6E-25 119.5 7.8 76 47-123 20-101 (131)
47 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.3E-20 4.5E-25 114.4 7.5 75 47-123 16-91 (100)
48 1x5t_A Splicing factor 3B subu 99.8 1.8E-20 6.1E-25 112.6 7.9 74 49-122 4-78 (96)
49 2dgp_A Bruno-like 4, RNA bindi 99.8 2.5E-20 8.7E-25 113.9 8.7 76 47-122 10-88 (106)
50 2cpe_A RNA-binding protein EWS 99.8 4.2E-20 1.4E-24 114.2 9.6 76 47-122 12-95 (113)
51 3ucg_A Polyadenylate-binding p 99.8 4.9E-20 1.7E-24 109.2 9.4 72 50-122 6-77 (89)
52 4a8x_A RNA-binding protein wit 99.8 3E-20 1E-24 109.9 8.4 75 48-122 2-77 (88)
53 2cq4_A RNA binding motif prote 99.8 1.8E-20 6.1E-25 116.1 7.8 73 49-122 24-96 (114)
54 3ex7_B RNA-binding protein 8A; 99.8 4.2E-20 1.4E-24 116.2 9.6 77 46-122 18-94 (126)
55 2dng_A Eukaryotic translation 99.8 1.1E-19 3.7E-24 110.7 11.0 73 48-122 13-85 (103)
56 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-19 5E-24 107.8 11.3 74 48-123 6-79 (92)
57 2cqd_A RNA-binding region cont 99.8 6.9E-20 2.4E-24 113.8 10.1 75 47-122 14-88 (116)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.1E-20 7.2E-25 113.6 7.5 75 48-122 10-84 (102)
59 2dh8_A DAZ-associated protein 99.8 6.1E-20 2.1E-24 112.1 9.6 75 47-122 13-87 (105)
60 2ek1_A RNA-binding protein 12; 99.8 2.1E-20 7.1E-25 112.2 7.3 74 49-122 14-87 (95)
61 2mss_A Protein (musashi1); RNA 99.8 1.8E-20 6.2E-25 107.9 6.5 70 52-122 1-70 (75)
62 1wi8_A EIF-4B, eukaryotic tran 99.8 9.3E-20 3.2E-24 111.1 9.6 73 48-122 13-86 (104)
63 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9.1E-20 3.1E-24 116.3 10.0 76 47-122 60-135 (140)
64 2fy1_A RNA-binding motif prote 99.8 9.8E-20 3.4E-24 113.4 9.7 74 48-122 5-78 (116)
65 1wg5_A Heterogeneous nuclear r 99.8 1.1E-19 3.9E-24 111.0 9.7 73 48-122 13-86 (104)
66 2cq3_A RNA-binding protein 9; 99.8 3.7E-19 1.3E-23 108.3 11.8 74 47-122 12-85 (103)
67 2do0_A HnRNP M, heterogeneous 99.8 3.4E-19 1.2E-23 110.2 11.8 74 48-122 13-86 (114)
68 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.9E-19 6.6E-24 117.1 11.2 75 48-122 37-111 (156)
69 2kt5_A RNA and export factor-b 99.8 1.6E-19 5.6E-24 113.3 10.4 74 48-122 33-106 (124)
70 1p1t_A Cleavage stimulation fa 99.8 6.8E-20 2.3E-24 111.6 8.4 73 50-122 8-80 (104)
71 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.4E-20 8.1E-25 107.8 5.8 71 51-122 1-71 (77)
72 2rs2_A Musashi-1, RNA-binding 99.8 6.2E-20 2.1E-24 113.1 8.0 75 47-122 22-96 (109)
73 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.4E-19 8E-24 117.8 10.8 76 47-122 69-144 (165)
74 2kn4_A Immunoglobulin G-bindin 99.8 9.9E-20 3.4E-24 118.5 8.8 75 48-122 68-142 (158)
75 1x5o_A RNA binding motif, sing 99.8 8.4E-19 2.9E-23 108.5 12.5 74 47-121 22-95 (114)
76 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.5E-19 1.2E-23 108.3 10.5 74 47-122 12-85 (103)
77 2ki2_A SS-DNA binding protein 99.8 2.3E-20 8E-25 110.9 5.0 72 51-123 2-73 (90)
78 2cqg_A TDP-43, TAR DNA-binding 99.8 4.8E-19 1.7E-23 107.7 11.0 74 47-122 12-85 (103)
79 2err_A Ataxin-2-binding protei 99.8 1.1E-19 3.9E-24 111.9 8.2 74 47-122 26-99 (109)
80 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-19 4E-24 107.3 7.9 69 48-122 5-73 (89)
81 2db1_A Heterogeneous nuclear r 99.8 1.3E-19 4.6E-24 113.1 8.6 73 48-122 15-90 (118)
82 2cpi_A CCR4-NOT transcription 99.8 1.4E-19 4.6E-24 111.8 8.5 78 45-122 10-93 (111)
83 2jwn_A Embryonic polyadenylate 99.8 6.6E-20 2.2E-24 115.0 7.0 73 49-122 35-107 (124)
84 1x4a_A Splicing factor, argini 99.8 6.3E-19 2.2E-23 108.3 11.3 73 47-122 19-91 (109)
85 2dgw_A Probable RNA-binding pr 99.8 3.1E-19 1.1E-23 106.3 9.4 72 48-122 8-79 (91)
86 2cpx_A Hypothetical protein FL 99.8 5.1E-20 1.8E-24 114.1 6.0 79 44-122 19-97 (115)
87 1x4b_A Heterogeneous nuclear r 99.8 9.6E-20 3.3E-24 113.1 7.2 73 49-122 26-98 (116)
88 2nlw_A Eukaryotic translation 99.8 1.6E-19 5.4E-24 110.5 8.1 72 49-122 14-92 (105)
89 3q2s_C Cleavage and polyadenyl 99.8 1.7E-19 5.7E-24 124.4 8.9 75 49-123 67-143 (229)
90 1wez_A HnRNP H', FTP-3, hetero 99.8 3.5E-19 1.2E-23 108.6 9.3 72 48-122 13-84 (102)
91 1sjq_A Polypyrimidine tract-bi 99.8 3.3E-19 1.1E-23 109.2 9.2 70 48-123 14-85 (105)
92 4f02_A Polyadenylate-binding p 99.8 4.3E-19 1.5E-23 120.7 10.7 74 49-122 14-87 (213)
93 1wel_A RNA-binding protein 12; 99.8 1.5E-19 5.1E-24 113.6 7.4 74 48-122 23-96 (124)
94 2dgx_A KIAA0430 protein; RRM d 99.8 2.7E-19 9.2E-24 107.8 8.2 72 48-122 7-82 (96)
95 2hgl_A HNRPF protein, heteroge 99.8 1.5E-19 5E-24 115.6 7.3 73 48-122 42-117 (136)
96 2dis_A Unnamed protein product 99.8 2.6E-19 9E-24 109.9 8.1 75 48-122 6-84 (109)
97 2cpy_A RNA-binding protein 12; 99.8 2E-19 6.9E-24 111.5 7.2 73 48-122 13-86 (114)
98 1iqt_A AUF1, heterogeneous nuc 99.8 9.1E-20 3.1E-24 104.9 5.3 71 52-123 1-71 (75)
99 3md3_A Nuclear and cytoplasmic 99.8 8.7E-19 3E-23 113.7 10.4 76 47-122 84-159 (166)
100 2lmi_A GRSF-1, G-rich sequence 99.8 1.6E-19 5.4E-24 110.8 6.5 74 48-123 9-85 (107)
101 2a3j_A U1 small nuclear ribonu 99.8 5.5E-19 1.9E-23 111.8 9.0 73 48-123 27-103 (127)
102 2dnn_A RNA-binding protein 12; 99.8 2.5E-19 8.7E-24 110.5 7.3 70 50-122 16-85 (109)
103 1l3k_A Heterogeneous nuclear r 99.8 7.5E-19 2.6E-23 117.1 10.1 117 5-122 55-175 (196)
104 2lea_A Serine/arginine-rich sp 99.8 1.6E-19 5.4E-24 115.3 6.0 75 48-122 45-119 (135)
105 1why_A Hypothetical protein ri 99.8 1.9E-18 6.7E-23 104.0 10.5 70 47-122 14-85 (97)
106 1fxl_A Paraneoplastic encephal 99.8 1.8E-18 6.1E-23 112.3 10.9 74 49-122 1-74 (167)
107 2fc8_A NCL protein; structure 99.8 2.1E-18 7.2E-23 104.6 10.3 73 47-122 12-84 (102)
108 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-18 6E-23 107.2 10.0 72 48-122 6-77 (115)
109 1x4d_A Matrin 3; structural ge 99.8 5.2E-19 1.8E-23 107.9 7.3 69 48-122 13-84 (102)
110 1fj7_A Nucleolin RBD1, protein 99.8 4.9E-20 1.7E-24 111.8 2.7 73 48-122 15-87 (101)
111 2xnq_A Nuclear polyadenylated 99.8 2.6E-18 9E-23 103.7 9.7 71 44-122 16-87 (97)
112 3r27_A HnRNP L, heterogeneous 99.8 1.1E-18 3.9E-23 105.8 7.9 69 48-122 19-89 (100)
113 2fc9_A NCL protein; structure 99.8 1.8E-18 6.1E-23 104.8 8.8 72 47-122 12-83 (101)
114 2cq1_A PTB-like protein L; RRM 99.8 4.1E-18 1.4E-22 103.8 10.4 69 48-122 13-83 (101)
115 2jvr_A Nucleolar protein 3; RN 99.8 6E-19 2.1E-23 109.2 6.8 70 49-122 27-97 (111)
116 2jvo_A Nucleolar protein 3; nu 99.8 2.1E-18 7.3E-23 106.1 9.0 71 44-122 25-95 (108)
117 2e5j_A Methenyltetrahydrofolat 99.8 2.9E-18 9.8E-23 103.3 9.2 71 47-122 16-86 (97)
118 2dha_A FLJ20171 protein; RRM d 99.8 9.7E-19 3.3E-23 110.0 7.3 74 47-122 20-97 (123)
119 2hgm_A HNRPF protein, heteroge 99.8 1.6E-18 5.3E-23 109.5 8.2 73 48-123 40-114 (126)
120 2xs2_A Deleted in azoospermia- 99.8 4.8E-19 1.7E-23 107.5 5.7 71 49-122 8-78 (102)
121 2cpj_A Non-POU domain-containi 99.8 3.3E-18 1.1E-22 103.4 9.3 69 48-122 13-81 (99)
122 1x4c_A Splicing factor, argini 99.8 3.6E-18 1.2E-22 104.9 9.6 65 48-119 13-77 (108)
123 1b7f_A Protein (SXL-lethal pro 99.8 2.3E-18 7.8E-23 112.1 9.2 74 49-122 2-75 (168)
124 3nmr_A Cugbp ELAV-like family 99.8 3.7E-18 1.3E-22 111.7 10.2 74 48-122 93-169 (175)
125 1wex_A Hypothetical protein (r 99.8 3.2E-18 1.1E-22 104.8 9.2 69 48-122 13-83 (104)
126 2ytc_A PRE-mRNA-splicing facto 99.8 5.2E-18 1.8E-22 99.6 9.7 70 48-123 10-80 (85)
127 2g4b_A Splicing factor U2AF 65 99.8 3.3E-18 1.1E-22 111.9 9.6 74 49-122 93-166 (172)
128 2dnq_A RNA-binding protein 4B; 99.8 6.5E-18 2.2E-22 100.4 9.7 67 48-122 6-72 (90)
129 2j8a_A Histone-lysine N-methyl 99.8 1.1E-18 3.8E-23 109.7 6.5 72 51-122 3-88 (136)
130 2la4_A Nuclear and cytoplasmic 99.8 4.5E-18 1.5E-22 103.0 9.1 70 48-123 25-94 (101)
131 2ad9_A Polypyrimidine tract-bi 99.8 3.7E-18 1.3E-22 106.7 8.8 69 48-122 29-99 (119)
132 1fxl_A Paraneoplastic encephal 99.8 6.6E-18 2.3E-22 109.6 10.2 74 48-121 86-159 (167)
133 2hgn_A Heterogeneous nuclear r 99.8 6.2E-19 2.1E-23 113.1 5.0 73 48-123 44-116 (139)
134 2f3j_A RNA and export factor b 99.8 3.9E-18 1.3E-22 113.3 8.9 73 49-122 87-159 (177)
135 3pgw_S U1-70K; protein-RNA com 99.8 4E-18 1.4E-22 127.0 10.0 76 48-123 100-175 (437)
136 1b7f_A Protein (SXL-lethal pro 99.8 8.1E-18 2.8E-22 109.5 10.3 75 48-122 87-163 (168)
137 2lcw_A RNA-binding protein FUS 99.6 6.7E-20 2.3E-24 113.9 0.0 76 48-123 5-88 (116)
138 1nu4_A U1A RNA binding domain; 99.8 2.1E-18 7.2E-23 103.7 6.6 72 48-122 6-81 (97)
139 3beg_B Splicing factor, argini 99.7 3.2E-18 1.1E-22 106.3 7.4 68 48-122 14-81 (115)
140 1x4g_A Nucleolysin TIAR; struc 99.7 7E-18 2.4E-22 103.6 8.9 71 46-122 21-91 (109)
141 1l3k_A Heterogeneous nuclear r 99.7 7.8E-18 2.7E-22 112.2 9.7 74 48-122 11-84 (196)
142 1whx_A Hypothetical protein ri 99.7 4E-18 1.4E-22 105.3 7.6 68 49-122 9-76 (111)
143 2hvz_A Splicing factor, argini 99.7 2.4E-18 8.1E-23 104.3 6.4 67 51-122 1-67 (101)
144 2i2y_A Fusion protein consists 99.7 7.8E-18 2.7E-22 108.8 9.2 71 47-122 70-140 (150)
145 4f02_A Polyadenylate-binding p 99.7 3.4E-18 1.2E-22 116.2 7.7 72 49-122 102-173 (213)
146 2qfj_A FBP-interacting repress 99.7 1.7E-17 5.9E-22 112.0 11.1 75 48-122 123-197 (216)
147 2kvi_A Nuclear polyadenylated 99.7 1.1E-17 3.7E-22 100.6 8.7 68 48-123 8-76 (96)
148 2yh0_A Splicing factor U2AF 65 99.7 3.1E-17 1.1E-21 109.4 11.5 75 48-122 112-186 (198)
149 2e5g_A U6 snRNA-specific termi 99.7 2.5E-17 8.5E-22 98.6 10.0 69 49-123 7-75 (94)
150 2cpd_A Apobec-1 stimulating pr 99.7 2.9E-17 9.8E-22 99.2 10.2 68 47-122 12-81 (99)
151 1wf1_A RNA-binding protein RAL 99.7 1.7E-17 5.8E-22 102.0 9.3 68 48-123 25-93 (110)
152 1x4f_A Matrin 3; structural ge 99.7 5.1E-18 1.7E-22 105.0 7.0 70 47-122 22-94 (112)
153 2qfj_A FBP-interacting repress 99.7 1.4E-17 4.7E-22 112.5 9.6 74 49-122 27-100 (216)
154 1fjc_A Nucleolin RBD2, protein 99.7 2.3E-18 8E-23 103.3 5.1 70 48-122 14-83 (96)
155 2e44_A Insulin-like growth fac 99.7 1.2E-17 4E-22 100.3 8.2 71 48-122 13-84 (96)
156 2dgt_A RNA-binding protein 30; 99.7 1.7E-17 5.7E-22 99.0 8.6 68 47-122 7-74 (92)
157 2dnl_A Cytoplasmic polyadenyla 99.7 4.2E-18 1.4E-22 105.5 6.1 67 48-115 6-78 (114)
158 2cjk_A Nuclear polyadenylated 99.7 1.4E-18 4.7E-23 113.2 4.0 73 49-122 86-158 (167)
159 2dnp_A RNA-binding protein 14; 99.7 2.1E-17 7E-22 98.2 8.6 67 48-122 7-73 (90)
160 3nmr_A Cugbp ELAV-like family 99.7 2.9E-17 1E-21 107.4 10.0 71 49-119 2-74 (175)
161 3md3_A Nuclear and cytoplasmic 99.7 1.7E-17 5.8E-22 107.6 8.7 71 51-122 1-71 (166)
162 3egn_A RNA-binding protein 40; 99.7 1.8E-17 6E-22 106.3 7.8 72 48-122 43-122 (143)
163 1wg1_A KIAA1579 protein, homol 99.7 1.8E-17 6.3E-22 98.1 6.9 67 49-122 4-70 (88)
164 1x5p_A Negative elongation fac 99.7 8.6E-17 3E-21 96.8 9.5 68 47-122 12-79 (97)
165 2hzc_A Splicing factor U2AF 65 99.7 3E-17 1E-21 96.7 7.3 67 49-122 5-82 (87)
166 2cjk_A Nuclear polyadenylated 99.7 3.4E-17 1.2E-21 106.6 8.2 72 49-122 2-73 (167)
167 3tyt_A Heterogeneous nuclear r 99.7 4.8E-17 1.6E-21 110.3 9.1 70 48-122 2-72 (205)
168 2cq2_A Hypothetical protein LO 99.7 1.9E-17 6.6E-22 102.6 6.5 63 49-117 24-88 (114)
169 2cqh_A IGF-II mRNA-binding pro 99.7 2.1E-17 7.3E-22 98.6 6.1 68 48-122 6-75 (93)
170 2dgu_A Heterogeneous nuclear r 99.7 6.4E-17 2.2E-21 98.3 8.1 66 49-122 10-75 (103)
171 2voo_A Lupus LA protein; RNA-b 99.7 1.6E-16 5.4E-21 106.9 9.9 72 49-122 108-179 (193)
172 3smz_A Protein raver-1, ribonu 99.7 3E-16 1E-20 110.3 11.5 75 48-122 93-167 (284)
173 2diu_A KIAA0430 protein; struc 99.7 1.5E-16 5.1E-21 95.0 8.2 65 49-123 8-77 (96)
174 1sjr_A Polypyrimidine tract-bi 99.7 1.6E-16 5.5E-21 104.1 8.8 69 50-122 46-116 (164)
175 3d2w_A TAR DNA-binding protein 99.7 1.2E-16 4.3E-21 94.9 7.6 67 47-122 8-76 (89)
176 2ghp_A U4/U6 snRNA-associated 99.7 9.3E-17 3.2E-21 113.3 8.0 96 26-122 185-283 (292)
177 3zzy_A Polypyrimidine tract-bi 99.7 2.7E-16 9.1E-21 99.6 9.0 65 50-119 28-93 (130)
178 1fje_B Nucleolin RBD12, protei 99.7 7.9E-17 2.7E-21 105.7 6.4 88 26-122 79-166 (175)
179 2pe8_A Splicing factor 45; RRM 99.7 8.4E-16 2.9E-20 94.1 10.3 75 48-122 6-86 (105)
180 3smz_A Protein raver-1, ribonu 99.7 3.4E-16 1.2E-20 110.0 9.4 74 48-122 182-256 (284)
181 3pgw_A U1-A; protein-RNA compl 99.7 4.1E-16 1.4E-20 109.5 9.5 72 48-122 7-82 (282)
182 2adc_A Polypyrimidine tract-bi 99.7 6E-16 2E-20 106.1 9.9 71 47-122 31-102 (229)
183 2bz2_A Negative elongation fac 99.7 4.3E-16 1.5E-20 97.6 8.3 67 48-122 37-103 (121)
184 2e5i_A Heterogeneous nuclear r 99.7 7.8E-16 2.7E-20 96.8 9.3 64 51-120 26-90 (124)
185 3tyt_A Heterogeneous nuclear r 99.6 6.9E-16 2.4E-20 104.6 7.6 71 49-121 122-194 (205)
186 1qm9_A Polypyrimidine tract-bi 99.6 5.6E-16 1.9E-20 103.6 6.8 69 49-122 2-71 (198)
187 3sde_A Paraspeckle component 1 99.6 2.3E-15 7.9E-20 105.0 9.7 73 49-122 95-171 (261)
188 1wf0_A TDP-43, TAR DNA-binding 99.6 3.3E-16 1.1E-20 92.6 4.0 68 48-122 3-70 (88)
189 3u1l_A PRE-mRNA-splicing facto 99.6 2.2E-15 7.5E-20 104.3 8.1 65 47-117 131-204 (240)
190 3sde_A Paraspeckle component 1 99.6 3.2E-15 1.1E-19 104.3 9.1 69 48-122 20-88 (261)
191 3pgw_A U1-A; protein-RNA compl 99.6 5.2E-15 1.8E-19 103.8 9.6 70 48-122 205-275 (282)
192 1fje_B Nucleolin RBD12, protei 99.6 2.3E-16 7.9E-21 103.5 1.1 73 48-122 11-83 (175)
193 2ghp_A U4/U6 snRNA-associated 99.6 6.8E-15 2.3E-19 103.7 7.9 73 49-122 116-189 (292)
194 1jmt_A Splicing factor U2AF 35 99.6 1.7E-15 5.9E-20 92.5 4.2 68 55-123 20-99 (104)
195 1qm9_A Polypyrimidine tract-bi 99.6 1.4E-14 4.9E-19 96.7 8.6 70 49-123 119-190 (198)
196 2g4b_A Splicing factor U2AF 65 99.6 7.9E-15 2.7E-19 95.7 7.1 67 49-122 3-80 (172)
197 3v4m_A Splicing factor U2AF 65 99.5 2.1E-14 7.1E-19 87.8 7.7 75 49-123 4-90 (105)
198 2dit_A HIV TAT specific factor 99.5 6E-14 2.1E-18 86.4 9.6 71 48-122 13-94 (112)
199 2yh0_A Splicing factor U2AF 65 99.5 1.1E-14 3.8E-19 96.9 6.7 67 49-122 3-80 (198)
200 2adc_A Polypyrimidine tract-bi 99.5 3.8E-14 1.3E-18 97.1 9.3 69 49-122 150-220 (229)
201 3ue2_A Poly(U)-binding-splicin 99.5 7.3E-14 2.5E-18 87.1 8.6 74 49-122 19-101 (118)
202 3tht_A Alkylated DNA repair pr 99.5 2.9E-14 1E-18 103.2 7.7 65 48-118 16-82 (345)
203 1owx_A Lupus LA protein, SS-B, 99.3 5.9E-12 2E-16 78.5 8.2 68 48-121 16-87 (121)
204 2d9o_A DNAJ (HSP40) homolog, s 99.3 6.5E-12 2.2E-16 76.0 8.1 56 60-122 27-82 (100)
205 3s6e_A RNA-binding protein 39; 99.3 7.8E-12 2.7E-16 77.4 8.5 70 49-122 6-85 (114)
206 3dxb_A Thioredoxin N-terminall 99.1 5.2E-10 1.8E-14 76.1 8.6 61 62-122 141-205 (222)
207 2dnr_A Synaptojanin-1; RRM dom 99.1 2.9E-10 9.8E-15 67.2 5.5 67 48-123 5-79 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 1.6E-09 5.3E-14 64.4 4.4 67 47-122 12-87 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.7 7.4E-08 2.5E-12 58.5 7.5 68 49-122 20-92 (117)
210 1uw4_A UPF3X; nonsense mediate 98.2 1.9E-05 6.5E-10 46.6 8.9 71 51-121 2-74 (91)
211 1wey_A Calcipressin 1; structu 97.8 4.8E-05 1.7E-09 45.7 5.6 66 51-122 6-76 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.8 7.4E-05 2.5E-09 46.1 6.5 66 48-121 22-87 (119)
213 2dhx_A Poly (ADP-ribose) polym 97.8 0.00036 1.2E-08 41.9 8.9 64 50-122 8-76 (104)
214 2l08_A Regulator of nonsense t 97.6 0.00016 5.6E-09 42.9 5.2 72 50-121 9-82 (97)
215 1whv_A Poly(A)-specific ribonu 97.5 0.00083 2.8E-08 39.9 7.5 53 51-112 17-69 (100)
216 3ctr_A Poly(A)-specific ribonu 97.1 0.0016 5.6E-08 38.7 5.6 53 52-113 8-60 (101)
217 3pq1_A Poly(A) RNA polymerase; 96.7 0.001 3.5E-08 49.9 3.2 57 48-110 51-107 (464)
218 2kn4_A Immunoglobulin G-bindin 96.7 0.0015 5E-08 41.5 3.4 34 79-114 2-35 (158)
219 3p3d_A Nucleoporin 53; structu 96.3 0.0031 1.1E-07 39.4 3.0 68 51-120 8-89 (132)
220 2i2y_A Fusion protein consists 94.9 0.013 4.3E-07 36.8 2.0 33 89-122 10-43 (150)
221 4f25_A Polyadenylate-binding p 92.1 0.039 1.3E-06 33.1 0.7 62 5-66 45-113 (115)
222 3d45_A Poly(A)-specific ribonu 91.3 0.91 3.1E-05 34.4 7.5 55 51-114 441-495 (507)
223 4e8u_A Putative uncharacterize 54.4 41 0.0014 21.7 5.9 45 63-110 34-81 (172)
224 3fut_A Dimethyladenosine trans 30.2 58 0.002 22.2 3.7 31 51-82 111-141 (271)
225 2g0c_A ATP-dependent RNA helic 29.6 67 0.0023 17.0 6.2 53 61-122 12-69 (76)
226 3lpe_A Putative transcription 26.6 48 0.0016 18.7 2.4 34 76-114 39-72 (92)
227 3ts2_A Protein LIN-28 homolog 26.0 11 0.00036 23.7 -0.6 27 66-100 3-29 (148)
228 3uzu_A Ribosomal RNA small sub 24.8 38 0.0013 23.2 2.0 32 51-82 115-146 (279)
229 1qyr_A KSGA, high level kasuga 23.0 76 0.0026 21.3 3.2 22 52-73 92-113 (252)
230 3h7h_B Transcription elongatio 22.5 51 0.0017 19.3 2.0 34 76-114 40-73 (106)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.90 E-value=3.3e-23 Score=125.98 Aligned_cols=75 Identities=32% Similarity=0.556 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+++|||+|||+++++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|..|++.|||..+.|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 356889999999999999999999999999999999999899999999999999999999999999999999987
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.88 E-value=4.9e-22 Score=122.92 Aligned_cols=75 Identities=20% Similarity=0.329 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
++.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 346789999999999999999999999999999999999899999999999999999999999999999999987
No 3
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.86 E-value=4.8e-21 Score=115.95 Aligned_cols=75 Identities=27% Similarity=0.425 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNE--------ARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
...++|||+|||+++++++|+++|++||.|.. +.+..++.+|.++|||||+|.+.++|..|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45688999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred ccc
Q 043937 120 ASC 122 (123)
Q Consensus 120 ~~~ 122 (123)
++|
T Consensus 91 ~~l 93 (99)
T 2la6_A 91 NPI 93 (99)
T ss_dssp SBC
T ss_pred cEE
Confidence 987
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.86 E-value=5.8e-21 Score=111.87 Aligned_cols=73 Identities=34% Similarity=0.651 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3579999999999999999999999999999999998899999999999999999999999999999999987
No 5
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.3e-21 Score=114.81 Aligned_cols=77 Identities=23% Similarity=0.509 Sum_probs=72.1
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 45 IRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 45 ~~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....+.++|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 88 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENII 88 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344567889999999999999999999999999999999998 89999999999999999999999999999999886
No 6
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.86 E-value=1.1e-21 Score=117.01 Aligned_cols=72 Identities=21% Similarity=0.394 Sum_probs=67.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYG--YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+|||+|||+++++++|+++|+.|| .|.++.++.++.+|.++|||||+|.+.++|..|++.|||..+.|++|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4699999999999999999999999 99999999999899999999999999999999999999999999987
No 7
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.8e-21 Score=116.30 Aligned_cols=76 Identities=29% Similarity=0.479 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3466889999999999999999999999999999999998889999999999999999999999999999999987
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=112.15 Aligned_cols=75 Identities=35% Similarity=0.570 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 346789999999999999999999999999999999998889999999999999999999999999999999987
No 9
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.2e-21 Score=113.84 Aligned_cols=75 Identities=33% Similarity=0.507 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 446789999999999999999999999999999999998889999999999999999999999999999999986
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=4.9e-21 Score=119.07 Aligned_cols=72 Identities=26% Similarity=0.605 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.||.|..++++++. +.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i 75 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 75 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 45789999999999999999999999999999999885 5589999999999999999999999999999987
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=5.5e-21 Score=112.45 Aligned_cols=75 Identities=35% Similarity=0.639 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 79 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 456889999999999999999999999999999999998889999999999999999999999999999999987
No 12
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.8e-21 Score=115.76 Aligned_cols=76 Identities=29% Similarity=0.554 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3456889999999999999999999999999999999998899999999999999999999999999999999987
No 13
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=9.8e-21 Score=113.37 Aligned_cols=76 Identities=26% Similarity=0.535 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3456889999999999999999999999999999999998889999999999999999999999999999999986
No 14
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2e-20 Score=116.03 Aligned_cols=76 Identities=33% Similarity=0.581 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3467889999999999999999999999999999999998889999999999999999999999999999999886
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=114.71 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3456889999999999999999999999999999999998889999999999999999999999999999999987
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=112.60 Aligned_cols=75 Identities=35% Similarity=0.655 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 356789999999999999999999999999999999998889999999999999999999999999999999987
No 17
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.7e-20 Score=116.32 Aligned_cols=76 Identities=26% Similarity=0.444 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3456889999999999999999999999999999999998889999999999999999999999999999999987
No 18
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.3e-20 Score=117.29 Aligned_cols=77 Identities=27% Similarity=0.461 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
..+.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|++.||+..+.|++|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999874
No 19
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4e-21 Score=113.15 Aligned_cols=76 Identities=28% Similarity=0.477 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
.+.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|++.||+..+.|+.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 3567899999999999999999999999999999999988899999999999999999999999999999998764
No 20
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.5e-21 Score=116.05 Aligned_cols=74 Identities=16% Similarity=0.241 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.|..+.+++++. |.++|||||+|.+.++|..|+. +++..+.|++|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 34567899999999999999999999999999999999986 9999999999999999999998 99999999987
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=1.4e-20 Score=113.32 Aligned_cols=73 Identities=26% Similarity=0.539 Sum_probs=70.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 5789999999999999999999999999999999998889999999999999999999999999999999886
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=114.40 Aligned_cols=76 Identities=30% Similarity=0.549 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeec-CCCCCceeEEEEEeCCHHHHHHHHHHh-CCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILD-RETGRSRGFGFVTFSTVEEASSAIQAL-DGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~g~~kg~afv~f~~~~~a~~a~~~l-~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|+.||.|..+.+..+ +.+|.++|||||+|.+.++|..|+..| |+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 456788999999999999999999999999999999988 678999999999999999999999999 9999999987
No 23
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=114.69 Aligned_cols=75 Identities=33% Similarity=0.687 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 456889999999999999999999999999999999998889999999999999999999999999999999987
No 24
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=122.88 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYG--YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.|| .|..+.++.++.+|.++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 458999999999999999999999999 99999999999899999999999999999999999999999999987
No 25
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=3e-21 Score=117.32 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=70.1
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC-ccc
Q 043937 50 SSKLFVGGISY------NMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN-ASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g-~~~ 122 (123)
+++|||+|||+ ++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|..|+..|||..+.| ++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57899999999 99999999999999999999999999889999999999999999999999999999999 876
No 26
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=2.4e-21 Score=116.93 Aligned_cols=75 Identities=27% Similarity=0.389 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC--eEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc----eeCCcc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGY--VNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ----VTFNAS 121 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~----~~~g~~ 121 (123)
....+|||+|||+++++++|+++|++||. +..+++++++.+|.++|||||+|.+.++|..|++.||+. .+.|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34567999999999999999999999995 678999999999999999999999999999999999997 488987
Q ss_pred c
Q 043937 122 C 122 (123)
Q Consensus 122 ~ 122 (123)
|
T Consensus 87 i 87 (95)
T 2lkz_A 87 I 87 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=117.59 Aligned_cols=73 Identities=22% Similarity=0.433 Sum_probs=67.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC-CceeCCccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYG-YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALD-GQVTFNASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~-~~~~~g~~~ 122 (123)
+.+|||+|||+++++++|+++|++|| .|.++++++++.+|.++|||||+|.+.++|..|++.++ +..+.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i 75 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKV 75 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEE
Confidence 35799999999999999999999999 89999999999899999999999999999999998774 567899876
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=112.54 Aligned_cols=74 Identities=38% Similarity=0.647 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. ||+..+.|++|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEE
Confidence 456889999999999999999999999999999999998889999999999999999999998 99999999987
No 29
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=112.67 Aligned_cols=74 Identities=28% Similarity=0.485 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeE-EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVN-EARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
...++|||+|||+++++++|+++|++||.|. .+.+..++.+|.++|||||+|.+.++|+.|+..||+..+.|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 4568899999999999999999999999999 9999999889999999999999999999999999999999998
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=113.68 Aligned_cols=75 Identities=35% Similarity=0.530 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 456889999999999999999999999999999999998889999999999999999999999999999999886
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=112.62 Aligned_cols=74 Identities=34% Similarity=0.699 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..+ +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 346788999999999999999999999999999999988 79999999999999999999999999999999987
No 32
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.7e-20 Score=115.47 Aligned_cols=76 Identities=29% Similarity=0.521 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3566889999999999999999999999999999999998889999999999999999999999999999999987
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=6e-20 Score=112.06 Aligned_cols=74 Identities=32% Similarity=0.539 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC---ccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN---ASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g---~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|..|+..||+..+.| ++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 457899999999999999999999999999999999998 79999999999999999999999999999988 765
No 34
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=114.47 Aligned_cols=75 Identities=32% Similarity=0.449 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 456889999999999999999999999999999999998889999999999999999999999999999999987
No 35
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.84 E-value=2e-20 Score=118.63 Aligned_cols=77 Identities=32% Similarity=0.471 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34568899999999999999999999999999999999988899999999999999999999999999999999873
No 36
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=3.3e-20 Score=109.65 Aligned_cols=75 Identities=31% Similarity=0.581 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|+. +++..+.|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 3466889999999999999999999999999999999998899999999999999999999996 58888999876
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=117.95 Aligned_cols=77 Identities=35% Similarity=0.555 Sum_probs=72.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 46 RCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 46 ~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.....++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999886
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=111.17 Aligned_cols=74 Identities=31% Similarity=0.521 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.+..++. |.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 4557899999999999999999999999999999999885 9999999999999999999999999999999987
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4e-20 Score=113.84 Aligned_cols=75 Identities=23% Similarity=0.446 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC------CceeCCcc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALD------GQVTFNAS 121 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~------~~~~~g~~ 121 (123)
...++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..|| +..+.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456789999999999999999999999999999999998889999999999999999999999999 99999987
Q ss_pred c
Q 043937 122 C 122 (123)
Q Consensus 122 ~ 122 (123)
|
T Consensus 93 l 93 (111)
T 1x4h_A 93 L 93 (111)
T ss_dssp E
T ss_pred E
Confidence 6
No 40
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.5e-20 Score=112.04 Aligned_cols=75 Identities=33% Similarity=0.542 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-CCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce-eCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAK-YGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQV-TFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~-~~g~~~~ 123 (123)
...++|||+|||+++++++|+++|+. ||.|..+.++.++ +|.++|||||+|.+.++|..|+..||+.. +.|++|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 45678999999999999999999999 9999999999998 89999999999999999999999999999 9999874
No 41
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=110.17 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=66.2
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCc-cc
Q 043937 50 SSKLFVGGISYNM------DDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNA-SC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~-~~ 122 (123)
+++|||+|||+.+ ++++|+++|++||.|..+.+. +.+|.++|||||+|.+.++|..|+..|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3679999999999 779999999999999999887 34799999999999999999999999999999999 76
Q ss_pred C
Q 043937 123 V 123 (123)
Q Consensus 123 ~ 123 (123)
.
T Consensus 79 ~ 79 (81)
T 2krb_A 79 R 79 (81)
T ss_dssp C
T ss_pred E
Confidence 3
No 42
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=113.20 Aligned_cols=75 Identities=16% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 445789999999999999999999999999888888888889999999999999999999999999999999987
No 43
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=6.4e-20 Score=112.27 Aligned_cols=74 Identities=27% Similarity=0.462 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+.+++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 456889999999999999999999999999999999998 89999999999999999999999999999999987
No 44
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=112.13 Aligned_cols=75 Identities=27% Similarity=0.480 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCC---CCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRE---TGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||.|..+.+..++. ++.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 3467899999999999999999999999999999998865 55899999999999999999999999999999886
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=113.36 Aligned_cols=75 Identities=43% Similarity=0.805 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 456889999999999999999999999999999999998889999999999999999999999999999999987
No 46
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=119.49 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc----eeCCc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNE--ARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ----VTFNA 120 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~----~~~g~ 120 (123)
....++|||+|||+++++++|+++|++||.|.. +++++++.+|.++|||||+|.+. +|..|+..||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 355688999999999999999999999999977 99999998999999999999999 999999999999 99999
Q ss_pred ccC
Q 043937 121 SCV 123 (123)
Q Consensus 121 ~~~ 123 (123)
+|.
T Consensus 99 ~l~ 101 (131)
T 2m2b_A 99 TIN 101 (131)
T ss_dssp CCC
T ss_pred EEE
Confidence 874
No 47
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=114.36 Aligned_cols=75 Identities=21% Similarity=0.439 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecC-CCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDR-ETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
....++|||+|||+++++++|+++|+.|| |..+.+..++ .+|.++|||||+|.+.++|..|+ .||+..+.|++|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 45678999999999999999999999999 9999999887 58999999999999999999999 8999999999874
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=112.63 Aligned_cols=74 Identities=30% Similarity=0.673 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEA-RIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.++|||+|||+++++++|+++|+.||.|..+ .+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPI 78 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 56889999999999999999999999999999 999998889999999999999999999999999999999887
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.5e-20 Score=113.91 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee---CCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVT---FNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~---~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+ .|++|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 34568899999999999999999999999999999999988899999999999999999999999999987 77776
No 50
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=114.21 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeE--------EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVN--------EARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF 118 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~ 118 (123)
....++|||+|||+++++++|+++|+.||.|. .+.+..++.+|.++|||||+|.+.++|..|+..||+..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35678999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred Cccc
Q 043937 119 NASC 122 (123)
Q Consensus 119 g~~~ 122 (123)
|++|
T Consensus 92 g~~l 95 (113)
T 2cpe_A 92 GSKL 95 (113)
T ss_dssp TEEC
T ss_pred CCEE
Confidence 9887
No 51
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=4.9e-20 Score=109.20 Aligned_cols=72 Identities=26% Similarity=0.541 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+ .||+..+.|++|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l 77 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQI 77 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEE
Confidence 478999999999999999999999999999999999888999999999999999999999 899999999987
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.83 E-value=3e-20 Score=109.85 Aligned_cols=75 Identities=24% Similarity=0.505 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC-ceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGR-SRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~-~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+..++|||+|||+++++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 3567899999999999999999999999999999998876655 89999999999999999999999999999987
No 53
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=116.10 Aligned_cols=73 Identities=27% Similarity=0.499 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+ .||+..+.|++|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 96 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPI 96 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEE
Confidence 4578999999999999999999999999999999999888999999999999999999999 899999999886
No 54
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=4.2e-20 Score=116.19 Aligned_cols=77 Identities=30% Similarity=0.567 Sum_probs=72.5
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 46 RCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 46 ~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34567889999999999999999999999999999999998889999999999999999999999999999999987
No 55
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=1.1e-19 Score=110.68 Aligned_cols=73 Identities=22% Similarity=0.483 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.|| |..+.++.++.+|.++|||||+|.+.++|..|+ .||+..+.|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 3568899999999999999999999996 999999999988999999999999999999999 899999999987
No 56
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=1.4e-19 Score=107.83 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
...++|||+|||+++++++|+++|++||.|..+.+..+ +|.++|||||+|.+.++|..|+..||+..+.|++|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 45688999999999999999999999999999999875 789999999999999999999999999999999874
No 57
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=6.9e-20 Score=113.75 Aligned_cols=75 Identities=37% Similarity=0.639 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|..|+..+++ .+.|++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999998 8999876
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-20 Score=113.55 Aligned_cols=75 Identities=35% Similarity=0.639 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 456889999999999999999999999999999999998889999999999999999999999999999999886
No 59
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=112.08 Aligned_cols=75 Identities=31% Similarity=0.553 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+.. |+..+.|++|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 45668899999999999999999999999999999999988999999999999999999999998 9999999886
No 60
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=2.1e-20 Score=112.15 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 45789999999999999999999999999988888888889999999999999999999999999999999987
No 61
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.82 E-value=1.8e-20 Score=107.90 Aligned_cols=70 Identities=33% Similarity=0.611 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 52 ~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|+.|+. +|+..+.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 48999999999999999999999999999999998889999999999999999999997 99999999987
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=111.14 Aligned_cols=73 Identities=22% Similarity=0.472 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC-CCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRET-GRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.|| |..+.++.++.+ |.++|||||+|.+.++|..|+ .||+..+.|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 3458899999999999999999999999 999999999877 899999999999999999999 899999999887
No 63
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=116.28 Aligned_cols=76 Identities=34% Similarity=0.633 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 135 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 135 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567899999999999999999999999999999999998889999999999999999999999999999999986
No 64
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=113.39 Aligned_cols=74 Identities=32% Similarity=0.621 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 346789999999999999999999999999999999988 89999999999999999999999999999999987
No 65
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=110.96 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEE-EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNE-ARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|.. +.++.+ .+|+++|||||+|.+.++|..|+.. |+..+.|++|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 45688999999999999999999999999987 888888 5899999999999999999999986 9999999876
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-19 Score=108.26 Aligned_cols=74 Identities=31% Similarity=0.579 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..+.. .++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35668899999999999999999999999999999998853 489999999999999999999999999999987
No 67
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-19 Score=110.18 Aligned_cols=74 Identities=36% Similarity=0.575 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|..||.|..+.+..++ +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 456889999999999999999999999999999999987 59999999999999999999999999999999887
No 68
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=1.9e-19 Score=117.07 Aligned_cols=75 Identities=24% Similarity=0.417 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRII 111 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 467899999999999999999999999999999999999889999999999999999999999999999999887
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.82 E-value=1.6e-19 Score=113.32 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+++|||+|||+++++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 456889999999999999999999999999999999998 89999999999999999999999999999999886
No 70
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=111.57 Aligned_cols=73 Identities=33% Similarity=0.635 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4679999999999999999999999999999999998889999999999999999999999999999999987
No 71
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-20 Score=107.80 Aligned_cols=71 Identities=34% Similarity=0.583 Sum_probs=67.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..++ ..+.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 469999999999999999999999999999999998889999999999999999999999998 99999886
No 72
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=6.2e-20 Score=113.12 Aligned_cols=75 Identities=33% Similarity=0.545 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..+ +..+.|++|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 346788999999999999999999999999999999999888999999999999999999999865 588998876
No 73
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=2.4e-19 Score=117.80 Aligned_cols=76 Identities=29% Similarity=0.521 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+.+++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4567889999999999999999999999999999999998899999999999999999999999999999999887
No 74
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=9.9e-20 Score=118.48 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 456899999999999999999999999999999999998889999999999999999999999999999999886
No 75
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.4e-19 Score=108.46 Aligned_cols=74 Identities=24% Similarity=0.526 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|..|+..||+..+.+++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 3466899999999999999999999999999999999998 8999999999999999999999999999996544
No 76
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=108.33 Aligned_cols=74 Identities=19% Similarity=0.393 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|+.||.|..+.+..+. +.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3456889999999999999999999999999999999885 3468999999999999999999999999999886
No 77
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.81 E-value=2.3e-20 Score=110.95 Aligned_cols=72 Identities=31% Similarity=0.602 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.+ |..|+..||+..+.|++|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEE
Confidence 57999999999999999999999999999999999888999999999999999 9999999999999999874
No 78
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-19 Score=107.72 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+. ++..+.|++|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 3456889999999999999999999999999999999998889999999999999999999998 5678888775
No 79
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=111.86 Aligned_cols=74 Identities=31% Similarity=0.566 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4567899999999999999999999999999999998885 4589999999999999999999999999999987
No 80
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.2e-19 Score=107.33 Aligned_cols=69 Identities=26% Similarity=0.323 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+..|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.++++|..|++.||+.++.|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3467799999999999999999999999999999865 47899999999999999999999999999987
No 81
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=113.10 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGY---VNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|..|+. +|+..+.|++|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 45688999999999999999999999999 89999999986 9999999999999999999998 99999999876
No 82
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=111.83 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=70.0
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHH---HHhhcCCCeEEEEEeecCCCC---CceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043937 45 IRCMSSSKLFVGGISYNMDDNSLR---EAFAKYGYVNEARIILDRETG---RSRGFGFVTFSTVEEASSAIQALDGQVTF 118 (123)
Q Consensus 45 ~~~~~~~~l~v~~L~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~g---~~kg~afv~f~~~~~a~~a~~~l~~~~~~ 118 (123)
.+....++|||+|||+++++++|+ ++|++||.|..+.+..+..++ .++|||||+|.+.++|..|+..||+..+.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 334567889999999999999999 999999999999998887543 56799999999999999999999999999
Q ss_pred Cccc
Q 043937 119 NASC 122 (123)
Q Consensus 119 g~~~ 122 (123)
|++|
T Consensus 90 gr~l 93 (111)
T 2cpi_A 90 GRTL 93 (111)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 9986
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.81 E-value=6.6e-20 Score=115.02 Aligned_cols=73 Identities=22% Similarity=0.521 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+ .||+..+.|++|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 107 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTI 107 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 4688999999999999999999999999999999999888999999999999999999999 799999999987
No 84
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.3e-19 Score=108.27 Aligned_cols=73 Identities=19% Similarity=0.352 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 456789999999999999999999999999999998544 5589999999999999999999999999999887
No 85
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=106.31 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.| .|..+.++.+ .+|.++|||||+|.+.++|..|+. ||+..+.|++|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 456889999999999999999999999 9999999999 589999999999999999999999 99999999986
No 86
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-20 Score=114.05 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=65.9
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 44 AIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 44 ~~~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.......++|||+|||+++++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3334567899999999999999999999999998433222222268899999999999999999999999999999987
No 87
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.6e-20 Score=113.11 Aligned_cols=73 Identities=34% Similarity=0.635 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l 98 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVV 98 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEE
Confidence 458899999999999999999999999999999999988899999999999999999999987 9999999876
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=110.49 Aligned_cols=72 Identities=19% Similarity=0.345 Sum_probs=66.7
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCc-c
Q 043937 49 SSSKLFVGGISYNM------DDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNA-S 121 (123)
Q Consensus 49 ~~~~l~v~~L~~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~-~ 121 (123)
.+++|||+|||+.+ ++++|+++|++||.|..+.+. +.+|.++|||||+|.+.++|..|+..|||..+.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46789999999999 789999999999999999887 34799999999999999999999999999999998 6
Q ss_pred c
Q 043937 122 C 122 (123)
Q Consensus 122 ~ 122 (123)
|
T Consensus 92 l 92 (105)
T 2nlw_A 92 F 92 (105)
T ss_dssp E
T ss_pred E
Confidence 5
No 89
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.7e-19 Score=124.36 Aligned_cols=75 Identities=21% Similarity=0.393 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYG--YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
..++|||+|||+++++++|+++|+.|| .|..+.|++++.+|+++|||||+|.+.++|..||..||+..|.|++|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 567899999999999999999999999 999999999998999999999999999999999999999999999873
No 90
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=108.62 Aligned_cols=72 Identities=21% Similarity=0.298 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.+ .+.++.++ +|+++|||||+|.+.++|+.|+. +|+..+.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 456789999999999999999999999954 99999998 89999999999999999999995 89999999986
No 91
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=109.19 Aligned_cols=70 Identities=11% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC--ceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG--QVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~--~~~~g~~~~ 123 (123)
.+.++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.++|..|+..|++ ..+.|++|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 45688999999999999999999999999999999865 68999999999999999998864 689998873
No 92
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.80 E-value=4.3e-19 Score=120.66 Aligned_cols=74 Identities=24% Similarity=0.395 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.++|||+|||+++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|..|+..+|+..+.|+.|
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999876
No 93
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=113.62 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+. ||+..+.|++|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 456899999999999999999999999999886566666689999999999999999999999 99999999987
No 94
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=107.78 Aligned_cols=72 Identities=19% Similarity=0.271 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLR----EAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+ ++|++||.|..+.++.++.+ +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 355789999999999999999 99999999999999988753 8899999999999999999999999999986
No 95
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.80 E-value=1.5e-19 Score=115.62 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGY---VNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|..|+. +|+..+.|++|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 45688999999999999999999999999 88999999986 9999999999999999999999 99999999986
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=109.85 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=69.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEe-ecCCCCCceeEEEEEeCCHHHHHHHHHHhC--CceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGY-VNEARII-LDRETGRSRGFGFVTFSTVEEASSAIQALD--GQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~g~~kg~afv~f~~~~~a~~a~~~l~--~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|..||. |..+.++ .+..+|.++|||||+|.+.++|..|+..|| +..+.|++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 45688999999999999999999999998 9999998 777788999999999999999999999996 589999886
No 97
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=111.53 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCe-EEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYV-NEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.| ..+.++.++ +|.++|||||+|.+.++|..|+.. |+..+.|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 456889999999999999999999999999 889999998 899999999999999999999986 9999999876
No 98
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=9.1e-20 Score=104.87 Aligned_cols=71 Identities=30% Similarity=0.545 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 52 ~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
+|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+. +++..+.|++|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 48999999999999999999999999999999998889999999999999999999998 599999999873
No 99
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=8.7e-19 Score=113.73 Aligned_cols=76 Identities=33% Similarity=0.615 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|..|+..|||..+.|++|
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 3456789999999999999999999999999999999998899999999999999999999999999999999987
No 100
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=110.84 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC---eEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGY---VNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
.+.++|||+|||+++++++|+++|+.||. |..+.++.++. |.++|||||+|.+.++|..|+. +|+..+.|+.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 45688999999999999999999999988 89999999986 9999999999999999999998 999999999873
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=111.75 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLR----EAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
.+.++|||+|||+.+++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|..|+..|||..+.|++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 346789999999999999876 6999999999987743 578899999999999999999999999999999873
No 102
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=110.53 Aligned_cols=70 Identities=20% Similarity=0.372 Sum_probs=65.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.++|||+|||+++++++|+++|+.| .|..+.++.++. |+++|||||+|.+.++|..|+ .+|+..+.|+.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 85 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYV 85 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEE
Confidence 4689999999999999999999999 899999999975 999999999999999999999 699999999876
No 103
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=7.5e-19 Score=117.13 Aligned_cols=117 Identities=24% Similarity=0.465 Sum_probs=83.7
Q ss_pred ccceehhHHHHHHHhhHHHh----hcCCcccccCCCCCCCccccccCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEE
Q 043937 5 VGKRVIIMAFFSKVGNILRQ----TAGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEA 80 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~ 80 (123)
+|.+++...........+.. ..++.+.+.+................++|||+|||+++++++|+++|+.||.|..+
T Consensus 55 ~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v 134 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEE
T ss_pred cceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEE
Confidence 34444444443333333332 34555555554443333333334466899999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 81 RIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 81 ~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+..+..+|.++|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 135 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i 175 (196)
T 1l3k_A 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNC 175 (196)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEEC
T ss_pred EEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEE
Confidence 9999988899999999999999999999985 8999999876
No 104
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.6e-19 Score=115.26 Aligned_cols=75 Identities=36% Similarity=0.550 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 346789999999999999999999999999999999988889999999999999999999999999999999987
No 105
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=104.01 Aligned_cols=70 Identities=17% Similarity=0.396 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC--Cccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF--NASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~--g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.|+..||+..+. |++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 455688999999999999999999999999999988644 679999999999999999999999999 8876
No 106
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=1.8e-18 Score=112.34 Aligned_cols=74 Identities=28% Similarity=0.517 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 74 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTI 74 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceE
Confidence 35789999999999999999999999999999999998889999999999999999999999999999999876
No 107
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=104.63 Aligned_cols=73 Identities=38% Similarity=0.607 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 45678899999999999999999999874 56677787789999999999999999999999999999999887
No 108
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.78 E-value=1.7e-18 Score=107.16 Aligned_cols=72 Identities=21% Similarity=0.416 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+++|||+|||+++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34678999999999999999999999999999999865 5568999999999999999999999999999987
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-19 Score=107.90 Aligned_cols=69 Identities=13% Similarity=0.205 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc--eeCCccc
Q 043937 48 MSSSKLFVGGISY-NMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ--VTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~--~~~g~~~ 122 (123)
.++++|||+|||+ ++++++|+++|++||.|..+.++++ +|||||+|.+.++|..|++.||+. .+.|++|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 3568899999999 9999999999999999999999765 479999999999999999998865 5899886
No 110
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-20 Score=111.79 Aligned_cols=73 Identities=27% Similarity=0.475 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|..|++ ||+..+.|++|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 45678999999999999999999999999887 566666678999999999999999999998 99999999987
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.77 E-value=2.6e-18 Score=103.72 Aligned_cols=71 Identities=24% Similarity=0.480 Sum_probs=63.6
Q ss_pred cccCCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 44 AIRCMSSSKLFVGGISY-NMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 44 ~~~~~~~~~l~v~~L~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.......++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 33456788999999998 99999999999999999999883 6799999999999999999999999999887
No 112
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=105.84 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce--eCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQV--TFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~--~~g~~~ 122 (123)
.+++.|||+|||+++++++|+++|++||.|..+.++++ ||+|||+|.+.++|..|++.|++.. +.|++|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 45678999999999999999999999999999988743 6799999999999999999999886 778876
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=104.82 Aligned_cols=72 Identities=22% Similarity=0.514 Sum_probs=65.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.| .++.+ .+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 3457889999999999999999999999987 45555 478999999999999999999999999999999876
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.1e-18 Score=103.76 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=62.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh--CCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQAL--DGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l--~~~~~~g~~~ 122 (123)
.++++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..| ++..+.|++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 45688999999999999999999999999999988754 689999999999999999976 4678999887
No 115
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=6e-19 Score=109.17 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYG-YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|+.|++.|||..+.|++|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 457899999999999999999999999 899998853 3468999999999999999999999999999986
No 116
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=2.1e-18 Score=106.07 Aligned_cols=71 Identities=30% Similarity=0.554 Sum_probs=64.1
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 44 AIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 44 ~~~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.......++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|||..+.|++|
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3345677999999999999999999999999999999886 5799999999999999999999999999886
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.9e-18 Score=103.32 Aligned_cols=71 Identities=18% Similarity=0.304 Sum_probs=63.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|+.||.|. +.++. +.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34568999999999999999999999999996 55654 3568999999999999999999999999999987
No 118
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=110.04 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCe----EEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYV----NEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+++++++|+++|+.||.| ..+.++.+. +|+++|||||+|.+.++|..|+.. |+..+.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3456889999999999999999999999875 688898885 899999999999999999999985 9999998876
No 119
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.77 E-value=1.6e-18 Score=109.48 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeE--EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVN--EARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
...++|||+|||+++++++|+++|+.| .|. .+.++.++. |+++|||||+|.+.++|..|+. +++..+.|++|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 456789999999999999999999999 677 899999986 9999999999999999999998 578999999873
No 120
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.77 E-value=4.8e-19 Score=107.53 Aligned_cols=71 Identities=37% Similarity=0.658 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|..|+. ++..+.|++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l 78 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKL 78 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEE
Confidence 45789999999999999999999999999999999998 89999999999999999999998 8888888765
No 121
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=103.36 Aligned_cols=69 Identities=32% Similarity=0.496 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 45688999999999999999999999999999998754 5799999999999999999999999999987
No 122
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=104.86 Aligned_cols=65 Identities=25% Similarity=0.320 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
...++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|+.|++.||+..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 45688999999999999999999999999999999765 799999999999999999999999999
No 123
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=2.3e-18 Score=112.15 Aligned_cols=74 Identities=32% Similarity=0.502 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..|++..+.|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999876
No 124
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.77 E-value=3.7e-18 Score=111.71 Aligned_cols=74 Identities=36% Similarity=0.591 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC---ccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN---ASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g---~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|..|+..|||..+.+ ++|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 356789999999999999999999999999999999886 59999999999999999999999999998874 665
No 125
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.2e-18 Score=104.75 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc--eeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ--VTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~--~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|++. .+.|++|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45688999999999999999999999999999988754 689999999999999999988765 4888886
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=99.63 Aligned_cols=70 Identities=19% Similarity=0.391 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh-CCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQAL-DGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l-~~~~~~g~~~~ 123 (123)
...++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..| ++..+.|++|.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 45678999999999999999999999999999999764 679999999999999999988 99999999874
No 127
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=3.3e-18 Score=111.89 Aligned_cols=74 Identities=24% Similarity=0.544 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|..|+..|||..+.|++|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 166 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 166 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEE
Confidence 46889999999999999999999999999999999998889999999999999999999999999999999987
No 128
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=100.39 Aligned_cols=67 Identities=28% Similarity=0.494 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 456889999999999999999999999999999986 4699999999999999999999999999987
No 129
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.1e-18 Score=109.73 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=65.3
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCC----HHH----HHHHHH--HhCCce
Q 043937 51 SKLFVGGI----SYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFST----VEE----ASSAIQ--ALDGQV 116 (123)
Q Consensus 51 ~~l~v~~L----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~----~~~----a~~a~~--~l~~~~ 116 (123)
+.|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||.++|||||+|.+ +++ |..|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 333 788887 789999
Q ss_pred eCCccc
Q 043937 117 TFNASC 122 (123)
Q Consensus 117 ~~g~~~ 122 (123)
+.|++|
T Consensus 83 I~Gr~i 88 (136)
T 2j8a_A 83 IMGFKF 88 (136)
T ss_dssp ETTEEE
T ss_pred ecCcEE
Confidence 999986
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.5e-18 Score=103.04 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
...++|||+|||+++++++|+++|+.||.|..+.+.. ++|||||+|.+.++|..|+..||+..+.|++|.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 94 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLR 94 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4568899999999999999999999999999999873 468999999999999999999999999999874
No 131
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=106.72 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC--ceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG--QVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~--~~~~g~~~ 122 (123)
.++++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|++ ..+.|++|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 45688999999999999999999999999999999865 68999999999999999998874 57889887
No 132
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.76 E-value=6.6e-18 Score=109.62 Aligned_cols=74 Identities=36% Similarity=0.668 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
...++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|..|+..|||..+.|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 34678999999999999999999999999999999999888999999999999999999999999999999976
No 133
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=6.2e-19 Score=113.08 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
...++|||+|||+++++++|+++|++|| +..+.++.++. |+++|||||+|.+.++|..|+ .+|+..+.|++|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 4567899999999999999999999999 77999999985 999999999999999999999 7999999999874
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=3.9e-18 Score=113.35 Aligned_cols=73 Identities=27% Similarity=0.464 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.||.|..+.+..+. +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l 159 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 159 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 46899999999999999999999999999999999988 89999999999999999999999999999999987
No 135
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=4e-18 Score=127.04 Aligned_cols=76 Identities=22% Similarity=0.526 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
...++|||+|||+.+++++|.++|+.||.|..|.|+.+..+|.++|||||+|.+.++|..||..||+..|.|++|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 4567899999999999999999999999999999999988999999999999999999999999999999998873
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=8.1e-18 Score=109.51 Aligned_cols=75 Identities=32% Similarity=0.575 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC--ccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN--ASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g--~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|..|+..|||..+.| ++|
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 456889999999999999999999999999999999998889999999999999999999999999999987 665
No 137
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=6.7e-20 Score=113.87 Aligned_cols=76 Identities=26% Similarity=0.412 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEE--------EEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNE--------ARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
.+.++|||+|||+++++++|+++|+.||.|.. +.+..++.+|.++|||||+|.+.++|..|+..||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45678999999999999999999999999998 8899888889999999999999999999999999999999
Q ss_pred cccC
Q 043937 120 ASCV 123 (123)
Q Consensus 120 ~~~~ 123 (123)
++|.
T Consensus 85 ~~l~ 88 (116)
T 2lcw_A 85 NPIK 88 (116)
Confidence 9873
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2.1e-18 Score=103.68 Aligned_cols=72 Identities=17% Similarity=0.443 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLR----EAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.++++|||+|||+++++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 456889999999999999999 9999999999998863 47788999999999999999999999999999886
No 139
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=3.2e-18 Score=106.33 Aligned_cols=68 Identities=24% Similarity=0.293 Sum_probs=61.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.++.+ |||||+|.+.++|+.|+..||+..+.|++|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~ 81 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 81 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEe
Confidence 34688999999999999999999999999999998755 799999999999999999999999999873
No 140
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7e-18 Score=103.62 Aligned_cols=71 Identities=28% Similarity=0.570 Sum_probs=65.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 46 RCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 46 ~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.....++|||+|||+++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 91 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 91 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3456789999999999999999999999999999999866 5799999999999999999999999999886
No 141
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=7.8e-18 Score=112.17 Aligned_cols=74 Identities=39% Similarity=0.670 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+.. ++..+.|++|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 3457899999999999999999999999999999999988899999999999999999999975 8999999876
No 142
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4e-18 Score=105.27 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.++|||+|||+++++++|+++|++||.|..+.+.. ++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 457899999999999999999999999999998863 46799999999999999999999999999987
No 143
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=104.29 Aligned_cols=67 Identities=30% Similarity=0.561 Sum_probs=63.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
++|||+|||+++++++|+++|++||.|..+.+..+ ++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 47999999999999999999999999999999876 57899999999999999999999999999886
No 144
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=7.8e-18 Score=108.77 Aligned_cols=71 Identities=28% Similarity=0.561 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 456789999999999999999999999999999999766 47899999999999999999999999999987
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=3.4e-18 Score=116.17 Aligned_cols=72 Identities=25% Similarity=0.590 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...+|||+|||+++++++|+++|+.||.|..+.++++. +.++|||||+|.+.++|..|++.|||..+.|++|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i 173 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 173 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEE
Confidence 45789999999999999999999999999999999884 5589999999999999999999999999999987
No 146
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.7e-17 Score=112.02 Aligned_cols=75 Identities=16% Similarity=0.456 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i 197 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 197 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEE
Confidence 456899999999999999999999999999999999998899999999999999999999999999999999987
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-17 Score=100.63 Aligned_cols=68 Identities=25% Similarity=0.540 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISY-NMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
.+.++|||+|||+ ++++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..||+..+.|++|.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 76 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLI 76 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4578899999998 99999999999999999999883 57999999999999999999999999999874
No 148
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.74 E-value=3.1e-17 Score=109.43 Aligned_cols=75 Identities=25% Similarity=0.532 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 186 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKL 186 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 456899999999999999999999999999999999998889999999999999999999999999999999987
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=98.64 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
..++|||+|||+++++++|+++|+.||.|..+ +.++.+|. ||||+|.+.++|..|+. ||+..+.|++|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 45789999999999999999999999999987 55555555 99999999999999999 999999999873
No 150
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-17 Score=99.18 Aligned_cols=68 Identities=28% Similarity=0.471 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcC--CCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKY--GYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3467889999999999999999999999 899988763 5699999999999999999999999999876
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.7e-17 Score=102.05 Aligned_cols=68 Identities=24% Similarity=0.501 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 48 MSSSKLFVGGISYN-MDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 48 ~~~~~l~v~~L~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
...++|||+|||++ +++++|+++|++||.|..+.+ ++|||||+|.+.++|..|+..||+..+.|++|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 93 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLD 93 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34588999999999 999999999999999999988 367999999999999999999999999999874
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=105.03 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC--ceeCCccc
Q 043937 47 CMSSSKLFVGGISYN-MDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG--QVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~--~~~~g~~~ 122 (123)
..++++|||+|||++ +++++|+++|++||.|..+.+.+. +|||||+|.+.++|..|+..||+ ..+.|++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345789999999998 999999999999999999998643 68999999999999999998864 45889886
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.4e-17 Score=112.50 Aligned_cols=74 Identities=26% Similarity=0.520 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l 100 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNI 100 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeE
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999886
No 154
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=103.34 Aligned_cols=70 Identities=19% Similarity=0.406 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 83 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 83 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 356789999999999999999999999988766 2368899999999999999999999999999999886
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=100.27 Aligned_cols=71 Identities=25% Similarity=0.308 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEA-RIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+ .++.++.+| .|||+|.+.++|..|+..||+..+.|++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 346789999999999999999999999999999 477776433 39999999999999999999999999987
No 156
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=98.97 Aligned_cols=68 Identities=34% Similarity=0.500 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|||+++++++|+++|++||.|..+.+. ++||||+|.+.++|..|+..||+..+.|++|
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 3456889999999999999999999999999999986 3399999999999999999999999999876
No 157
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=105.53 Aligned_cols=67 Identities=25% Similarity=0.522 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCC---CCceeEEEEEeCCHHHHHHHHHHh---CCc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRET---GRSRGFGFVTFSTVEEASSAIQAL---DGQ 115 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~kg~afv~f~~~~~a~~a~~~l---~~~ 115 (123)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|..|+..| +|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 3457899999999999999999999999999 778777666 799999999999999999999988 555
No 158
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=1.4e-18 Score=113.19 Aligned_cols=73 Identities=32% Similarity=0.595 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|..|+. +++..+.|++|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 158 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKI 158 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEE
Confidence 35689999999999999999999999999999999998889999999999999999999998 89999999987
No 159
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=98.20 Aligned_cols=67 Identities=27% Similarity=0.458 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.+. ++||||+|.+.++|..|+..||+..+.|++|
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 456789999999999999999999999999999986 3399999999999999999999999999987
No 160
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=2.9e-17 Score=107.39 Aligned_cols=71 Identities=35% Similarity=0.542 Sum_probs=66.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCC--CceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETG--RSRGFGFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g--~~kg~afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
+.++|||+|||+++++++|+++|++||.|..+.+++++.+| .++|||||+|.+.++|..|+..||+..+.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 74 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLP 74 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEcc
Confidence 45789999999999999999999999999999999998766 899999999999999999999999988764
No 161
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-17 Score=107.56 Aligned_cols=71 Identities=23% Similarity=0.484 Sum_probs=66.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
++|||+|||+++++++|+++|+.||.|.++.+..++ +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 479999999999999999999999999999999887 48899999999999999999999999999999876
No 162
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=106.33 Aligned_cols=72 Identities=19% Similarity=0.476 Sum_probs=64.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEE--------EEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEA--------RIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~--------~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
...++|||+|||+++++++|+++|+.||.|..+ .+. .+|.++|||||+|.+.++|..|+..||+..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 456889999999999999999999999998763 222 268899999999999999999999999999999
Q ss_pred ccc
Q 043937 120 ASC 122 (123)
Q Consensus 120 ~~~ 122 (123)
++|
T Consensus 120 ~~l 122 (143)
T 3egn_A 120 KPM 122 (143)
T ss_dssp EEC
T ss_pred cEE
Confidence 987
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=1.8e-17 Score=98.14 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=62.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|..|++.||+..+.|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 45789999999999999999999999 99999884 468899999999999999999999999999986
No 164
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-17 Score=96.77 Aligned_cols=68 Identities=26% Similarity=0.419 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
....++|||+|| ++++++|+++|++||.|..+.+. .++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 346689999996 89999999999999999999884 357899999999999999999999999999876
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=3e-17 Score=96.69 Aligned_cols=67 Identities=30% Similarity=0.577 Sum_probs=61.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKY----G-------YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVT 117 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~ 117 (123)
..++|||+|||+++++++|+++|++| | .|..+.+..+ +|||||+|.+.++|..|+ .||+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45789999999999999999999999 8 8999988644 689999999999999999 9999999
Q ss_pred CCccc
Q 043937 118 FNASC 122 (123)
Q Consensus 118 ~g~~~ 122 (123)
.|++|
T Consensus 78 ~g~~l 82 (87)
T 2hzc_A 78 QGQSL 82 (87)
T ss_dssp TTEEC
T ss_pred CCeEE
Confidence 99987
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=3.4e-17 Score=106.56 Aligned_cols=72 Identities=35% Similarity=0.719 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
++++|||+|||+++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|..|+.. +..+.|++|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i 73 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVI 73 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEc
Confidence 357899999999999999999999999999999999988899999999999999999999984 566777665
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=4.8e-17 Score=110.29 Aligned_cols=70 Identities=21% Similarity=0.360 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGIS-YNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.++++|||+||| +.+++++|+++|+.||.|.+++++.++ +|||||+|.+.++|..|++.|||..+.|++|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 72 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKM 72 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 356889999999 899999999999999999999997653 6899999999999999999999999999987
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=102.64 Aligned_cols=63 Identities=25% Similarity=0.463 Sum_probs=57.4
Q ss_pred CCCeEEE--cCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 043937 49 SSSKLFV--GGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVT 117 (123)
Q Consensus 49 ~~~~l~v--~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~ 117 (123)
++.+||| +||++++++++|+++|++||.|..+.+.. .+|||||+|.+.++|..|+..|||.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4577999 77999999999999999999999987753 268999999999999999999999988
No 169
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=98.63 Aligned_cols=68 Identities=22% Similarity=0.397 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCC-eEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC-ceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGY-VNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG-QVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~-~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|..|+..||+ ..+.|++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 34578999999999999999999999999 6655552 367999999999999999999999 99999886
No 170
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=6.4e-17 Score=98.34 Aligned_cols=66 Identities=18% Similarity=0.457 Sum_probs=61.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.||.|..+.+. ++||||+|.+.++|..|+..||+..+.|++|
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 45789999999999999999999999999999885 3599999999999999999999999999876
No 171
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.69 E-value=1.6e-16 Score=106.86 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|++||.|..+.+.++. +|.++|||||+|.+.++|..|+..+ +..+.|++|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l 179 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDL 179 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEEC
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEE
Confidence 45789999999999999999999999999999999887 5999999999999999999999755 458999886
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=3e-16 Score=110.27 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 345789999999999999999999999999999999998899999999999999999999999999999999886
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=94.97 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=57.5
Q ss_pred CCCeEEEcCCCCCCCHHH----HHHHhhcC-CCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcccC
Q 043937 49 SSSKLFVGGISYNMDDNS----LREAFAKY-GYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASCV 123 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~----l~~~f~~~-g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~~ 123 (123)
..+.|||+|||+++++++ |+++|++| |+|..+ +| |+|||+|.+.++|++|++.|||..+.||+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344599999999999987 55899999 499988 23 8999999999999999999999999999873
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.6e-16 Score=104.07 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC--ccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN--ASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g--~~~ 122 (123)
..+|||+||++.+++++|+++|++||.|.++.+..+. ++|||||+|.+.++|+.|++.|||..+.| ++|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 3569999999999999999999999999999986442 47899999999999999999999999966 655
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.2e-16 Score=94.92 Aligned_cols=67 Identities=34% Similarity=0.452 Sum_probs=54.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC--Cccc
Q 043937 47 CMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF--NASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~--g~~~ 122 (123)
..+.++|||+|||+++++++|+++|++||.|.++.++++ ++|||||+|.+.++|.. +++..+. |++|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 346688999999999999999999999999999999764 68999999999999873 5665543 5543
No 176
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=9.3e-17 Score=113.28 Aligned_cols=96 Identities=17% Similarity=0.293 Sum_probs=74.6
Q ss_pred cCCcccccCCCCCCCcccc-ccCCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCC-CCCceeEEEEEeCCH
Q 043937 26 AGKRISCESSISNPSIYQA-IRCMSSSKLFVGGISYN-MDDNSLREAFAKYGYVNEARIILDRE-TGRSRGFGFVTFSTV 102 (123)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~v~~L~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~g~~kg~afv~f~~~ 102 (123)
.++++.+.++.+....... ......++|||+|||++ +++++|+++|+.||.|..+.++.+.. +|.++|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 3455555554333322222 23456789999999999 99999999999999999999988875 499999999999999
Q ss_pred HHHHHHHHHhCCceeCCccc
Q 043937 103 EEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 103 ~~a~~a~~~l~~~~~~g~~~ 122 (123)
++|..|+ .|||..+.|++|
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEE
T ss_pred HHHHHHH-HhcCCEECCcEE
Confidence 9999999 999999999987
No 177
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2.7e-16 Score=99.56 Aligned_cols=65 Identities=23% Similarity=0.394 Sum_probs=59.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeE-EEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGF-GFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~-afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
...|||+||++.+++++|+++|++||.|.++.+..+. +|+ |||+|.+.++|..|++.|||..+.|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 3568999999999999999999999999999887542 577 9999999999999999999999987
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=7.9e-17 Score=105.73 Aligned_cols=88 Identities=19% Similarity=0.372 Sum_probs=71.8
Q ss_pred cCCcccccCCCCCCCccccccCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHH
Q 043937 26 AGKRISCESSISNPSIYQAIRCMSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEA 105 (123)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a 105 (123)
.++++.+.+..+... ......++|||+|||+++++++|+++|++||.|..+ ..+|.++|||||+|.+.++|
T Consensus 79 ~g~~l~v~~~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 79 FGNEIKLEKPKGRDS----KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp TTEEEEEECCCCSSC----STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHH
T ss_pred CCeEEEEecCCCccc----cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHH
Confidence 355655555443322 122346789999999999999999999999988776 34788999999999999999
Q ss_pred HHHHHHhCCceeCCccc
Q 043937 106 SSAIQALDGQVTFNASC 122 (123)
Q Consensus 106 ~~a~~~l~~~~~~g~~~ 122 (123)
..|+..|||..+.|++|
T Consensus 150 ~~A~~~l~g~~~~g~~i 166 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSV 166 (175)
T ss_dssp HHHHHHHTEEEETTEEE
T ss_pred HHHHHHhCCCEECCeEE
Confidence 99999999999999886
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=8.4e-16 Score=94.06 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhcCCCeEEEEEeecCCC-CCceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 48 MSSSKLFVGGISY-----NMDDNSLREAFAKYGYVNEARIILDRET-GRSRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 48 ~~~~~l~v~~L~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
..++.|++.|+.. +-++++|++.|++||.|.++.++.++.+ +.++|++||+|.+.++|..|+..|||..+.|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467899999963 2368999999999999999999988643 678999999999999999999999999999998
Q ss_pred c
Q 043937 122 C 122 (123)
Q Consensus 122 ~ 122 (123)
|
T Consensus 86 i 86 (105)
T 2pe8_A 86 V 86 (105)
T ss_dssp C
T ss_pred E
Confidence 7
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.66 E-value=3.4e-16 Score=109.99 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNM-DDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|..|+..|||..+.|++|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 256 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHL 256 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEE
Confidence 467889999999994 999999999999999999999887 79999999999999999999999999999999987
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=4.1e-16 Score=109.49 Aligned_cols=72 Identities=17% Similarity=0.438 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLR----EAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+ ++|+.||.|..+.+.. +|.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 456889999999999999977 8999999999998865 58899999999999999999999999999999876
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=6e-16 Score=106.10 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 47 CMSSSKLFVGGISY-NMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 47 ~~~~~~l~v~~L~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+.++|||+|||+ ++++++|+++|+.||.|..+.+..++ +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 45678999999999 99999999999999999999998774 6899999999999999999999999999886
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=4.3e-16 Score=97.57 Aligned_cols=67 Identities=27% Similarity=0.440 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|| ++++++|+++|+.||.|..+.+. .++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l 103 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 103 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 46789999996 69999999999999999999885 357899999999999999999999999999887
No 184
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=7.8e-16 Score=96.79 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=58.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeE-EEEEeCCHHHHHHHHHHhCCceeCCc
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGF-GFVTFSTVEEASSAIQALDGQVTFNA 120 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~-afv~f~~~~~a~~a~~~l~~~~~~g~ 120 (123)
..|||+||++.+++++|+++|++||.|.++.+... .|| |||+|.+.++|..|++.|||..+.|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~ 90 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAG 90 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 45889999999999999999999999999998642 276 99999999999999999999999873
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=6.9e-16 Score=104.57 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCe--EEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYV--NEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
++.+|||+|||+++++++|+++|++||.| ..+++..+. |..+|+|||+|.+.++|..|+..||+..+.|+.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 45789999999999999999999999999 888887764 556799999999999999999999999998874
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=5.6e-16 Score=103.62 Aligned_cols=69 Identities=22% Similarity=0.357 Sum_probs=64.5
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISY-NMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
++++|||+|||+ ++++++|+++|+.||.|..+.+..++ +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 71 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPI 71 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEE
Confidence 568899999999 99999999999999999999997764 6899999999999999999999999999886
No 187
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=2.3e-15 Score=105.04 Aligned_cols=73 Identities=26% Similarity=0.446 Sum_probs=65.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCc-eeC---Cccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQ-VTF---NASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~-~~~---g~~~ 122 (123)
++.+|||+|||+.+++++|+++|+.||.|..+.++.+. +|.++|||||+|.+.++|..|+..||+. .+. +++|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 45789999999999999999999999999999999994 8999999999999999999999999554 443 6654
No 188
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.3e-16 Score=92.56 Aligned_cols=68 Identities=34% Similarity=0.426 Sum_probs=54.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|+.++.. ...+.|++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l 70 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISV 70 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEE
Confidence 34688999999999999999999999999999998754 579999999999998754321 223355544
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.61 E-value=2.2e-15 Score=104.27 Aligned_cols=65 Identities=26% Similarity=0.448 Sum_probs=60.1
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 043937 47 CMSSSKLFVGGISYNM---------DDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVT 117 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~ 117 (123)
....++|||+||+..+ ++++|+++|++||.|.+++++.+ +|||||+|.+.++|+.|+..|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467899999999998 79999999999999999999754 68999999999999999999999999
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=3.2e-15 Score=104.34 Aligned_cols=69 Identities=29% Similarity=0.531 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.+.++ +|||||+|.+.++|..|+..||+..+.|++|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 45678999999999999999999999999999998544 6899999999999999999999999999876
No 191
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=5.2e-15 Score=103.83 Aligned_cols=70 Identities=23% Similarity=0.333 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC-Cccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF-NASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~-g~~~ 122 (123)
...++|||+|||+++++++|+++|+.||.|..+.+..++ +|||||+|.+.++|..|+..|||..+. |++|
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 356889999999999999999999999999999998654 589999999999999999999999999 8876
No 192
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=2.3e-16 Score=103.47 Aligned_cols=73 Identities=27% Similarity=0.475 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+.++|||+|||+++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|..|++ ||+..+.|++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 83 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 83 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEE
Confidence 45688999999999999999999999987655 233344468889999999999999999995 99999999876
No 193
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=6.8e-15 Score=103.70 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYG-YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..++|||+|||+++++++|+++|+.|| .|..+.++.+.. |.++|||||+|.+.++|..|+..||+..+.|++|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 568899999999999999999999999 999999988874 8899999999999999999999999999999876
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.57 E-value=1.7e-15 Score=92.50 Aligned_cols=68 Identities=22% Similarity=0.313 Sum_probs=59.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 55 VGGISYNMDDNSLREAF------------AKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 55 v~~L~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.+||+.+++++|++.| ++||.|.++.+.++. +|.++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777888777666 999999999999876 47899999999999999999999999999999987
Q ss_pred C
Q 043937 123 V 123 (123)
Q Consensus 123 ~ 123 (123)
.
T Consensus 99 ~ 99 (104)
T 1jmt_A 99 H 99 (104)
T ss_dssp C
T ss_pred E
Confidence 4
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=96.72 Aligned_cols=70 Identities=21% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC-CcccC
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYG-YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF-NASCV 123 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~-g~~~~ 123 (123)
++++|||+|||+++++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|..|+..|||..+. |++|.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 478899999999999999999999999 9999998654 2689999999999999999999999999 88763
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=7.9e-15 Score=95.66 Aligned_cols=67 Identities=28% Similarity=0.556 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKY----G-------YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVT 117 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~ 117 (123)
+.++|||+|||+++++++|+++|++| | .|..+.+.. ++|||||+|.+.++|..|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35789999999999999999999999 6 677776643 3689999999999999999 8999999
Q ss_pred CCccc
Q 043937 118 FNASC 122 (123)
Q Consensus 118 ~g~~~ 122 (123)
.|++|
T Consensus 76 ~g~~i 80 (172)
T 2g4b_A 76 QGQSL 80 (172)
T ss_dssp TTEEC
T ss_pred cCcee
Confidence 99876
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=2.1e-14 Score=87.82 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=63.1
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHHhhcCCCeEEEEEeecCCC--CCceeEEEEEeCCHHHHHHHHHHhCCce
Q 043937 49 SSSKLFVGGI--SYNMD--------DNSLREAFAKYGYVNEARIILDRET--GRSRGFGFVTFSTVEEASSAIQALDGQV 116 (123)
Q Consensus 49 ~~~~l~v~~L--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--g~~kg~afv~f~~~~~a~~a~~~l~~~~ 116 (123)
+++.|.+.|+ |.+.. +++|++.|++||.|.++.+++++.+ +.++|++||+|.+.++|..|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567888887 33333 3689999999999999999888653 3679999999999999999999999999
Q ss_pred eCCcccC
Q 043937 117 TFNASCV 123 (123)
Q Consensus 117 ~~g~~~~ 123 (123)
+.||+|.
T Consensus 84 f~GR~i~ 90 (105)
T 3v4m_A 84 FANRVVV 90 (105)
T ss_dssp ETTEECE
T ss_pred eCCCEEE
Confidence 9999873
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6e-14 Score=86.44 Aligned_cols=71 Identities=27% Similarity=0.380 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCce
Q 043937 48 MSSSKLFVGGISYNMD-----------DNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQV 116 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~ 116 (123)
..+++|+|.||..... +++|+++|++||.|..+.+ .++ .++|||||+|.+.++|..|+..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568899999944332 5799999999999999966 443 378999999999999999999999999
Q ss_pred eCCccc
Q 043937 117 TFNASC 122 (123)
Q Consensus 117 ~~g~~~ 122 (123)
+.|++|
T Consensus 89 ~~gr~l 94 (112)
T 2dit_A 89 FGGRQI 94 (112)
T ss_dssp ETTEEC
T ss_pred ECCcEE
Confidence 999987
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=1.1e-14 Score=96.94 Aligned_cols=67 Identities=27% Similarity=0.569 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKY----G-------YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVT 117 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~ 117 (123)
..++|||+|||+++++++|+++|+.| | .|..+.+ +.++|||||+|.+.++|..|+ .||+..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35789999999999999999999999 5 5666655 345789999999999999999 8999999
Q ss_pred CCccc
Q 043937 118 FNASC 122 (123)
Q Consensus 118 ~g~~~ 122 (123)
.|++|
T Consensus 76 ~g~~i 80 (198)
T 2yh0_A 76 QGQSL 80 (198)
T ss_dssp TTEEE
T ss_pred cCceE
Confidence 99876
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=3.8e-14 Score=97.07 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC-Cccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKYG-YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF-NASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~-g~~~ 122 (123)
.+++|||+|||+++++++|+++|+.|| .|..+.+..+ .+|+|||+|.+.++|..|+..|||..+. |++|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l 220 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 220 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence 468899999999999999999999999 9999998543 2679999999999999999999999999 8876
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=7.3e-14 Score=87.08 Aligned_cols=74 Identities=24% Similarity=0.284 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhhcCCCeEEEEEeecCC----CCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 49 SSSKLFVGGISY-----NMDDNSLREAFAKYGYVNEARIILDRE----TGRSRGFGFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 49 ~~~~l~v~~L~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
+++.|++.|+-. +--+++|++.|++||.|.++.+++++. ++.++|++||+|.+.++|..|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 456788888742 123689999999999999999998864 35678999999999999999999999999999
Q ss_pred ccc
Q 043937 120 ASC 122 (123)
Q Consensus 120 ~~~ 122 (123)
|+|
T Consensus 99 R~i 101 (118)
T 3ue2_A 99 RKV 101 (118)
T ss_dssp EEC
T ss_pred cEE
Confidence 987
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=2.9e-14 Score=103.22 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=58.0
Q ss_pred CCCCeEEEcC--CCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043937 48 MSSSKLFVGG--ISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF 118 (123)
Q Consensus 48 ~~~~~l~v~~--L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~ 118 (123)
..+.+|||+| |++.+++++|+++|++||+|..+.+.. +||||||+|.+.++|+.|++.|||.++.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 4567899999 578999999999999999999987642 4789999999999999999999999884
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.9e-12 Score=78.52 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=59.4
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCC-HHHHHHHHHHhC--CceeCCcc
Q 043937 48 MSSSKLFVGGISYN-MDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFST-VEEASSAIQALD--GQVTFNAS 121 (123)
Q Consensus 48 ~~~~~l~v~~L~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~-~~~a~~a~~~l~--~~~~~g~~ 121 (123)
+.++.|||+||+++ ++.++|+++|+.||+|.+|.+..+.. .|||+|.+ +.+|..|++.+| +..|.|..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 56889999999999 99999999999999999999987754 69999999 899999999985 55565543
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=6.5e-12 Score=76.04 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 60 YNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 60 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+++++|+++|++||.|..+.++ +.++|||||+|.+.++|..|++.+++ +.|++|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 568999999999999999999987 45789999999999999999997544 566665
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=7.8e-12 Score=77.39 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=57.4
Q ss_pred CCCeEEEcCCCCCCC----------HHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeC
Q 043937 49 SSSKLFVGGISYNMD----------DNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTF 118 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~ 118 (123)
.++.|.+.|+=..-. +++|++.|++||.|.++.+.++. ++|++||+|.+.++|..|+..|||..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456677776643221 25789999999999999886553 4899999999999999999999999999
Q ss_pred Cccc
Q 043937 119 NASC 122 (123)
Q Consensus 119 g~~~ 122 (123)
|++|
T Consensus 82 GR~i 85 (114)
T 3s6e_A 82 GKMI 85 (114)
T ss_dssp TEEC
T ss_pred CEEE
Confidence 9987
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=5.2e-10 Score=76.05 Aligned_cols=61 Identities=30% Similarity=0.315 Sum_probs=54.6
Q ss_pred CCHHHHHHHhhcCCCeEEEEEeecC----CCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 62 MDDNSLREAFAKYGYVNEARIILDR----ETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 62 ~~~~~l~~~f~~~g~i~~~~~~~~~----~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
-.+++|.+.|++||.|.++.+.++. .+|.++|++||+|.+.++|.+|+..|||..+.||+|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i 205 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 205 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEE
Confidence 3557899999999999999998554 345899999999999999999999999999999987
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=2.9e-10 Score=67.17 Aligned_cols=67 Identities=28% Similarity=0.360 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCC----CCCH----HHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCC
Q 043937 48 MSSSKLFVGGISY----NMDD----NSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFN 119 (123)
Q Consensus 48 ~~~~~l~v~~L~~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g 119 (123)
+++.+|+|...+. ...+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|+. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567788877662 2333 5789999999999999998763 8999999999999998 99999999
Q ss_pred cccC
Q 043937 120 ASCV 123 (123)
Q Consensus 120 ~~~~ 123 (123)
+.|+
T Consensus 76 r~Lk 79 (91)
T 2dnr_A 76 RTIT 79 (91)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9873
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=1.6e-09 Score=64.38 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=56.6
Q ss_pred CCCCCeEEEcCCCCC------CCH---HHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCcee
Q 043937 47 CMSSSKLFVGGISYN------MDD---NSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVT 117 (123)
Q Consensus 47 ~~~~~~l~v~~L~~~------~~~---~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~ 117 (123)
.+++.+|+|..++.+ ..+ .+|.+.|..||.|..+++..++ +||+|.+.+.|.+|+. |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 456778999888743 232 4688999999999999998773 9999999999999998 999999
Q ss_pred CCccc
Q 043937 118 FNASC 122 (123)
Q Consensus 118 ~g~~~ 122 (123)
.|+.|
T Consensus 83 ~Gr~L 87 (95)
T 1ufw_A 83 KGRAV 87 (95)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 99976
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=7.4e-08 Score=58.52 Aligned_cols=68 Identities=9% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-----CCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 49 SSSKLFVGGISYNMDDNSLREAFAKY-----GYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 49 ~~~~l~v~~L~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
+.++|-+-|||..+++..|+.++..+ |++..+.+..+. +-|+|+|.+...|.+|.-+|+|.++.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 35678899999999999999999999 999999998775 369999999999999998999999999986
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.21 E-value=1.9e-05 Score=46.56 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=58.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--ceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGR--SRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~--~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
++|.|.+||+.++++++.+.++....+.....+....+.+ .-.-|||.|.+.+++....+.++|..+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 4688999999999999999999988877776655443322 3567899999999999999999999887654
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=4.8e-05 Score=45.75 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=54.4
Q ss_pred CeEEEcCCCCCC-CH----HHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 51 SKLFVGGISYNM-DD----NSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 51 ~~l~v~~L~~~~-~~----~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
++|++.||+.++ .. +.++++|..|++.........-. -..|.|.+.++|.+|...||+..+.|+++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCcee
Confidence 569999998864 22 56789999999888876665532 56899999999999999999999999876
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=7.4e-05 Score=46.06 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=52.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
.+.+-|.|-+.|+... ..+-.+|++||.|.+..... ...+-.|.|.++.+|++||. .||..+.|.-
T Consensus 22 ~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~ 87 (119)
T 1wwh_A 22 LDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESI 87 (119)
T ss_dssp GGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTE
T ss_pred CCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCE
Confidence 3456688989998864 55667799999999887621 23589999999999999996 7999887643
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.00036 Score=41.86 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc-----CCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAK-----YGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
..+|.|.|||+.+.++.|+-+|++ -|+|..+.... +-|+|+|.+...|++.+.. ..+.+.+.+|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 467999999999999999999986 25777776632 3689999999999999863 2445554443
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.57 E-value=0.00016 Score=42.94 Aligned_cols=72 Identities=8% Similarity=0.111 Sum_probs=53.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCC--ceeEEEEEeCCHHHHHHHHHHhCCceeCCcc
Q 043937 50 SSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGR--SRGFGFVTFSTVEEASSAIQALDGQVTFNAS 121 (123)
Q Consensus 50 ~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~--~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~ 121 (123)
+.+|.|..||+.+|++++.+.++..-++.....+....+-+ .-.-|||.|.+.+++....+.++|..+.+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~k 82 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSK 82 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCC
Confidence 35699999999999999998888765544333322221111 2356899999999999999999999887754
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.49 E-value=0.00083 Score=39.88 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=42.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHh
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQAL 112 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l 112 (123)
+.+++ ++|....-.||.++|+.||.|.--.+ -| --|||.|.+++.|..|+..+
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi-dD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-DD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE-ET-------TEEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEE-cC-------CeEEEEecCHHHHHHHHHhc
Confidence 44666 99999999999999999995433333 23 26999999999999999876
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.07 E-value=0.0016 Score=38.70 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=42.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhC
Q 043937 52 KLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALD 113 (123)
Q Consensus 52 ~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~ 113 (123)
.+++ ++|....-.||.++|+.||.|.--.+ -| --|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi-dD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-DD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE-ET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEE-cC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3556 99999999999999999995433333 23 269999999999999998764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.70 E-value=0.001 Score=49.90 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=42.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHH
Q 043937 48 MSSSKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQ 110 (123)
Q Consensus 48 ~~~~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~ 110 (123)
...++|+|. .|..+++.+|.++|++||+|..+....+. | -|++|+|.+.+++..++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 345889998 68899999999999999999999776543 3 699999999988886653
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.66 E-value=0.0015 Score=41.51 Aligned_cols=34 Identities=12% Similarity=0.146 Sum_probs=27.9
Q ss_pred EEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 043937 79 EARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG 114 (123)
Q Consensus 79 ~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~ 114 (123)
.+++.++. ..++|||||+|.+.++|+.|+..+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 35666664 46899999999999999999987764
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.29 E-value=0.0031 Score=39.40 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=47.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEE-EEee------------cCCCC-CceeEEEEEeCCHHHHHHHHHHhCCce
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEA-RIIL------------DRETG-RSRGFGFVTFSTVEEASSAIQALDGQV 116 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~-~~~~------------~~~~g-~~kg~afv~f~~~~~a~~a~~~l~~~~ 116 (123)
.-|.|=+.|++.+.. +-++|++||.|.+- .... .+..+ ....+-.|+|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 447777888777655 45569999998762 1110 00011 134688999999999999996 89999
Q ss_pred eCCc
Q 043937 117 TFNA 120 (123)
Q Consensus 117 ~~g~ 120 (123)
+.|.
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9886
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.87 E-value=0.013 Score=36.85 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=28.9
Q ss_pred CCceeEEEEEeCCHHHHHHHHHHh-CCceeCCccc
Q 043937 89 GRSRGFGFVTFSTVEEASSAIQAL-DGQVTFNASC 122 (123)
Q Consensus 89 g~~kg~afv~f~~~~~a~~a~~~l-~~~~~~g~~~ 122 (123)
...+|+++++|.+.++|+.|+..+ |+..+.| ++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~ 43 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EW 43 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ce
Confidence 466999999999999999999999 8888877 43
No 221
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=92.08 E-value=0.039 Score=33.07 Aligned_cols=62 Identities=5% Similarity=0.043 Sum_probs=15.6
Q ss_pred ccceehhHHHHHHHhhHHHhh-----cCCcccccCCCCCCCcc--ccccCCCCCeEEEcCCCCCCCHHH
Q 043937 5 VGKRVIIMAFFSKVGNILRQT-----AGKRISCESSISNPSIY--QAIRCMSSSKLFVGGISYNMDDNS 66 (123)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~~L~~~~~~~~ 66 (123)
+|.+++.....+.....+... .|+++.+.+..+..... ........++|||+|||+++|++.
T Consensus 45 kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 45 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred CceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 344444444444333344333 44555555544332211 112233456799999999998764
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.29 E-value=0.91 Score=34.38 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=42.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG 114 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~ 114 (123)
..++++ +|..+...+|.+.|+.||.+. +.-+-+ ..|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 446666 888889999999999999643 333222 2699999999999999998853
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.44 E-value=41 Score=21.72 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=29.9
Q ss_pred CHHHHHHHh--hcCCCeEEEEEeecCCCCCceeEEEEEeCC-HHHHHHHHH
Q 043937 63 DDNSLREAF--AKYGYVNEARIILDRETGRSRGFGFVTFST-VEEASSAIQ 110 (123)
Q Consensus 63 ~~~~l~~~f--~~~g~i~~~~~~~~~~~g~~kg~afv~f~~-~~~a~~a~~ 110 (123)
..+.|++.| ..|.++....+ .++ .-+.|+++|.|.+ -.-...|++
T Consensus 34 s~~~l~~~~~~~~F~p~kv~~l-~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 34 SGSKLRDEYILRGFNPTRVRPL-WNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CSHHHHHHHHHTTCCCSEEEEE-ECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCceeEec-ccC--CCCceeEEEEecCChHHHHHHHH
Confidence 447889977 89988765444 443 2368999999984 444444543
No 224
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=30.19 E-value=58 Score=22.25 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=23.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARI 82 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~ 82 (123)
..+.|+|||+.++..-|..++.. ..+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999988888876 55544433
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=29.58 E-value=67 Score=16.96 Aligned_cols=53 Identities=8% Similarity=0.111 Sum_probs=32.9
Q ss_pred CCCHHHHHHHhhcCC-----CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCCceeCCccc
Q 043937 61 NMDDNSLREAFAKYG-----YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDGQVTFNASC 122 (123)
Q Consensus 61 ~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~~~~~g~~~ 122 (123)
.+...+|..++..-+ +|-.+.+.- .|.||+-.. ..+..++..|++..+.|+++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceE
Confidence 366677777777544 344455532 278998876 45677888899999988876
No 226
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=26.61 E-value=48 Score=18.70 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=24.7
Q ss_pred CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 043937 76 YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG 114 (123)
Q Consensus 76 ~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~ 114 (123)
++.++.++.. ..||-||++...++...+++...+
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 3556655432 578999999999888888876554
No 227
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.97 E-value=11 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHhhcCCCeEEEEEeecCCCCCceeEEEEEeC
Q 043937 66 SLREAFAKYGYVNEARIILDRETGRSRGFGFVTFS 100 (123)
Q Consensus 66 ~l~~~f~~~g~i~~~~~~~~~~~g~~kg~afv~f~ 100 (123)
++.++|...|.|..... .+||+||.-.
T Consensus 3 ~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred cccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 44455555565554432 2679998864
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.82 E-value=38 Score=23.24 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=23.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCeEEEEE
Q 043937 51 SKLFVGGISYNMDDNSLREAFAKYGYVNEARI 82 (123)
Q Consensus 51 ~~l~v~~L~~~~~~~~l~~~f~~~g~i~~~~~ 82 (123)
....|+|||+.++..-|..++.....+....+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 45789999999999988888875444444433
No 229
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=23.03 E-value=76 Score=21.30 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=17.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 043937 52 KLFVGGISYNMDDNSLREAFAK 73 (123)
Q Consensus 52 ~l~v~~L~~~~~~~~l~~~f~~ 73 (123)
.+.|+|||+.++...+..++..
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~ 113 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSY 113 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTT
T ss_pred eEEEECCCCCccHHHHHHHHhc
Confidence 4789999999988877776654
No 230
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=22.51 E-value=51 Score=19.32 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=25.0
Q ss_pred CeEEEEEeecCCCCCceeEEEEEeCCHHHHHHHHHHhCC
Q 043937 76 YVNEARIILDRETGRSRGFGFVTFSTVEEASSAIQALDG 114 (123)
Q Consensus 76 ~i~~~~~~~~~~~g~~kg~afv~f~~~~~a~~a~~~l~~ 114 (123)
.|.++-.+ + ..+||-|||=.+..++..|+..+.+
T Consensus 40 ~I~Si~~~-~----~lkGyIyVEA~~~~~V~~ai~gi~~ 73 (106)
T 3h7h_B 40 QIKSVVAP-E----HVKGYIYVEAYKQTHVKQAIEGVGN 73 (106)
T ss_dssp CCCEEEEC-T----TCCSEEEEEESSHHHHHHHHTTCGG
T ss_pred ceEEEEec-C----CCceEEEEEeCCHHHHHHHHhcccc
Confidence 45666432 2 2489999999999999999876544
Done!