Query 043938
Match_columns 133
No_of_seqs 149 out of 1039
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.8 7.4E-20 1.6E-24 149.8 12.8 115 13-128 8-123 (358)
2 PRK11272 putative DMT superfam 99.4 2.9E-12 6.2E-17 101.5 12.8 104 20-127 10-114 (292)
3 TIGR00688 rarD rarD protein. T 99.4 5E-12 1.1E-16 97.9 11.7 108 18-128 2-115 (256)
4 PRK10532 threonine and homoser 99.3 2E-11 4.2E-16 96.8 12.4 107 14-126 8-114 (293)
5 PRK11689 aromatic amino acid e 99.3 1.4E-11 3E-16 97.8 11.2 104 16-127 2-109 (295)
6 PRK15430 putative chlorampheni 99.3 1.7E-11 3.6E-16 97.4 10.8 109 15-126 5-116 (296)
7 TIGR00950 2A78 Carboxylate/Ami 99.2 9.7E-11 2.1E-15 90.1 9.7 91 30-127 1-91 (260)
8 PF00892 EamA: EamA-like trans 99.2 6.5E-11 1.4E-15 80.7 6.4 99 28-128 1-99 (126)
9 PRK11453 O-acetylserine/cystei 99.2 4.4E-10 9.6E-15 89.2 11.7 100 20-129 6-106 (299)
10 TIGR00817 tpt Tpt phosphate/ph 98.9 5.4E-08 1.2E-12 77.1 12.8 97 31-129 15-111 (302)
11 TIGR00950 2A78 Carboxylate/Ami 98.8 1E-07 2.3E-12 73.2 12.7 111 15-128 125-237 (260)
12 PTZ00343 triose or hexose phos 98.7 3.5E-07 7.7E-12 74.6 12.8 96 31-129 62-160 (350)
13 COG0697 RhaT Permeases of the 98.5 2.8E-06 6.1E-11 65.2 12.6 111 16-128 5-115 (292)
14 TIGR03340 phn_DUF6 phosphonate 98.5 2.1E-06 4.6E-11 67.5 10.9 104 20-127 3-107 (281)
15 PRK10532 threonine and homoser 98.2 3.7E-05 8E-10 61.0 12.8 106 17-126 147-252 (293)
16 PRK11272 putative DMT superfam 98.1 0.00011 2.4E-09 58.1 12.4 108 17-126 149-256 (292)
17 TIGR00817 tpt Tpt phosphate/ph 98.0 6.3E-05 1.4E-09 59.6 10.6 112 17-128 144-266 (302)
18 COG2510 Predicted membrane pro 98.0 2.5E-05 5.4E-10 56.0 7.3 101 21-123 6-107 (140)
19 PRK11689 aromatic amino acid e 97.8 0.00044 9.5E-09 54.8 11.9 104 17-126 155-258 (295)
20 PF13536 EmrE: Multidrug resis 97.8 6.4E-05 1.4E-09 51.7 5.6 73 52-125 2-76 (113)
21 PF03151 TPT: Triose-phosphate 97.7 0.0021 4.6E-08 45.5 12.1 104 20-124 2-122 (153)
22 PRK11453 O-acetylserine/cystei 97.6 0.003 6.5E-08 50.1 13.3 109 17-125 142-257 (299)
23 PTZ00343 triose or hexose phos 97.6 0.0033 7.1E-08 51.4 13.4 111 17-127 193-320 (350)
24 PLN00411 nodulin MtN21 family 97.5 0.0027 5.8E-08 52.4 12.6 106 19-126 190-299 (358)
25 TIGR00776 RhaT RhaT L-rhamnose 97.3 0.0016 3.4E-08 51.8 8.9 94 19-122 2-99 (290)
26 COG0697 RhaT Permeases of the 97.0 0.026 5.6E-07 43.1 12.5 107 17-128 153-260 (292)
27 TIGR00688 rarD rarD protein. T 96.9 0.028 6E-07 43.3 11.4 96 22-125 150-250 (256)
28 PF06027 DUF914: Eukaryotic pr 96.7 0.031 6.7E-07 45.9 11.0 100 28-128 23-124 (334)
29 TIGR03340 phn_DUF6 phosphonate 96.5 0.0052 1.1E-07 48.2 5.3 110 17-128 143-256 (281)
30 COG5006 rhtA Threonine/homoser 96.4 0.051 1.1E-06 43.4 10.2 99 19-123 13-111 (292)
31 TIGR00776 RhaT RhaT L-rhamnose 95.9 0.11 2.4E-06 41.2 9.7 99 17-124 151-253 (290)
32 PRK15430 putative chlorampheni 95.8 0.24 5.1E-06 39.2 11.3 103 21-125 152-255 (296)
33 PF06027 DUF914: Eukaryotic pr 95.0 0.39 8.4E-06 39.5 10.3 97 15-112 165-262 (334)
34 COG2962 RarD Predicted permeas 94.7 0.38 8.2E-06 38.9 9.4 105 16-123 5-112 (293)
35 PF08449 UAA: UAA transporter 93.0 2.3 4.9E-05 33.8 10.9 104 19-123 155-265 (303)
36 KOG1441 Glucose-6-phosphate/ph 92.0 2.9 6.3E-05 34.2 10.4 100 16-117 161-269 (316)
37 KOG4510 Permease of the drug/m 90.5 0.032 6.9E-07 45.0 -2.2 92 28-125 47-139 (346)
38 COG5006 rhtA Threonine/homoser 82.9 18 0.00039 29.1 9.4 105 17-124 147-251 (292)
39 KOG3912 Predicted integral mem 80.8 7.7 0.00017 31.8 6.7 81 31-112 16-115 (372)
40 KOG2765 Predicted membrane pro 76.7 21 0.00045 30.2 8.3 98 17-114 246-349 (416)
41 PF04142 Nuc_sug_transp: Nucle 73.7 40 0.00088 26.2 9.6 79 14-98 11-89 (244)
42 KOG1441 Glucose-6-phosphate/ph 66.7 25 0.00055 28.7 6.6 97 31-128 30-128 (316)
43 COG5070 VRG4 Nucleotide-sugar 59.5 50 0.0011 26.4 6.7 110 18-129 155-272 (309)
44 PF04657 DUF606: Protein of un 58.2 64 0.0014 22.9 10.2 69 46-116 29-97 (138)
45 KOG4510 Permease of the drug/m 58.1 4.9 0.00011 32.7 1.0 96 17-119 190-289 (346)
46 KOG1444 Nucleotide-sugar trans 57.0 71 0.0015 26.3 7.4 92 16-110 155-255 (314)
47 PRK13499 rhamnose-proton sympo 51.9 1.4E+02 0.003 24.8 8.5 110 12-122 1-120 (345)
48 PF11694 DUF3290: Protein of u 51.9 91 0.002 22.7 8.9 33 76-108 43-75 (149)
49 KOG1442 GDP-fucose transporter 51.6 46 0.001 27.3 5.5 93 17-110 184-282 (347)
50 PRK02971 4-amino-4-deoxy-L-ara 46.1 1E+02 0.0022 21.6 9.2 87 18-123 2-88 (129)
51 PF06570 DUF1129: Protein of u 39.5 60 0.0013 24.4 4.3 13 19-31 112-124 (206)
52 PRK15051 4-amino-4-deoxy-L-ara 37.1 1.3E+02 0.0029 20.3 7.1 41 87-127 41-81 (111)
53 PF07857 DUF1632: CEO family ( 34.8 1.6E+02 0.0034 23.4 6.1 30 15-44 180-209 (254)
54 KOG2516 Protein involved in do 33.9 33 0.00071 29.6 2.2 56 33-90 237-296 (517)
55 PF05106 Phage_holin_3: Phage 32.7 1.5E+02 0.0032 20.0 5.0 36 79-114 44-79 (100)
56 PF04142 Nuc_sug_transp: Nucle 28.3 1.7E+02 0.0037 22.7 5.3 50 78-128 13-62 (244)
57 KOG2234 Predicted UDP-galactos 27.4 3.7E+02 0.0079 22.5 10.8 101 18-119 15-128 (345)
58 TIGR01594 holin_lambda phage h 26.9 2.1E+02 0.0046 19.6 7.2 37 79-115 46-82 (107)
59 PF05817 Ribophorin_II: Oligos 20.1 6.5E+02 0.014 22.7 8.1 25 83-107 584-608 (636)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.83 E-value=7.4e-20 Score=149.75 Aligned_cols=115 Identities=20% Similarity=0.202 Sum_probs=103.9
Q ss_pred hhcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCccchHHHHHHHHHHHH
Q 043938 13 KLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERN-NRPKLTSMVLVQAFSLWLI 91 (133)
Q Consensus 13 ~~~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~-~~~~l~~~~~~~l~llgl~ 91 (133)
..++.++|+.|+.+|+.++|..++.|.++++|++|+.++++|+.+|+++++|+++.++|+ ++|+.+++++.+++++|++
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL 87 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 556789999999999999999999999999999999999999999999999998876653 3455567899999999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 92 WWFLGSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
| +.++.+++.|++||||+++|++.++.|++++=+..
T Consensus 88 g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~ 123 (358)
T PLN00411 88 G-SMYVITGYIGIEYSNPTLASAISNITPALTFILAI 123 (358)
T ss_pred H-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 9 68889999999999999999999999999987654
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.43 E-value=2.9e-12 Score=101.47 Aligned_cols=104 Identities=10% Similarity=0.120 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 043938 20 VMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKF 99 (133)
Q Consensus 20 ~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l 99 (133)
.+.++.+.++||.++++.|.+.+ ++||..++++|+.+|+++++++...+ |++.+ +++++.+...+|.++...++.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~~~~~--~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-GHPLP--TLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-CCCCC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999876 69999999999999999998876543 32222 4678888899999988788999
Q ss_pred HHHHh-hhchHHHHHHHhhhhhhhhcccc
Q 043938 100 ISEEH-SLNICNICRALPNLILNSNSSIN 127 (133)
Q Consensus 100 ~~~gL-~~Tsa~nas~i~~l~P~~~~~~~ 127 (133)
++.|. +++++++++++..+.|+++.-+.
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla 114 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFS 114 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999987443
No 3
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.39 E-value=5e-12 Score=97.94 Aligned_cols=108 Identities=9% Similarity=0.003 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-----cCCccchHH-HHHHHHHHHH
Q 043938 18 KPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERN-----NRPKLTSMV-LVQAFSLWLI 91 (133)
Q Consensus 18 ~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~-----~~~~l~~~~-~~~l~llgl~ 91 (133)
|++..++++.++||.+.+++|. .+ ++||.+++++|.++|++++.++...++|+ +.++.++++ +..+.+.|.+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5778899999999999999997 44 49999999999999999888765433221 111112222 3345555555
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 92 WWFLGSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
...++.+++.|++++++++++++..+.|+++.=+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~ 115 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGR 115 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999876544
No 4
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.34 E-value=2e-11 Score=96.85 Aligned_cols=107 Identities=11% Similarity=-0.063 Sum_probs=89.7
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH
Q 043938 14 LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWW 93 (133)
Q Consensus 14 ~~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv 93 (133)
..+.+++..++++.+.|+++.+++|.+.++ +||..++++|+++|+++++++... ++. +.+++++...+..|++.
T Consensus 8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~~~- 81 (293)
T PRK10532 8 LPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGVSL- 81 (293)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHHHH-
Confidence 345788999999999999999999999876 999999999999999998876422 221 23567888888888875
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938 94 FLGSKFISEEHSLNICNICRALPNLILNSNSSI 126 (133)
Q Consensus 94 ~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~ 126 (133)
...+.++|.|++|++++.++++..+.|+++.-.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll 114 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALF 114 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999998643
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.34 E-value=1.4e-11 Score=97.82 Aligned_cols=104 Identities=9% Similarity=-0.057 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 043938 16 GLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFL 95 (133)
Q Consensus 16 ~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~ 95 (133)
+.+.++.++.+.++||+++++.|.++++ +||+.+.++|+.+|++++.++. . + |+.++ +.++..+.|.++...
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~--~-~---~~~~~-~~~~~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV--G-F---PRLRQ-FPKRYLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc--c-c---ccccc-ccHHHHHHHhHHHHH
Confidence 4567888999999999999999998865 9999999999999999988763 1 1 12222 223345667778889
Q ss_pred HHHHHHHHhhh----chHHHHHHHhhhhhhhhcccc
Q 043938 96 GSKFISEEHSL----NICNICRALPNLILNSNSSIN 127 (133)
Q Consensus 96 ~q~l~~~gL~~----Tsa~nas~i~~l~P~~~~~~~ 127 (133)
++.+++.|++| +++++++++..+.|+++.=+-
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~ 109 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFA 109 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHH
Confidence 99999998865 578899999999999886543
No 6
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.32 E-value=1.7e-11 Score=97.36 Aligned_cols=109 Identities=8% Similarity=-0.100 Sum_probs=85.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccC--Ccc-chHHHHHHHHHHHH
Q 043938 15 QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNR--PKL-TSMVLVQAFSLWLI 91 (133)
Q Consensus 15 ~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~--~~l-~~~~~~~l~llgl~ 91 (133)
++.++++.++++.++||.+.+.+|.. + ++||..+.++|.+++++++.++.+.++++.. ++. +++++. ....+.+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 81 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAV 81 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHH
Confidence 44678999999999999999999975 4 5999999999999999988887654321110 001 233332 3447778
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938 92 WWFLGSKFISEEHSLNICNICRALPNLILNSNSSI 126 (133)
Q Consensus 92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~ 126 (133)
+...++.++|+|++++++++++++..+.|+++.=.
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~ 116 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVL 116 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999998644
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.22 E-value=9.7e-11 Score=90.10 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 043938 30 YAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNIC 109 (133)
Q Consensus 30 wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa 109 (133)
||.+++.+|.+++++.||....++|.+.+.+++.|+... | + +++++.+....|.++..+++.++|.|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~---~--~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R---P--PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c---c--CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999999888999999999999999988876432 1 2 34577788999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhcccc
Q 043938 110 NICRALPNLILNSNSSIN 127 (133)
Q Consensus 110 ~nas~i~~l~P~~~~~~~ 127 (133)
++++++.++.|+++.-+-
T Consensus 74 ~~~~ii~~~~P~~~~~~~ 91 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLS 91 (260)
T ss_pred hhhHHHHhhhHHHHHHHH
Confidence 999999999999987543
No 8
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.18 E-value=6.5e-11 Score=80.65 Aligned_cols=99 Identities=16% Similarity=0.099 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043938 28 TSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLN 107 (133)
Q Consensus 28 ~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~T 107 (133)
++||...+..|...++ +||....++|...+.+ ++++....++++.+..+.+++......|.++....+.+++.|++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4699999999999876 9999999999999998 6776666665543456778888899999998778999999999999
Q ss_pred hHHHHHHHhhhhhhhhccccc
Q 043938 108 ICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 108 sa~nas~i~~l~P~~~~~~~~ 128 (133)
+++.++.+.++.|+++.-.-+
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~ 99 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGW 99 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876544
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.17 E-value=4.4e-10 Score=89.24 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 043938 20 VMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKF 99 (133)
Q Consensus 20 ~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l 99 (133)
.+..+++.++||.+++++|.++++ +||..++++|+.+|++++.++.. +++ .+ +..++..|+.+...+..+
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~~---~~~---~~---~~~~~~~g~~~~~~~~~~ 75 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFVA---RPK---VP---LNLLLGYGLTISFGQFAF 75 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHhc---CCC---Cc---hHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999865 99999999999999887766531 211 11 223555567666677778
Q ss_pred HHHHhhhc-hHHHHHHHhhhhhhhhcccccc
Q 043938 100 ISEEHSLN-ICNICRALPNLILNSNSSINYF 129 (133)
Q Consensus 100 ~~~gL~~T-sa~nas~i~~l~P~~~~~~~~~ 129 (133)
+|.+++|+ ++++++++.++.|+++.=+.++
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~ 106 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAF 106 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHH
Confidence 89999985 7899999999999998755443
No 10
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.88 E-value=5.4e-08 Score=77.13 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 043938 31 AGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICN 110 (133)
Q Consensus 31 gg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~ 110 (133)
.+..+.-|.++++--+|..+++.|+.++++.+.+. +....+++++.+++|+.+++.+|+++ ..++.+.+.|++|||++
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHH
Confidence 44556789999865789999999999998876654 21122223456788999999999998 57889999999999999
Q ss_pred HHHHHhhhhhhhhcccccc
Q 043938 111 ICRALPNLILNSNSSINYF 129 (133)
Q Consensus 111 nas~i~~l~P~~~~~~~~~ 129 (133)
+++++.++.|+++.-+.++
T Consensus 93 ~~~li~~~~Pv~~~ll~~~ 111 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAF 111 (302)
T ss_pred HHHHHHhcchHHHHHHHHH
Confidence 9999999999998766543
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.83 E-value=1e-07 Score=73.19 Aligned_cols=111 Identities=18% Similarity=0.081 Sum_probs=91.3
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHH
Q 043938 15 QGLKPVMVMVIVQTSYAGMNILNKLAADDGMN--LAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIW 92 (133)
Q Consensus 15 ~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~--P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~G 92 (133)
...+++...+++.++|+...+..|...++ .+ +..+..+|..++.+++.|+.+..+++. ..+.+++..+..+|.++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPNP--QALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHHHHH
Confidence 34578889999999999999999998754 56 455666789999999999877654332 23567888888899998
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 93 WFLGSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 93 v~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
....+.+++.++++++++.++.+..+.|+++.-..+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~ 237 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGL 237 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999876654
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.71 E-value=3.5e-07 Score=74.62 Aligned_cols=96 Identities=13% Similarity=0.030 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhhhhccCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043938 31 AGMNILNKLAADDGMN-LAVLVAYRLLSAAAFVLPLAFFFERNNRPKL--TSMVLVQAFSLWLIWWFLGSKFISEEHSLN 107 (133)
Q Consensus 31 gg~~i~~K~al~~g~~-P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l--~~~~~~~l~llgl~Gv~~~q~l~~~gL~~T 107 (133)
....+..|.++++ +| |..++.+|+++++++...+. ....+++|+. .++++..++.+|++|...+. ..+.|++++
T Consensus 62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~-~~~~sl~~~ 138 (350)
T PTZ00343 62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYW-ATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHF-GAVISMGLG 138 (350)
T ss_pred HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHH-HhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Confidence 3456778999876 99 99999999999987654442 2212223444 24578899999999987654 467999999
Q ss_pred hHHHHHHHhhhhhhhhcccccc
Q 043938 108 ICNICRALPNLILNSNSSINYF 129 (133)
Q Consensus 108 sa~nas~i~~l~P~~~~~~~~~ 129 (133)
++++++++-++.|++|.-+.++
T Consensus 139 svs~~~iika~~Pvft~lls~~ 160 (350)
T PTZ00343 139 AVSFTHVVKAAEPVFTALLSIL 160 (350)
T ss_pred cHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999877654
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.53 E-value=2.8e-06 Score=65.16 Aligned_cols=111 Identities=18% Similarity=0.119 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 043938 16 GLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFL 95 (133)
Q Consensus 16 ~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~ 95 (133)
.......++...+.|+.+....|...++..++....+.|+..+.+++.+.......+.++ ..+++.+..+.+.++...
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRP--ALRPWLLLLLLALLGLAL 82 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccc--cccchHHHHHHHHHHHHH
Confidence 345566777788999999999998876447777777889999998855443221111111 222355678888888889
Q ss_pred HHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 96 GSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 96 ~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
++.+++.+++++++..++++..+.|.++.-...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 83 PFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987763
No 14
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.48 E-value=2.1e-06 Score=67.50 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhh-hccCCccchHHHHHHHHHHHHHHHHHHH
Q 043938 20 VMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFE-RNNRPKLTSMVLVQAFSLWLIWWFLGSK 98 (133)
Q Consensus 20 ~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~-r~~~~~l~~~~~~~l~llgl~Gv~~~q~ 98 (133)
....+.+.++|+...+..|...++ -++. .+++...+++++.|+...+. ++.+++.+ ++++...+.+.++...++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLP-ATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcc-hhhHHHHHHHHHHHHHHHH
Confidence 356678899999999999965554 3443 58888888888888876542 22333333 3455566667777789999
Q ss_pred HHHHHhhhchHHHHHHHhhhhhhhhcccc
Q 043938 99 FISEEHSLNICNICRALPNLILNSNSSIN 127 (133)
Q Consensus 99 l~~~gL~~Tsa~nas~i~~l~P~~~~~~~ 127 (133)
+++.|++++++++++.+..+.|+++.=+-
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~ 107 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWA 107 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHH
Confidence 99999999999999999999999885443
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.24 E-value=3.7e-05 Score=60.95 Aligned_cols=106 Identities=10% Similarity=-0.030 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG 96 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~ 96 (133)
..+.+..+++.++|+...+..|...+ +.+|....... .++++++.|+....+. .+..+...+..++.+|+++..+.
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIGS-LIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP 222 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHH-HHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999998865 48888775554 5566777777665432 11223445555678889888888
Q ss_pred HHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938 97 SKFISEEHSLNICNICRALPNLILNSNSSI 126 (133)
Q Consensus 97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~ 126 (133)
..+++.|+++.+|+.+|.+..+.|+++.-.
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~ 252 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVS 252 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHH
Confidence 889999999999999999999999987543
No 16
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.07 E-value=0.00011 Score=58.09 Aligned_cols=108 Identities=8% Similarity=-0.115 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG 96 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~ 96 (133)
..+.+..+++.++|+...+..|..- . -++.....+...++++++.++....+.......+.++|..+..+|+.|...-
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 4578888899999999999999763 2 2355667888889988888877654322111124467888889999988788
Q ss_pred HHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938 97 SKFISEEHSLNICNICRALPNLILNSNSSI 126 (133)
Q Consensus 97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~ 126 (133)
..+++.++++.++++++.+..+.|+++.-.
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~ 256 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLL 256 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999988643
No 17
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.05 E-value=6.3e-05 Score=59.59 Aligned_cols=112 Identities=11% Similarity=0.016 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCc---------cchH-HHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADD-GMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPK---------LTSM-VLVQA 85 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~-g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~---------l~~~-~~~~l 85 (133)
..+.+..+++.+.|+...+..|...++ +.||..+..+-...+++.+.|+++..|...... .... .+...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 457788899999999999999987652 599999999999999999999887654211000 0000 11112
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 86 FSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 86 ~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
+..+......++.+.|.++++++|+.+++..++-|+.+.-..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~ 266 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSI 266 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeeh
Confidence 2333323334556788899999999999999999999865544
No 18
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.04 E-value=2.5e-05 Score=56.01 Aligned_cols=101 Identities=9% Similarity=-0.017 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC-ccchHHHHHHHHHHHHHHHHHHHH
Q 043938 21 MVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRP-KLTSMVLVQAFSLWLIWWFLGSKF 99 (133)
Q Consensus 21 l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~-~l~~~~~~~l~llgl~Gv~~~q~l 99 (133)
...+++.++||...+++|+.++ |+||..-++.|..+...++..+.+...+.+.+ .+..|.|.-+.+.|+.|. ..-.+
T Consensus 6 ~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~g-lswl~ 83 (140)
T COG2510 6 IYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGG-LSWLL 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHH-HHHHH
Confidence 4556788999999999999985 69999999999999999888877766554332 356788888889898886 56668
Q ss_pred HHHHhhhchHHHHHHHhhhhhhhh
Q 043938 100 ISEEHSLNICNICRALPNLILNSN 123 (133)
Q Consensus 100 ~~~gL~~Tsa~nas~i~~l~P~~~ 123 (133)
||.++|-..++...-+--+.|+++
T Consensus 84 Yf~ALk~G~as~VvPldk~svvl~ 107 (140)
T COG2510 84 YFRALKKGKASRVVPLDKTSVVLA 107 (140)
T ss_pred HHHHHhcCCcceEEEcccccHHHH
Confidence 999999988887777777777665
No 19
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.84 E-value=0.00044 Score=54.84 Aligned_cols=104 Identities=9% Similarity=-0.076 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG 96 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~ 96 (133)
..+.+.++.+.++|+...+..|... ++.+|..... ..+.+++.+.....+ ......+.+.+..+...|+ +....
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~-~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~t~~~ 228 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYA-RGKNGITLFF---ILTALALWIKYFLSP-QPAMVFSLPAIIKLLLAAA-AMGFG 228 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHHH---HHHHHHHHHHHHHhc-CccccCCHHHHHHHHHHHH-HHHHH
Confidence 4578899999999999999999864 4588876532 334444444333322 1112245566777777675 44567
Q ss_pred HHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938 97 SKFISEEHSLNICNICRALPNLILNSNSSI 126 (133)
Q Consensus 97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~ 126 (133)
+.+++.++++.+|+.+|.+..+.|++..-.
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~ 258 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAAL 258 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHH
Confidence 889999999999999999999999986543
No 20
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.78 E-value=6.4e-05 Score=51.72 Aligned_cols=73 Identities=15% Similarity=0.039 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhc-c-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938 52 AYRLLSAAAFVLPLAFFFERN-N-RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSS 125 (133)
Q Consensus 52 ~~R~~iA~liL~p~a~~~~r~-~-~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~ 125 (133)
.+|...+.+++..+...+.|. + .+..+.+++.++...|++|...+..+++.|++++++ ..+++.++.|+++.-
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~l 76 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTAL 76 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHH
Confidence 689999999988877664331 1 122344667777888999887889999999999995 888999999999864
No 21
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.66 E-value=0.0021 Score=45.46 Aligned_cols=104 Identities=17% Similarity=0.046 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccC-C---cc-------chHHH
Q 043938 20 VMVMVIVQTSYAGMNILNKLAADD------GMNLAVLVAYRLLSAAAFVLPLAFFFERNNR-P---KL-------TSMVL 82 (133)
Q Consensus 20 ~l~lil~~~~wgg~~i~~K~al~~------g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~-~---~l-------~~~~~ 82 (133)
++..+.+.++.+...+..|..+++ +.+|..+..+-...+++++.|.++..|+.+. + .. ..+.+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence 456778889999999999998876 8999999999999999999999888776431 1 01 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhc
Q 043938 83 VQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNS 124 (133)
Q Consensus 83 ~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~ 124 (133)
..++..|+++. .+|...|.-+++|||...++..++=.+.+.
T Consensus 82 ~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i 122 (153)
T PF03151_consen 82 FLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVI 122 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHH
Confidence 55666677775 889999999999999999999887655543
No 22
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.59 E-value=0.003 Score=50.11 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHhhhhhcc-----CCccchHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNL--AVLVAYRLLSAAAFVLPLAFFFERNN-----RPKLTSMVLVQAFSLW 89 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P--~~l~~~R~~iA~liL~p~a~~~~r~~-----~~~l~~~~~~~l~llg 89 (133)
..+.+..+++.++|+...+..|...++.-+| ..+..+-.+++.+.+.+.++..+... ....+.+.+..++.+|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 3577888999999999999999865432222 33334334444443333333333211 1234557788899999
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938 90 LIWWFLGSKFISEEHSLNICNICRALPNLILNSNSS 125 (133)
Q Consensus 90 l~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~ 125 (133)
+++...-..+++.++++..|+.++.+..+.|++..-
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~ 257 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLA 257 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 998888888999999999999999999999997653
No 23
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.55 E-value=0.0033 Score=51.36 Aligned_cols=111 Identities=13% Similarity=0.089 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC-----------ccch
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADD------GMNLAVLVAYRLLSAAAFVLPLAFFFERNNRP-----------KLTS 79 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~------g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~-----------~l~~ 79 (133)
+.+.+..+++.++|+...+.+|..+++ ..++..+..+-..+++++++|+....|..... ....
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 457888899999999999999998763 26677777777889999999987755421100 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhcccc
Q 043938 80 MVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSIN 127 (133)
Q Consensus 80 ~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~ 127 (133)
.......+.+.+...+++.+.|.++++++|..+++..++-|+.+.-.-
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s 320 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSS 320 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhh
Confidence 111222333333445667778889999999999999999999876543
No 24
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.54 E-value=0.0027 Score=52.35 Aligned_cols=106 Identities=9% Similarity=-0.056 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC----ccchHHHHHHHHHHHHHHH
Q 043938 19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRP----KLTSMVLVQAFSLWLIWWF 94 (133)
Q Consensus 19 ~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~----~l~~~~~~~l~llgl~Gv~ 94 (133)
+.+.++++.+.|+...+..|....+.-++...+++-..++++.+.+.+...++...+ ..... ...++..|+. ..
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~ 267 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TS 267 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HH
Confidence 557788899999999999998766533445667777777777666666555542111 11222 2224444543 34
Q ss_pred HHHHHHHHHhhhchHHHHHHHhhhhhhhhccc
Q 043938 95 LGSKFISEEHSLNICNICRALPNLILNSNSSI 126 (133)
Q Consensus 95 ~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~ 126 (133)
+...+.++++++..|+.+|...++.|+++.-.
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~ll 299 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVM 299 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHH
Confidence 56668889999999999999999999998644
No 25
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.35 E-value=0.0016 Score=51.85 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHH---HHH
Q 043938 19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIW---WFL 95 (133)
Q Consensus 19 ~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~G---v~~ 95 (133)
.++..+++.++||.+.+..|..- |.++.++. |..++.+++..+.... |+ |+. +....+..|++| ...
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~-~~--~~~---~~~~~~~~g~l~G~~w~i 71 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF-VL--PEF---WALSIFLVGLLSGAFWAL 71 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH-hC--Ccc---cccHHHHHHHHHHHHHHh
Confidence 35677888999999999999763 79998875 8888888776655443 21 221 223445555555 667
Q ss_pred HHHHHHHHhhhchHHHHHHHhh-hhhhh
Q 043938 96 GSKFISEEHSLNICNICRALPN-LILNS 122 (133)
Q Consensus 96 ~q~l~~~gL~~Tsa~nas~i~~-l~P~~ 122 (133)
.|.+++.+.++++.+.+-.+.+ +.|++
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~ 99 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVG 99 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 8899999999999999977777 55543
No 26
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.04 E-value=0.026 Score=43.06 Aligned_cols=107 Identities=15% Similarity=0.037 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVA-YRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFL 95 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~-~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~ 95 (133)
..+....+++.+.|+...+..|... ..++..... +....+.....+. ..+... .+...+++..+...|+.+...
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLF--FLSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHH--Hhcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999998765 367777776 3333222222232 222111 234567888899999998877
Q ss_pred HHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 96 GSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 96 ~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
-+.+++.+++..+++..+.+..+.|++.....+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 260 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGV 260 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999988776443
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=96.86 E-value=0.028 Score=43.34 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh--hhhccC--Cc-cchHHHHHHHHHHHHHHHHH
Q 043938 22 VMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFF--FERNNR--PK-LTSMVLVQAFSLWLIWWFLG 96 (133)
Q Consensus 22 ~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~--~~r~~~--~~-l~~~~~~~l~llgl~Gv~~~ 96 (133)
..+++.++|+...+..|..-++ ++.... .+...+.|+... ...... +. ...++|..++.+|+.+. ..
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~-i~ 221 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT--DLAGFC-----LETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITG-TP 221 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CcchHH-----HHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHH-HH
Confidence 4567889999999999976432 222222 122222333211 011111 11 12248888999998854 68
Q ss_pred HHHHHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938 97 SKFISEEHSLNICNICRALPNLILNSNSS 125 (133)
Q Consensus 97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~~ 125 (133)
+.++..|+++.+|+.++.+..+.|+++.=
T Consensus 222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~ 250 (256)
T TIGR00688 222 LLAFVIAANRLPLNLLGLLQYIGPTIMML 250 (256)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998753
No 28
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.71 E-value=0.031 Score=45.90 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhhhh-ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043938 28 TSYAGMNILNKLAADDGMN-LAVLVAYRLLSAAAFVLPLAFFFER-NNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHS 105 (133)
Q Consensus 28 ~~wgg~~i~~K~al~~g~~-P~~l~~~R~~iA~liL~p~a~~~~r-~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~ 105 (133)
++=.++.+.+....++|.+ |..-.+.-...-.++..|....+++ +++.+..+++|++.+++|++-+ .-+++...|++
T Consensus 23 l~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv-~aN~~~v~a~~ 101 (334)
T PF06027_consen 23 LCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV-EANYLVVLAYQ 101 (334)
T ss_pred HHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH-HHHHHHHHHhh
Confidence 4455666666666566777 7766666666656666665444332 2333344578999999999997 56678999999
Q ss_pred hchHHHHHHHhhhhhhhhccccc
Q 043938 106 LNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 106 ~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
|||.+.+.++..++-.++.-..+
T Consensus 102 yTsvtS~~lL~~~~i~~~~~LS~ 124 (334)
T PF06027_consen 102 YTSVTSVQLLDCTSIPFVMILSF 124 (334)
T ss_pred cccHhHHHhhhhhhhHHHHHHHH
Confidence 99999999998777666654443
No 29
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.53 E-value=0.0052 Score=48.24 Aligned_cols=110 Identities=12% Similarity=-0.090 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAV----LVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIW 92 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~----l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~G 92 (133)
.++....+++.++|+...+..|...+ +.+|.. ...+...+.++.+.+.....+++ .+......+..+...+.++
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 220 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGLM 220 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHH
Confidence 34566778889999999999997643 355532 22223322212222222111211 1111122334455666666
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 93 WFLGSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 93 v~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
....+.+++.++++.+|+.++....+.|++..-.-+
T Consensus 221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~ 256 (281)
T TIGR03340 221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGI 256 (281)
T ss_pred HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHH
Confidence 667788999999999999999999999998765554
No 30
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.43 E-value=0.051 Score=43.38 Aligned_cols=99 Identities=14% Similarity=-0.010 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHH
Q 043938 19 PVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSK 98 (133)
Q Consensus 19 ~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~ 98 (133)
|++.+..+.+.--+..-++|..... +.|--.+.+|..++++++.++. +.+++ +.+++++..+...|..=. ..|.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr~--r~~~~~~~~~~~yGvsLg-~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWRR--RLSKPQRLALLAYGVSLG-GMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHHh--ccChhhhHHHHHHHHHHH-HHHH
Confidence 5666655544433445567777775 9999999999999999998863 33322 346778888888887632 5788
Q ss_pred HHHHHhhhchHHHHHHHhhhhhhhh
Q 043938 99 FISEEHSLNICNICRALPNLILNSN 123 (133)
Q Consensus 99 l~~~gL~~Tsa~nas~i~~l~P~~~ 123 (133)
+||.+++.-.=..+-++--+-|..-
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~v 111 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAV 111 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHH
Confidence 9999998887777777776666543
No 31
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.85 E-value=0.11 Score=41.25 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRL---LSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWW 93 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~---~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv 93 (133)
.++....+++.+.|+...+..|.. +.||...++.-. .+++.++.+.. ++.+|. ..+......+.|++-
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~- 221 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMW- 221 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHH-
Confidence 578888899999999999999964 388988844444 44444433321 122332 233444455577774
Q ss_pred HHHHHHHHHHhh-hchHHHHHHHhhhhhhhhc
Q 043938 94 FLGSKFISEEHS-LNICNICRALPNLILNSNS 124 (133)
Q Consensus 94 ~~~q~l~~~gL~-~Tsa~nas~i~~l~P~~~~ 124 (133)
..-+.+++.|++ +..++.++.+...-|+...
T Consensus 222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~ 253 (290)
T TIGR00776 222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIIST 253 (290)
T ss_pred HHHHHHHHHHcccccchhhHHHHHHHHHHHHH
Confidence 455667889999 9999999999999998765
No 32
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=95.76 E-value=0.24 Score=39.23 Aligned_cols=103 Identities=8% Similarity=-0.040 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHH
Q 043938 21 MVMVIVQTSYAGMNILNKLAADDG-MNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKF 99 (133)
Q Consensus 21 l~lil~~~~wgg~~i~~K~al~~g-~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l 99 (133)
...+++.++|+...+..|...++. .++.....+=..++.+.+.+...... ......+...+..++..|+.+. ..+.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~-i~~~~ 229 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSST-SHMGQNPMSLNLLLIAAGIVTT-VPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCc-ccccCCcHHHHHHHHHHHHHHH-HHHHH
Confidence 346677899999999999764321 22233333333333333322211000 0011111223344555565444 67889
Q ss_pred HHHHhhhchHHHHHHHhhhhhhhhcc
Q 043938 100 ISEEHSLNICNICRALPNLILNSNSS 125 (133)
Q Consensus 100 ~~~gL~~Tsa~nas~i~~l~P~~~~~ 125 (133)
++.++++.+|+.+|.+..+.|++..-
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~ 255 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFL 255 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
No 33
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=95.00 E-value=0.39 Score=39.50 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=65.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchH-HHHHHHHHHHHHH
Q 043938 15 QGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSM-VLVQAFSLWLIWW 93 (133)
Q Consensus 15 ~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~-~~~~l~llgl~Gv 93 (133)
+..++-++++++++++|..++.-|..+++ .|+..+...==+.++++..+.....||++....++. +...+++...+..
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l 243 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCL 243 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence 45678899999999999999999998875 788877766666777777777777788655434332 1122222222234
Q ss_pred HHHHHHHHHHhhhchHHHH
Q 043938 94 FLGSKFISEEHSLNICNIC 112 (133)
Q Consensus 94 ~~~q~l~~~gL~~Tsa~na 112 (133)
+.+..+.-..+++|||+..
T Consensus 244 f~~y~l~p~~l~~ssAt~~ 262 (334)
T PF06027_consen 244 FLFYSLVPIVLRMSSATFF 262 (334)
T ss_pred HHHHHHHHHHHHhCcccee
Confidence 4444555678899998743
No 34
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=94.72 E-value=0.38 Score=38.89 Aligned_cols=105 Identities=13% Similarity=0.039 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc-cCCcc--chHHHHHHHHHHHHH
Q 043938 16 GLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERN-NRPKL--TSMVLVQAFSLWLIW 92 (133)
Q Consensus 16 ~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~-~~~~l--~~~~~~~l~llgl~G 92 (133)
..++++.-+++.++||......|.. + ..|+.....+|.+-+.+++.......++. +.... +.+.+..+.+.++ =
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-l 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-L 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-H
Confidence 4578899999999999999999954 4 59999999999999988876655444322 11111 1122222223222 3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHhhhhhhhh
Q 043938 93 WFLGSKFISEEHSLNICNICRALPNLILNSN 123 (133)
Q Consensus 93 v~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~ 123 (133)
+.++-..|.++.+.-...++|+=+-+-|..+
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~ 112 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVN 112 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHH
Confidence 4467778888999999999998777777654
No 35
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=92.96 E-value=2.3 Score=33.77 Aligned_cols=104 Identities=17% Similarity=0.045 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhh--h-hhcc-CCc--cchHHHHHHHHHHHH
Q 043938 19 PVMVMVIVQTSYAGMNILNKLAAD-DGMNLAVLVAYRLLSAAAFVLPLAFF--F-ERNN-RPK--LTSMVLVQAFSLWLI 91 (133)
Q Consensus 19 ~~l~lil~~~~wgg~~i~~K~al~-~g~~P~~l~~~R~~iA~liL~p~a~~--~-~r~~-~~~--l~~~~~~~l~llgl~ 91 (133)
++.++++..++.|...+.-+...+ ++.+|....+|-.+.+.++.++.... . |-++ .+. -..+.+..+++.++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 888999999999999999999885 58999999999999999988777665 1 1111 100 112345667777787
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhhhhhhh
Q 043938 92 WWFLGSKFISEEHSLNICNICRALPNLILNSN 123 (133)
Q Consensus 92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~ 123 (133)
|. ..|.+.+.-.+.++|...+++.++--..+
T Consensus 235 ~~-~g~~~i~~~~~~~~al~~t~v~t~Rk~~s 265 (303)
T PF08449_consen 235 GA-LGQFFIFYLIKKFSALTTTIVTTLRKFLS 265 (303)
T ss_pred HH-HHHHHHHHHHHhcCchhhhhHHHHHHHHH
Confidence 86 45556667789999999999888765544
No 36
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=91.97 E-value=2.9 Score=34.18 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHH-HHHhhhhhccC----C-ccchHHHHHHH
Q 043938 16 GLKPVMVMVIVQTSYAGMNILNKLAA---DDGMNLAVLVAYRLLSAAAFVL-PLAFFFERNNR----P-KLTSMVLVQAF 86 (133)
Q Consensus 16 ~~~~~l~lil~~~~wgg~~i~~K~al---~~g~~P~~l~~~R~~iA~liL~-p~a~~~~r~~~----~-~l~~~~~~~l~ 86 (133)
++.+.+......+..+...+.+|..+ ++.+|++.+..|---+++.+++ |+....|.+.. . ..... ...+.
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 45677788888889999999999998 3569999999999999999998 98776665332 0 12223 34445
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHhh
Q 043938 87 SLWLIWWFLGSKFISEEHSLNICNICRALPN 117 (133)
Q Consensus 87 llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~ 117 (133)
+.+.+.. ++|...|.-+..|||..-+....
T Consensus 240 ~~sv~~f-~~Nls~f~~ig~tSalT~~V~g~ 269 (316)
T KOG1441|consen 240 LNSVLAF-LLNLSAFLVIGRTSALTYSVAGH 269 (316)
T ss_pred HHHHHHH-HHHHHHHHHHcccCchhhhhhcc
Confidence 5556664 66778999999999998776553
No 37
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=90.51 E-value=0.032 Score=45.03 Aligned_cols=92 Identities=7% Similarity=-0.044 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043938 28 TSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNN-RPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSL 106 (133)
Q Consensus 28 ~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~-~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~ 106 (133)
.++....++.+..++ .+|..+...|.++-.++-.|........- -|+ .+|. ++++=|+.|.++.. +.|++++|
T Consensus 47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-g~R~--~LiLRg~mG~tgvm-lmyya~~~ 120 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE-GKRK--WLILRGFMGFTGVM-LMYYALMY 120 (346)
T ss_pred HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCC-CcEE--EEEeehhhhhhHHH-HHHHHHhh
Confidence 666666666666653 79999999998887777777654322111 121 1121 23444555554444 68899999
Q ss_pred chHHHHHHHhhhhhhhhcc
Q 043938 107 NICNICRALPNLILNSNSS 125 (133)
Q Consensus 107 Tsa~nas~i~~l~P~~~~~ 125 (133)
-|-+.|++|.-.+|++|+-
T Consensus 121 mslaDA~vItFssPvft~i 139 (346)
T KOG4510|consen 121 MSLADAVVITFSSPVFTII 139 (346)
T ss_pred cchhheEEEEecChHHHHH
Confidence 9999999999999999864
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=82.88 E-value=18 Score=29.14 Aligned_cols=105 Identities=16% Similarity=0.015 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLG 96 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~ 96 (133)
-.+....+.+..+|++..+.+|.+-.. .+--.=+.+-+++|+++.+|+..-.-... -...+....-...|+++...-
T Consensus 147 p~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSalP 223 (292)
T COG5006 147 PVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSALP 223 (292)
T ss_pred HHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcccc
Confidence 345667778889999999999988533 44445578899999999999986432211 123345555666777777777
Q ss_pred HHHHHHHhhhchHHHHHHHhhhhhhhhc
Q 043938 97 SKFISEEHSLNICNICRALPNLILNSNS 124 (133)
Q Consensus 97 q~l~~~gL~~Tsa~nas~i~~l~P~~~~ 124 (133)
..+...+|+.-++..-+.+..+-|++-+
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aA 251 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAA 251 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHH
Confidence 7788899999999999999999998754
No 39
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=80.79 E-value=7.7 Score=31.83 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHHHHHHHHhhhhhccCCccch-------HH---H-H-HHHHHHHH
Q 043938 31 AGMNILNKLAAD---DGMN----LAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTS-------MV---L-V-QAFSLWLI 91 (133)
Q Consensus 31 gg~~i~~K~al~---~g~~----P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~-------~~---~-~-~l~llgl~ 91 (133)
+.|.+++|.+=+ +|-| |+..+..=|+.-.++++.+...+.|.+.+-.+. ++ + + ..+.=+++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 457888888732 4555 777777777777888888877665543321110 01 1 1 12223444
Q ss_pred HHHHHHHHHHHHhhhchHHHH
Q 043938 92 WWFLGSKFISEEHSLNICNIC 112 (133)
Q Consensus 92 Gv~~~q~l~~~gL~~Tsa~na 112 (133)
-+. -..++|.||.+|||+.-
T Consensus 96 Di~-gsslm~vgL~lTsASsf 115 (372)
T KOG3912|consen 96 DIA-GSSLMYVGLNLTSASSF 115 (372)
T ss_pred HHh-hhHHHHHHHHHhhHHHH
Confidence 442 34588999999999864
No 40
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=76.75 E-value=21 Score=30.24 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCc---cchHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAAD-D--GMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPK---LTSMVLVQAFSLWL 90 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~-~--g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~---l~~~~~~~l~llgl 90 (133)
..+-+..++.++.||...+..|.-.+ + .+|-=.+-.+=-++..++++|..++..+-.+|+ .+...+..+++.++
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 56677888889999999888887665 3 355555555556677888898776543322222 23334555788899
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHH
Q 043938 91 IWWFLGSKFISEEHSLNICNICRA 114 (133)
Q Consensus 91 ~Gv~~~q~l~~~gL~~Tsa~nas~ 114 (133)
+|-+..-++--.|.-.|||..+++
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~Tl 349 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTL 349 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhhee
Confidence 999999999999999999987764
No 41
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=73.68 E-value=40 Score=26.19 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=53.1
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHH
Q 043938 14 LQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWW 93 (133)
Q Consensus 14 ~~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv 93 (133)
.++.+..+.+.+..+++...+...=.++.. +||-++-..|..-- ++-..+....-|| +++.+.|.-++++- +|+
T Consensus 11 ~~~~~~~~~~~vPA~lY~~qn~L~~~al~~-ld~~t~qvl~q~kI-l~TAl~s~~~L~r---~ls~~qW~aL~lL~-~Gv 84 (244)
T PF04142_consen 11 WKSPKDTLKLAVPALLYAIQNNLQFVALSY-LDPSTFQVLSQSKI-LFTALFSVLLLKR---RLSRRQWLALFLLV-AGV 84 (244)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHhhHH-HHHHHHHHHHHHc---ccchhhHHHHHHHH-HHH
Confidence 344566777888899999999999999886 99999888887532 2222222233333 24566777777663 577
Q ss_pred HHHHH
Q 043938 94 FLGSK 98 (133)
Q Consensus 94 ~~~q~ 98 (133)
...|.
T Consensus 85 ~lv~~ 89 (244)
T PF04142_consen 85 VLVQL 89 (244)
T ss_pred heeec
Confidence 76665
No 42
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=66.73 E-value=25 Score=28.74 Aligned_cols=97 Identities=14% Similarity=0.082 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 043938 31 AGMNILNKLAAD--DGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNI 108 (133)
Q Consensus 31 gg~~i~~K~al~--~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Ts 108 (133)
.+..+..|..++ +.--|..++......+.+.++..-....++..+..++..+..++-+|+.-. ..-.+-..+++|.+
T Consensus 30 v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~-~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 30 VGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFC-ISHVLGNVSLSYVP 108 (316)
T ss_pred eeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHH-HHHHhcchhhhccc
Confidence 344556788888 777799999997777777665543333222222113345666777776642 44556668999999
Q ss_pred HHHHHHHhhhhhhhhccccc
Q 043938 109 CNICRALPNLILNSNSSINY 128 (133)
Q Consensus 109 a~nas~i~~l~P~~~~~~~~ 128 (133)
-+..-.+=++.|.+|..+-.
T Consensus 109 VsF~q~iKa~~P~~tvl~~~ 128 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSV 128 (316)
T ss_pred hhHHHHHHhhcchhHHHHHH
Confidence 99999999999999876544
No 43
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=59.51 E-value=50 Score=26.38 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCC----ccchHHHHHHHHHHHH
Q 043938 18 KPVMVMVIVQTSYAGMNI-LNKLAAD-DGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRP----KLTSMVLVQAFSLWLI 91 (133)
Q Consensus 18 ~~~l~lil~~~~wgg~~i-~~K~al~-~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~----~l~~~~~~~l~llgl~ 91 (133)
.+|+.|.. .++-...++ ..|.-.+ .....+.-.+|..+++.++++.+.+..|.+... .++...+..+++.|+.
T Consensus 155 ~GY~Wm~~-NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~ 233 (309)
T COG5070 155 PGYLWMFT-NCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLC 233 (309)
T ss_pred CceEEEeh-hhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHH
Confidence 34544443 233333333 3344433 236677788999999999999999888754211 1333344567777776
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhhh--hhhhhcccccc
Q 043938 92 WWFLGSKFISEEHSLNICNICRALPNL--ILNSNSSINYF 129 (133)
Q Consensus 92 Gv~~~q~l~~~gL~~Tsa~nas~i~~l--~P~~~~~~~~~ 129 (133)
.+ +-.++--+-++-||.|.-|-.-++ .|+.-+.+-.|
T Consensus 234 sv-giSy~saWcvrVtSSTtySMvGALNKlp~alaGlvff 272 (309)
T COG5070 234 SV-GISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFF 272 (309)
T ss_pred Hh-hhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhc
Confidence 54 344455566677777766655443 45555444333
No 44
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=58.24 E-value=64 Score=22.87 Aligned_cols=69 Identities=13% Similarity=-0.131 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHh
Q 043938 46 NLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALP 116 (133)
Q Consensus 46 ~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~ 116 (133)
||+.-++.-+..+++++..+.+..++++.+..+. .-++.++-|++|+ .+-.+.....+.-.++++....
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~-~p~w~~lGG~lG~-~~V~~~~~~vp~lG~~~~~~l~ 97 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSS-VPWWAYLGGLLGV-FFVLSNIILVPRLGAALTTILI 97 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhcc-CChHHhccHHHHH-HHHHHHHHHhhhhhHHHHHHHH
Confidence 5999999999999999877766655533333332 2234555788886 4555666666666666655543
No 45
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=58.10 E-value=4.9 Score=32.70 Aligned_cols=96 Identities=6% Similarity=-0.004 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADDGMNLAV----LVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIW 92 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~----l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~G 92 (133)
.+...+.+...++-+..+++-|..=+ ..+.+. +...-...+.+....+. .-.+| -.++|++.+..+|++|
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig----~~~lP-~cgkdr~l~~~lGvfg 263 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIG----AVQLP-HCGKDRWLFVNLGVFG 263 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhcc----ceecC-ccccceEEEEEehhhh
Confidence 34456667777788888888886522 233322 22333333333332221 22345 4677898899999999
Q ss_pred HHHHHHHHHHHhhhchHHHHHHHhhhh
Q 043938 93 WFLGSKFISEEHSLNICNICRALPNLI 119 (133)
Q Consensus 93 v~~~q~l~~~gL~~Tsa~nas~i~~l~ 119 (133)
. +.|++.-.|+|.--|.-.|++..+-
T Consensus 264 f-igQIllTm~lQiErAGpvaim~~~d 289 (346)
T KOG4510|consen 264 F-IGQILLTMGLQIERAGPVAIMTYTD 289 (346)
T ss_pred h-HHHHHHHHHhhhhccCCeehhhHHH
Confidence 6 8999999999999888888776543
No 46
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.03 E-value=71 Score=26.27 Aligned_cols=92 Identities=20% Similarity=0.064 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHH--------hhhhhccCCccchHHHHHHH
Q 043938 16 GLKPVMVMVIVQTSYAGMNILNKLAAD-DGMNLAVLVAYRLLSAAAFVLPLA--------FFFERNNRPKLTSMVLVQAF 86 (133)
Q Consensus 16 ~~~~~l~lil~~~~wgg~~i~~K~al~-~g~~P~~l~~~R~~iA~liL~p~a--------~~~~r~~~~~l~~~~~~~l~ 86 (133)
+..+|..+....+.-+...+..|.-++ .+.+-+.+++|-.+.+.+.+.... +-.+...++ ....+..+.
T Consensus 155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~ 232 (314)
T KOG1444|consen 155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS--DSSVLVVML 232 (314)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc--chhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHH
Q 043938 87 SLWLIWWFLGSKFISEEHSLNICN 110 (133)
Q Consensus 87 llgl~Gv~~~q~l~~~gL~~Tsa~ 110 (133)
+.+++|. +-+++.++-.+.+||+
T Consensus 233 lScv~gf-~isy~s~~ct~~~SAt 255 (314)
T KOG1444|consen 233 LSCVMGF-GISYTSFLCTRVNSAT 255 (314)
T ss_pred HHHHHHH-HHHHHHHHHHhhcccc
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=51.90 E-value=1.4e+02 Score=24.79 Aligned_cols=110 Identities=11% Similarity=-0.046 Sum_probs=0.0
Q ss_pred hhhcChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccC---CccchHHHHHHHHH
Q 043938 12 LKLQGLKPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNR---PKLTSMVLVQAFSL 88 (133)
Q Consensus 12 ~~~~~~~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~---~~l~~~~~~~l~ll 88 (133)
|.++-..+++..+++.++||..++..|..-+-.-..++. ..-.....++-+..+.+..+.-. ...+.+.+..-++.
T Consensus 1 m~~~~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 1 MSNAIILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred CCchhHHHHHHHHHHHHHhhcccccccccCCCchhHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Q ss_pred HHH----HHHHHHHHHHHHhhhchHHHHHH---Hhhhhhhh
Q 043938 89 WLI----WWFLGSKFISEEHSLNICNICRA---LPNLILNS 122 (133)
Q Consensus 89 gl~----Gv~~~q~l~~~gL~~Tsa~nas~---i~~l~P~~ 122 (133)
|.+ ++..++..-+.|+..+.|...+. ..+++|++
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i 120 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPI 120 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
No 48
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=51.89 E-value=91 Score=22.69 Aligned_cols=33 Identities=9% Similarity=-0.205 Sum_probs=21.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 043938 76 KLTSMVLVQAFSLWLIWWFLGSKFISEEHSLNI 108 (133)
Q Consensus 76 ~l~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Ts 108 (133)
.-+.||+.-++++.++=..+-|+--|...+..+
T Consensus 43 ~tKyRDL~II~~L~ll~l~giq~~~y~~~~~~~ 75 (149)
T PF11694_consen 43 DTKYRDLSIIALLLLLLLIGIQYSDYQQNQNQH 75 (149)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 346688887777777666666666665554433
No 49
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.63 E-value=46 Score=27.29 Aligned_cols=93 Identities=17% Similarity=0.044 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHhhhh-hc---cCCcc-chHHHHHHHHHHH
Q 043938 17 LKPVMVMVIVQTSYAGMNILNKLAADD-GMNLAVLVAYRLLSAAAFVLPLAFFFE-RN---NRPKL-TSMVLVQAFSLWL 90 (133)
Q Consensus 17 ~~~~l~lil~~~~wgg~~i~~K~al~~-g~~P~~l~~~R~~iA~liL~p~a~~~~-r~---~~~~l-~~~~~~~l~llgl 90 (133)
+.+.+.-..+.+.-+.+.+-.|..+.. |=.-+-+++|-...|.++++|...+.. -+ ..|.. ..+-|..+.+-|+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 455666677778888888888865532 223467899999999999999765432 11 22333 4566777888888
Q ss_pred HHHHHHHHHHHHHhhhchHH
Q 043938 91 IWWFLGSKFISEEHSLNICN 110 (133)
Q Consensus 91 ~Gv~~~q~l~~~gL~~Tsa~ 110 (133)
+|.. -++...+-+|-|||.
T Consensus 264 fgF~-mgyvTg~QIK~TSpl 282 (347)
T KOG1442|consen 264 FGFA-MGYVTGWQIKVTSPL 282 (347)
T ss_pred HHHH-hhheeeEEEEecccc
Confidence 8864 444556667777763
No 50
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=46.15 E-value=1e+02 Score=21.63 Aligned_cols=87 Identities=9% Similarity=-0.138 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHH
Q 043938 18 KPVMVMVIVQTSYAGMNILNKLAADDGMNLAVLVAYRLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWLIWWFLGS 97 (133)
Q Consensus 18 ~~~l~lil~~~~wgg~~i~~K~al~~g~~P~~l~~~R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl~Gv~~~q 97 (133)
++|+.++...++-+...+.-|..+++ .++...... . . .... ... +....+.+|+.+..+..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~------~~~~-~~~---------~p~~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-I------AALL-AFG---------LALRAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-H------HHHH-HHh---------ccHHHHHHHHHHHHHHH
Confidence 36777777777778888999988864 433221111 0 0 0000 000 01114556677666777
Q ss_pred HHHHHHhhhchHHHHHHHhhhhhhhh
Q 043938 98 KFISEEHSLNICNICRALPNLILNSN 123 (133)
Q Consensus 98 ~l~~~gL~~Tsa~nas~i~~l~P~~~ 123 (133)
.+...+++.-.++.|..+.++.|+..
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v 88 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALV 88 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 77788888888888887777776554
No 51
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.49 E-value=60 Score=24.41 Aligned_cols=13 Identities=8% Similarity=0.289 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 043938 19 PVMVMVIVQTSYA 31 (133)
Q Consensus 19 ~~l~lil~~~~wg 31 (133)
+...+++..++.|
T Consensus 112 gi~tli~~~i~~G 124 (206)
T PF06570_consen 112 GIITLILVSIVGG 124 (206)
T ss_pred cHHHHHHHHHHHH
Confidence 4444444444433
No 52
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=37.12 E-value=1.3e+02 Score=20.32 Aligned_cols=41 Identities=12% Similarity=-0.152 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhcccc
Q 043938 87 SLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSIN 127 (133)
Q Consensus 87 llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~ 127 (133)
..++.+...+..+.-.+++.-+.+.+..+..+.|+++.-+-
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~ 81 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAA 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Confidence 33446666777888888888888888888888888775443
No 53
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=34.76 E-value=1.6e+02 Score=23.38 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=25.7
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 043938 15 QGLKPVMVMVIVQTSYAGMNILNKLAADDG 44 (133)
Q Consensus 15 ~~~~~~l~lil~~~~wgg~~i~~K~al~~g 44 (133)
+|..+..+.+++-+++|.+++-.+...+++
T Consensus 180 ~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 180 KRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred chhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 567788888899999999999999998763
No 54
>KOG2516 consensus Protein involved in dolichol pathway for N-glycosylation (mannosyltransferase family) [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.88 E-value=33 Score=29.58 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=37.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHH----HHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHH
Q 043938 33 MNILNKLAADDGMNLAVLVAY----RLLSAAAFVLPLAFFFERNNRPKLTSMVLVQAFSLWL 90 (133)
Q Consensus 33 ~~i~~K~al~~g~~P~~l~~~----R~~iA~liL~p~a~~~~r~~~~~l~~~~~~~l~llgl 90 (133)
|.+..| .-+-|.+|+.--+| |...+++++.|+.+..+|+.+| +....+.-+++.++
T Consensus 237 NvV~nk-Ss~wGtsPflwYFysaLpr~~~ttlLlvpig~~~~~~~~~-~vl~sL~fi~lySf 296 (517)
T KOG2516|consen 237 NVVENK-SSNWGTSPFLWYFYSALPRLFLTTLLLVPIGLVLIPRLRP-LVLVSLFFIFLYSF 296 (517)
T ss_pred Eeeccc-ccccCCCccHHHHHHHHHHHHHHHHHHHhhhhhcccCccc-eeHHHHHHHHHHHh
Confidence 456666 44679999988777 7777888999999887775444 33434444444443
No 55
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=32.72 E-value=1.5e+02 Score=19.99 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Q 043938 79 SMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRA 114 (133)
Q Consensus 79 ~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~ 114 (133)
+|.+..-.++|+++.+....+.+.|+.-+-+...+.
T Consensus 44 ~r~llea~lCg~lal~~~~~L~~~gl~~~~a~~~g~ 79 (100)
T PF05106_consen 44 RRRLLEALLCGLLALFARSLLEYFGLPQSLAVFIGG 79 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhee
Confidence 457888999999999999999999986555544443
No 56
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=28.27 E-value=1.7e+02 Score=22.70 Aligned_cols=50 Identities=6% Similarity=-0.088 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhhhhhhccccc
Q 043938 78 TSMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRALPNLILNSNSSINY 128 (133)
Q Consensus 78 ~~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~P~~~~~~~~ 128 (133)
.+++..++.+=+++- ...+.+.|.++++.+|+.--++..+-.+.|+=.-+
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~ 62 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSV 62 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHH
Confidence 456777777778875 47888999999999999999998888877764433
No 57
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=27.44 E-value=3.7e+02 Score=22.46 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHhhhhhc---cC-Ccc------chHHHHH
Q 043938 18 KPVMVMVIVQTSYAGMNILNKLAADDG---MNLAVLVAYRLLSAAAFVLPLAFFFERN---NR-PKL------TSMVLVQ 84 (133)
Q Consensus 18 ~~~l~lil~~~~wgg~~i~~K~al~~g---~~P~~l~~~R~~iA~liL~p~a~~~~r~---~~-~~l------~~~~~~~ 84 (133)
.-++.++...+.+++.....|.+-.++ ..|-+-++.--.+-.++.....+..+|+ +. ..+ .+++..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 457788888999999999999987665 5566666666666666555554444322 11 111 2234444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHhhhh
Q 043938 85 AFSLWLIWWFLGSKFISEEHSLNICNICRALPNLI 119 (133)
Q Consensus 85 l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i~~l~ 119 (133)
..+=+++-. ..+.++|.++.+-+|+.-.+..++=
T Consensus 95 ~~vPa~iYa-lqNnl~yval~~ldaatyqVt~qlK 128 (345)
T KOG2234|consen 95 VSVPALIYA-LQNNLQYVALSNLDAATYQVTYQLK 128 (345)
T ss_pred HHHHHHHHH-HhhhHHHHHHhcCCchhhhhhhhHH
Confidence 555555553 5667999999999988777666553
No 58
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=26.88 E-value=2.1e+02 Score=19.55 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH
Q 043938 79 SMVLVQAFSLWLIWWFLGSKFISEEHSLNICNICRAL 115 (133)
Q Consensus 79 ~~~~~~l~llgl~Gv~~~q~l~~~gL~~Tsa~nas~i 115 (133)
++.+..-.++|.++.+.-..+.+.|+...-+...+.+
T Consensus 46 ~~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~ 82 (107)
T TIGR01594 46 KRKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGM 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhh
Confidence 4678888999999999999999999975444444433
No 59
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins. The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex
Probab=20.06 E-value=6.5e+02 Score=22.69 Aligned_cols=25 Identities=12% Similarity=-0.463 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 043938 83 VQAFSLWLIWWFLGSKFISEEHSLN 107 (133)
Q Consensus 83 ~~l~llgl~Gv~~~q~l~~~gL~~T 107 (133)
..+|..|+.|+.+-.++||.+++.=
T Consensus 584 ~~~F~~~l~ai~glf~~Yw~~l~lF 608 (636)
T PF05817_consen 584 AILFHGGLGAIEGLFFLYWLGLNLF 608 (636)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3355555555555555666665543
Done!