Query 043938
Match_columns 133
No_of_seqs 149 out of 1039
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:51:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 71.8 18 0.00061 23.5 8.5 40 87-126 34-74 (110)
2 2i68_A Protein EMRE; transmemb 69.6 2.9 0.0001 28.9 2.5 41 87-127 34-75 (137)
3 1bev_4 Bovine enterovirus coat 9.6 77 0.0026 19.3 0.3 9 123-131 21-29 (68)
4 3mp7_B Preprotein translocase 8.6 2.1E+02 0.0073 16.7 2.1 12 85-96 41-52 (61)
5 1hxs_4 Genome polyprotein, coa 8.5 81 0.0028 19.2 0.1 8 124-131 22-29 (68)
6 1ncq_D Coat protein VP4; HRV, 8.3 81 0.0028 19.2 0.1 8 124-131 22-29 (68)
7 1aym_4 HRV16, human rhinovirus 8.0 84 0.0029 19.1 0.0 8 124-131 22-29 (68)
8 1c8m_4 HRV16, human rhinovirus 7.2 1.1E+02 0.0037 19.1 0.3 8 124-131 22-29 (77)
9 4gb3_4 Coat protein 4; capsid 6.4 1.2E+02 0.004 18.5 0.1 8 124-131 22-29 (68)
10 3vbh_D EV71, genome polyprotei 5.6 1.5E+02 0.005 17.4 0.2 8 124-131 12-19 (58)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=71.83 E-value=18 Score=23.54 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHH-hhhhhhhhccc
Q 043938 87 SLWLIWWFLGSKFISEEHSLNICNICRAL-PNLILNSNSSI 126 (133)
Q Consensus 87 llgl~Gv~~~q~l~~~gL~~Tsa~nas~i-~~l~P~~~~~~ 126 (133)
+.++.+...+..++..++++.+.+.+..+ .++.|+.+.-+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~ 74 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLL 74 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHH
Confidence 45555666677777788888888888777 78888877544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=69.59 E-value=2.9 Score=28.88 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHH-hhhhhhhhcccc
Q 043938 87 SLWLIWWFLGSKFISEEHSLNICNICRAL-PNLILNSNSSIN 127 (133)
Q Consensus 87 llgl~Gv~~~q~l~~~gL~~Tsa~nas~i-~~l~P~~~~~~~ 127 (133)
++|+++..++..++..++++..++.+..+ .++.|+.+.-+-
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g 75 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLS 75 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence 45666777788888899999999988888 899998876443
No 3
>1bev_4 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus VG-5-27, picornavirus, icosahedral virus; HET: MYR; 3.00A {Bovine enterovirus} SCOP: b.121.4.1
Probab=9.55 E-value=77 Score=19.30 Aligned_cols=9 Identities=56% Similarity=0.859 Sum_probs=4.8
Q ss_pred hcccccccc
Q 043938 123 NSSINYFNL 131 (133)
Q Consensus 123 ~~~~~~~~~ 131 (133)
-++|||+|.
T Consensus 21 gs~i~ytnI 29 (68)
T 1bev_4 21 GSTINYNNI 29 (68)
T ss_dssp -CCCBCCCC
T ss_pred CceEeeeee
Confidence 355666664
No 4
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=8.61 E-value=2.1e+02 Score=16.70 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 043938 85 AFSLWLIWWFLG 96 (133)
Q Consensus 85 l~llgl~Gv~~~ 96 (133)
++++|++|.+..
T Consensus 41 ~~i~G~iGf~Ik 52 (61)
T 3mp7_B 41 IILIGLIGMLIR 52 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444455554433
No 5
>1hxs_4 Genome polyprotein, coat protein VP4; picornavirus, AB initio phase DETE icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1} SCOP: b.121.4.1 PDB: 1ar6_4* 1ar7_4* 1ar8_4* 1ar9_4* 1asj_4* 1al2_4* 1nn8_4 1po1_4* 1po2_4* 1vbd_4* 2plv_4* 3epc_4* 1eah_4* 3epf_4* 1pvc_4* 1piv_4* 1vba_4* 1vbb_4* 1vbc_4* 1vbe_4* ...
Probab=8.49 E-value=81 Score=19.20 Aligned_cols=8 Identities=50% Similarity=0.849 Sum_probs=4.8
Q ss_pred cccccccc
Q 043938 124 SSINYFNL 131 (133)
Q Consensus 124 ~~~~~~~~ 131 (133)
++|||+|.
T Consensus 22 s~i~ytnI 29 (68)
T 1hxs_4 22 STINYTTI 29 (68)
T ss_dssp SCCEEEEC
T ss_pred ceEeeeee
Confidence 45666664
No 6
>1ncq_D Coat protein VP4; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_4* 1hrv_4* 1hri_4* 1na1_D* 1k5m_D* 1r08_4* 1r09_4* 1rmu_4 1ruc_4* 1rud_4* 1rue_4* 1ruf_4 1rug_4* 1ruh_4* 1rui_4* 1ruj_4 1rvf_4 1vrh_4* 2hwb_4* 2hwc_4* ...
Probab=8.26 E-value=81 Score=19.19 Aligned_cols=8 Identities=13% Similarity=0.218 Sum_probs=0.4
Q ss_pred cccccccc
Q 043938 124 SSINYFNL 131 (133)
Q Consensus 124 ~~~~~~~~ 131 (133)
++|||+|.
T Consensus 22 s~i~ytnI 29 (68)
T 1ncq_D 22 SNQTFTVI 29 (68)
T ss_dssp -------C
T ss_pred ceEeeeee
Confidence 34555543
No 7
>1aym_4 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_4* 1d3e_4 1ncr_D* 1nd2_D* 1qju_4* 1qjx_4* 1qjy_4* 1nd3_D* 1fpn_4* 1v9u_4* 3dpr_D* 1r1a_4* 2hwd_4* 2hwe_4* 2hwf_4*
Probab=8.00 E-value=84 Score=19.13 Aligned_cols=8 Identities=75% Similarity=1.348 Sum_probs=3.9
Q ss_pred cccccccc
Q 043938 124 SSINYFNL 131 (133)
Q Consensus 124 ~~~~~~~~ 131 (133)
++|||+|.
T Consensus 22 s~i~ytnI 29 (68)
T 1aym_4 22 SSLNYFNI 29 (68)
T ss_dssp -CCCEEEE
T ss_pred ceEeeeee
Confidence 45566554
No 8
>1c8m_4 HRV16, human rhinovirus 16 coat protein; antiviral compound, drug, WIN compound, icosahedral virus; HET: W11; 2.80A {Human rhinovirus 16} SCOP: b.121.4.1
Probab=7.16 E-value=1.1e+02 Score=19.07 Aligned_cols=8 Identities=88% Similarity=1.398 Sum_probs=3.9
Q ss_pred cccccccc
Q 043938 124 SSINYFNL 131 (133)
Q Consensus 124 ~~~~~~~~ 131 (133)
++|||+|.
T Consensus 22 s~i~ytnI 29 (77)
T 1c8m_4 22 SSINYFNI 29 (77)
T ss_dssp -CCCCCCB
T ss_pred ceEeeeee
Confidence 45566554
No 9
>4gb3_4 Coat protein 4; capsid protein; HET: PLM MYR; 2.74A {Human coxsackievirus B3} PDB: 2x5i_D* 3iyp_D* 1cov_4* 1jew_4 1upn_D 1h8t_D* 1mqt_D* 1oop_D* 1d4m_4* 1ev1_4* 2c8i_D
Probab=6.37 E-value=1.2e+02 Score=18.49 Aligned_cols=8 Identities=50% Similarity=0.742 Sum_probs=0.0
Q ss_pred cccccccc
Q 043938 124 SSINYFNL 131 (133)
Q Consensus 124 ~~~~~~~~ 131 (133)
++|||+|.
T Consensus 22 s~i~ytnI 29 (68)
T 4gb3_4 22 SIIHYTNI 29 (68)
T ss_dssp --CEEEEC
T ss_pred ceEeeEEE
No 10
>3vbh_D EV71, genome polyprotein, capsid protein VP4; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_D* 3vbs_D*
Probab=5.59 E-value=1.5e+02 Score=17.44 Aligned_cols=8 Identities=50% Similarity=0.849 Sum_probs=0.0
Q ss_pred cccccccc
Q 043938 124 SSINYFNL 131 (133)
Q Consensus 124 ~~~~~~~~ 131 (133)
+.|||+|.
T Consensus 12 s~i~ytnI 19 (58)
T 3vbh_D 12 STINYTTI 19 (58)
T ss_dssp CSSCCCCC
T ss_pred ceEeEEEE
Done!