Query 043938
Match_columns 133
No_of_seqs 149 out of 1039
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 16:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043938.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043938hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 12.6 56 0.0041 17.7 1.9 21 78-98 19-47 (56)
2 d1ppjd2 f.23.11.1 (D:196-241) 10.2 40 0.0029 17.5 0.7 23 52-74 10-32 (46)
3 d2hi7b1 a.29.15.1 (B:14-162) D 5.8 3.1E+02 0.023 16.4 4.1 22 43-64 23-45 (149)
4 d1jb0m_ f.23.19.1 (M:) Subunit 5.4 1.7E+02 0.012 13.5 1.6 15 109-123 7-21 (31)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 3.8 6.8E+02 0.05 17.7 5.5 16 43-58 263-278 (472)
6 d2je8a2 b.1.4.1 (A:784-864) Be 3.6 1E+02 0.0075 17.4 -0.1 9 123-131 40-48 (81)
7 d3cx5d2 f.23.11.1 (D:261-307) 3.2 2E+02 0.014 14.7 0.8 18 54-71 12-29 (47)
8 d1ygya4 d.81.2.2 (A:317-451) D 3.1 3E+02 0.022 16.5 1.9 27 105-131 44-71 (135)
9 d1jb0j_ f.23.18.1 (J:) Subunit 3.0 2.8E+02 0.021 13.7 1.4 23 107-129 10-32 (41)
10 d2pgda1 a.100.1.1 (A:177-473) 2.6 1.3E+02 0.0093 21.3 -0.5 12 119-130 243-254 (297)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.61 E-value=56 Score=17.72 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=10.9
Q ss_pred chHHHHH--------HHHHHHHHHHHHHH
Q 043938 78 TSMVLVQ--------AFSLWLIWWFLGSK 98 (133)
Q Consensus 78 ~~~~~~~--------l~llgl~Gv~~~q~ 98 (133)
+++++.+ ++++|+.|...+-.
T Consensus 19 ~~~Ef~~ia~v~~iG~~i~G~IGf~I~li 47 (56)
T d1rh5b_ 19 TKDEYLAVAKVTALGISLLGIIGYIIHVP 47 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566655 44555555544433
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.15 E-value=40 Score=17.51 Aligned_cols=23 Identities=22% Similarity=0.540 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccC
Q 043938 52 AYRLLSAAAFVLPLAFFFERNNR 74 (133)
Q Consensus 52 ~~R~~iA~liL~p~a~~~~r~~~ 74 (133)
..+.++...++..++++..|..|
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR~~W 32 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666655555433
No 3
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=5.76 E-value=3.1e+02 Score=16.41 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=14.8
Q ss_pred CCCCHHHHHHH-HHHHHHHHHHH
Q 043938 43 DGMNLAVLVAY-RLLSAAAFVLP 64 (133)
Q Consensus 43 ~g~~P~~l~~~-R~~iA~liL~p 64 (133)
.|+.|..+-.+ |+....+++..
T Consensus 23 ~gl~PC~LCi~QR~~~~~i~~~~ 45 (149)
T d2hi7b1 23 MLLKPCVLCIYERVALFGVLGAA 45 (149)
T ss_dssp SCCCCCSHHHHHHHHHHTTTHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHH
Confidence 48999998776 77655444433
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=5.44 E-value=1.7e+02 Score=13.49 Aligned_cols=15 Identities=7% Similarity=-0.175 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhhhhh
Q 043938 109 CNICRALPNLILNSN 123 (133)
Q Consensus 109 a~nas~i~~l~P~~~ 123 (133)
-...++..+++|.+-
T Consensus 7 qv~valvial~pg~l 21 (31)
T d1jb0m_ 7 QVYVALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667778888764
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=3.76 E-value=6.8e+02 Score=17.72 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHHHHH
Q 043938 43 DGMNLAVLVAYRLLSA 58 (133)
Q Consensus 43 ~g~~P~~l~~~R~~iA 58 (133)
.-++|..+.+.=.+.-
T Consensus 263 ~pl~~~qILwinli~d 278 (472)
T d1wpga4 263 EALIPVQLLWVNLVTD 278 (472)
T ss_dssp CSCCHHHHHHHHHTTT
T ss_pred ccccHHHHHHHHHHhH
Confidence 3577777776655543
No 6
>d2je8a2 b.1.4.1 (A:784-864) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.60 E-value=1e+02 Score=17.42 Aligned_cols=9 Identities=44% Similarity=0.700 Sum_probs=6.8
Q ss_pred hcccccccc
Q 043938 123 NSSINYFNL 131 (133)
Q Consensus 123 ~~~~~~~~~ 131 (133)
.+|=|||+|
T Consensus 40 ~fSDN~FdL 48 (81)
T d2je8a2 40 RYSDNFFDL 48 (81)
T ss_dssp EESCCSEEE
T ss_pred eEecCeEEe
Confidence 677788876
No 7
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.15 E-value=2e+02 Score=14.73 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 043938 54 RLLSAAAFVLPLAFFFER 71 (133)
Q Consensus 54 R~~iA~liL~p~a~~~~r 71 (133)
.+++...++...++...|
T Consensus 12 K~~~i~s~l~~~~~y~KR 29 (47)
T d3cx5d2 12 KTVIILSSLYLLSIWVKK 29 (47)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 8
>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.08 E-value=3e+02 Score=16.45 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=18.5
Q ss_pred hhchHHHHHHHh-hhhhhhhcccccccc
Q 043938 105 SLNICNICRALP-NLILNSNSSINYFNL 131 (133)
Q Consensus 105 ~~Tsa~nas~i~-~l~P~~~~~~~~~~~ 131 (133)
+.|++...+++- -+.|...-++||-|-
T Consensus 44 ~~~~~lt~a~l~G~L~~~~~~~VN~VNA 71 (135)
T d1ygya4 44 EEVEVLRLSALRGLFSAVIEDAVTFVNA 71 (135)
T ss_dssp SCCHHHHHHHHHHHTGGGSCTTCCCCCH
T ss_pred ccccHHHHHHHHHHHhcccccccchhhH
Confidence 456666655555 477877788888774
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=2.99 E-value=2.8e+02 Score=13.66 Aligned_cols=23 Identities=9% Similarity=-0.016 Sum_probs=12.4
Q ss_pred chHHHHHHHhhhhhhhhcccccc
Q 043938 107 NICNICRALPNLILNSNSSINYF 129 (133)
Q Consensus 107 Tsa~nas~i~~l~P~~~~~~~~~ 129 (133)
|-|.-+++-....-.+...||-|
T Consensus 10 tAPVla~~w~~~tAG~lIEiNRF 32 (41)
T d1jb0j_ 10 TAPVLAAIWMTITAGILIEFNRF 32 (41)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555543
No 10
>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}
Probab=2.60 E-value=1.3e+02 Score=21.31 Aligned_cols=12 Identities=0% Similarity=0.412 Sum_probs=10.0
Q ss_pred hhhhhccccccc
Q 043938 119 ILNSNSSINYFN 130 (133)
Q Consensus 119 ~P~~~~~~~~~~ 130 (133)
+|++.++.+||+
T Consensus 243 ~P~lssaL~y~~ 254 (297)
T d2pgda1 243 MPCFTTALSFYD 254 (297)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 688888888886
Done!