BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043939
         (227 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0I348|XYLG_HAES1 Xylose import ATP-binding protein XylG OS=Haemophilus somnus
           (strain 129Pt) GN=xylG PE=3 SV=1
          Length = 504

 Score = 35.4 bits (80), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 24  FSLSLQTVLILFAPLRKGTGNKLIISVIWSAYLLADWAANF---AVGLIAENAKDTSEKK 80
            S+SL+T  IL      G+G   ++ V+   Y   D+          L A+N KDT EK 
Sbjct: 23  ISISLETGEILSLCGENGSGKSTLMKVLCGIYPSGDYEGEIYFSGEKLTAKNIKDTEEKG 82

Query: 81  ----HKELLAFWAPFLLLHL-GGPDTITAFALEDNELWLR 115
               H+EL       +L ++  G +   A    DN+++LR
Sbjct: 83  ISIIHQELTLVKNMSVLENMFLGNEITQAGITNDNKMYLR 122


>sp|P0ADA1|TESA_ECOLI Acyl-CoA thioesterase I OS=Escherichia coli (strain K12) GN=tesA
           PE=1 SV=1
          Length = 208

 Score = 34.3 bits (77), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 30  TVLILFAPLRKGTGNKLIISVIWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWA 89
           T+LIL   L    G ++  S  W A L   W +  +V + A  + DTS++    L A   
Sbjct: 29  TLLILGDSL--SAGYRMSASAAWPALLNDKWQSKTSV-VNASISGDTSQQGLARLPALLK 85

Query: 90  P----FLLLHLGGPDTITAFALEDNELWLRHLFGLIFQAVAAGYIFLLSLPGN 138
                ++L+ LGG D +  F  +  E  LR +   +  A A   +  + LP N
Sbjct: 86  QHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPAN 138


>sp|P0ADA2|TESA_ECOL6 Acyl-CoA thioesterase I OS=Escherichia coli O6:H1 (strain CFT073 /
           ATCC 700928 / UPEC) GN=tesA PE=3 SV=1
          Length = 208

 Score = 34.3 bits (77), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 30  TVLILFAPLRKGTGNKLIISVIWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWA 89
           T+LIL   L    G ++  S  W A L   W +  +V + A  + DTS++    L A   
Sbjct: 29  TLLILGDSL--SAGYRMSASAAWPALLNDKWQSKTSV-VNASISGDTSQQGLARLPALLK 85

Query: 90  P----FLLLHLGGPDTITAFALEDNELWLRHLFGLIFQAVAAGYIFLLSLPGN 138
                ++L+ LGG D +  F  +  E  LR +   +  A A   +  + LP N
Sbjct: 86  QHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPAN 138


>sp|Q12836|ZP4_HUMAN Zona pellucida sperm-binding protein 4 OS=Homo sapiens GN=ZP4 PE=2
           SV=1
          Length = 540

 Score = 33.9 bits (76), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 16/64 (25%), Positives = 30/64 (46%)

Query: 38  LRKGTGNKLIISVIWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWAPFLLLHLG 97
           +RKG G+ +++   +S+  + +W +++ + +  E A     K   E      P  LL   
Sbjct: 77  IRKGPGSSVVLEATYSSCYVTEWDSHYIMPVGVEGAGAAEHKVVTERKLLKCPMDLLARD 136

Query: 98  GPDT 101
            PDT
Sbjct: 137 APDT 140


>sp|Q5FUA3|LPXB_GLUOX Lipid-A-disaccharide synthase OS=Gluconobacter oxydans (strain
           621H) GN=lpxB PE=3 SV=1
          Length = 415

 Score = 33.1 bits (74), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 120 LIFQAVAAGYIFLLSLPGNQLLFPTILIFIAGIIKYVERTRALFLASSEKFRDSMLRKPD 179
           L+F  V  G +  L L     LFP   + + G+++ V R R L     E  +D  LRKPD
Sbjct: 58  LVFAGVGGGRMEALGL---HSLFPMSDLAVMGLVEVVPRLRQLSQRLLEAVQDIELRKPD 114


>sp|Q86PM4|FGFR_HYDVU Fibroblast growth factor receptor OS=Hydra vulgaris GN=FGFR PE=2
           SV=1
          Length = 816

 Score = 32.3 bits (72), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 12/61 (19%)

Query: 146 LIFIAGIIKYVERTRALFLASSEKFRDSMLRKPDPGPNYAKFVETYVSNIRANIQTGISL 205
           LIF+A +I ++ R R     S +KF++S +       NY K +ET + N+  N  +G+++
Sbjct: 382 LIFVAFVIFFICRVR-----SKDKFKNSNI-------NYIKPLETVILNLGDNNTSGVTM 429

Query: 206 V 206
           V
Sbjct: 430 V 430


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.142    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,256,147
Number of Sequences: 539616
Number of extensions: 3476352
Number of successful extensions: 8699
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8698
Number of HSP's gapped (non-prelim): 8
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)