Query 043939
Match_columns 227
No_of_seqs 153 out of 329
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 09:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13968 DUF4220: Domain of un 100.0 2.9E-48 6.4E-53 355.4 11.8 157 51-211 1-157 (362)
2 TIGR02587 putative integral me 58.4 29 0.00062 32.1 6.1 116 14-133 35-161 (271)
3 PF12273 RCR: Chitin synthesis 36.9 20 0.00043 28.7 1.4 39 16-54 2-41 (130)
4 cd05833 Ribosomal_P2 Ribosomal 36.7 16 0.00034 29.2 0.8 19 89-107 5-23 (109)
5 TIGR02737 caa3_CtaG cytochrome 33.2 1.1E+02 0.0024 28.1 5.7 98 15-121 10-117 (281)
6 PF09925 DUF2157: Predicted me 32.2 2.1E+02 0.0046 23.0 6.8 42 47-93 90-131 (145)
7 PTZ00373 60S Acidic ribosomal 31.7 21 0.00046 28.7 0.8 20 88-107 6-25 (112)
8 PRK15120 lipopolysaccharide AB 31.7 3.1E+02 0.0067 25.3 8.6 78 14-97 264-341 (366)
9 PF00367 PTS_EIIB: phosphotran 30.1 37 0.0008 21.7 1.5 16 90-105 2-17 (35)
10 COG3336 Predicted membrane pro 29.2 90 0.0019 29.3 4.5 84 14-102 11-101 (299)
11 PRK15071 lipopolysaccharide AB 26.5 5E+02 0.011 23.7 9.3 77 15-97 270-347 (356)
12 PF09622 DUF2391: Putative int 26.3 2.6E+02 0.0057 25.7 6.9 116 15-133 32-157 (267)
13 PF09773 Meckelin: Meckelin (T 25.4 2E+02 0.0044 30.5 6.8 61 10-70 357-423 (853)
14 PF03739 YjgP_YjgQ: Predicted 22.3 5.7E+02 0.012 22.9 9.1 78 11-94 267-344 (354)
15 PF07946 DUF1682: Protein of u 22.2 55 0.0012 30.3 1.8 35 13-47 1-36 (321)
16 PF10754 DUF2569: Protein of u 20.1 4.8E+02 0.01 21.3 6.8 22 50-71 90-111 (149)
No 1
>PF13968 DUF4220: Domain of unknown function (DUF4220)
Probab=100.00 E-value=2.9e-48 Score=355.42 Aligned_cols=157 Identities=50% Similarity=0.869 Sum_probs=147.8
Q ss_pred HHHHHhhhhHHHHHHHHHHhhccCCCccccccchhhhhHHHHHHHhcCCCCccccccCcchHHHHHHHHHHHHhhhhhhe
Q 043939 51 IWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWAPFLLLHLGGPDTITAFALEDNELWLRHLFGLIFQAVAAGYI 130 (227)
Q Consensus 51 lWlAYllad~va~YaLG~Ls~~~~~~~~~~~~~L~afWApfLLlHLGGpDtITAyslEDNelW~Rhll~l~~Qv~~a~Yv 130 (227)
+|+||++||++|+||||+||+++ ++.+++|++|||||||+||||||||||||+||||+|+||++++++|+++++||
T Consensus 1 lWlay~~sd~~a~Y~LG~l~~~~----~~~~~~l~~~WAp~LLlhlgg~d~itaysleDn~lw~R~ll~ll~qv~~a~Yv 76 (362)
T PF13968_consen 1 LWLAYLLSDSLATYALGLLQSSS----SPFKSQLFPFWAPFLLLHLGGQDTITAYSLEDNELWLRHLLTLLVQVIWALYV 76 (362)
T ss_pred CchHHhhhHHHHHHHHHHHhcCC----CCCCcchhhhHHHHHHHHhCCCcceeeeecccchHHHHHHHHHHHHhhhhhee
Confidence 69999999999999999999975 36889999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCcchHHHHHHHHHHHHHhhhhHHHHhhcChhhhhhcccCCCCCCCChHHHHHHHhhhhhcccccceeeccCcc
Q 043939 131 FLLSLPGNQLLFPTILIFIAGIIKYVERTRALFLASSEKFRDSMLRKPDPGPNYAKFVETYVSNIRANIQTGISLVPEAR 210 (227)
Q Consensus 131 ~~~s~~~~~l~~~~~lmf~~GiiKy~ER~~aL~~as~~~~r~s~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (227)
++++|+|+.+..|+++||++|++||+||+||||+||.+.+++++...|+++++|++.|++|+...++++..++...++++
T Consensus 77 ~~~~~~g~~l~~~~~lLfv~gi~K~~eR~~AL~~As~~~i~~s~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 156 (362)
T PF13968_consen 77 FYKSWSGSRLLAPAILLFVVGIIKYGERIWALRRASSRSIRSSMMGEPDPGPNYAETMEGYKYLVEEEYPKEIRILKEED 156 (362)
T ss_pred eeeecccchHHHHHHHHHHHHHHHHHHHHHHHHccchhhhHHhhhhhhcccccchhhccccchhccccccceeeeccccc
Confidence 99999888899999999999999999999999999999999999999999999999999998888888888876655554
Q ss_pred c
Q 043939 211 F 211 (227)
Q Consensus 211 ~ 211 (227)
.
T Consensus 157 ~ 157 (362)
T PF13968_consen 157 L 157 (362)
T ss_pred c
Confidence 4
No 2
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=58.43 E-value=29 Score=32.07 Aligned_cols=116 Identities=13% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHcCcccCCCchhHHH--HHHHHHhhhhHHHHHHHHHHhhccCCCcccccc---chhhhh
Q 043939 14 DNWNIRGVILFSLSLQTVLILFAPLRKGTGNKLIIS--VIWSAYLLADWAANFAVGLIAENAKDTSEKKHK---ELLAFW 88 (227)
Q Consensus 14 ~~W~ir~LVllSl~lq~~L~~~g~~Rrr~~~~~lr~--~lWlAYllad~va~YaLG~Ls~~~~~~~~~~~~---~L~afW 88 (227)
+-|.+=.++.+|+.+-+.+.+..++||+... ... -.=.||..+-.++++.|-.+..-..++ |-+. .....=
T Consensus 35 ~p~~lllll~~sl~i~~~lv~~~GFr~~~~~--~~~i~eti~ay~Iglv~S~~~L~lfgri~~~~--pl~e~Lg~vivl~ 110 (271)
T TIGR02587 35 KPRRLVLLIALMFPVLFLLNYTEGFRKRKRV--REAVIDTVEAMAIGFVCSAAMLWLFGIITPET--SLKEIVGKVAFQG 110 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CHHHHHHHHHHHh
Confidence 4889999999999999999999999998433 322 011334444444444443333311111 1111 011111
Q ss_pred HHHH------HHHhcCCCCccccccCcchHHHHHHHHHHHHhhhhhheeee
Q 043939 89 APFL------LLHLGGPDTITAFALEDNELWLRHLFGLIFQAVAAGYIFLL 133 (227)
Q Consensus 89 ApfL------LlHLGGpDtITAyslEDNelW~Rhll~l~~Qv~~a~Yv~~~ 133 (227)
.|+= =..||+.++=---+=.++..|.-.+-.+..=..+|+.+=++
T Consensus 111 vP~sIGaAlaR~~L~~~~~~~~~~~~~~~~~~~~l~dl~~~~~GAlf~afn 161 (271)
T TIGR02587 111 VPFSLGAALARQQLGDTNQNNSLSEGKQNSEYGYLAELFAMLVGALFLSFN 161 (271)
T ss_pred CcHHHHHHHHHHHhCCCcCccccchhhhcchhhhHHHHHHHHHHHHHhccc
Confidence 1211 12456654322233334455556666677777777765444
No 3
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.87 E-value=20 Score=28.69 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCccc-CCCchhHHHHHHHH
Q 043939 16 WNIRGVILFSLSLQTVLILFAPLRK-GTGNKLIISVIWSA 54 (227)
Q Consensus 16 W~ir~LVllSl~lq~~L~~~g~~Rr-r~~~~~lr~~lWlA 54 (227)
|-+=+++++.+++-+|++++-.+|| |+...-+...-|++
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCceecC
Confidence 5454555555555555555544444 33333455566665
No 4
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=36.73 E-value=16 Score=29.15 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCCcccccc
Q 043939 89 APFLLLHLGGPDTITAFAL 107 (227)
Q Consensus 89 ApfLLlHLGGpDtITAysl 107 (227)
|..||++|||.++||+-.+
T Consensus 5 aAylL~~l~g~~~pTa~dI 23 (109)
T cd05833 5 AAYLLAVLGGNASPSAADV 23 (109)
T ss_pred HHHHHHHHcCCCCCCHHHH
Confidence 6789999999999999766
No 5
>TIGR02737 caa3_CtaG cytochrome c oxidase assembly factor CtaG. Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as in Bacillus subtilis.
Probab=33.16 E-value=1.1e+02 Score=28.10 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHcCcccC--CCc--hhHHHHHHH------HHhhhhHHHHHHHHHHhhccCCCccccccch
Q 043939 15 NWNIRGVILFSLSLQTVLILFAPLRKG--TGN--KLIISVIWS------AYLLADWAANFAVGLIAENAKDTSEKKHKEL 84 (227)
Q Consensus 15 ~W~ir~LVllSl~lq~~L~~~g~~Rrr--~~~--~~lr~~lWl------AYllad~va~YaLG~Ls~~~~~~~~~~~~~L 84 (227)
.|+...++.+.+..-......|..|+| ... +.-|.+.|. +...+-++..|+=...|-+- ..|.+
T Consensus 10 ~W~p~~l~~~~~~~~~y~~~~~~~r~r~~~g~~~~~~R~~~f~~Gl~~l~~a~~spl~~~~~~lFs~HM------vqHll 83 (281)
T TIGR02737 10 LWSPYFLIILAMVGFLYFLITGPWRRRFGNSDKVTIKQKIYFLTGLLLLYIVKGSPIDLLGHIMFTAHM------VQMAV 83 (281)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH------HHHHH
Confidence 577776666666655555555533332 222 234555553 23333444555543333321 24556
Q ss_pred hhhhHHHHHHHhcCCCCccccccCcchHHHHHHHHHH
Q 043939 85 LAFWAPFLLLHLGGPDTITAFALEDNELWLRHLFGLI 121 (227)
Q Consensus 85 ~afWApfLLlHLGGpDtITAyslEDNelW~Rhll~l~ 121 (227)
...=||.|| -+|.|.+.-.-.++ .-|.|.....+
T Consensus 84 L~~vaPpLL-vlG~P~~l~~r~l~--~~~~~~~~r~l 117 (281)
T TIGR02737 84 LYLIVPPLF-ILGIPAWLWEKIFE--RPFVEQVLKFF 117 (281)
T ss_pred HHHHHHHHH-HhcCcHHHHHHHcc--cHHHHHHHHHH
Confidence 667788766 49999865433332 33444444433
No 6
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=32.25 E-value=2.1e+02 Score=23.03 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhccCCCccccccchhhhhHHHHH
Q 043939 47 IISVIWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWAPFLL 93 (227)
Q Consensus 47 lr~~lWlAYllad~va~YaLG~Ls~~~~~~~~~~~~~L~afWApfLL 93 (227)
.+-.+-+.-.+.--....-+|++.+..+ ...+++..|+.+.+
T Consensus 90 ~~~~l~~l~~~l~ga~ialigQ~y~~~~-----~~~~~~~~W~~~~l 131 (145)
T PF09925_consen 90 LAEALLLLGAVLFGALIALIGQIYQTGA-----DPWQLFLLWALLAL 131 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcCCC-----chHHHHHHHHHHHH
Confidence 3333334444444455666777776432 34578999987664
No 7
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=31.73 E-value=21 Score=28.69 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=17.1
Q ss_pred hHHHHHHHhcCCCCcccccc
Q 043939 88 WAPFLLLHLGGPDTITAFAL 107 (227)
Q Consensus 88 WApfLLlHLGGpDtITAysl 107 (227)
=|..||++|||.++||+-.+
T Consensus 6 vaAYlL~~lgG~~~pTaddI 25 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEV 25 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHH
Confidence 36789999999999998665
No 8
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=31.68 E-value=3.1e+02 Score=25.28 Aligned_cols=78 Identities=10% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHcCcccCCCchhHHHHHHHHHhhhhHHHHHHHHHHhhccCCCccccccchhhhhHHHHH
Q 043939 14 DNWNIRGVILFSLSLQTVLILFAPLRKGTGNKLIISVIWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWAPFLL 93 (227)
Q Consensus 14 ~~W~ir~LVllSl~lq~~L~~~g~~Rrr~~~~~lr~~lWlAYllad~va~YaLG~Ls~~~~~~~~~~~~~L~afWApfLL 93 (227)
-|+.-|...-+++++-.++.+--+.+.++.+...++++=+.-..+.+...-..+.+.... .=+...+.|.|-++
T Consensus 264 ~El~~Rla~Pl~~l~l~llavpl~~~~~R~g~~~~i~~~i~~~~~y~~l~~~~~~l~~~g------~lpp~la~Wlp~i~ 337 (366)
T PRK15120 264 AELHWRLTLVFSVFIMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGGKG------KLDPMIWMWAVNLI 337 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHCC------CCChHHHHHHHHHH
Confidence 366666777777777776666555554444444455444333333333333334443321 12346789998877
Q ss_pred HHhc
Q 043939 94 LHLG 97 (227)
Q Consensus 94 lHLG 97 (227)
.-..
T Consensus 338 ~~~~ 341 (366)
T PRK15120 338 YLAL 341 (366)
T ss_pred HHHH
Confidence 6544
No 9
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=30.06 E-value=37 Score=21.70 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.8
Q ss_pred HHHHHHhcCCCCcccc
Q 043939 90 PFLLLHLGGPDTITAF 105 (227)
Q Consensus 90 pfLLlHLGGpDtITAy 105 (227)
--++-++||.+||+..
T Consensus 2 ~~il~~lGG~~NI~~v 17 (35)
T PF00367_consen 2 KQILEALGGKENIKSV 17 (35)
T ss_dssp HHHHHHCTTCCCEEEE
T ss_pred hHHHHHhCCHHHHHHH
Confidence 3467899999999864
No 10
>COG3336 Predicted membrane protein [Function unknown]
Probab=29.19 E-value=90 Score=29.29 Aligned_cols=84 Identities=23% Similarity=0.246 Sum_probs=45.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHcCcccC-CCch--hHHHHHHHHHhhhhHHH----HHHHHHHhhccCCCccccccchhh
Q 043939 14 DNWNIRGVILFSLSLQTVLILFAPLRKG-TGNK--LIISVIWSAYLLADWAA----NFAVGLIAENAKDTSEKKHKELLA 86 (227)
Q Consensus 14 ~~W~ir~LVllSl~lq~~L~~~g~~Rrr-~~~~--~lr~~lWlAYllad~va----~YaLG~Ls~~~~~~~~~~~~~L~a 86 (227)
--|+.+.+..+-...-....+.+..|.| +.+. ..|.+.|+.=.++=..| .++.|+..-+- .=.++.+..
T Consensus 11 ~~w~~~l~l~l~~i~~~~~y~~~~~r~rr~g~~wp~~r~~~~~lG~val~~a~~Spv~~~g~~mfs~----HMa~hm~L~ 86 (299)
T COG3336 11 TMWRFDLLLGLLGIVLLYFYIAGRVRSRREGISWPLGRVILWLLGCVALYGAVGSPVRAYGHAMFSL----HMAEHMLLM 86 (299)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHHhCCchhhhccccHHH----HHHHHHHHH
Confidence 3577776666655555555555554433 3333 57888886544443332 23333322210 113566777
Q ss_pred hhHHHHHHHhcCCCCc
Q 043939 87 FWAPFLLLHLGGPDTI 102 (227)
Q Consensus 87 fWApfLLlHLGGpDtI 102 (227)
.=||-||+ ||+|=+.
T Consensus 87 mvappLlV-Lg~P~~l 101 (299)
T COG3336 87 MVAPPLLV-LGAPVTL 101 (299)
T ss_pred HHHHHHHH-HcchHHH
Confidence 77886654 9999874
No 11
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=26.46 E-value=5e+02 Score=23.66 Aligned_cols=77 Identities=10% Similarity=-0.066 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHcCcc-cCCCchhHHHHHHHHHhhhhHHHHHHHHHHhhccCCCccccccchhhhhHHHHH
Q 043939 15 NWNIRGVILFSLSLQTVLILFAPLR-KGTGNKLIISVIWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWAPFLL 93 (227)
Q Consensus 15 ~W~ir~LVllSl~lq~~L~~~g~~R-rr~~~~~lr~~lWlAYllad~va~YaLG~Ls~~~~~~~~~~~~~L~afWApfLL 93 (227)
|+.-|...=+++..-.++.+.-..+ +|+.+...++.+=++-..+.++..-..+.+.... .=+...+.|+|.++
T Consensus 270 ~l~~r~a~Pl~~~~~~lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~g------~l~P~laaw~P~ii 343 (356)
T PRK15071 270 AMWRKIFQPLSVAVMMLMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLVY------GIPPIIGALLPSLL 343 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc------CccHHHHHHHHHHH
Confidence 4444555555555444444322222 2333323333333333333444333444444431 12246789999887
Q ss_pred HHhc
Q 043939 94 LHLG 97 (227)
Q Consensus 94 lHLG 97 (227)
.-+.
T Consensus 344 f~~~ 347 (356)
T PRK15071 344 FLGI 347 (356)
T ss_pred HHHH
Confidence 6443
No 12
>PF09622 DUF2391: Putative integral membrane protein (DUF2391); InterPro: IPR024464 Members of this protein family are found in archaea and bacteria. Their function is unknown.
Probab=26.32 E-value=2.6e+02 Score=25.74 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=61.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHcCcccCCCchhHHHH--HHHHHhhhhHHHHHHHHHHhhccCCCccccc--cchhhhhHH
Q 043939 15 NWNIRGVILFSLSLQTVLILFAPLRKGTGNKLIISV--IWSAYLLADWAANFAVGLIAENAKDTSEKKH--KELLAFWAP 90 (227)
Q Consensus 15 ~W~ir~LVllSl~lq~~L~~~g~~Rrr~~~~~lr~~--lWlAYllad~va~YaLG~Ls~~~~~~~~~~~--~~L~afWAp 90 (227)
.|++=.++.+++.+-+++.-.+++||++ .+...+ .=.||..+-.+++..|-.+..-.-+++ +.+ ..+..-+.|
T Consensus 32 ~~~ll~~l~l~~~~l~~l~~~~gFr~~~--~~~~~~~d~v~A~~ig~v~a~~~L~~l~~l~~~~~-~~e~lgkiiv~~vP 108 (267)
T PF09622_consen 32 PPRLLLLLALTVLLLVLLTRQSGFRKRR--RWRDAVRDAVEALAIGAVVAAAVLTLLGKLTLDTP-PREALGKIIVQSVP 108 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-HHHHhHhheeeEec
Confidence 7888888889999999999999999988 222211 113444444444444433333221111 111 123333444
Q ss_pred HH------HHHhcCCCCccccccCcchHHHHHHHHHHHHhhhhhheeee
Q 043939 91 FL------LLHLGGPDTITAFALEDNELWLRHLFGLIFQAVAAGYIFLL 133 (227)
Q Consensus 91 fL------LlHLGGpDtITAyslEDNelW~Rhll~l~~Qv~~a~Yv~~~ 133 (227)
+= =..|||++.=..=+-+.++.+.-.+-.+..|+.+++.+=+.
T Consensus 109 ~siGa~la~~~L~~~~~~~~~~~~~~~~~~~~~~Dl~q~~vGA~~lA~p 157 (267)
T PF09622_consen 109 ASIGAALARSQLGGDSDEEEEEEEEDKPERGYLADLGQMIVGALFLAFP 157 (267)
T ss_pred HHHHHHHHHHHcCCCCCcccccccccccccccHHHHHHHHHHHHHHhcC
Confidence 43 24577765432222222244444566677777777755433
No 13
>PF09773 Meckelin: Meckelin (Transmembrane protein 67); InterPro: IPR019170 Meckelin is a 995-amino acid seven-transmembrane receptor protein of unknown function []. Members of this family are thought to be related to the ciliary basal body. Defects result in Meckel syndrome type 3, [MIM:607361], an autosomal recessive disorder characterised by a combination of renal cysts and variably associated features including developmental anomalies of the central nervous system (typically encephalocele), hepatic ductal dysplasia and cysts, and polydactyly. Joubert syndrome type 6 [MIM:610688] is also a manifestation of certain mutations; it is an autosomal recessive congenital malformation of the cerebellar vermis and brainstem with abnormalities of axonal decussation (crossing in the brain) affecting the corticospinal tract and superior cerebellar peduncles. Individuals with Joubert syndrome have motor and behavioural abnormalities, including an inability to walk due to severe clumsiness and 'mirror' movements, and cognitive and behavioural disturbances [, ].
Probab=25.37 E-value=2e+02 Score=30.47 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHcCcccCCCch------hHHHHHHHHHhhhhHHHHHHHHHHh
Q 043939 10 KKIWDNWNIRGVILFSLSLQTVLILFAPLRKGTGNK------LIISVIWSAYLLADWAANFAVGLIA 70 (227)
Q Consensus 10 ~~~W~~W~ir~LVllSl~lq~~L~~~g~~Rrr~~~~------~lr~~lWlAYllad~va~YaLG~Ls 70 (227)
.+.|..++|=.-|++++++-..++=+.+.+||.... .+++++-++--+|+....+++|.-.
T Consensus 357 ~~f~~~~~I~l~Vl~~La~~~al~rt~~w~RR~~~~~id~~~l~~fl~~~~~~~a~~ff~v~~~~s~ 423 (853)
T PF09773_consen 357 SEFWQVLEIALIVLCVLAFLYALFRTYSWRRRNGSEMIDGQTLLKFLVYLCGNLANVFFIVTFGFSL 423 (853)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999888888888877754 3567777777788888777776543
No 14
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=22.26 E-value=5.7e+02 Score=22.88 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=35.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHcCcccCCCchhHHHHHHHHHhhhhHHHHHHHHHHhhccCCCccccccchhhhhHH
Q 043939 11 KIWDNWNIRGVILFSLSLQTVLILFAPLRKGTGNKLIISVIWSAYLLADWAANFAVGLIAENAKDTSEKKHKELLAFWAP 90 (227)
Q Consensus 11 ~~W~~W~ir~LVllSl~lq~~L~~~g~~Rrr~~~~~lr~~lWlAYllad~va~YaLG~Ls~~~~~~~~~~~~~L~afWAp 90 (227)
+..-|+-=|...-+++++-.++.+.=+.|.++.+....++.=+.-....+........|... ..-+...+.|.|
T Consensus 267 ~~~~~l~~R~~~p~~~l~~~lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~------~~l~p~~a~w~p 340 (354)
T PF03739_consen 267 KYETELHKRIALPLSCLILVLLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGEN------GNLPPFIAAWLP 340 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHc------CCccHHHHHHHH
Confidence 34445555666666666655555544444333333322332222222233333333333332 112345788888
Q ss_pred HHHH
Q 043939 91 FLLL 94 (227)
Q Consensus 91 fLLl 94 (227)
.++.
T Consensus 341 ~ii~ 344 (354)
T PF03739_consen 341 NIIF 344 (354)
T ss_pred HHHH
Confidence 7754
No 15
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=22.15 E-value=55 Score=30.28 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHcCccc-CCCchhH
Q 043939 13 WDNWNIRGVILFSLSLQTVLILFAPLRK-GTGNKLI 47 (227)
Q Consensus 13 W~~W~ir~LVllSl~lq~~L~~~g~~Rr-r~~~~~l 47 (227)
|++|.+|+++++-+++-++..+.|..+- +.+..|+
T Consensus 1 ~~~~~~E~~~l~~l~~y~~~y~~G~~~N~~~A~~w~ 36 (321)
T PF07946_consen 1 WYNFYLEIIFLAFLLLYVVNYFIGKSKNRRIAKAWF 36 (321)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999998888888888877776652 3334444
No 16
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=20.09 E-value=4.8e+02 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=12.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHhh
Q 043939 50 VIWSAYLLADWAANFAVGLIAE 71 (227)
Q Consensus 50 ~lWlAYllad~va~YaLG~Ls~ 71 (227)
..++++.+.-.+.+++.+.+..
T Consensus 90 ~~ll~~v~~~~l~~~~~~~~~~ 111 (149)
T PF10754_consen 90 IWLLISVLFIALDAFAFSYIFP 111 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3344566656667777655554
Done!