Query 043939
Match_columns 227
No_of_seqs 153 out of 329
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:53:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 40.1 11 0.00036 29.3 1.4 19 89-107 5-23 (113)
2 2lbf_B 60S acidic ribosomal pr 34.1 18 0.00061 25.7 1.7 19 89-107 6-24 (70)
3 3izc_v 60S acidic ribosomal pr 29.0 20 0.00068 27.4 1.3 18 89-107 5-22 (106)
4 3bp3_A Glucose-specific phosph 17.3 42 0.0014 24.0 1.0 17 89-105 7-23 (82)
5 1iba_A Glucose permease; phosp 15.1 64 0.0022 24.2 1.6 18 89-106 16-33 (101)
6 3ggz_E Vacuolar protein-sortin 11.2 94 0.0032 18.6 1.1 10 154-163 19-28 (29)
7 3dt5_A Uncharacterized protein 11.0 1.3E+02 0.0045 23.0 2.2 24 96-119 77-100 (135)
8 3dwa_A SUBB, subtilase cytotox 10.7 54 0.0018 25.9 -0.1 26 101-126 41-66 (126)
9 2h1v_A Ferrochelatase; rossman 8.9 43 0.0015 29.3 -1.4 12 92-103 9-20 (310)
10 2wsw_A BCCT family betaine/car 8.9 1.8E+02 0.0062 27.7 2.8 42 56-98 426-473 (509)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=40.06 E-value=11 Score=29.28 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=16.6
Q ss_pred HHHHHHHhcCCCCcccccc
Q 043939 89 APFLLLHLGGPDTITAFAL 107 (227)
Q Consensus 89 ApfLLlHLGGpDtITAysl 107 (227)
|..||+||||..+||+-.|
T Consensus 5 aAylL~~l~G~~~ptad~I 23 (113)
T 3iz5_v 5 AAYLLAYLSGNASPSAEDL 23 (113)
T ss_dssp HHHHHHHHHTCCCCTTTTH
T ss_pred HHHHHHHHcCCCCCCHHHH
Confidence 6789999999999998765
No 2
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=34.11 E-value=18 Score=25.69 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCCCcccccc
Q 043939 89 APFLLLHLGGPDTITAFAL 107 (227)
Q Consensus 89 ApfLLlHLGGpDtITAysl 107 (227)
+..||+|+||..+||+-.+
T Consensus 6 yA~Lll~~~g~~~~ta~~I 24 (70)
T 2lbf_B 6 ASYLLAALGGNSSPSAKDI 24 (70)
T ss_dssp HHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHhCCCCCCCHHHH
Confidence 5679999999999997554
No 3
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=28.96 E-value=20 Score=27.36 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCCcccccc
Q 043939 89 APFLLLHLGGPDTITAFAL 107 (227)
Q Consensus 89 ApfLLlHLGGpDtITAysl 107 (227)
|..||+|+||.+ ||+-.|
T Consensus 5 aAyLL~~~gG~e-~tad~I 22 (106)
T 3izc_v 5 AAYLLLNAAGNT-PDATKI 22 (106)
T ss_dssp HHHHHHHHHTCC-CTTTTH
T ss_pred HHHHHHHhcCCC-CCHHHH
Confidence 567999999999 998765
No 4
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=17.32 E-value=42 Score=24.00 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCCcccc
Q 043939 89 APFLLLHLGGPDTITAF 105 (227)
Q Consensus 89 ApfLLlHLGGpDtITAy 105 (227)
|.-++-++||.|||...
T Consensus 7 a~~ii~~lGG~~NI~~v 23 (82)
T 3bp3_A 7 APALVAAFGGKENITNL 23 (82)
T ss_dssp HHHHHHHTTCGGGEEEE
T ss_pred HHHHHHHhCCHHHHhhh
Confidence 55688999999999864
No 5
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=15.11 E-value=64 Score=24.20 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCCccccc
Q 043939 89 APFLLLHLGGPDTITAFA 106 (227)
Q Consensus 89 ApfLLlHLGGpDtITAys 106 (227)
|.-++-.+||.|||+...
T Consensus 16 A~~Ii~alGG~eNI~~v~ 33 (101)
T 1iba_A 16 APALVAAFGGKENITNLD 33 (101)
T ss_dssp HHHHTHHHHTCTTCSBCC
T ss_pred HHHHHHHhCCHHHHhhhc
Confidence 566889999999998743
No 6
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=11.20 E-value=94 Score=18.58 Aligned_cols=10 Identities=50% Similarity=0.544 Sum_probs=7.8
Q ss_pred HhhhhHHHHh
Q 043939 154 KYVERTRALF 163 (227)
Q Consensus 154 Ky~ER~~aL~ 163 (227)
|.+||..|||
T Consensus 19 kLAqRLRALR 28 (29)
T 3ggz_E 19 KLAQRLRALR 28 (29)
T ss_pred HHHHHHHHHc
Confidence 6778888887
No 7
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=10.95 E-value=1.3e+02 Score=23.01 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=20.6
Q ss_pred hcCCCCccccccCcchHHHHHHHH
Q 043939 96 LGGPDTITAFALEDNELWLRHLFG 119 (227)
Q Consensus 96 LGGpDtITAyslEDNelW~Rhll~ 119 (227)
.+|.-+-|-|+-||-|+|+..+=-
T Consensus 77 iagsanwtfyakedfeqwkealdv 100 (135)
T 3dt5_A 77 IAGSANWTFYAKEDFEQWKEALDV 100 (135)
T ss_dssp CTTCSSEEESSHHHHHHHHHHHHH
T ss_pred hccccceeEEeHhhHHHHHHHHHH
Confidence 578889999999999999987643
No 8
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=10.70 E-value=54 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=23.1
Q ss_pred CccccccCcchHHHHHHHHHHHHhhh
Q 043939 101 TITAFALEDNELWLRHLFGLIFQAVA 126 (227)
Q Consensus 101 tITAyslEDNelW~Rhll~l~~Qv~~ 126 (227)
+++|+++.|+.-|++++=+++-|+-.
T Consensus 41 ~v~aCaV~~~s~~~~~Fd~~~~~A~Y 66 (126)
T 3dwa_A 41 SISACSMKNSSVWGASFSTLYNQALY 66 (126)
T ss_dssp EEEEEEETTCSSSGGGHHHHHHHHHH
T ss_pred ceeEEEEeccccccccHHHHHHHhHh
Confidence 69999999999999999988888753
No 9
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=8.95 E-value=43 Score=29.29 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=8.2
Q ss_pred HHHHhcCCCCcc
Q 043939 92 LLLHLGGPDTIT 103 (227)
Q Consensus 92 LLlHLGGpDtIT 103 (227)
||+.+||||+.+
T Consensus 9 Ll~n~G~P~~~~ 20 (310)
T 2h1v_A 9 LVMAYGTPYKEE 20 (310)
T ss_dssp EEEECCCCSSGG
T ss_pred EEEeCCCCCChH
Confidence 556677777764
No 10
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=8.85 E-value=1.8e+02 Score=27.69 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHhhccCCCccccccchhhhhHHHH------HHHhcC
Q 043939 56 LLADWAANFAVGLIAENAKDTSEKKHKELLAFWAPFL------LLHLGG 98 (227)
Q Consensus 56 llad~va~YaLG~Ls~~~~~~~~~~~~~L~afWApfL------LlHLGG 98 (227)
+.+| -++|+++.++++..+.+.++......||+..+ |+-.||
T Consensus 426 TSaD-S~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~gg 473 (509)
T 2wsw_A 426 TLIN-ACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGG 473 (509)
T ss_dssp HHHH-HHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred Hccc-HHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhcc
Confidence 4455 36799999998642111123445678999887 666666
Done!