Query 043939
Match_columns 227
No_of_seqs 153 out of 329
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 16:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bp8c1 d.95.1.1 (C:13-87) Glu 40.6 5.8 0.00042 26.6 1.8 17 89-105 2-18 (75)
2 d1o65a_ b.58.1.2 (A:) Hypothet 12.7 12 0.00088 30.1 -1.4 25 94-118 56-81 (233)
3 d2r6gf2 f.58.1.1 (F:261-504) M 7.0 3.4E+02 0.025 19.9 5.5 48 24-71 34-81 (244)
4 d1qs0b2 c.48.1.2 (B:206-339) 2 5.9 49 0.0035 23.6 -0.4 16 95-110 101-116 (134)
5 d1c99a_ f.17.1.1 (A:) F1F0 ATP 5.5 2.6E+02 0.019 18.3 3.4 32 37-68 39-70 (79)
6 d1xhba2 c.68.1.17 (A:95-422) P 5.3 1.6E+02 0.011 22.4 2.4 26 92-117 208-234 (328)
7 d1tdja3 d.58.18.2 (A:424-514) 4.8 1.3E+02 0.0091 20.3 1.3 15 93-107 28-42 (91)
8 d1qu6a1 d.50.1.1 (A:1-90) dsRN 4.7 4E+02 0.029 17.0 4.0 30 174-206 6-35 (90)
9 d2hk6a1 c.92.1.1 (A:2-310) Fer 4.4 48 0.0035 27.0 -1.5 11 92-102 8-18 (309)
10 d2ijqa1 a.246.2.1 (A:14-158) H 4.4 1.7E+02 0.012 21.3 1.8 16 115-130 54-69 (145)
No 1
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}
Probab=40.62 E-value=5.8 Score=26.64 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCCCcccc
Q 043939 89 APFLLLHLGGPDTITAF 105 (227)
Q Consensus 89 ApfLLlHLGGpDtITAy 105 (227)
|+-++-++||.|||+..
T Consensus 2 A~~ii~~lGG~~NI~~~ 18 (75)
T d3bp8c1 2 APALVAAFGGKENITNL 18 (75)
T ss_dssp HHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHhCCHHHHHHH
Confidence 56678899999999875
No 2
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]}
Probab=12.75 E-value=12 Score=30.10 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.1
Q ss_pred HHhcCCCC-ccccccCcchHHHHHHH
Q 043939 94 LHLGGPDT-ITAFALEDNELWLRHLF 118 (227)
Q Consensus 94 lHLGGpDt-ITAyslEDNelW~Rhll 118 (227)
-|.||||. ++.|+.|+-+.|.+.+-
T Consensus 56 ~~HGG~dkAV~~~~~e~y~~w~~~l~ 81 (233)
T d1o65a_ 56 KVHGGPDRALCHYPREHYLYWAREFP 81 (233)
T ss_dssp -CCCGGGGSEEEEETHHHHHHHHHCG
T ss_pred cCCCCcCCEEEEeCHHHHHHHHHHhc
Confidence 46799985 99999999999988763
No 3
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.05 E-value=3.4e+02 Score=19.85 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCcccCCCchhHHHHHHHHHhhhhHHHHHHHHHHhh
Q 043939 24 FSLSLQTVLILFAPLRKGTGNKLIISVIWSAYLLADWAANFAVGLIAE 71 (227)
Q Consensus 24 lSl~lq~~L~~~g~~Rrr~~~~~lr~~lWlAYllad~va~YaLG~Ls~ 71 (227)
++..+=+.+...-.+|+...++++|.++-+.+...-.++.+....+..
T Consensus 34 ~~~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~ 81 (244)
T d2r6gf2 34 LTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFN 81 (244)
T ss_dssp HHHHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444444455567777888999999999999887776666655554
No 4
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]}
Probab=5.91 E-value=49 Score=23.63 Aligned_cols=16 Identities=31% Similarity=0.100 Sum_probs=14.0
Q ss_pred HhcCCCCccccccCcc
Q 043939 95 HLGGPDTITAFALEDN 110 (227)
Q Consensus 95 HLGGpDtITAyslEDN 110 (227)
++|+||+.+.|+.|++
T Consensus 101 ri~~~d~p~p~~~e~~ 116 (134)
T d1qs0b2 101 RVTGWDTPYPHAQEWA 116 (134)
T ss_dssp EEECCSSCCCSTTHHH
T ss_pred EECCCCcCCCCChHHH
Confidence 6899999999998765
No 5
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=5.54 E-value=2.6e+02 Score=18.30 Aligned_cols=32 Identities=25% Similarity=0.195 Sum_probs=27.1
Q ss_pred CcccCCCchhHHHHHHHHHhhhhHHHHHHHHH
Q 043939 37 PLRKGTGNKLIISVIWSAYLLADWAANFAVGL 68 (227)
Q Consensus 37 ~~Rrr~~~~~lr~~lWlAYllad~va~YaLG~ 68 (227)
--|+-...+-++....+.--+.|+++.|+++.
T Consensus 39 ~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvi 70 (79)
T d1c99a_ 39 AARQPDLIPLLRTQFFIVMGLVDAIPMIAVGL 70 (79)
T ss_dssp HHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777778888899999999999999999864
No 6
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.28 E-value=1.6e+02 Score=22.43 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.3
Q ss_pred HHHHhcCCCC-ccccccCcchHHHHHH
Q 043939 92 LLLHLGGPDT-ITAFALEDNELWLRHL 117 (227)
Q Consensus 92 LLlHLGGpDt-ITAyslEDNelW~Rhl 117 (227)
++..+||=|. +.-|.-||.+++.|-.
T Consensus 208 ~f~~vGgfDe~~~~~g~ED~Dl~~R~~ 234 (328)
T d1xhba2 208 YFQEIGTYDAGMDIWGGENLEISFRIW 234 (328)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHH
T ss_pred HHHHhCCCCCCCcCcCchHHHHHHHHH
Confidence 4567999887 5567789999988854
No 7
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.79 E-value=1.3e+02 Score=20.31 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=12.1
Q ss_pred HHHhcCCCCcccccc
Q 043939 93 LLHLGGPDTITAFAL 107 (227)
Q Consensus 93 LlHLGGpDtITAysl 107 (227)
+-++|..++||-|+=
T Consensus 28 l~~l~~~~nITeF~Y 42 (91)
T d1tdja3 28 LNTLGTYWNISLFHY 42 (91)
T ss_dssp HHHHCSCCCCCEEEC
T ss_pred HHHhCCCCcEEEEEE
Confidence 577888889998875
No 8
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.73 E-value=4e+02 Score=16.95 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=19.9
Q ss_pred ccCCCCCCCChHHHHHHHhhhhhcccccceeec
Q 043939 174 MLRKPDPGPNYAKFVETYVSNIRANIQTGISLV 206 (227)
Q Consensus 174 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 206 (227)
|..+++|| +|-....||-.+. ++.++...+
T Consensus 6 ~~~~~~~~-~y~s~LqE~~Qk~--~~~p~y~~~ 35 (90)
T d1qu6a1 6 MAGDLSAG-FFMEELNTYRQKQ--GVVLKYQEL 35 (90)
T ss_dssp SCCCSSSC-SHHHHHHHHHHHH--TCCCEEEEE
T ss_pred hccCCCCC-CHHHHHHHHHHHh--CCCCcEEEE
Confidence 45667777 9988888987654 455554433
No 9
>d2hk6a1 c.92.1.1 (A:2-310) Ferrochelatase {Bacillus subtilis [TaxId: 1423]}
Probab=4.45 E-value=48 Score=26.98 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=6.9
Q ss_pred HHHHhcCCCCc
Q 043939 92 LLLHLGGPDTI 102 (227)
Q Consensus 92 LLlHLGGpDtI 102 (227)
||+.+||||+.
T Consensus 8 LL~n~G~P~~~ 18 (309)
T d2hk6a1 8 LVMAYGTPYKE 18 (309)
T ss_dssp EEEECCCCSSG
T ss_pred EEEeCCCCCCH
Confidence 45667777653
No 10
>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037 {Haloarcula marismortui [TaxId: 2238]}
Probab=4.37 E-value=1.7e+02 Score=21.33 Aligned_cols=16 Identities=19% Similarity=0.276 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhhhhe
Q 043939 115 RHLFGLIFQAVAAGYI 130 (227)
Q Consensus 115 Rhll~l~~Qv~~a~Yv 130 (227)
|.+++=+.|++++.|-
T Consensus 54 r~~~QGLIQ~Aaa~~h 69 (145)
T d2ijqa1 54 SKFLHGMVQVAAGAYK 69 (145)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677778888777664
Done!