BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043940
         (123 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
 pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
           Shock Protein
          Length = 151

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 5/104 (4%)

Query: 1   PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
           P AHV   D+P +KK+EVK+EVE+  VL +SGER  +   K     +KW R ER+ GKF 
Sbjct: 52  PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFV 107

Query: 61  RQFKMPMSADLEHVKAHLENGALRIKVPELAEEKRRQPKVISIN 104
           R+F++   A +E VKA LENG L + VP+ AE K+ + K I I+
Sbjct: 108 RRFRLLEDAKVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQIS 150


>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
 pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
          Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
          Length = 101

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 59/91 (64%), Gaps = 4/91 (4%)

Query: 1  PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
          P AHV   D+P +KK+EVK+EVE+  VL +SGER  +   K     +KW R ER+ GKF 
Sbjct: 10 PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFV 65

Query: 61 RQFKMPMSADLEHVKAHLENGALRIKVPELA 91
          R+F++   A +E VKA LENG L + VP+ A
Sbjct: 66 RRFRLLEDAKVEEVKAGLENGVLTVTVPKAA 96


>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
 pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
          Flexibility In The Small Heat Shock Protein Hsp26
          Length = 93

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 1  PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
          P AHV   D+P +KK+EVK+EVE+  VL +SGER  +   K     +KW R ER+ GKF 
Sbjct: 9  PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDK----NDKWHRVERSSGKFV 64

Query: 61 RQFKMPMSADLEHVKAHLENGALRIKVP 88
          R+F++   A +E VKA LENG L + VP
Sbjct: 65 RRFRLLEDAKVEEVKAGLENGVLTVTVP 92


>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
          Length = 103

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 5  VIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFK 64
          V+  D+P +   ++++++++  +L + GERKS+       E E++ R ER +G F R+F 
Sbjct: 20 VLYADLPGIDPSQIEVQMDKG-ILSIRGERKSE----SSTETERFSRIERRYGSFHRRFA 74

Query: 65 MPMSADLEHVKAHLENGALRIKVP 88
          +P SAD + + A   NG L I++P
Sbjct: 75 LPDSADADGITAAGRNGVLEIRIP 98


>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
 pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas
          Axonopodis
          Length = 100

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 5  VIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFK 64
          V+  D+P +   ++++++++  +L + GERKS+       E E++ R ER +G F R+F 
Sbjct: 17 VLYADLPGIDPSQIEVQMDKG-ILSIRGERKSE----SSTETERFSRIERRYGSFHRRFA 71

Query: 65 MPMSADLEHVKAHLENGALRIKVP 88
          +P SAD + + A   NG L I++P
Sbjct: 72 LPDSADADGITAAGRNGVLEIRIP 95


>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
          Length = 102

 Score = 28.9 bits (63), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 6  IALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKM 65
          + LD+P +    + +  E+   L +SGER   ++           R+ER  G+F R+   
Sbjct: 20 LLLDVPGVDAGTLAL-AEDGGQLTVSGERPGTEHL---------LRSERPSGRFVRELAF 69

Query: 66 PMSADLEHVKAHLENGALRIKVPEL 90
          P         A L  G L ++  +L
Sbjct: 70 PEPVRPASGVASLAGGVLTVRFEKL 94


>pdb|3LS3|A Chain A, Padron0.9-On (Fluorescent State)
 pdb|3LS3|B Chain B, Padron0.9-On (Fluorescent State)
 pdb|3LS3|C Chain C, Padron0.9-On (Fluorescent State)
 pdb|3LS3|D Chain D, Padron0.9-On (Fluorescent State)
 pdb|3LSA|A Chain A, Padron0.9-Off (Non-Fluorescent State)
 pdb|3LSA|B Chain B, Padron0.9-Off (Non-Fluorescent State)
 pdb|3LSA|C Chain C, Padron0.9-Off (Non-Fluorescent State)
 pdb|3LSA|D Chain D, Padron0.9-Off (Non-Fluorescent State)
          Length = 235

 Score = 28.9 bits (63), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 11  PVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSAD 70
           PVM+K  VK E+   ++    G  KSD  Y   +EG    R +  F   ++  K+    D
Sbjct: 141 PVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSLEGGGHYRCD--FKTTYKAKKVVQLPD 198

Query: 71  LEHVKAHLE 79
              V  H+E
Sbjct: 199 YHSVDHHIE 207


>pdb|3ZUL|A Chain A, Padron On (Fluorescent) Icis Intermediate State
 pdb|3ZUL|B Chain B, Padron On (Fluorescent) Icis Intermediate State
 pdb|3ZUL|C Chain C, Padron On (Fluorescent) Icis Intermediate State
 pdb|3ZUL|D Chain D, Padron On (Fluorescent) Icis Intermediate State
 pdb|3ZUL|E Chain E, Padron On (Fluorescent) Icis Intermediate State
 pdb|3ZUL|F Chain F, Padron On (Fluorescent) Icis Intermediate State
          Length = 221

 Score = 28.5 bits (62), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 11  PVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSAD 70
           PVM+K  VK E+   ++    G  KSD  Y   +EG    R +  F   ++  K+    D
Sbjct: 127 PVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSLEGGGHYRCD--FKTTYKAKKVVQLPD 184

Query: 71  LEHVKAHLE 79
              V  H+E
Sbjct: 185 YHSVDHHIE 193


>pdb|3ZUJ|A Chain A, Padron On (Fluorescent) Abcis
 pdb|3ZUJ|B Chain B, Padron On (Fluorescent) Abcis
 pdb|3ZUJ|C Chain C, Padron On (Fluorescent) Abcis
 pdb|3ZUJ|D Chain D, Padron On (Fluorescent) Abcis
 pdb|3ZUJ|E Chain E, Padron On (Fluorescent) Abcis
 pdb|3ZUJ|F Chain F, Padron On (Fluorescent) Abcis
          Length = 214

 Score = 28.5 bits (62), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 11  PVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSAD 70
           PVM+K  VK E+   ++    G  KSD  Y   +EG    R +  F   ++  K+    D
Sbjct: 127 PVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSLEGGGHYRCD--FKTTYKAKKVVQLPD 184

Query: 71  LEHVKAHLE 79
              V  H+E
Sbjct: 185 YHSVDHHIE 193


>pdb|3ZUF|A Chain A, Padron Off (Non-Fluorescent) Btrans
 pdb|3ZUF|B Chain B, Padron Off (Non-Fluorescent) Btrans
 pdb|3ZUF|C Chain C, Padron Off (Non-Fluorescent) Btrans
 pdb|3ZUF|D Chain D, Padron Off (Non-Fluorescent) Btrans
 pdb|3ZUF|E Chain E, Padron Off (Non-Fluorescent) Btrans
 pdb|3ZUF|F Chain F, Padron Off (Non-Fluorescent) Btrans
          Length = 215

 Score = 28.5 bits (62), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 11  PVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSAD 70
           PVM+K  VK E+   ++    G  KSD  Y   +EG    R +  F   ++  K+    D
Sbjct: 127 PVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSLEGGGHYRCD--FKTTYKAKKVVQLPD 184

Query: 71  LEHVKAHLE 79
              V  H+E
Sbjct: 185 YHSVDHHIE 193


>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
 pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
          Length = 147

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 60  WRQFKMPMSADLEHVKAHLENGALRIKVP 88
           +R  K+P +   E+  A  ENG L + +P
Sbjct: 106 YRTIKLPATVKEENASAKFENGVLSVILP 134


>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
 pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
           Shock Protein Hsp16.5
          Length = 161

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 60  WRQFKMPMSADLEHVKAHLENGALRIKVP 88
           +R  K+P +   E+  A  ENG L + +P
Sbjct: 120 YRTIKLPATVKEENASAKFENGVLSVILP 148


>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From
           Human Ranbp2
          Length = 130

 Score = 26.6 bits (57), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 65  MPMSADLEHVKAHLENGALRIKVPELAEE 93
           M +++D     A LE  A + K PELAEE
Sbjct: 81  MWLASDFSDGDAKLEQLAAKFKTPELAEE 109


>pdb|3BBO|I Chain I, Homology Model For The Spinach Chloroplast 50s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
          Length = 223

 Score = 25.8 bits (55), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 3   AHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSD 37
           +H + + IP    D +K++VEEN  + +SG  KS+
Sbjct: 153 SHPVKMQIP----DSLKVKVEENTRITVSGYDKSE 183


>pdb|1OLP|A Chain A, Alpha Toxin From Clostridium Absonum
 pdb|1OLP|B Chain B, Alpha Toxin From Clostridium Absonum
 pdb|1OLP|C Chain C, Alpha Toxin From Clostridium Absonum
 pdb|1OLP|D Chain D, Alpha Toxin From Clostridium Absonum
          Length = 370

 Score = 25.4 bits (54), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 3   AHVIALDIPVMKKDEVKIEVEENRV-LRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
           A+V A+D P   K E   E  ++   L  +G    D +YK+ ++ + +    + + K+W
Sbjct: 138 ANVTAVDSPGHVKFETYAEERKDTYRLDTTGYNTDDAFYKDTLKNDNFNEWSKGYCKYW 196


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,745,703
Number of Sequences: 62578
Number of extensions: 151073
Number of successful extensions: 332
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 36
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)