Query 043940
Match_columns 123
No_of_seqs 123 out of 1163
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 1E-28 2.2E-33 172.2 12.6 101 1-111 42-142 (142)
2 PRK10743 heat shock protein Ib 99.9 3.7E-27 8E-32 163.6 12.2 94 1-104 44-137 (137)
3 cd06472 ACD_ScHsp26_like Alpha 99.9 3.3E-26 7.1E-31 148.7 11.4 85 1-89 8-92 (92)
4 COG0071 IbpA Molecular chapero 99.9 4.7E-26 1E-30 159.4 12.5 98 1-104 49-146 (146)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 9.6E-26 2.1E-30 148.3 12.4 97 1-104 6-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 3.5E-24 7.6E-29 139.2 10.7 85 1-89 9-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 7.3E-24 1.6E-28 137.4 11.3 81 1-89 10-90 (90)
8 cd06498 ACD_alphaB-crystallin_ 99.9 4.6E-24 9.9E-29 136.9 10.1 78 1-90 6-84 (84)
9 cd06497 ACD_alphaA-crystallin_ 99.9 4.5E-24 9.7E-29 137.5 10.1 77 1-89 9-86 (86)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 7.6E-24 1.7E-28 135.5 10.3 77 1-89 6-83 (83)
11 cd06481 ACD_HspB9_like Alpha c 99.9 2.1E-23 4.6E-28 134.6 10.2 81 1-89 6-87 (87)
12 cd06476 ACD_HspB2_like Alpha c 99.9 2.3E-23 4.9E-28 133.4 10.2 77 1-89 6-83 (83)
13 cd06479 ACD_HspB7_like Alpha c 99.9 7.1E-23 1.5E-27 130.5 9.3 74 1-89 7-81 (81)
14 cd06482 ACD_HspB10 Alpha cryst 99.9 1.1E-22 2.4E-27 131.2 9.9 80 1-89 7-87 (87)
15 cd06477 ACD_HspB3_Like Alpha c 99.9 5.7E-22 1.2E-26 126.9 10.4 76 1-88 6-82 (83)
16 cd06526 metazoan_ACD Alpha-cry 99.9 3E-22 6.4E-27 127.9 8.8 76 2-89 7-83 (83)
17 cd06475 ACD_HspB1_like Alpha c 99.9 7.9E-22 1.7E-26 127.0 10.0 76 1-88 9-85 (86)
18 cd06464 ACD_sHsps-like Alpha-c 99.9 2.9E-21 6.3E-26 122.7 11.1 83 1-89 6-88 (88)
19 cd06480 ACD_HspB8_like Alpha-c 99.8 8.7E-19 1.9E-23 113.9 9.7 76 1-88 14-90 (91)
20 KOG0710 Molecular chaperone (s 99.8 5.3E-19 1.2E-23 129.3 6.9 102 1-104 93-195 (196)
21 KOG3591 Alpha crystallins [Pos 99.7 4.3E-16 9.4E-21 111.9 12.1 94 1-107 71-165 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 2.2E-14 4.7E-19 87.9 9.5 76 1-89 5-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 6.2E-12 1.3E-16 78.6 9.2 67 1-92 5-71 (78)
24 cd06463 p23_like Proteins cont 99.1 1.5E-09 3.2E-14 67.6 9.5 72 1-92 5-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 5.9E-09 1.3E-13 74.9 8.9 67 3-93 103-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.7 1.4E-07 3E-12 59.3 8.2 72 1-92 6-77 (84)
27 PF08190 PIH1: pre-RNA process 98.5 8.3E-07 1.8E-11 68.7 8.7 65 1-88 260-327 (328)
28 PF04969 CS: CS domain; Inter 98.1 0.00013 2.7E-09 44.7 10.2 69 1-89 9-79 (79)
29 cd06489 p23_CS_hSgt1_like p23_ 97.9 0.00017 3.8E-09 45.4 8.8 73 1-93 6-78 (84)
30 cd06467 p23_NUDC_like p23_like 97.7 0.00045 9.9E-09 43.3 7.9 69 1-92 7-77 (85)
31 cd06465 p23_hB-ind1_like p23_l 97.6 0.0011 2.4E-08 43.7 9.3 69 2-91 10-78 (108)
32 cd06493 p23_NUDCD1_like p23_NU 97.5 0.0016 3.5E-08 41.2 8.7 69 1-92 7-77 (85)
33 cd06468 p23_CacyBP p23_like do 97.4 0.0039 8.5E-08 39.7 9.5 71 2-92 11-85 (92)
34 cd06488 p23_melusin_like p23_l 97.4 0.0038 8.3E-08 39.7 9.4 73 1-93 9-81 (87)
35 cd06494 p23_NUDCD2_like p23-li 96.3 0.06 1.3E-06 34.9 8.2 67 2-92 15-83 (93)
36 PLN03088 SGT1, suppressor of 96.1 0.049 1.1E-06 43.1 8.4 73 2-94 166-238 (356)
37 cd00237 p23 p23 binds heat sho 96.0 0.17 3.7E-06 33.5 9.6 69 2-92 11-79 (106)
38 KOG1309 Suppressor of G2 allel 95.0 0.11 2.5E-06 37.7 6.3 72 2-93 13-84 (196)
39 cd06492 p23_mNUDC_like p23-lik 94.7 0.49 1.1E-05 30.1 8.3 68 2-92 8-79 (87)
40 cd06490 p23_NCB5OR p23_like do 92.8 1.5 3.3E-05 27.6 9.7 71 1-93 7-81 (87)
41 cd06495 p23_NUDCD3_like p23-li 91.4 2.8 6.2E-05 27.5 8.6 70 2-91 14-86 (102)
42 PF14913 DPCD: DPCD protein fa 90.8 1 2.2E-05 33.1 5.9 33 59-91 132-170 (194)
43 PF13349 DUF4097: Domain of un 87.6 5.9 0.00013 27.1 7.9 62 17-86 86-147 (166)
44 cd06482 ACD_HspB10 Alpha cryst 85.7 2.2 4.8E-05 27.2 4.5 34 58-92 9-42 (87)
45 cd06477 ACD_HspB3_Like Alpha c 84.8 2.2 4.7E-05 27.0 4.1 32 59-91 9-40 (83)
46 cd06476 ACD_HspB2_like Alpha c 84.3 2.2 4.9E-05 26.8 4.0 33 58-91 8-40 (83)
47 cd06478 ACD_HspB4-5-6 Alpha-cr 83.8 2.8 6.2E-05 26.2 4.3 32 58-90 8-39 (83)
48 cd06497 ACD_alphaA-crystallin_ 83.8 2.7 5.8E-05 26.5 4.2 32 58-90 11-42 (86)
49 cd06471 ACD_LpsHSP_like Group 83.2 2.1 4.5E-05 27.0 3.6 29 3-32 63-91 (93)
50 PRK10743 heat shock protein Ib 81.9 7 0.00015 27.0 6.0 34 57-91 45-78 (137)
51 cd06470 ACD_IbpA-B_like Alpha- 81.4 4.6 9.9E-05 25.5 4.6 36 57-93 11-46 (90)
52 cd06479 ACD_HspB7_like Alpha c 81.3 3.7 8E-05 25.7 4.1 32 58-90 9-40 (81)
53 cd06526 metazoan_ACD Alpha-cry 79.5 5.3 0.00011 24.7 4.4 34 58-92 8-41 (83)
54 cd06498 ACD_alphaB-crystallin_ 79.1 4.7 0.0001 25.3 4.1 32 58-90 8-39 (84)
55 cd06475 ACD_HspB1_like Alpha c 78.2 5.5 0.00012 25.1 4.2 33 58-91 11-43 (86)
56 PF00011 HSP20: Hsp20/alpha cr 78.0 7.3 0.00016 24.7 4.9 33 57-90 7-39 (102)
57 cd06481 ACD_HspB9_like Alpha c 77.1 6 0.00013 24.9 4.2 33 59-92 9-41 (87)
58 cd06480 ACD_HspB8_like Alpha-c 76.5 7.1 0.00015 25.1 4.4 30 3-32 59-89 (91)
59 PRK11597 heat shock chaperone 76.4 12 0.00026 26.0 5.8 33 58-91 44-76 (142)
60 CHL00140 rpl6 ribosomal protei 74.2 15 0.00032 26.4 6.1 21 15-36 12-32 (178)
61 PRK05518 rpl6p 50S ribosomal p 74.1 18 0.00038 26.2 6.4 46 14-88 12-57 (180)
62 TIGR03653 arch_L6P archaeal ri 73.1 21 0.00047 25.5 6.6 45 15-88 7-51 (170)
63 PF04972 BON: BON domain; Int 73.0 8.1 0.00018 22.3 3.8 25 11-36 12-36 (64)
64 TIGR03654 L6_bact ribosomal pr 71.8 21 0.00045 25.6 6.3 21 15-36 11-31 (175)
65 cd06464 ACD_sHsps-like Alpha-c 71.8 12 0.00026 22.5 4.5 35 58-93 8-42 (88)
66 cd06472 ACD_ScHsp26_like Alpha 71.0 23 0.00049 22.2 6.5 33 58-91 10-43 (92)
67 PF08308 PEGA: PEGA domain; I 70.8 14 0.0003 21.9 4.5 34 2-35 35-68 (71)
68 PF00347 Ribosomal_L6: Ribosom 70.2 9 0.0002 23.0 3.7 46 15-88 2-47 (77)
69 PRK05498 rplF 50S ribosomal pr 67.8 25 0.00055 25.2 6.1 21 15-36 12-32 (178)
70 PF01954 DUF104: Protein of un 67.5 5.5 0.00012 23.7 2.2 32 72-105 3-34 (60)
71 PTZ00027 60S ribosomal protein 67.4 24 0.00052 25.8 5.9 52 10-88 8-59 (190)
72 COG0071 IbpA Molecular chapero 60.8 23 0.00049 24.3 4.6 33 58-91 51-83 (146)
73 cd06467 p23_NUDC_like p23_like 60.0 36 0.00078 20.5 5.3 31 58-88 9-39 (85)
74 COG0097 RplF Ribosomal protein 59.1 46 0.00099 24.2 6.0 23 13-36 10-32 (178)
75 PTZ00179 60S ribosomal protein 57.8 27 0.00058 25.4 4.7 21 15-36 12-32 (189)
76 KOG3413 Mitochondrial matrix p 57.5 5.9 0.00013 28.0 1.1 24 65-88 65-88 (156)
77 PF14814 UB2H: Bifunctional tr 51.2 35 0.00075 21.3 3.9 42 45-86 29-72 (85)
78 KOG1667 Zn2+-binding protein M 51.1 1.2E+02 0.0025 23.7 7.9 39 58-96 261-299 (320)
79 PF14730 DUF4468: Domain of un 50.6 61 0.0013 20.3 5.4 16 74-89 70-85 (91)
80 cd06494 p23_NUDCD2_like p23-li 49.4 67 0.0015 20.5 5.2 31 57-87 15-45 (93)
81 cd02178 GH16_beta_agarase Beta 49.0 38 0.00083 25.4 4.5 45 20-68 60-110 (258)
82 cd01759 PLAT_PL PLAT/LH2 domai 47.7 82 0.0018 21.0 8.3 44 58-107 45-89 (113)
83 KOG3591 Alpha crystallins [Pos 45.1 18 0.00039 26.0 2.1 30 7-36 120-150 (173)
84 PRK11198 LysM domain/BON super 44.6 35 0.00076 23.6 3.5 25 11-36 38-62 (147)
85 PF01491 Frataxin_Cyay: Fratax 43.3 31 0.00067 22.7 2.9 17 73-89 31-47 (109)
86 cd00503 Frataxin Frataxin is a 43.3 27 0.00058 23.0 2.5 28 72-107 28-55 (105)
87 PRK00446 cyaY frataxin-like pr 42.2 24 0.00053 23.2 2.2 16 74-89 29-44 (105)
88 PRK13726 conjugal transfer pil 41.8 55 0.0012 23.8 4.2 21 15-36 130-150 (188)
89 KOG3260 Calcyclin-binding prot 41.2 1.2E+02 0.0026 22.4 5.8 71 3-92 85-155 (224)
90 TIGR03421 FeS_CyaY iron donor 40.9 25 0.00054 23.0 2.1 16 74-89 27-42 (102)
91 PF13620 CarboxypepD_reg: Carb 39.8 33 0.00072 20.4 2.5 28 2-29 48-76 (82)
92 cd02175 GH16_lichenase lichena 39.2 1E+02 0.0022 22.3 5.3 49 15-68 31-80 (212)
93 PF07873 YabP: YabP family; I 38.7 27 0.00058 20.8 1.9 23 13-36 23-45 (66)
94 COG5091 SGT1 Suppressor of G2 38.6 26 0.00057 27.5 2.2 73 3-94 187-259 (368)
95 KOG2265 Nuclear distribution p 36.8 1.5E+02 0.0032 21.6 5.6 60 10-92 37-97 (179)
96 PF08845 SymE_toxin: Toxin Sym 36.5 62 0.0013 18.9 3.1 22 9-31 34-56 (57)
97 PF14014 DUF4230: Protein of u 35.4 30 0.00065 23.6 1.9 35 59-93 42-81 (157)
98 PF14545 DBB: Dof, BCAP, and B 35.3 1.3E+02 0.0029 21.0 5.1 34 2-35 49-85 (142)
99 TIGR03422 mito_frataxin fratax 34.0 33 0.00071 22.3 1.8 25 75-107 30-54 (97)
100 cd02177 GH16_kappa_carrageenas 32.7 1.2E+02 0.0027 23.2 5.1 48 19-67 45-103 (269)
101 PF05309 TraE: TraE protein; 31.8 86 0.0019 22.4 3.9 22 14-36 129-150 (187)
102 cd02180 GH16_fungal_KRE6_gluca 31.3 1.3E+02 0.0029 23.3 5.1 45 21-68 44-91 (295)
103 PLN02711 Probable galactinol-- 31.2 60 0.0013 28.8 3.4 53 49-104 721-776 (777)
104 KOG2853 Possible oxidoreductas 30.0 19 0.00041 29.4 0.2 25 54-78 132-156 (509)
105 TIGR02934 nifT_nitrog probable 29.9 60 0.0013 19.8 2.3 23 79-105 9-31 (67)
106 cd08023 GH16_laminarinase_like 29.6 2.2E+02 0.0048 20.6 6.6 53 13-68 35-91 (235)
107 TIGR02856 spore_yqfC sporulati 29.6 43 0.00093 21.1 1.8 23 13-36 41-63 (85)
108 cd02182 GH16_Strep_laminarinas 29.6 1.4E+02 0.0031 22.3 5.0 16 20-36 48-64 (259)
109 PRK10568 periplasmic protein; 29.5 92 0.002 22.7 3.8 26 10-36 72-97 (203)
110 TIGR02892 spore_yabP sporulati 28.5 49 0.0011 21.0 1.9 23 13-36 22-44 (85)
111 PF12080 GldM_C: GldM C-termin 27.3 89 0.0019 22.4 3.3 28 6-34 18-45 (181)
112 COG2880 Uncharacterized protei 26.8 5.9 0.00013 24.2 -2.4 12 74-85 7-18 (67)
113 cd00413 Glyco_hydrolase_16 gly 25.8 2.4E+02 0.0052 19.8 5.6 50 14-68 28-79 (210)
114 PF14864 Alkyl_sulf_C: Alkyl s 24.8 1.7E+02 0.0036 19.3 4.1 28 59-88 34-61 (125)
115 PRK12698 flgH flagellar basal 24.8 1.8E+02 0.004 21.7 4.7 37 24-73 148-184 (224)
116 TIGR02761 TraE_TIGR type IV co 24.1 2E+02 0.0044 20.5 4.7 22 14-36 129-150 (181)
117 PRK12700 flgH flagellar basal 23.6 2E+02 0.0043 21.7 4.7 37 24-73 155-191 (230)
118 PF10988 DUF2807: Protein of u 23.2 2.2E+02 0.0049 19.4 4.7 43 59-104 21-63 (181)
119 PF06988 NifT: NifT/FixU prote 23.0 78 0.0017 19.1 2.0 22 79-104 9-30 (64)
120 PF06964 Alpha-L-AF_C: Alpha-L 22.9 1.2E+02 0.0026 21.2 3.3 28 63-90 149-176 (177)
121 KOG4356 Uncharacterized conser 22.9 14 0.00031 29.1 -1.6 66 2-90 240-308 (310)
122 PF13715 DUF4480: Domain of un 22.9 92 0.002 18.8 2.4 21 4-24 46-66 (88)
123 cd06407 PB1_NLP A PB1 domain i 22.8 77 0.0017 19.8 2.0 18 73-90 2-19 (82)
124 PRK12407 flgH flagellar basal 22.7 2.1E+02 0.0046 21.4 4.6 13 24-36 145-157 (221)
125 PF14683 CBM-like: Polysacchar 22.7 76 0.0016 22.5 2.2 22 3-24 79-101 (167)
126 PRK12697 flgH flagellar basal 22.5 2.2E+02 0.0047 21.4 4.7 13 24-36 151-163 (226)
127 PRK12701 flgH flagellar basal 22.2 2.2E+02 0.0048 21.4 4.7 37 24-73 154-190 (230)
128 PF15525 DUF4652: Domain of un 21.8 3.4E+02 0.0074 20.1 7.1 60 23-88 121-180 (200)
129 cd07698 IgC_MHC_I_alpha3 Class 21.1 2.1E+02 0.0046 17.5 6.3 26 2-27 15-40 (93)
130 cd08024 GH16_CCF Coelomic cyto 20.9 4.2E+02 0.0091 20.8 7.3 31 5-36 16-54 (330)
131 PRK10568 periplasmic protein; 20.9 1.6E+02 0.0034 21.4 3.6 25 11-36 152-176 (203)
132 PF06045 Rhamnogal_lyase: Rham 20.7 1E+02 0.0022 22.9 2.5 21 72-92 14-34 (203)
133 PF06977 SdiA-regulated: SdiA- 20.7 3.8E+02 0.0082 20.2 8.7 66 8-86 15-81 (248)
134 PF10830 DUF2553: Protein of u 20.0 1.2E+02 0.0027 18.9 2.5 20 71-90 7-26 (76)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.96 E-value=1e-28 Score=172.16 Aligned_cols=101 Identities=23% Similarity=0.337 Sum_probs=89.5
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|.++||||+++||+|++++ +.|+|+|++.. ..++..|+++|+++|.|.|+|.||++||.+ +|+|+|
T Consensus 42 ~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~------~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n 112 (142)
T PRK11597 42 DNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ------PEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN 112 (142)
T ss_pred CCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc------ccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence 368999999999999999999999 99999999765 235678999999999999999999999998 699999
Q ss_pred CEEEEEEeccccccCCCCeEEEeeecCCCCC
Q 043940 81 GALRIKVPELAEEKRRQPKVISINEEPVGNS 111 (123)
Q Consensus 81 GvL~I~~PK~~~~~~~~~~~I~I~~~~~~~~ 111 (123)
|||+|+|||..++ ...+++|+|+..|+.++
T Consensus 113 GVL~I~lPK~~~~-~~~~rkI~I~~~~~~~~ 142 (142)
T PRK11597 113 GLLHIDLIRNEPE-AIAPQRIAISERPALNS 142 (142)
T ss_pred CEEEEEEeccCcc-ccCCcEEEECCccccCC
Confidence 9999999997443 34689999999988764
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.95 E-value=3.7e-27 Score=163.60 Aligned_cols=94 Identities=21% Similarity=0.358 Sum_probs=83.4
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|.++||||+++||+|++.+ +.|+|+|++.. + .++..|+++|+++|+|.|+|.||++||.++ |+|+|
T Consensus 44 ~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~----~--~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~d 114 (137)
T PRK10743 44 ENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHAD----E--QKERTYLYQGIAERNFERKFQLAENIHVRG--ANLVN 114 (137)
T ss_pred CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECc----c--ccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEeC
Confidence 478999999999999999999999 99999999766 2 245679999999999999999999999994 99999
Q ss_pred CEEEEEEeccccccCCCCeEEEee
Q 043940 81 GALRIKVPELAEEKRRQPKVISIN 104 (123)
Q Consensus 81 GvL~I~~PK~~~~~~~~~~~I~I~ 104 (123)
|||+|+|||..+. ...+|+|+|+
T Consensus 115 GVL~I~lPK~~~~-~~~~r~I~I~ 137 (137)
T PRK10743 115 GLLYIDLERVIPE-AKKPRRIEIN 137 (137)
T ss_pred CEEEEEEeCCCcc-ccCCeEEeeC
Confidence 9999999997443 3468999984
No 3
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.94 E-value=3.3e-26 Score=148.72 Aligned_cols=85 Identities=53% Similarity=0.948 Sum_probs=78.0
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|.++||||+++||+|++.+++.|+|+|++.. .....+..|+++|+.+|.|.|+|.||.+++.+.|+|+|+|
T Consensus 8 ~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~----~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~n 83 (92)
T cd06472 8 PEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKK----EEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLEN 83 (92)
T ss_pred CCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecc----cccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEEC
Confidence 579999999999999999999997468999999876 3344577899999999999999999999999999999999
Q ss_pred CEEEEEEec
Q 043940 81 GALRIKVPE 89 (123)
Q Consensus 81 GvL~I~~PK 89 (123)
|+|+|++||
T Consensus 84 GvL~I~lPK 92 (92)
T cd06472 84 GVLTVTVPK 92 (92)
T ss_pred CEEEEEecC
Confidence 999999997
No 4
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.7e-26 Score=159.35 Aligned_cols=98 Identities=35% Similarity=0.627 Sum_probs=89.7
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|+++||||+++||+|++.+ +.|+|+|++.. +...+...|+++++.+|.|.|+|.||..|+.+.++|+|+|
T Consensus 49 ~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~----~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~n 123 (146)
T COG0071 49 DDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREE----EEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKN 123 (146)
T ss_pred CCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecc----cccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeC
Confidence 478999999999999999999999 99999999987 4566788999999999999999999999999999999999
Q ss_pred CEEEEEEeccccccCCCCeEEEee
Q 043940 81 GALRIKVPELAEEKRRQPKVISIN 104 (123)
Q Consensus 81 GvL~I~~PK~~~~~~~~~~~I~I~ 104 (123)
|+|+|+|||..+.+ ..+++|.|+
T Consensus 124 GvL~I~lpk~~~~~-~~~~~i~I~ 146 (146)
T COG0071 124 GLLTVTLPKAEPEE-KKPKRIEIE 146 (146)
T ss_pred cEEEEEEecccccc-ccCceeecC
Confidence 99999999998763 457888774
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.94 E-value=9.6e-26 Score=148.29 Aligned_cols=97 Identities=37% Similarity=0.685 Sum_probs=81.0
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|.|.++||||.+++|+|++.+ +.|+|+|.+.. ...+..++..+++++.|.|+|.||.++|.++|+|.|+|
T Consensus 6 ~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~------~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~ 78 (102)
T PF00011_consen 6 EDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKE------EEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN 78 (102)
T ss_dssp SSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEG------EECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT
T ss_pred CCEEEEEEECCCCChHHEEEEEec-Cccceeceeee------eeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC
Confidence 579999999999999999999999 99999999984 34566788889999999999999999999999999999
Q ss_pred CEEEEEEeccccccCCCCeEEEee
Q 043940 81 GALRIKVPELAEEKRRQPKVISIN 104 (123)
Q Consensus 81 GvL~I~~PK~~~~~~~~~~~I~I~ 104 (123)
|+|+|++||....+...+++|+|+
T Consensus 79 GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 79 GVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp SEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CEEEEEEEccccccCCCCeEEEeC
Confidence 999999999998865678999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.92 E-value=3.5e-24 Score=139.18 Aligned_cols=85 Identities=32% Similarity=0.615 Sum_probs=75.7
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|.++||||+++||+|++.+ +.|+|+|++.... +....+..|+++|+.+|.|.|+|.|| +++.+.++|+|+|
T Consensus 9 ~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~--~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~d 84 (93)
T cd06471 9 DDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESK--DEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYEN 84 (93)
T ss_pred CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccc--ccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEEC
Confidence 579999999999999999999999 9999999998621 12233457999999999999999999 7999999999999
Q ss_pred CEEEEEEec
Q 043940 81 GALRIKVPE 89 (123)
Q Consensus 81 GvL~I~~PK 89 (123)
|+|+|++||
T Consensus 85 GvL~I~lPK 93 (93)
T cd06471 85 GVLKITLPK 93 (93)
T ss_pred CEEEEEEcC
Confidence 999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.91 E-value=7.3e-24 Score=137.36 Aligned_cols=81 Identities=26% Similarity=0.418 Sum_probs=74.3
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|.++|||+++++|+|.+.+ +.|+|+|++.. ... .+.+|+++|+.+|+|.|+|.||.++|.+ +|+|+|
T Consensus 10 ~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~----~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~~ 81 (90)
T cd06470 10 ENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKAD----EEN-EEREYLHRGIAKRAFERSFNLADHVKVK--GAELEN 81 (90)
T ss_pred CCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ccc-CCCcEEEEEEeceEEEEEEECCCCceEC--eeEEeC
Confidence 379999999999999999999999 99999999988 333 6778999999999999999999999875 899999
Q ss_pred CEEEEEEec
Q 043940 81 GALRIKVPE 89 (123)
Q Consensus 81 GvL~I~~PK 89 (123)
|+|+|+||+
T Consensus 82 GvL~I~l~~ 90 (90)
T cd06470 82 GLLTIDLER 90 (90)
T ss_pred CEEEEEEEC
Confidence 999999985
No 8
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.91 E-value=4.6e-24 Score=136.89 Aligned_cols=78 Identities=18% Similarity=0.431 Sum_probs=68.4
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe-
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE- 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~- 79 (123)
+++|.|.++||||+++||+|++.+ +.|+|+|++.. .. ++..|+++ .|.|+|.||.+||.++|+|+|+
T Consensus 6 ~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 6 KDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEE----RQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred CceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 579999999999999999999999 99999998765 22 33456654 4999999999999999999995
Q ss_pred CCEEEEEEecc
Q 043940 80 NGALRIKVPEL 90 (123)
Q Consensus 80 nGvL~I~~PK~ 90 (123)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 9
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=4.5e-24 Score=137.47 Aligned_cols=77 Identities=18% Similarity=0.453 Sum_probs=68.6
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE-e
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL-E 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~ 79 (123)
+++|.|.++||||+++||+|++.+ +.|+|+|++.. . ..+..|++++ |.|+|.||++||.++|+|+| +
T Consensus 9 ~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~~ 76 (86)
T cd06497 9 RDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSE----R--QDDHGYISRE-----FHRRYRLPSNVDQSAITCSLSA 76 (86)
T ss_pred CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcc----e--eCCCCEEEEE-----EEEEEECCCCCChHHeEEEeCC
Confidence 579999999999999999999999 99999998755 2 2344576655 99999999999999999999 8
Q ss_pred CCEEEEEEec
Q 043940 80 NGALRIKVPE 89 (123)
Q Consensus 80 nGvL~I~~PK 89 (123)
||+|+|++||
T Consensus 77 dGvL~I~~PK 86 (86)
T cd06497 77 DGMLTFSGPK 86 (86)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.91 E-value=7.6e-24 Score=135.53 Aligned_cols=77 Identities=19% Similarity=0.451 Sum_probs=67.9
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE-e
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL-E 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~ 79 (123)
+++|.|.++||||+++||+|++.+ +.|+|+|++.. . ..+..|++++ |.|+|.||.+||.++|+|+| +
T Consensus 6 ~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~--~~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~~ 73 (83)
T cd06478 6 KDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEE----R--QDEHGFISRE-----FHRRYRLPPGVDPAAITSSLSA 73 (83)
T ss_pred CceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEce----E--cCCCCEEEEE-----EEEEEECCCCcChHHeEEEECC
Confidence 579999999999999999999999 99999998755 1 1234566654 99999999999999999999 6
Q ss_pred CCEEEEEEec
Q 043940 80 NGALRIKVPE 89 (123)
Q Consensus 80 nGvL~I~~PK 89 (123)
||+|+|++||
T Consensus 74 dGvL~I~~PK 83 (83)
T cd06478 74 DGVLTISGPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 11
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.90 E-value=2.1e-23 Score=134.58 Aligned_cols=81 Identities=25% Similarity=0.471 Sum_probs=70.7
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE-e
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL-E 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~ 79 (123)
.++|.|.++||||+++||+|++.+ +.|+|+|++.. ....+...|.+ .+|+|.|+|.||.+||.+.|+|.| +
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~----~~~~~~~~~~~---~~~~F~R~~~LP~~Vd~~~i~A~~~~ 77 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREK----KNEDEKGSFSY---EYQEFVREAQLPEHVDPEAVTCSLSP 77 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEee----ecccCCCcEEE---EeeEEEEEEECCCCcChHHeEEEeCC
Confidence 368999999999999999999999 99999999876 23333344543 479999999999999999999999 9
Q ss_pred CCEEEEEEec
Q 043940 80 NGALRIKVPE 89 (123)
Q Consensus 80 nGvL~I~~PK 89 (123)
||+|+|++|+
T Consensus 78 dGvL~I~~P~ 87 (87)
T cd06481 78 SGHLHIRAPR 87 (87)
T ss_pred CceEEEEcCC
Confidence 9999999995
No 12
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.90 E-value=2.3e-23 Score=133.41 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=67.1
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe-
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE- 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~- 79 (123)
+++|.|.++||||+++||+|++.+ +.|+|+|++.. .. ....|++ +.|.|+|.||.+||.++|+|+|.
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~~-----~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQ----RM--DRHGFVS-----REFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----ee--cCCCEEE-----EEEEEEEECCCCCChhhEEEEecC
Confidence 579999999999999999999999 99999999865 11 2333544 44999999999999999999995
Q ss_pred CCEEEEEEec
Q 043940 80 NGALRIKVPE 89 (123)
Q Consensus 80 nGvL~I~~PK 89 (123)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=7.1e-23 Score=130.53 Aligned_cols=74 Identities=19% Similarity=0.395 Sum_probs=66.9
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE-e
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL-E 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~ 79 (123)
+++|.|.++||||+++||+|++.+ +.|+|+|+++. .. + ..+|+|.|+|.||.+||.+.|+|+| +
T Consensus 7 ~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~----~~---~-------~~~g~F~R~~~LP~~vd~e~v~A~l~~ 71 (81)
T cd06479 7 GDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLA----SD---G-------TVMNTFTHKCQLPEDVDPTSVSSSLGE 71 (81)
T ss_pred CCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----cC---C-------CEEEEEEEEEECCCCcCHHHeEEEecC
Confidence 579999999999999999999999 99999999876 11 1 2478899999999999999999997 9
Q ss_pred CCEEEEEEec
Q 043940 80 NGALRIKVPE 89 (123)
Q Consensus 80 nGvL~I~~PK 89 (123)
||+|+|++++
T Consensus 72 ~GvL~I~~~~ 81 (81)
T cd06479 72 DGTLTIKARR 81 (81)
T ss_pred CCEEEEEecC
Confidence 9999999985
No 14
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.89 E-value=1.1e-22 Score=131.18 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=69.5
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|.++||||+++||+|++.+ +.|+|+|++.. .....+ ..++++|+|.|+|.||.+||.++|+|+|+|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~----~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~ 77 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAEREN----RYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGL 77 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEec----ccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcC
Confidence 478999999999999999999999 99999999977 222111 237789999999999999999999999987
Q ss_pred C-EEEEEEec
Q 043940 81 G-ALRIKVPE 89 (123)
Q Consensus 81 G-vL~I~~PK 89 (123)
| +|+|.-|.
T Consensus 78 ~~~l~i~~~~ 87 (87)
T cd06482 78 GSVVKIETPC 87 (87)
T ss_pred CCEEEEeeCC
Confidence 6 99999874
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.88 E-value=5.7e-22 Score=126.88 Aligned_cols=76 Identities=21% Similarity=0.380 Sum_probs=66.0
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE-e
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL-E 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~ 79 (123)
+++|.|.++||||+++||+|++.+ +.|+|+|++.. .. .+..+.. ++|.|+|.||.+|+.+.|+|+| +
T Consensus 6 ~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~----~~--~~~~~~~-----r~F~R~~~LP~~Vd~~~v~A~~~~ 73 (83)
T cd06477 6 KPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGV----RM--DEHGFIS-----RSFTRQYQLPDGVEHKDLSAMLCH 73 (83)
T ss_pred CceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcc----cc--CCCCEEE-----EEEEEEEECCCCcchheEEEEEcC
Confidence 579999999999999999999999 99999999877 22 2233432 3799999999999999999998 8
Q ss_pred CCEEEEEEe
Q 043940 80 NGALRIKVP 88 (123)
Q Consensus 80 nGvL~I~~P 88 (123)
||+|+|..|
T Consensus 74 dGvL~I~~~ 82 (83)
T cd06477 74 DGILVVETK 82 (83)
T ss_pred CCEEEEEec
Confidence 999999976
No 16
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.88 E-value=3e-22 Score=127.85 Aligned_cols=76 Identities=25% Similarity=0.481 Sum_probs=67.1
Q ss_pred cEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC-
Q 043940 2 TAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN- 80 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n- 80 (123)
++|.|.++||||+++||+|++.+ +.|+|+|++... .. ... +.++.|.|+|.||.+||.+.++|+|.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~----~~--~~~-----~~~~~f~r~~~LP~~vd~~~i~A~~~~~ 74 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEER----ED--EHG-----YVSREFTRRYQLPEGVDPDSVTSSLSSD 74 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeee----cc--CCC-----EEEEEEEEEEECCCCCChHHeEEEeCCC
Confidence 48999999999999999999999 999999998872 21 122 345789999999999999999999998
Q ss_pred CEEEEEEec
Q 043940 81 GALRIKVPE 89 (123)
Q Consensus 81 GvL~I~~PK 89 (123)
|+|+|++||
T Consensus 75 GvL~I~~Pk 83 (83)
T cd06526 75 GVLTIEAPK 83 (83)
T ss_pred cEEEEEecC
Confidence 999999997
No 17
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=7.9e-22 Score=126.99 Aligned_cols=76 Identities=20% Similarity=0.452 Sum_probs=66.1
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe-
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE- 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~- 79 (123)
+++|.|.++||||++++|+|++.+ +.|+|+|++.. .. ....+. .++|.|+|.||.+||.++|+|.|.
T Consensus 9 ~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~----~~--~~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~~~ 76 (86)
T cd06475 9 ADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEE----KQ--DEHGFV-----SRCFTRKYTLPPGVDPTAVTSSLSP 76 (86)
T ss_pred CCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECc----Cc--CCCCEE-----EEEEEEEEECCCCCCHHHcEEEECC
Confidence 579999999999999999999999 99999999865 22 122333 347999999999999999999997
Q ss_pred CCEEEEEEe
Q 043940 80 NGALRIKVP 88 (123)
Q Consensus 80 nGvL~I~~P 88 (123)
||+|+|++|
T Consensus 77 dGvL~I~lP 85 (86)
T cd06475 77 DGILTVEAP 85 (86)
T ss_pred CCeEEEEec
Confidence 999999998
No 18
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=2.9e-21 Score=122.68 Aligned_cols=83 Identities=43% Similarity=0.777 Sum_probs=75.3
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+++|+|.++||||++++|+|++.+ +.|.|+|++... ... ...+...++.++.|.|+|.||..+|.+.++|.|.|
T Consensus 6 ~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~----~~~-~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~ 79 (88)
T cd06464 6 DDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEE----EEE-EENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN 79 (88)
T ss_pred CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecc----ccc-CCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC
Confidence 368999999999999999999999 999999999982 222 22778889999999999999999999999999999
Q ss_pred CEEEEEEec
Q 043940 81 GALRIKVPE 89 (123)
Q Consensus 81 GvL~I~~PK 89 (123)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 19
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.79 E-value=8.7e-19 Score=113.86 Aligned_cols=76 Identities=18% Similarity=0.355 Sum_probs=66.6
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe-
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE- 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~- 79 (123)
++.|.|.+++.||+++||+|++.+ +.|+|+|++.. .. . +..+. .++|.|+|.||.+||.+.|+|.|.
T Consensus 14 ~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~----~~-~-e~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 14 SEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEE----QQ-K-EGGIV-----SKNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECc----cc-C-CCCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence 468999999999999999999999 99999999887 22 2 22344 366999999999999999999997
Q ss_pred CCEEEEEEe
Q 043940 80 NGALRIKVP 88 (123)
Q Consensus 80 nGvL~I~~P 88 (123)
||+|+|.+|
T Consensus 82 dGvL~IeaP 90 (91)
T cd06480 82 EGLLIIEAP 90 (91)
T ss_pred CCeEEEEcC
Confidence 999999998
No 20
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.3e-19 Score=129.26 Aligned_cols=102 Identities=43% Similarity=0.834 Sum_probs=87.4
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
++.|.+.++|||+.+++|+|.++++++|+|+|++.... +.......|+..|+.+|.|.|.|.||++++.+.|+|.|+|
T Consensus 93 ~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~--e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~n 170 (196)
T KOG0710|consen 93 PDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEE--EESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEMEN 170 (196)
T ss_pred CCceEEEeeCCCCCchhceEEeccCcEEEEeccccccc--ccccCCccceeehhcccceEeeecCCccccHHHHHHHhhC
Confidence 57899999999999999999999955899999999831 1223667889999999999999999999999999999999
Q ss_pred CEEEEEEeccccc-cCCCCeEEEee
Q 043940 81 GALRIKVPELAEE-KRRQPKVISIN 104 (123)
Q Consensus 81 GvL~I~~PK~~~~-~~~~~~~I~I~ 104 (123)
|+|+|.+||.... +....+.|.|.
T Consensus 171 GVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 171 GVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred CeEEEEEecccccccCCccceeecc
Confidence 9999999999874 24456666664
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.3e-16 Score=111.88 Aligned_cols=94 Identities=20% Similarity=0.426 Sum_probs=81.5
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE-e
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL-E 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~-~ 79 (123)
.+.|.|.+|+..|.+++|.|.+.| +.|.|.|++.. ...+..+..+ +|.|+|.||.++|++.|++++ .
T Consensus 71 ~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHee------r~d~~G~v~R-----~F~R~y~LP~~vdp~~V~S~LS~ 138 (173)
T KOG3591|consen 71 KDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEE------KEDEHGYVSR-----SFVRKYLLPEDVDPTSVTSTLSS 138 (173)
T ss_pred CCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecc------ccCCCCeEEE-----EEEEEecCCCCCChhheEEeeCC
Confidence 368999999999999999999999 89999999888 2244555543 499999999999999999999 6
Q ss_pred CCEEEEEEeccccccCCCCeEEEeeecC
Q 043940 80 NGALRIKVPELAEEKRRQPKVISINEEP 107 (123)
Q Consensus 80 nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 107 (123)
||+|+|.+||....+. ..|.|+|+..+
T Consensus 139 dGvLtI~ap~~~~~~~-~er~ipI~~~~ 165 (173)
T KOG3591|consen 139 DGVLTIEAPKPPPKQD-NERSIPIEQVG 165 (173)
T ss_pred CceEEEEccCCCCcCc-cceEEeEeecC
Confidence 8999999999987643 58999999874
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.59 E-value=2.2e-14 Score=87.90 Aligned_cols=76 Identities=43% Similarity=0.793 Sum_probs=67.3
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
++.|.|.++|||+.+++|.|.+.+ +.|.|+|.+... .. .+...+.|.+.|.||..++.+.++|.|.+
T Consensus 5 ~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~----~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 5 DDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEE----EE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCC----Cc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 368999999999999999999999 999999997761 11 33445779999999999999999999999
Q ss_pred CEEEEEEec
Q 043940 81 GALRIKVPE 89 (123)
Q Consensus 81 GvL~I~~PK 89 (123)
|+|.|.+||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.38 E-value=6.2e-12 Score=78.56 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=60.8
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
++.+.|.+++||+++++++|++.+ +.|.|+| . .|.+.+.||..|+++..+|++.+
T Consensus 5 ~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~---~---------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 5 DEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF---P---------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CCEEEEEEEeCCCccccceEEEec-CEEEEcC---C---------------------CEEEEEeCcccccccccEEEEeC
Confidence 468999999999999999999999 8899876 1 17789999999999999999999
Q ss_pred CEEEEEEecccc
Q 043940 81 GALRIKVPELAE 92 (123)
Q Consensus 81 GvL~I~~PK~~~ 92 (123)
|.|.|+|+|..+
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999865
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.10 E-value=1.5e-09 Score=67.56 Aligned_cols=72 Identities=17% Similarity=0.169 Sum_probs=63.1
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
++.+.|.+.+||..++++.|.+.+ +.|.|++.... .+.|...+.|+..|+.+...+++.+
T Consensus 5 ~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 5 LDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG-------------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred ccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC-------------------CCceEEeeEccCccchhhcEEEEeC
Confidence 468899999999999999999999 99999976331 1237788999999999999999999
Q ss_pred CEEEEEEecccc
Q 043940 81 GALRIKVPELAE 92 (123)
Q Consensus 81 GvL~I~~PK~~~ 92 (123)
|.|.|+|+|..+
T Consensus 65 ~~l~i~L~K~~~ 76 (84)
T cd06463 65 RKIEITLKKKEP 76 (84)
T ss_pred CEEEEEEEECCC
Confidence 999999999875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.96 E-value=5.9e-09 Score=74.87 Aligned_cols=67 Identities=22% Similarity=0.482 Sum_probs=53.5
Q ss_pred EEEEEEEcCCCCCCC-eEEEEec-CcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 3 AHVIALDIPVMKKDE-VKIEVEE-NRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 3 ~~~i~~~lPG~~~ed-i~I~i~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
.++|.++|||++.++ |+|.+.. .+.|+|.. .. .|.+++.||.. +.+.++++|+|
T Consensus 103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~--~~---------------------~~~krv~L~~~-~~e~~~~t~nN 158 (177)
T PF05455_consen 103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRV--GE---------------------KYLKRVALPWP-DPEITSATFNN 158 (177)
T ss_pred cEEEEEeCCCCCcccceeeEeecCCceEEEec--CC---------------------ceEeeEecCCC-ccceeeEEEeC
Confidence 589999999999888 9999996 24566642 11 14578999966 78889999999
Q ss_pred CEEEEEEeccccc
Q 043940 81 GALRIKVPELAEE 93 (123)
Q Consensus 81 GvL~I~~PK~~~~ 93 (123)
|||.|++-+....
T Consensus 159 gILEIri~~~~~~ 171 (177)
T PF05455_consen 159 GILEIRIRRTEES 171 (177)
T ss_pred ceEEEEEeecCCC
Confidence 9999999987654
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.71 E-value=1.4e-07 Score=59.30 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=61.5
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
++.+.|.+.+||+.++++.|.+.+ +.|.|++.... .+.|...+.|+..|+++..++.+.+
T Consensus 6 ~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~~-------------------~~~~~~~~~L~~~I~~~~s~~~~~~ 65 (84)
T cd06466 6 DTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILPG-------------------GSEYQLELDLFGPIDPEQSKVSVLP 65 (84)
T ss_pred CCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECCC-------------------CCeEEEecccccccCchhcEEEEeC
Confidence 467899999999999999999999 89999865321 1236678899999999999999999
Q ss_pred CEEEEEEecccc
Q 043940 81 GALRIKVPELAE 92 (123)
Q Consensus 81 GvL~I~~PK~~~ 92 (123)
|.|.|+|.|...
T Consensus 66 ~~vei~L~K~~~ 77 (84)
T cd06466 66 TKVEITLKKAEP 77 (84)
T ss_pred eEEEEEEEcCCC
Confidence 999999999865
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.49 E-value=8.3e-07 Score=68.71 Aligned_cols=65 Identities=20% Similarity=0.504 Sum_probs=56.7
Q ss_pred CcEEEEEEEcCCC-CCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe
Q 043940 1 PTAHVIALDIPVM-KKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE 79 (123)
Q Consensus 1 ~d~~~i~~~lPG~-~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 79 (123)
|+.++|++.|||+ +..+|.|.|.+ ..|.|...... |.-.+.||..||.+..+|.|.
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~~----------------------y~L~l~LP~~V~~~~~~Akf~ 316 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKPK----------------------YRLDLPLPYPVDEDNGKAKFD 316 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCCc----------------------eEEEccCCCcccCCCceEEEc
Confidence 5689999999999 78999999999 88888854222 667899999999999999995
Q ss_pred --CCEEEEEEe
Q 043940 80 --NGALRIKVP 88 (123)
Q Consensus 80 --nGvL~I~~P 88 (123)
.++|+|+||
T Consensus 317 ~~~~~L~vtlp 327 (328)
T PF08190_consen 317 KKTKTLTVTLP 327 (328)
T ss_pred cCCCEEEEEEE
Confidence 589999998
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.08 E-value=0.00013 Score=44.66 Aligned_cols=69 Identities=12% Similarity=0.254 Sum_probs=55.2
Q ss_pred CcEEEEEEEcCCCC--CCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE
Q 043940 1 PTAHVIALDIPVMK--KDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL 78 (123)
Q Consensus 1 ~d~~~i~~~lPG~~--~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~ 78 (123)
++...|.+.+++.. ++++.|.+.+ ..|.|+..... +. .|...+.|...|+++.....+
T Consensus 9 ~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~---------~~----------~~~~~~~L~~~I~~~~s~~~~ 68 (79)
T PF04969_consen 9 DDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD---------GK----------EYLLEGELFGEIDPDESTWKV 68 (79)
T ss_dssp SSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT---------SC----------EEEEEEEBSS-BECCCEEEEE
T ss_pred CCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC---------Cc----------eEEEEEEEeeeEcchhcEEEE
Confidence 36788999996664 9999999999 99999955333 11 156678899999999999999
Q ss_pred eCCEEEEEEec
Q 043940 79 ENGALRIKVPE 89 (123)
Q Consensus 79 ~nGvL~I~~PK 89 (123)
.++.|.|+|.|
T Consensus 69 ~~~~i~i~L~K 79 (79)
T PF04969_consen 69 KDNKIEITLKK 79 (79)
T ss_dssp ETTEEEEEEEB
T ss_pred ECCEEEEEEEC
Confidence 99999999987
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.91 E-value=0.00017 Score=45.43 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=59.5
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
++...|++.++|+.++++.|++.+ +.|.+++.... +. .|.-.+.|...|+++..+..+..
T Consensus 6 ~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~---------~~----------~y~~~~~L~~~I~p~~s~~~v~~ 65 (84)
T cd06489 6 ESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS---------GN----------DYSLKLHLLHPIVPEQSSYKILS 65 (84)
T ss_pred CCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC---------CC----------cEEEeeecCceecchhcEEEEeC
Confidence 357889999999999999999999 89999876322 11 15557789999999988888889
Q ss_pred CEEEEEEeccccc
Q 043940 81 GALRIKVPELAEE 93 (123)
Q Consensus 81 GvL~I~~PK~~~~ 93 (123)
+.+.|.|.|....
T Consensus 66 ~kiei~L~K~~~~ 78 (84)
T cd06489 66 TKIEIKLKKTEAI 78 (84)
T ss_pred cEEEEEEEcCCCC
Confidence 9999999998643
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.68 E-value=0.00045 Score=43.27 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=54.4
Q ss_pred CcEEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe
Q 043940 1 PTAHVIALDIP-VMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE 79 (123)
Q Consensus 1 ~d~~~i~~~lP-G~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 79 (123)
++...|.+.+| |+.++|+.+.+.. +.|.|+... . . +.-...|...|+.+...-++.
T Consensus 7 ~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-~-----------~----------~~l~~~L~~~I~~~~s~w~~~ 63 (85)
T cd06467 7 LDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-G-----------E----------PLLDGELYAKVKVDESTWTLE 63 (85)
T ss_pred CCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-C-----------C----------ceEcCcccCceeEcCCEEEEe
Confidence 35788999997 7899999999999 999888531 1 1 112235888999999888899
Q ss_pred C-CEEEEEEecccc
Q 043940 80 N-GALRIKVPELAE 92 (123)
Q Consensus 80 n-GvL~I~~PK~~~ 92 (123)
+ ..|.|+|+|..+
T Consensus 64 ~~~~v~i~L~K~~~ 77 (85)
T cd06467 64 DGKLLEITLEKRNE 77 (85)
T ss_pred CCCEEEEEEEECCC
Confidence 9 999999999875
No 31
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.61 E-value=0.0011 Score=43.73 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=57.2
Q ss_pred cEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCC
Q 043940 2 TAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENG 81 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nG 81 (123)
+...|.+.+||+ +++.|.+.. ..|.|++.... ++. .|...+.|...|+++..+.++.++
T Consensus 10 ~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~--------~~~----------~y~~~~~L~~~I~pe~s~~~v~~~ 68 (108)
T cd06465 10 DVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG--------GGK----------KYEFDLEFYKEIDPEESKYKVTGR 68 (108)
T ss_pred CEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC--------CCe----------eEEEEeEhhhhccccccEEEecCC
Confidence 578899999998 889999999 99999874211 111 155677899999999999999999
Q ss_pred EEEEEEeccc
Q 043940 82 ALRIKVPELA 91 (123)
Q Consensus 82 vL~I~~PK~~ 91 (123)
.|.|+|.|..
T Consensus 69 kveI~L~K~~ 78 (108)
T cd06465 69 QIEFVLRKKE 78 (108)
T ss_pred eEEEEEEECC
Confidence 9999999987
No 32
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.51 E-value=0.0016 Score=41.21 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=53.0
Q ss_pred CcEEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe
Q 043940 1 PTAHVIALDIP-VMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE 79 (123)
Q Consensus 1 ~d~~~i~~~lP-G~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 79 (123)
++...|.+.+| |+.++|++|.+.. +.|.|... . +.. | ..-.|...|+.+...=.+.
T Consensus 7 ~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~--~---------~~~----------~-~~g~L~~~I~~d~Stw~i~ 63 (85)
T cd06493 7 EEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALK--D---------QAP----------L-LEGKLYSSIDHESSTWIIK 63 (85)
T ss_pred CCEEEEEEECCCCCChhhEEEEEec-CEEEEEeC--C---------CCe----------E-EeCcccCcccccCcEEEEe
Confidence 46788999995 9999999999999 88888642 1 000 1 2336888999998777777
Q ss_pred CC-EEEEEEecccc
Q 043940 80 NG-ALRIKVPELAE 92 (123)
Q Consensus 80 nG-vL~I~~PK~~~ 92 (123)
+| .|.|.|.|..+
T Consensus 64 ~~~~l~i~L~K~~~ 77 (85)
T cd06493 64 ENKSLEVSLIKKDE 77 (85)
T ss_pred CCCEEEEEEEECCC
Confidence 77 79999999864
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.39 E-value=0.0039 Score=39.68 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=56.7
Q ss_pred cEEEEEEEcCCCCC---CCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEE-cCCCCCccceeEE
Q 043940 2 TAHVIALDIPVMKK---DEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFK-MPMSADLEHVKAH 77 (123)
Q Consensus 2 d~~~i~~~lPG~~~---edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~-LP~~vd~~~i~A~ 77 (123)
+...|.+.+|+... +++.|.+.. +.|.|++.... +.. |.-.+. |-..|+++..+..
T Consensus 11 ~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~~---------~~~----------~~~~~~~L~~~I~~e~s~~~ 70 (92)
T cd06468 11 KFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDLN---------GKN----------YRFTINRLLKKIDPEKSSFK 70 (92)
T ss_pred CEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECCC---------CcE----------EEEEehHhhCccCccccEEE
Confidence 57789999999987 999999999 99999874211 111 333454 8899999999999
Q ss_pred EeCCEEEEEEecccc
Q 043940 78 LENGALRIKVPELAE 92 (123)
Q Consensus 78 ~~nGvL~I~~PK~~~ 92 (123)
+..+-+.|+|.|..+
T Consensus 71 ~~~~ki~i~L~K~~~ 85 (92)
T cd06468 71 VKTDRIVITLAKKKE 85 (92)
T ss_pred EeCCEEEEEEEeCCC
Confidence 999999999999875
No 34
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.39 E-value=0.0038 Score=39.70 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=58.7
Q ss_pred CcEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
++...|++.+.|+.++++.+.++. +.|.|+..... + ..|...+.|-..|+++..+.....
T Consensus 9 ~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~----------~~y~~~l~L~~~I~~~~s~~~v~~ 68 (87)
T cd06488 9 GSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG---------N----------KEFQLDIELWGVIDVEKSSVNMLP 68 (87)
T ss_pred CCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC---------C----------ceEEEEeeccceEChhHcEEEecC
Confidence 467889999999999999999998 88888743211 1 125667789999999998888899
Q ss_pred CEEEEEEeccccc
Q 043940 81 GALRIKVPELAEE 93 (123)
Q Consensus 81 GvL~I~~PK~~~~ 93 (123)
+.+.|+|.|..+.
T Consensus 69 ~kvei~L~K~~~~ 81 (87)
T cd06488 69 TKVEIKLRKAEPG 81 (87)
T ss_pred cEEEEEEEeCCCC
Confidence 9999999998754
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.27 E-value=0.06 Score=34.87 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=50.0
Q ss_pred cEEEEEEEcC-CCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 2 TAHVIALDIP-VMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 2 d~~~i~~~lP-G~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+...|.+.|| |.+..|+.|.+.. +.|.|.-. . ..+. .| .|...|+.+...=++++
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~--g----------~~~l-----~G------~L~~~I~~destWtled 70 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK--G----------QEVL-----KG------KLFDSVVADECTWTLED 70 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC--C----------EEEE-----cC------cccCccCcccCEEEEEC
Confidence 5677888777 8999999999999 88888731 1 0111 12 57778888887888888
Q ss_pred CE-EEEEEecccc
Q 043940 81 GA-LRIKVPELAE 92 (123)
Q Consensus 81 Gv-L~I~~PK~~~ 92 (123)
|. |.|.|.|...
T Consensus 71 ~k~l~I~L~K~~~ 83 (93)
T cd06494 71 RKLIRIVLTKSNR 83 (93)
T ss_pred CcEEEEEEEeCCC
Confidence 75 8999999753
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.05 E-value=0.049 Score=43.07 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=58.9
Q ss_pred cEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCC
Q 043940 2 TAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENG 81 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nG 81 (123)
+...|++.+.|+.++++.|++.. +.|.|+-.... +. .|...+.|-..|+++..+..+.--
T Consensus 166 ~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~---------~~----------~y~~~~~L~~~I~p~~s~~~v~~~ 225 (356)
T PLN03088 166 EEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPG---------ED----------AYHLQPRLFGKIIPDKCKYEVLST 225 (356)
T ss_pred CEEEEEEEecCCChHHcEEEeec-CEEEEEEecCC---------Cc----------ceeecccccccccccccEEEEecc
Confidence 57889999999999999999999 88888854322 11 144567888999999999988888
Q ss_pred EEEEEEecccccc
Q 043940 82 ALRIKVPELAEEK 94 (123)
Q Consensus 82 vL~I~~PK~~~~~ 94 (123)
.+.|+|.|.....
T Consensus 226 Kiei~l~K~~~~~ 238 (356)
T PLN03088 226 KIEIRLAKAEPIT 238 (356)
T ss_pred eEEEEEecCCCCC
Confidence 9999999987543
No 37
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.00 E-value=0.17 Score=33.48 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=52.4
Q ss_pred cEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCC
Q 043940 2 TAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENG 81 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nG 81 (123)
+...|++.+|+ .+|++|.+++ +.|.++|... .+.. |.-.+.|=..|+++..+-....-
T Consensus 11 ~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~---------~g~~----------y~~~l~l~~~I~pe~Sk~~v~~r 68 (106)
T cd00237 11 DYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG---------DNVK----------IYNEIELYDRVDPNDSKHKRTDR 68 (106)
T ss_pred CEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC---------CCcE----------EEEEEEeecccCcccCeEEeCCc
Confidence 56789999999 5899999999 8999998321 1222 33466777888988877777777
Q ss_pred EEEEEEecccc
Q 043940 82 ALRIKVPELAE 92 (123)
Q Consensus 82 vL~I~~PK~~~ 92 (123)
-+.|.|.|...
T Consensus 69 ~ve~~L~K~~~ 79 (106)
T cd00237 69 SILCCLRKGKE 79 (106)
T ss_pred eEEEEEEeCCC
Confidence 88899999864
No 38
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=94.97 E-value=0.11 Score=37.73 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=55.9
Q ss_pred cEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCC
Q 043940 2 TAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENG 81 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nG 81 (123)
+..+|++..+|+.++|++|.+.+ +.|.+..+... +.. |.....|-..|.++..+...---
T Consensus 13 ~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~---------g~~----------~~l~~~L~~~I~pe~~s~k~~st 72 (196)
T KOG1309|consen 13 TSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPS---------GSE----------YNLQLKLYHEIIPEKSSFKVFST 72 (196)
T ss_pred ceEEEEEEecCCCccceeEEeec-ceEEEEEecCC---------chh----------hhhhHHhcccccccceeeEeeee
Confidence 56789999999999999999999 88888755433 111 44445577888899888877788
Q ss_pred EEEEEEeccccc
Q 043940 82 ALRIKVPELAEE 93 (123)
Q Consensus 82 vL~I~~PK~~~~ 93 (123)
-+.|+|+|....
T Consensus 73 KVEI~L~K~~~i 84 (196)
T KOG1309|consen 73 KVEITLAKAEII 84 (196)
T ss_pred eEEEEeccccch
Confidence 899999996543
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=94.74 E-value=0.49 Score=30.07 Aligned_cols=68 Identities=9% Similarity=0.199 Sum_probs=48.9
Q ss_pred cEEEEEEEcC---CCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE
Q 043940 2 TAHVIALDIP---VMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL 78 (123)
Q Consensus 2 d~~~i~~~lP---G~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~ 78 (123)
+...|.+.|| |++..||+|.+.. ..|.|.-. . .... -.=.|...|+.+...=.+
T Consensus 8 ~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~--g----------~~~~----------i~G~L~~~V~~des~Wtl 64 (87)
T cd06492 8 SEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLK--G----------QPPI----------IDGELYNEVKVEESSWLI 64 (87)
T ss_pred CEEEEEEECCCCCCccceEEEEEEec-CEEEEEEC--C----------CceE----------EeCcccCcccccccEEEE
Confidence 4567888885 3889999999999 88888532 1 0111 122567788888877778
Q ss_pred eCC-EEEEEEecccc
Q 043940 79 ENG-ALRIKVPELAE 92 (123)
Q Consensus 79 ~nG-vL~I~~PK~~~ 92 (123)
++| .|.|.|-|...
T Consensus 65 ed~~~l~i~L~K~~~ 79 (87)
T cd06492 65 EDGKVVTVNLEKINK 79 (87)
T ss_pred eCCCEEEEEEEECCC
Confidence 886 89999999853
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=92.85 E-value=1.5 Score=27.65 Aligned_cols=71 Identities=10% Similarity=0.140 Sum_probs=47.1
Q ss_pred CcEEEEEEEcCCCCCC--CeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEE
Q 043940 1 PTAHVIALDIPVMKKD--EVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHL 78 (123)
Q Consensus 1 ~d~~~i~~~lPG~~~e--di~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~ 78 (123)
++...|.+..++.... ++.+.... +.|.|+-.... ..|...|.|-..|+.+. +..+
T Consensus 7 ~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~~--------------------~~~~~~~~L~~~I~~~~-~~~~ 64 (87)
T cd06490 7 DSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILGD--------------------KSYLLHLDLSNEVQWPC-EVRI 64 (87)
T ss_pred CCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECCC--------------------ceEEEeeeccccCCCCc-EEEE
Confidence 3567888888865444 45555455 67777632111 11556778888888775 5555
Q ss_pred e--CCEEEEEEeccccc
Q 043940 79 E--NGALRIKVPELAEE 93 (123)
Q Consensus 79 ~--nGvL~I~~PK~~~~ 93 (123)
. -|.+.|+|.|.++.
T Consensus 65 ~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 65 STETGKIELVLKKKEPE 81 (87)
T ss_pred cccCceEEEEEEcCCCC
Confidence 5 78999999998754
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=91.37 E-value=2.8 Score=27.50 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=49.3
Q ss_pred cEEEEEEEcC-CC-CCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEe
Q 043940 2 TAHVIALDIP-VM-KKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLE 79 (123)
Q Consensus 2 d~~~i~~~lP-G~-~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~ 79 (123)
+...|.+.|| |. +..+|.|.+.. ..|.|.-.... +...+. .| .|+..|+.+...=+++
T Consensus 14 ~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~--------~~~~~i-----~G------~L~~~V~~des~Wtle 73 (102)
T cd06495 14 TDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG--------GEKVLM-----EG------EFTHKINTENSLWSLE 73 (102)
T ss_pred CeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC--------CCceEE-----eC------cccCcccCccceEEEe
Confidence 4678999999 54 58999999999 88888743111 001111 12 4777888888777788
Q ss_pred CC-EEEEEEeccc
Q 043940 80 NG-ALRIKVPELA 91 (123)
Q Consensus 80 nG-vL~I~~PK~~ 91 (123)
+| .|.|+|-|..
T Consensus 74 d~~~l~I~L~K~~ 86 (102)
T cd06495 74 PGKCVLLSLSKCS 86 (102)
T ss_pred CCCEEEEEEEECC
Confidence 86 5899999974
No 42
>PF14913 DPCD: DPCD protein family
Probab=90.76 E-value=1 Score=33.06 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=27.0
Q ss_pred EEEEEEcCC------CCCccceeEEEeCCEEEEEEeccc
Q 043940 59 FWRQFKMPM------SADLEHVKAHLENGALRIKVPELA 91 (123)
Q Consensus 59 f~r~~~LP~------~vd~~~i~A~~~nGvL~I~~PK~~ 91 (123)
|.+.|.+|+ ..+.+.++..+.|..|.|+..|-.
T Consensus 132 YyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 132 YYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred ceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecCcH
Confidence 778999995 336677888999999999998853
No 43
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=87.57 E-value=5.9 Score=27.10 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=36.6
Q ss_pred CeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEE
Q 043940 17 EVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIK 86 (123)
Q Consensus 17 di~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~ 86 (123)
.+++..++ +.|.|+..... ..-...|..... ...-.-.+.||.+...+.++....+|-++|.
T Consensus 86 ~~~~~~~~-~~L~I~~~~~~------~~~~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~ 147 (166)
T PF13349_consen 86 KPEISVEG-GTLTIKSKDRE------SFFFKGFNFNNS-DNKSKITIYLPKDYKLDKIDIKTSSGDITIE 147 (166)
T ss_pred EEEEEEcC-CEEEEEEeccc------ccccceEEEccc-CCCcEEEEEECCCCceeEEEEEeccccEEEE
Confidence 46666666 77777765221 000112222111 2345567888888878888888888888765
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=85.74 E-value=2.2 Score=27.16 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=29.8
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEecccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELAE 92 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 92 (123)
.|.-...|| .++.+.|+.++.+|.|+|+--+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 377889999 8899999999999999999987653
No 45
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=84.78 E-value=2.2 Score=26.96 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=28.8
Q ss_pred EEEEEEcCCCCCccceeEEEeCCEEEEEEeccc
Q 043940 59 FWRQFKMPMSADLEHVKAHLENGALRIKVPELA 91 (123)
Q Consensus 59 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 91 (123)
|.-.+.|| .++.+.|+-.+++|.|+|+--+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 77889999 889999999999999999997654
No 46
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=84.35 E-value=2.2 Score=26.78 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=28.8
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEeccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELA 91 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 91 (123)
.|.-.+.|| ++..+.|+.++.||.|+|+--+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 377889999 889999999999999999987643
No 47
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=83.77 E-value=2.8 Score=26.16 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=28.5
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEecc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPEL 90 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 90 (123)
.|.-.+.|| +++.+.|+-.+.+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 488899999 88999999999999999998654
No 48
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=83.76 E-value=2.7 Score=26.54 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=28.4
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEecc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPEL 90 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 90 (123)
.|.-.+.|| +++.+.|+..+.+|.|+|+--+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477899999 88999999999999999998654
No 49
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=83.19 E-value=2.1 Score=26.97 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.0
Q ss_pred EEEEEEEcCCCCCCCeEEEEecCcEEEEEE
Q 043940 3 AHVIALDIPVMKKDEVKIEVEENRVLRMSG 32 (123)
Q Consensus 3 ~~~i~~~lPG~~~edi~I~i~~~~~L~I~g 32 (123)
.|.-.+.||++..+.++-++.+ |.|+|+-
T Consensus 63 ~f~r~~~lp~v~~~~i~A~~~d-GvL~I~l 91 (93)
T cd06471 63 SFSRSFYLPNVDEEEIKAKYEN-GVLKITL 91 (93)
T ss_pred EEEEEEECCCCCHHHCEEEEEC-CEEEEEE
Confidence 4566678999999999999999 9999974
No 50
>PRK10743 heat shock protein IbpA; Provisional
Probab=81.85 E-value=7 Score=26.96 Aligned_cols=34 Identities=6% Similarity=0.081 Sum_probs=29.8
Q ss_pred cEEEEEEEcCCCCCccceeEEEeCCEEEEEEeccc
Q 043940 57 GKFWRQFKMPMSADLEHVKAHLENGALRIKVPELA 91 (123)
Q Consensus 57 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 91 (123)
..|.-...|| +++.+.|+.++++|+|+|+.-+..
T Consensus 45 ~~~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 45 NHYRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred CEEEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 4588899999 889999999999999999987654
No 51
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=81.36 E-value=4.6 Score=25.47 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=30.6
Q ss_pred cEEEEEEEcCCCCCccceeEEEeCCEEEEEEeccccc
Q 043940 57 GKFWRQFKMPMSADLEHVKAHLENGALRIKVPELAEE 93 (123)
Q Consensus 57 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~ 93 (123)
..|.-.+.|| .+..+.|+-.+.++.|+|+-.+....
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 3577899999 68999999999999999998766543
No 52
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=81.25 E-value=3.7 Score=25.73 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=28.3
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEecc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPEL 90 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 90 (123)
.|.-.+.|| .++++.|+-++.+|.|+|+--+.
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEe
Confidence 377889999 88999999999999999997664
No 53
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=79.48 E-value=5.3 Score=24.68 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=30.2
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEecccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELAE 92 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 92 (123)
.|.-.+.|| ++..+.|+..+.++.|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 488899999 6999999999999999999987654
No 54
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=79.15 E-value=4.7 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=28.1
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEecc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPEL 90 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 90 (123)
.|.-.+.|| +++.+.|+..+.++.|+|.--+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 478899999 88999999999999999998543
No 55
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=78.15 E-value=5.5 Score=25.06 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=29.1
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEeccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELA 91 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 91 (123)
.|.-.+.|| +++.+.|+-.+.++.|+|+--+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 488899999 889999999999999999987643
No 56
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=77.97 E-value=7.3 Score=24.65 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=27.8
Q ss_pred cEEEEEEEcCCCCCccceeEEEeCCEEEEEEecc
Q 043940 57 GKFWRQFKMPMSADLEHVKAHLENGALRIKVPEL 90 (123)
Q Consensus 57 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 90 (123)
..|.-.+.|| +++.+.|+-.+.++.|.|+.-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEEETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEEecCccceeceee
Confidence 3477899999 88999999999999999999887
No 57
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=77.12 E-value=6 Score=24.93 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=28.9
Q ss_pred EEEEEEcCCCCCccceeEEEeCCEEEEEEecccc
Q 043940 59 FWRQFKMPMSADLEHVKAHLENGALRIKVPELAE 92 (123)
Q Consensus 59 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~ 92 (123)
|.-.+.|| .+..+.|+..+.++.|+|+.-+...
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~~ 41 (87)
T cd06481 9 FSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREKK 41 (87)
T ss_pred EEEEEECC-CCChHHeEEEEECCEEEEEEEEeee
Confidence 77889999 8899999999999999999876543
No 58
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=76.52 E-value=7.1 Score=25.11 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=25.7
Q ss_pred EEEEEEEcC-CCCCCCeEEEEecCcEEEEEE
Q 043940 3 AHVIALDIP-VMKKDEVKIEVEENRVLRMSG 32 (123)
Q Consensus 3 ~~~i~~~lP-G~~~edi~I~i~~~~~L~I~g 32 (123)
.|.=.+.|| +++.+.|+-.+..+|.|+|.+
T Consensus 59 ~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 59 NFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 467788898 889999999999549999986
No 59
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=76.37 E-value=12 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=29.3
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEeccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELA 91 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 91 (123)
.|.-...|| +++.+.|+-.+++|.|+|+--+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 588899999 889999999999999999987653
No 60
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=74.20 E-value=15 Score=26.42 Aligned_cols=21 Identities=14% Similarity=0.667 Sum_probs=17.7
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 043940 15 KDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~ 36 (123)
|++|+|++++ +.|+|+|.+-.
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G~ 32 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKGT 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 6889999999 99999987555
No 61
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=74.06 E-value=18 Score=26.21 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 14 KKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 14 ~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
=|++++|++.+ +.++|+|.+-. ..+.|.-+ .++..++||.|.|...
T Consensus 12 IP~~V~v~i~~-~~v~VkGp~G~----------------------L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEG-LVVTVKGPKGE----------------------LTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEEC-CEEEEECCCeE----------------------EEEEecCC------cEEEEEECCEEEEEEC
Confidence 37899999999 99999987555 44444322 3455668887777755
No 62
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=73.11 E-value=21 Score=25.50 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 15 KDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
|++++|++.+ +.|+|+|.+-. ..+.|. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~G~----------------------L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPKGE----------------------VTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCCeE----------------------EEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6889999999 99999987554 444442 32 3445567887777754
No 63
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=73.00 E-value=8.1 Score=22.30 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.5
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEec
Q 043940 11 PVMKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 11 PG~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
+++...+|.|.+.+ +.+.++|.-..
T Consensus 12 ~~~~~~~i~v~v~~-g~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVEN-GVVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEEC-TEEEEEEEESS
T ss_pred cccCCCeEEEEEEC-CEEEEEeeCcH
Confidence 46777789999999 99999999865
No 64
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=71.84 E-value=21 Score=25.60 Aligned_cols=21 Identities=14% Similarity=0.411 Sum_probs=18.0
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 043940 15 KDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~ 36 (123)
|++|+|++++ +.|+|+|.+-.
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~G~ 31 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPKGE 31 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCCeE
Confidence 6899999998 99999987555
No 65
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=71.79 E-value=12 Score=22.51 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=30.2
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEeccccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELAEE 93 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~ 93 (123)
.|.-.+.|| +++.+.|+..+.++.|.|+.-+....
T Consensus 8 ~~~i~~~lp-g~~~~~i~V~v~~~~l~I~g~~~~~~ 42 (88)
T cd06464 8 AYVVEADLP-GFKKEDIKVEVEDGVLTISGEREEEE 42 (88)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEeccc
Confidence 477899999 48999999999999999998877543
No 66
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=70.97 E-value=23 Score=22.15 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=27.6
Q ss_pred EEEEEEEcCCCCCccceeEEEeCC-EEEEEEeccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENG-ALRIKVPELA 91 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nG-vL~I~~PK~~ 91 (123)
.|.-.+.|| ++..+.|+..+.+| +|+|+--+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 477899999 68999999999875 9999987653
No 67
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=70.76 E-value=14 Score=21.86 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=26.1
Q ss_pred cEEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEe
Q 043940 2 TAHVIALDIPVMKKDEVKIEVEENRVLRMSGERK 35 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~ 35 (123)
..|.|++..||+..-.-.|.+..+....|.....
T Consensus 35 G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 35 GEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred ccEEEEEEECCCeeEEEEEEECCCCEEEEEEEEE
Confidence 5688999999998888888888656677766543
No 68
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=70.16 E-value=9 Score=23.03 Aligned_cols=46 Identities=13% Similarity=0.365 Sum_probs=30.7
Q ss_pred CCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 15 KDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
|+.++|++.+ ..+.+.|.+.. .++.||..+.. ....+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g~------------------------l~~~~~~~v~v---~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKGE------------------------LSRPIPPGVKV---EIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSSE------------------------EEEEETTTEEE---EEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCEe------------------------EEEECCCCeeE---EEEcCCCceEEEEC
Confidence 5678999999 99999977544 46667755322 22355776666654
No 69
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=67.80 E-value=25 Score=25.20 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=18.0
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 043940 15 KDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~ 36 (123)
|++|+|++.+ +.|+|+|.+-.
T Consensus 12 P~~V~v~~~~-~~v~vkGp~G~ 32 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPKGE 32 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCEE
Confidence 6899999999 99999987555
No 70
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=67.46 E-value=5.5 Score=23.68 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=16.2
Q ss_pred cceeEEEeCCEEEEEEeccccccCCCCeEEEeee
Q 043940 72 EHVKAHLENGALRIKVPELAEEKRRQPKVISINE 105 (123)
Q Consensus 72 ~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~ 105 (123)
..|.|.|+||+|.-.=|-.-+. ....+|.|..
T Consensus 3 ~~I~aiYe~GvlkPl~~~~L~E--g~~V~i~I~~ 34 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVDLPE--GEEVKITIEE 34 (60)
T ss_dssp --EEEEEETTEEEECS-----T--TEEEEEEE--
T ss_pred ceEEEEEECCEEEECCCCCCCC--CCEEEEEEec
Confidence 3489999999998664443322 1235555555
No 71
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=67.36 E-value=24 Score=25.75 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=33.9
Q ss_pred cCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 10 IPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 10 lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
.|=-=|++++|++.+ +.|+|+|.+-. ..+.|.=|. ..+....+||.|.|..+
T Consensus 8 ~~I~IP~~V~V~i~~-~~v~VkGp~G~----------------------L~~~~~~~~----~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 8 EKIRIPEGVTVTVKS-RKVTVTGKYGE----------------------LTRSFRHLP----VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCEecCCCCEEEEEC-CEEEEECCCce----------------------EEEEecCCC----ceEEEEeCCCEEEEEeC
Confidence 333347899999999 99999987554 444443211 23555668887777754
No 72
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=60.80 E-value=23 Score=24.29 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=30.2
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEeccc
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELA 91 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~ 91 (123)
.|.-.+.|| .++.+.|+-.+.++.|+|+.-+..
T Consensus 51 ~~~I~~elP-G~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAELP-GVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEcC-CCChHHeEEEEECCEEEEEEEecc
Confidence 578899999 889999999999999999998875
No 73
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=60.00 E-value=36 Score=20.54 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.1
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
...-.|.+|..++.+.+...+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 3567888999999999999999999999986
No 74
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=59.12 E-value=46 Score=24.16 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=18.9
Q ss_pred CCCCCeEEEEecCcEEEEEEEEec
Q 043940 13 MKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 13 ~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
.-|+++++++++ +.++++|.+-.
T Consensus 10 ~~P~gV~V~i~~-~~v~vkGpkGe 32 (178)
T COG0097 10 VIPAGVTVSIEG-QVVTVKGPKGE 32 (178)
T ss_pred ecCCCeEEEEec-cEEEEECCCcE
Confidence 348899999998 99999987544
No 75
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=57.79 E-value=27 Score=25.45 Aligned_cols=21 Identities=24% Similarity=0.681 Sum_probs=18.0
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 043940 15 KDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~ 36 (123)
|++|+|++.+ +.|+|+|.+-.
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG~ 32 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRGT 32 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCcE
Confidence 6889999999 99999987555
No 76
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=57.50 E-value=5.9 Score=27.96 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=18.8
Q ss_pred cCCCCCccceeEEEeCCEEEEEEe
Q 043940 65 MPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 65 LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
|-+++..+.-.+.|.||+|+|.++
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HHhhcCccccccccccceEEEEec
Confidence 335555566778899999999988
No 77
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=51.20 E-value=35 Score=21.32 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=25.8
Q ss_pred cCceEEEEeeeccEEEEEEEcCCCCCccc-eeEEEeCCEE-EEE
Q 043940 45 EGEKWQRAERTFGKFWRQFKMPMSADLEH-VKAHLENGAL-RIK 86 (123)
Q Consensus 45 ~~~~~~~~e~~~~~f~r~~~LP~~vd~~~-i~A~~~nGvL-~I~ 86 (123)
.-+.|.+....+-=|.|.|.+|+...+.+ +.-.|.+|-+ .|.
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 33456655555556889999999986654 7888888744 344
No 78
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=51.09 E-value=1.2e+02 Score=23.68 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=33.4
Q ss_pred EEEEEEEcCCCCCccceeEEEeCCEEEEEEeccccccCC
Q 043940 58 KFWRQFKMPMSADLEHVKAHLENGALRIKVPELAEEKRR 96 (123)
Q Consensus 58 ~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~~~~ 96 (123)
.|...+.|=.-|+.++..+.+-.--+.|+|+|+++.++.
T Consensus 261 ~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k~ep~sWa 299 (320)
T KOG1667|consen 261 SFDLDYKLWGVVNVEESSVVMGETKVEISLKKAEPGSWA 299 (320)
T ss_pred eeeccceeeeeechhhceEEeecceEEEEEeccCCCCcc
Confidence 477788888888999999999999999999999887543
No 79
>PF14730 DUF4468: Domain of unknown function (DUF4468) with TBP-like fold
Probab=50.59 E-value=61 Score=20.33 Aligned_cols=16 Identities=13% Similarity=0.399 Sum_probs=12.1
Q ss_pred eeEEEeCCEEEEEEec
Q 043940 74 VKAHLENGALRIKVPE 89 (123)
Q Consensus 74 i~A~~~nGvL~I~~PK 89 (123)
+.+.++||-.++++-.
T Consensus 70 l~i~~kDgk~r~~~~~ 85 (91)
T PF14730_consen 70 LIIDCKDGKYRLTITN 85 (91)
T ss_pred EEEEEECCEEEEEEEE
Confidence 5677888888888754
No 80
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=49.38 E-value=67 Score=20.47 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=27.8
Q ss_pred cEEEEEEEcCCCCCccceeEEEeCCEEEEEE
Q 043940 57 GKFWRQFKMPMSADLEHVKAHLENGALRIKV 87 (123)
Q Consensus 57 ~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~ 87 (123)
-...-.|+||.++....+...+...-|+|.+
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 4466788999999999999999999999998
No 81
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=48.96 E-value=38 Score=25.39 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=27.9
Q ss_pred EEEecCcEEEEEEEEeccCCccccccCceEE------EEeeeccEEEEEEEcCCC
Q 043940 20 IEVEENRVLRMSGERKSDDYYKEGVEGEKWQ------RAERTFGKFWRQFKMPMS 68 (123)
Q Consensus 20 I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~------~~e~~~~~f~r~~~LP~~ 68 (123)
+.+.+ |.|+|++.+..... ......|. .....+|.|+-+++||..
T Consensus 60 v~v~~-G~L~i~a~~~~~~~---~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVED-GNLVLSATRHPGTE---LGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEEC-CEEEEEEEcCCCCc---CCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 56778 99999998776210 00111111 223467899999999953
No 82
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=47.68 E-value=82 Score=20.98 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=32.1
Q ss_pred EEEEEEEcCCCC-CccceeEEEeCCEEEEEEeccccccCCCCeEEEeeecC
Q 043940 58 KFWRQFKMPMSA-DLEHVKAHLENGALRIKVPELAEEKRRQPKVISINEEP 107 (123)
Q Consensus 58 ~f~r~~~LP~~v-d~~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 107 (123)
.|..-|....++ +...|+-.++|.+|....|+. ..++|.|+.++
T Consensus 45 tys~li~~d~dvG~l~~Vkf~W~~~~~n~~~p~~------~~~~I~Vq~Ge 89 (113)
T cd01759 45 TYSAFIDVDVDVGPLTKVKFIWNNNVINITLPKV------GAEKITVQSGK 89 (113)
T ss_pred EEEEEEEccCCCCCEEEEEEEEeCCccCCCCCeE------EEEEEEEEeCC
Confidence 455666666666 777788888888777666665 36899999764
No 83
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=45.07 E-value=18 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=25.5
Q ss_pred EEEcC-CCCCCCeEEEEecCcEEEEEEEEec
Q 043940 7 ALDIP-VMKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 7 ~~~lP-G~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
..-|| |++++.|.=.+..+|.|+|+|.+..
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 34454 8999999999998899999999777
No 84
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=44.63 E-value=35 Score=23.58 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.0
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEec
Q 043940 11 PVMKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 11 PG~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
.|+...+++|.+.+ |.++++|....
T Consensus 38 ~~~~~~~i~V~v~~-G~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVED-GKATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeC-CEEEEEEEeCC
Confidence 47788889999999 99999999875
No 85
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=43.33 E-value=31 Score=22.73 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=14.7
Q ss_pred ceeEEEeCCEEEEEEec
Q 043940 73 HVKAHLENGALRIKVPE 89 (123)
Q Consensus 73 ~i~A~~~nGvL~I~~PK 89 (123)
.+.+.+.+|+|+|.++.
T Consensus 31 d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 31 DIDVERSGGVLTIEFPD 47 (109)
T ss_dssp TEEEEEETTEEEEEETT
T ss_pred ceEEEccCCEEEEEECC
Confidence 57899999999999953
No 86
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=43.27 E-value=27 Score=22.98 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=20.1
Q ss_pred cceeEEEeCCEEEEEEeccccccCCCCeEEEeeecC
Q 043940 72 EHVKAHLENGALRIKVPELAEEKRRQPKVISINEEP 107 (123)
Q Consensus 72 ~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 107 (123)
..+.+.+.+|||+|+++. ..+|-|..-+
T Consensus 28 ~d~D~e~~~gVLti~f~~--------~~~~VINkQ~ 55 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN--------GSTIVINRQE 55 (105)
T ss_pred cCEeeeccCCEEEEEECC--------CCEEEEeCCc
Confidence 457788899999999982 3455566543
No 87
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=42.15 E-value=24 Score=23.22 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=14.1
Q ss_pred eeEEEeCCEEEEEEec
Q 043940 74 VKAHLENGALRIKVPE 89 (123)
Q Consensus 74 i~A~~~nGvL~I~~PK 89 (123)
+.+.+.+|||+|+++.
T Consensus 29 ~D~e~~~gVLti~f~~ 44 (105)
T PRK00446 29 IDCERNGGVLTLTFEN 44 (105)
T ss_pred eeeeccCCEEEEEECC
Confidence 6788899999999984
No 88
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=41.78 E-value=55 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=14.7
Q ss_pred CCCeEEEEecCcEEEEEEEEec
Q 043940 15 KDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~ 36 (123)
+..+.+.... +.+.|+|..+.
T Consensus 130 ~~~i~v~~~~-~~V~V~Gtlkt 150 (188)
T PRK13726 130 QTSVRVWPQY-GRVDIRGVLKT 150 (188)
T ss_pred eeeEEEccCC-CEEEEEEEEEE
Confidence 4556666556 88888888776
No 89
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=41.19 E-value=1.2e+02 Score=22.39 Aligned_cols=71 Identities=8% Similarity=0.163 Sum_probs=47.6
Q ss_pred EEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCE
Q 043940 3 AHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGA 82 (123)
Q Consensus 3 ~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGv 82 (123)
..-+.+.|-|+..+.|.+.+.. +.|-+.-..- .+..|.. -.=.|-..|+.++..-..+-..
T Consensus 85 fVK~yItL~GV~eenVqv~ftp-~Sldl~v~dl---------qGK~y~~---------~vnnLlk~I~vEks~~kvKtd~ 145 (224)
T KOG3260|consen 85 FVKMYITLEGVDEENVQVEFTP-MSLDLKVHDL---------QGKNYRM---------IVNNLLKPISVEKSSKKVKTDT 145 (224)
T ss_pred eeEEEEEeecccccceeEEecc-cceeeeeeec---------CCcceee---------ehhhhccccChhhcccccccce
Confidence 4567889999999999999999 8776663311 2222221 1112445678888777788788
Q ss_pred EEEEEecccc
Q 043940 83 LRIKVPELAE 92 (123)
Q Consensus 83 L~I~~PK~~~ 92 (123)
+.|.+.|.+.
T Consensus 146 v~I~~kkVe~ 155 (224)
T KOG3260|consen 146 VLILCKKVEN 155 (224)
T ss_pred EEEeehhhhc
Confidence 8888866653
No 90
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=40.86 E-value=25 Score=23.02 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=14.0
Q ss_pred eeEEEeCCEEEEEEec
Q 043940 74 VKAHLENGALRIKVPE 89 (123)
Q Consensus 74 i~A~~~nGvL~I~~PK 89 (123)
+.+.+.+|||+|+++.
T Consensus 27 ~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 27 IDCERAGGVLTLTFEN 42 (102)
T ss_pred eeeecCCCEEEEEECC
Confidence 6788899999999984
No 91
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=39.84 E-value=33 Score=20.37 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=19.6
Q ss_pred cEEEEEEEcCCCCCCCe-EEEEecCcEEE
Q 043940 2 TAHVIALDIPVMKKDEV-KIEVEENRVLR 29 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi-~I~i~~~~~L~ 29 (123)
..|.|.+..+|+..... .|.+..+....
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~ 76 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTT 76 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEE
Confidence 57888899999888877 57777534433
No 92
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=39.21 E-value=1e+02 Score=22.29 Aligned_cols=49 Identities=10% Similarity=0.178 Sum_probs=27.5
Q ss_pred CCCeEEEEecCcEEEEEEEEeccCCccccccCceEEE-EeeeccEEEEEEEcCCC
Q 043940 15 KDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQR-AERTFGKFWRQFKMPMS 68 (123)
Q Consensus 15 ~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~-~e~~~~~f~r~~~LP~~ 68 (123)
++++.| .+ +.|+|++.+.... ....-...+.. .-..+|.|+-++++|..
T Consensus 31 ~~nv~v--~~-g~L~l~~~~~~~~--~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEF--SD-GGLALTLTNDTYG--EKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEE--EC-CeEEEEEeCCcCC--CCccccceEEECceEEeeEEEEEEEcCCC
Confidence 455544 47 8899998765410 00011112221 22458999999999853
No 93
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=38.71 E-value=27 Score=20.78 Aligned_cols=23 Identities=17% Similarity=0.445 Sum_probs=18.7
Q ss_pred CCCCCeEEEEecCcEEEEEEEEec
Q 043940 13 MKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 13 ~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
|+.+.|.|.... +.|.|+|+.=.
T Consensus 23 f~~~~I~l~t~~-g~l~I~G~~L~ 45 (66)
T PF07873_consen 23 FDDEEIRLNTKK-GKLTIKGEGLV 45 (66)
T ss_dssp EETTEEEEEETT-EEEEEEEEEEE
T ss_pred ECCCEEEEEeCC-EEEEEECceEE
Confidence 467788888888 99999998654
No 94
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=38.56 E-value=26 Score=27.53 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=53.9
Q ss_pred EEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCE
Q 043940 3 AHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGA 82 (123)
Q Consensus 3 ~~~i~~~lPG~~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGv 82 (123)
...|.+.-|-+..++|++-+++ ++|.|+-+... .+. .|.....|-..|+++......---.
T Consensus 187 t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~----------~~~--------~~~~~~~Ly~ev~P~~~s~k~fsK~ 247 (368)
T COG5091 187 TAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRR----------LRL--------WNDITISLYKEVYPDIRSIKSFSKR 247 (368)
T ss_pred eEEEEEecCCCCccccceeecC-Ccceeeeeccc----------cch--------HHHhhhhhhhhcCcchhhhhhcchh
Confidence 3456677788999999999999 99999865443 111 1446777888999988777665588
Q ss_pred EEEEEecccccc
Q 043940 83 LRIKVPELAEEK 94 (123)
Q Consensus 83 L~I~~PK~~~~~ 94 (123)
+.|.+-|....+
T Consensus 248 ~e~~l~KV~~v~ 259 (368)
T COG5091 248 VEVHLRKVEMVR 259 (368)
T ss_pred heehhhhhhhhh
Confidence 888888886553
No 95
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=36.81 E-value=1.5e+02 Score=21.63 Aligned_cols=60 Identities=10% Similarity=0.174 Sum_probs=40.1
Q ss_pred cCCC-CCCCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 10 IPVM-KKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 10 lPG~-~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
.||+ +..+|.+.|.. +.|.|.-.... .+ -.=.|...|+.+...=++++|.+.|.+-
T Consensus 37 p~~~~ksk~v~~~Iq~-~hI~V~~kg~~------------~i----------ldG~L~~~vk~des~WtiEd~k~i~i~l 93 (179)
T KOG2265|consen 37 PPGTAKSKDVHCSIQS-KHIKVGLKGQP------------PI----------LDGELSHSVKVDESTWTIEDGKMIVILL 93 (179)
T ss_pred CCCCcccceEEEEeee-eEEEEecCCCC------------ce----------ecCccccccccccceEEecCCEEEEEEe
Confidence 4677 88899999999 88777622111 11 1123566778887777899997777766
Q ss_pred cccc
Q 043940 89 ELAE 92 (123)
Q Consensus 89 K~~~ 92 (123)
++..
T Consensus 94 ~K~~ 97 (179)
T KOG2265|consen 94 KKSN 97 (179)
T ss_pred eccc
Confidence 6543
No 96
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=36.46 E-value=62 Score=18.91 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=17.5
Q ss_pred EcCCCCC-CCeEEEEecCcEEEEE
Q 043940 9 DIPVMKK-DEVKIEVEENRVLRMS 31 (123)
Q Consensus 9 ~lPG~~~-edi~I~i~~~~~L~I~ 31 (123)
+-.||.. +.|+|++.. +.|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~-g~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMP-GCLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEEC-CEEEEe
Confidence 3468865 569999999 999886
No 97
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=35.35 E-value=30 Score=23.63 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=25.1
Q ss_pred EEEEEEcCCCCCcccee---EEE--eCCEEEEEEeccccc
Q 043940 59 FWRQFKMPMSADLEHVK---AHL--ENGALRIKVPELAEE 93 (123)
Q Consensus 59 f~r~~~LP~~vd~~~i~---A~~--~nGvL~I~~PK~~~~ 93 (123)
|.-...+-..+|.++++ -.. +++.|+|++|...--
T Consensus 42 ~~~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i~ 81 (157)
T PF14014_consen 42 VIYPGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPEIL 81 (157)
T ss_pred EEEEEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcEEe
Confidence 44445555667778877 666 889999999987543
No 98
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=35.32 E-value=1.3e+02 Score=20.98 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=26.0
Q ss_pred cEEEEEEEcCCC---CCCCeEEEEecCcEEEEEEEEe
Q 043940 2 TAHVIALDIPVM---KKDEVKIEVEENRVLRMSGERK 35 (123)
Q Consensus 2 d~~~i~~~lPG~---~~edi~I~i~~~~~L~I~g~~~ 35 (123)
+.|++.+.+|.+ ....|+|++..++.+.=+...+
T Consensus 49 N~yt~~~~aPd~~~~pag~V~v~v~~~g~~~~~~~ik 85 (142)
T PF14545_consen 49 NPYTLQFKAPDFCLEPAGSVNVRVYCDGVSLGTRQIK 85 (142)
T ss_pred CCEEEEEECchhcCCCCceEEEEEEECCEEEEEEeEE
Confidence 568999999999 8899999999756554444433
No 99
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=33.96 E-value=33 Score=22.28 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=17.5
Q ss_pred eEEEeCCEEEEEEeccccccCCCCeEEEeeecC
Q 043940 75 KAHLENGALRIKVPELAEEKRRQPKVISINEEP 107 (123)
Q Consensus 75 ~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~~~~ 107 (123)
.+.+.+|||+|+++. ..+|-|.+-+
T Consensus 30 D~e~~~gVLti~~~~--------~~~~VINkQ~ 54 (97)
T TIGR03422 30 DVEYSSGVLTLELPS--------VGTYVINKQP 54 (97)
T ss_pred ccccCCCEEEEEECC--------CCEEEEeCCC
Confidence 677899999999953 3455555543
No 100
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=32.71 E-value=1.2e+02 Score=23.19 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=26.8
Q ss_pred EEEEecCcEEEEEEEEeccCCc----cc-ccc-----CceEE-EEeeeccEEEEEEEcCC
Q 043940 19 KIEVEENRVLRMSGERKSDDYY----KE-GVE-----GEKWQ-RAERTFGKFWRQFKMPM 67 (123)
Q Consensus 19 ~I~i~~~~~L~I~g~~~~~~~~----~~-~~~-----~~~~~-~~e~~~~~f~r~~~LP~ 67 (123)
.+.+.+ |.|+|++.+...... .. ... ...+. .....||.|+-+++||.
T Consensus 45 Nv~v~d-G~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISN-GILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeC-CEEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 556788 999999987641100 00 000 11111 11245789999999764
No 101
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=31.78 E-value=86 Score=22.37 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=15.7
Q ss_pred CCCCeEEEEecCcEEEEEEEEec
Q 043940 14 KKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 14 ~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
.++++.+.-.+ +.+.|+|....
T Consensus 129 ~~~~i~~d~~~-~~V~V~G~l~t 150 (187)
T PF05309_consen 129 YPKSIEVDPET-LTVFVTGTLKT 150 (187)
T ss_pred EEeEEEEecCC-CEEEEEEEEEE
Confidence 34566666667 88888988665
No 102
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=31.33 E-value=1.3e+02 Score=23.35 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=26.5
Q ss_pred EEecCcEEEEEEEEeccCCccccccCceEE---EEeeeccEEEEEEEcCCC
Q 043940 21 EVEENRVLRMSGERKSDDYYKEGVEGEKWQ---RAERTFGKFWRQFKMPMS 68 (123)
Q Consensus 21 ~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~---~~e~~~~~f~r~~~LP~~ 68 (123)
.+.+ +.|+|++.+.... ....-...+. .....+|.|+-+++||..
T Consensus 44 ~v~~-G~L~I~a~~~~~~--~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~ 91 (295)
T cd02180 44 TTIN-GSLRITMDQFRNH--GLNFRSGMLQSWNKLCFTGGYIEASASLPGK 91 (295)
T ss_pred EecC-CeEEEEEEeecCC--CCCEEEEEEEECCcceeeCCEEEEEEECCCC
Confidence 5567 9999999876410 0001111111 234457899999999963
No 103
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=31.18 E-value=60 Score=28.83 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=34.1
Q ss_pred EEEEeeeccEEE-EEEEcC--CCCCccceeEEEeCCEEEEEEeccccccCCCCeEEEee
Q 043940 49 WQRAERTFGKFW-RQFKMP--MSADLEHVKAHLENGALRIKVPELAEEKRRQPKVISIN 104 (123)
Q Consensus 49 ~~~~e~~~~~f~-r~~~LP--~~vd~~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~ 104 (123)
....-+..|.|- ..=..| +.+|...+...|++|+|++.+|..+.. ....|+|.
T Consensus 721 v~v~vkg~G~lg~YsS~~P~~c~v~~~~~~f~y~~g~~~~~~~~~~~~---~~~~v~~~ 776 (777)
T PLN02711 721 VQIGVKGSGEMRVFASEKPRSCKIDGEEVEFGYEDCMVVVQVPWSGSS---GLSLIEYL 776 (777)
T ss_pred EEEEEEeeeEEEEEecCCCeEEEECCEEeeeEecCCEEEEEecCCCcC---CceeEEEe
Confidence 333344455553 333455 556777788889999999999987632 45666653
No 104
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=30.04 E-value=19 Score=29.41 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.0
Q ss_pred eeccEEEEEEEcCCCCCccceeEEE
Q 043940 54 RTFGKFWRQFKMPMSADLEHVKAHL 78 (123)
Q Consensus 54 ~~~~~f~r~~~LP~~vd~~~i~A~~ 78 (123)
.+.|-.+++|+||++|+++-..|.|
T Consensus 132 lSvGGi~QQFSlpEnIqmSLF~a~F 156 (509)
T KOG2853|consen 132 LSVGGICQQFSLPENIQMSLFTAEF 156 (509)
T ss_pred eeecceeeecccchhhhhhhHHHHH
Confidence 4568899999999999988877766
No 105
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=29.90 E-value=60 Score=19.80 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=16.6
Q ss_pred eCCEEEEEEeccccccCCCCeEEEeee
Q 043940 79 ENGALRIKVPELAEEKRRQPKVISINE 105 (123)
Q Consensus 79 ~nGvL~I~~PK~~~~~~~~~~~I~I~~ 105 (123)
.+|.|++.+||+.-+ ...++++.
T Consensus 9 ~~g~l~~YvpKKDLE----E~Vv~~e~ 31 (67)
T TIGR02934 9 RAGELSAYVPKKDLE----EVIVSVEK 31 (67)
T ss_pred CCCCEEEEEECCcch----hheeeeec
Confidence 357899999999765 45566653
No 106
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=29.63 E-value=2.2e+02 Score=20.62 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=29.6
Q ss_pred CCCCCeEEEEecCcEEEEEEEEeccCC-ccccccCceEE---EEeeeccEEEEEEEcCCC
Q 043940 13 MKKDEVKIEVEENRVLRMSGERKSDDY-YKEGVEGEKWQ---RAERTFGKFWRQFKMPMS 68 (123)
Q Consensus 13 ~~~edi~I~i~~~~~L~I~g~~~~~~~-~~~~~~~~~~~---~~e~~~~~f~r~~~LP~~ 68 (123)
+.++.+. +.+ +.|+|++.+..... .........+. .....+|.|+-++++|..
T Consensus 35 ~~~~nv~--v~~-G~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 35 YRPENAY--VED-GNLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred CCCCCeE--EEC-CEEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 4556654 557 99999988765210 00001111122 123457899999999954
No 107
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=29.62 E-value=43 Score=21.14 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.3
Q ss_pred CCCCCeEEEEecCcEEEEEEEEec
Q 043940 13 MKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 13 ~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
|+.+.|.|.... +.|.|+|+.=.
T Consensus 41 y~~~~I~l~t~~-G~l~I~G~~L~ 63 (85)
T TIGR02856 41 FSPEEVKLNSTN-GKITIEGKNFV 63 (85)
T ss_pred ECCCEEEEEcCc-eEEEEEcccEE
Confidence 567788888888 99999988544
No 108
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=29.59 E-value=1.4e+02 Score=22.26 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=12.0
Q ss_pred EEEe-cCcEEEEEEEEec
Q 043940 20 IEVE-ENRVLRMSGERKS 36 (123)
Q Consensus 20 I~i~-~~~~L~I~g~~~~ 36 (123)
+.+. + +.|+|++.+..
T Consensus 48 ~~v~~d-G~L~I~a~~~~ 64 (259)
T cd02182 48 VQLSGN-GTLQITPLRDG 64 (259)
T ss_pred EEEcCC-CeEEEEEEecC
Confidence 4556 6 99999998763
No 109
>PRK10568 periplasmic protein; Provisional
Probab=29.52 E-value=92 Score=22.66 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.6
Q ss_pred cCCCCCCCeEEEEecCcEEEEEEEEec
Q 043940 10 IPVMKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 10 lPG~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
-++++..+|+|.+.+ |.++++|.-..
T Consensus 72 ~~~i~~~~I~V~v~~-G~V~L~G~V~s 97 (203)
T PRK10568 72 HDNIKSTDISVKTHQ-KVVTLSGFVES 97 (203)
T ss_pred CCCCCCCceEEEEEC-CEEEEEEEeCC
Confidence 367778899999999 99999999874
No 110
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=28.46 E-value=49 Score=20.98 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=18.5
Q ss_pred CCCCCeEEEEecCcEEEEEEEEec
Q 043940 13 MKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 13 ~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
|+.+.|.|.... |.|.|+|+.=.
T Consensus 22 fd~~~I~l~T~~-G~L~I~G~~L~ 44 (85)
T TIGR02892 22 FDDEEILLETVM-GFLTIKGQELK 44 (85)
T ss_pred ECCCEEEEEeCc-EEEEEEcceeE
Confidence 467888888888 99999998544
No 111
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=27.31 E-value=89 Score=22.44 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=21.9
Q ss_pred EEEEcCCCCCCCeEEEEecCcEEEEEEEE
Q 043940 6 IALDIPVMKKDEVKIEVEENRVLRMSGER 34 (123)
Q Consensus 6 i~~~lPG~~~edi~I~i~~~~~L~I~g~~ 34 (123)
|.+.+||+..+.+.++..+ +.|.=.|..
T Consensus 18 isIsvpgv~~~~v~~s~~g-gsl~~~g~~ 45 (181)
T PF12080_consen 18 ISISVPGVPSNKVPASATG-GSLSKSGGG 45 (181)
T ss_pred EEEEeCCCCccccEEEeeC-CEEEecCCC
Confidence 6789999999999988877 666555544
No 112
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.79 E-value=5.9 Score=24.19 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=10.2
Q ss_pred eeEEEeCCEEEE
Q 043940 74 VKAHLENGALRI 85 (123)
Q Consensus 74 i~A~~~nGvL~I 85 (123)
|.|.|+||||.=
T Consensus 7 IEaiYEnGVfKP 18 (67)
T COG2880 7 IEAIYENGVLKP 18 (67)
T ss_pred HHHHHhcccccc
Confidence 678899999974
No 113
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=25.85 E-value=2.4e+02 Score=19.79 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=27.8
Q ss_pred CCCCeEEEEecCcEEEEEEEEeccCCccccccCceEE--EEeeeccEEEEEEEcCCC
Q 043940 14 KKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQ--RAERTFGKFWRQFKMPMS 68 (123)
Q Consensus 14 ~~edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~--~~e~~~~~f~r~~~LP~~ 68 (123)
.++.+. +.+++.|+|++.+... ........+. .....+|.|+-++++|..
T Consensus 28 ~~~nv~--~~~~G~L~l~~~~~~~---~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNNVY--VENDGGLTLRTDRDQT---DGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccCEE--EeCCCeEEEEEEecCC---CCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 344444 4434789999886641 0001111111 234557899999999965
No 114
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=24.85 E-value=1.7e+02 Score=19.34 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 59 FWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 59 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
|.-.|.+|+. .+.....++||+|.++--
T Consensus 34 ~~in~~~~D~--~e~~~l~l~NgvL~~~~~ 61 (125)
T PF14864_consen 34 FTINFIFTDT--GEQYTLELRNGVLNYRKG 61 (125)
T ss_dssp EEEEEEETTT--TEEEEEEEETTEEEEEET
T ss_pred EEEEEEEcCC--CCeEEEEEECCEEEeecC
Confidence 6667888843 357788899999999653
No 115
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=24.82 E-value=1.8e+02 Score=21.73 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=22.3
Q ss_pred cCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccc
Q 043940 24 ENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEH 73 (123)
Q Consensus 24 ~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 73 (123)
.+|.|.|.|++.- .-..+..+.+ |.- +-=|.+|+.++
T Consensus 148 pNGnL~I~GeK~i-----~vN~~~e~I~-------lsG-vVRP~DI~~~N 184 (224)
T PRK12698 148 PNGNLVIRGEKWI-----SINNGDEFIR-------LTG-IVRSQDITPDN 184 (224)
T ss_pred CCCCEEEEEEEEE-----EECCCEEEEE-------EEE-EECHHHCCCCC
Confidence 3699999999987 2333334443 332 22467776665
No 116
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=24.10 E-value=2e+02 Score=20.48 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=15.8
Q ss_pred CCCCeEEEEecCcEEEEEEEEec
Q 043940 14 KKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 14 ~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
.+.++.+.... +.+.|+|..+.
T Consensus 129 ~~~~i~v~~~~-~~V~V~G~l~~ 150 (181)
T TIGR02761 129 YPKSVEWNPQE-GTVKVRGHLKR 150 (181)
T ss_pred EeeeEEEccCC-CEEEEEEEEEE
Confidence 34566666766 88888887665
No 117
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=23.59 E-value=2e+02 Score=21.68 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=22.0
Q ss_pred cCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccc
Q 043940 24 ENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEH 73 (123)
Q Consensus 24 ~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 73 (123)
.+|.|+|.|++.- .-..+..+.+ |.- +-=|.+|+.++
T Consensus 155 pNGNLvI~GeK~i-----~vN~~~e~ir-------lsG-iVRP~DI~~~N 191 (230)
T PRK12700 155 PNGNLQIAGEKQI-----AINRGSEYVR-------FSG-VVDPRSITGSN 191 (230)
T ss_pred CCCCEEEEEEEEE-----EECCCEEEEE-------EEE-EECHHHCCCCC
Confidence 3699999999987 2233334443 332 22466776655
No 118
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=23.25 E-value=2.2e+02 Score=19.45 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=27.4
Q ss_pred EEEEEEcCCCCCccceeEEEeCCEEEEEEeccccccCCCCeEEEee
Q 043940 59 FWRQFKMPMSADLEHVKAHLENGALRIKVPELAEEKRRQPKVISIN 104 (123)
Q Consensus 59 f~r~~~LP~~vd~~~i~A~~~nGvL~I~~PK~~~~~~~~~~~I~I~ 104 (123)
+.-++.-|+++ .+.++...+||.|.|...+.-.. ...-+|.|.
T Consensus 21 ~~v~v~~~~~l-~~~i~~~v~~g~L~I~~~~~~~~--~~~~~v~V~ 63 (181)
T PF10988_consen 21 PSVEVEADENL-LDRIKVEVKDGTLKISYKKNISG--SKPVKVRVT 63 (181)
T ss_dssp -EEEEEEEHHH-HCCEEEEEETTEEEEEE-SCCTC--TSTEEEEEE
T ss_pred cEEEEEEChhh-cceEEEEEECCEEEEEECCCcCC--CccEEEEEE
Confidence 34556666554 67888999999999999865443 123455555
No 119
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=23.02 E-value=78 Score=19.11 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=15.1
Q ss_pred eCCEEEEEEeccccccCCCCeEEEee
Q 043940 79 ENGALRIKVPELAEEKRRQPKVISIN 104 (123)
Q Consensus 79 ~nGvL~I~~PK~~~~~~~~~~~I~I~ 104 (123)
.+|.|.+.+||+.-+ ...++++
T Consensus 9 ~~G~ls~YVpKKDLE----E~Vv~~E 30 (64)
T PF06988_consen 9 GAGGLSAYVPKKDLE----EPVVSME 30 (64)
T ss_dssp SS--EEEEETTTTEE----EEEEEES
T ss_pred CCcCEEEEEeCCccc----cceeeee
Confidence 358999999999875 4666665
No 120
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=22.93 E-value=1.2e+02 Score=21.17 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=17.8
Q ss_pred EEcCCCCCccceeEEEeCCEEEEEEecc
Q 043940 63 FKMPMSADLEHVKAHLENGALRIKVPEL 90 (123)
Q Consensus 63 ~~LP~~vd~~~i~A~~~nGvL~I~~PK~ 90 (123)
|.=|+.|-+..-......|-+++++|+.
T Consensus 149 ~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 149 FENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 3455666666555555788889998863
No 121
>KOG4356 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.92 E-value=14 Score=29.06 Aligned_cols=66 Identities=18% Similarity=0.365 Sum_probs=41.9
Q ss_pred cEEEEEEEcCCCCC-CCeEEEEecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeC
Q 043940 2 TAHVIALDIPVMKK-DEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLEN 80 (123)
Q Consensus 2 d~~~i~~~lPG~~~-edi~I~i~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~n 80 (123)
+...+.++||+... -.+++.+.. ..|.|.+.+.. |.-...+|..++.+...|.|.-
T Consensus 240 ~~i~~e~~lp~~n~~~~~sl~v~e-~ri~i~~~~~~----------------------y~l~~~~~~~~~~~~~~a~Fd~ 296 (310)
T KOG4356|consen 240 DEIEAEIDLPNYNSMQEFSLLVGE-DRIVIETRKQG----------------------YRLNLNIPYIIDQDRAPALFDK 296 (310)
T ss_pred chhhhhhhcccchhhhccccccCC-cceEeccCccc----------------------eeeccccccccCcccchhhHHH
Confidence 44566677787765 233444443 44555533222 5556678888899999999853
Q ss_pred --CEEEEEEecc
Q 043940 81 --GALRIKVPEL 90 (123)
Q Consensus 81 --GvL~I~~PK~ 90 (123)
-.|.|+||-.
T Consensus 297 ~~~al~i~~P~~ 308 (310)
T KOG4356|consen 297 TTKALHITIPVV 308 (310)
T ss_pred HHHhhheecccc
Confidence 5788888854
No 122
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=22.86 E-value=92 Score=18.75 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=10.9
Q ss_pred EEEEEEcCCCCCCCeEEEEec
Q 043940 4 HVIALDIPVMKKDEVKIEVEE 24 (123)
Q Consensus 4 ~~i~~~lPG~~~edi~I~i~~ 24 (123)
|.|.+..+|+....+.|....
T Consensus 46 ~~l~is~~Gy~~~~~~i~~~~ 66 (88)
T PF13715_consen 46 YTLKISYIGYETKTITISVNS 66 (88)
T ss_pred eEEEEEEeCEEEEEEEEEecC
Confidence 455555555555555555543
No 123
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=22.83 E-value=77 Score=19.78 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.5
Q ss_pred ceeEEEeCCEEEEEEecc
Q 043940 73 HVKAHLENGALRIKVPEL 90 (123)
Q Consensus 73 ~i~A~~~nGvL~I~~PK~ 90 (123)
.|+|+|.+.++++++|..
T Consensus 2 ~vK~~~~~d~~r~~l~~~ 19 (82)
T cd06407 2 RVKATYGEEKIRFRLPPS 19 (82)
T ss_pred EEEEEeCCeEEEEEcCCC
Confidence 478999999999999954
No 124
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.74 E-value=2.1e+02 Score=21.40 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=11.3
Q ss_pred cCcEEEEEEEEec
Q 043940 24 ENRVLRMSGERKS 36 (123)
Q Consensus 24 ~~~~L~I~g~~~~ 36 (123)
.+|.|.|.|++.-
T Consensus 145 pNGnL~I~GeK~i 157 (221)
T PRK12407 145 PNGVLVIRGEKWL 157 (221)
T ss_pred CCCCEEEEEEEEE
Confidence 3699999999987
No 125
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=22.68 E-value=76 Score=22.49 Aligned_cols=22 Identities=5% Similarity=0.173 Sum_probs=14.1
Q ss_pred EEEEEEEcCCC-CCCCeEEEEec
Q 043940 3 AHVIALDIPVM-KKDEVKIEVEE 24 (123)
Q Consensus 3 ~~~i~~~lPG~-~~edi~I~i~~ 24 (123)
.|.|++.|.|. ..-.++|.|++
T Consensus 79 ~~tL~i~la~a~~~~~~~V~vNg 101 (167)
T PF14683_consen 79 TYTLRIALAGASAGGRLQVSVNG 101 (167)
T ss_dssp -EEEEEEEEEEETT-EEEEEETT
T ss_pred cEEEEEEeccccCCCCEEEEEcC
Confidence 56777777777 55567777766
No 126
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.52 E-value=2.2e+02 Score=21.44 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=11.3
Q ss_pred cCcEEEEEEEEec
Q 043940 24 ENRVLRMSGERKS 36 (123)
Q Consensus 24 ~~~~L~I~g~~~~ 36 (123)
.+|.|.|.|++.-
T Consensus 151 pNGnL~I~GeK~i 163 (226)
T PRK12697 151 PNGNLVVSGEKQM 163 (226)
T ss_pred CCCCEEEEEEEEE
Confidence 3699999999987
No 127
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.19 E-value=2.2e+02 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=22.0
Q ss_pred cCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccc
Q 043940 24 ENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEH 73 (123)
Q Consensus 24 ~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~ 73 (123)
.+|.|+|.|++.- ....+..|.+ |.-. -=|.+|+.++
T Consensus 154 pNGnL~I~GeK~v-----~vN~e~e~i~-------lsGv-VRP~DI~~~N 190 (230)
T PRK12701 154 ANGNMVVQGEKWV-----RINQGNEFVR-------LSGI-VRPQDIKADN 190 (230)
T ss_pred CCCCEEEEEEEEE-----EECCCeEEEE-------EEEE-ECHHHCCCCC
Confidence 3699999999987 2333334443 3322 2466776655
No 128
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=21.76 E-value=3.4e+02 Score=20.09 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=42.0
Q ss_pred ecCcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEEEe
Q 043940 23 EENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIKVP 88 (123)
Q Consensus 23 ~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~~P 88 (123)
++...++|.|.... ....++.++.-.+..|.-..-+...+. .-+-|+|.+..+.|.+.+-
T Consensus 121 DD~~L~vIIG~a~G-----TvS~GGnLy~~nl~tg~~~~ly~~~dk-kqQVis~e~~gd~L~Lki~ 180 (200)
T PF15525_consen 121 DDNNLAVIIGYAHG-----TVSKGGNLYKYNLNTGNLTELYEWKDK-KQQVISAEKNGDNLNLKIN 180 (200)
T ss_pred cCCcEEEEEccccc-----eEccCCeEEEEEccCCceeEeeecccc-ceeEEEEEEeCCEEEEEEE
Confidence 34466778887665 244566677767777777777777655 6666899999998877654
No 129
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=21.10 E-value=2.1e+02 Score=17.49 Aligned_cols=26 Identities=0% Similarity=0.000 Sum_probs=21.1
Q ss_pred cEEEEEEEcCCCCCCCeEEEEecCcE
Q 043940 2 TAHVIALDIPVMKKDEVKIEVEENRV 27 (123)
Q Consensus 2 d~~~i~~~lPG~~~edi~I~i~~~~~ 27 (123)
+...|.-.+-||-+.+|.|+...++.
T Consensus 15 ~~~~L~C~a~gF~P~~i~v~W~~~g~ 40 (93)
T cd07698 15 GSLTLSCHATGFYPRDIEVTWLRDGE 40 (93)
T ss_pred CcEEEEEEEEEEeCCCcEEEEEECCE
Confidence 35678888899999999999987454
No 130
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=20.89 E-value=4.2e+02 Score=20.82 Aligned_cols=31 Identities=10% Similarity=-0.048 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCCCeEE--------EEecCcEEEEEEEEec
Q 043940 5 VIALDIPVMKKDEVKI--------EVEENRVLRMSGERKS 36 (123)
Q Consensus 5 ~i~~~lPG~~~edi~I--------~i~~~~~L~I~g~~~~ 36 (123)
...+.++|....++++ .+.+ +.|.|++....
T Consensus 16 ~~e~~~~g~gn~E~q~Yt~~~~n~~v~d-G~L~I~~~~~~ 54 (330)
T cd08024 16 QHEVTAGGGGNGEFQWYTNDRSNSYVRD-GKLYIKPTLTA 54 (330)
T ss_pred eEEeccCCCCccceEEEeCCCcceEEeC-CeEEEEEEEeh
Confidence 3445556665444443 3566 99999987654
No 131
>PRK10568 periplasmic protein; Provisional
Probab=20.86 E-value=1.6e+02 Score=21.42 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.1
Q ss_pred CCCCCCCeEEEEecCcEEEEEEEEec
Q 043940 11 PVMKKDEVKIEVEENRVLRMSGERKS 36 (123)
Q Consensus 11 PG~~~edi~I~i~~~~~L~I~g~~~~ 36 (123)
+.++..+|+|.+.+ |.+++.|.-..
T Consensus 152 ~~v~~~~I~V~v~~-G~V~L~G~V~s 176 (203)
T PRK10568 152 DIVPSRKVKVETTD-GVVQLSGTVDS 176 (203)
T ss_pred CCCCcceeEEEEeC-cEEEEEEEECC
Confidence 45667789999999 99999999854
No 132
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=20.73 E-value=1e+02 Score=22.88 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=16.7
Q ss_pred cceeEEEeCCEEEEEEecccc
Q 043940 72 EHVKAHLENGALRIKVPELAE 92 (123)
Q Consensus 72 ~~i~A~~~nGvL~I~~PK~~~ 92 (123)
+.-.+.++||++.|++-|...
T Consensus 14 ~~~~VvldNGiVqVtls~p~G 34 (203)
T PF06045_consen 14 QGRQVVLDNGIVQVTLSKPGG 34 (203)
T ss_pred cCCEEEEECCEEEEEEcCCCc
Confidence 344588999999999998654
No 133
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=20.66 E-value=3.8e+02 Score=20.22 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=35.7
Q ss_pred EEcCCCCCCCeEEEEec-CcEEEEEEEEeccCCccccccCceEEEEeeeccEEEEEEEcCCCCCccceeEEEeCCEEEEE
Q 043940 8 LDIPVMKKDEVKIEVEE-NRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRIK 86 (123)
Q Consensus 8 ~~lPG~~~edi~I~i~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~ 86 (123)
-.|||+..+==-|++.. ++.|..... +...++.-.. .|..-|++.|...-|.+.|.. +.||.+.|+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d-----------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y-~g~~~~vl~ 81 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQD-----------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITY-LGNGRYVLS 81 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEET-----------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEEC-----------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE-ECCCEEEEE
Confidence 46999998754577763 366555422 1223333232 478889999998889999875 577766664
No 134
>PF10830 DUF2553: Protein of unknown function (DUF2553); InterPro: IPR020140 This entry contains proteins with no known function.
Probab=20.01 E-value=1.2e+02 Score=18.88 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.6
Q ss_pred ccceeEEEeCCEEEEEEecc
Q 043940 71 LEHVKAHLENGALRIKVPEL 90 (123)
Q Consensus 71 ~~~i~A~~~nGvL~I~~PK~ 90 (123)
++.|.++|+||-|.+.+-+.
T Consensus 7 Td~V~gkf~ng~l~LY~~~e 26 (76)
T PF10830_consen 7 TDKVTGKFKNGGLELYHDNE 26 (76)
T ss_pred ecceEEEecCCcEEEEeccc
Confidence 46799999999999887664
Done!