RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043940
(123 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 101 bits (254), Expect = 5e-29
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
Query: 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
P AHV D+P +KK+EVK+EVE+ VL +SGER + + + +KW R ER+ GKF
Sbjct: 52 PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKE----KEDKNDKWHRVERSSGKFV 107
Query: 61 RQFKMPMSADLEHVKAHLENGALRIKVPELAEEKRRQPKVISIN 104
R+F++ A +E VKA LENG L + VP+ AE K+ + K I I+
Sbjct: 108 RRFRLLEDAKVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 89.5 bits (223), Expect = 8e-25
Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
V+ D+P + ++++++++ +L + GERKS+ E E++ R ER +G F
Sbjct: 13 VNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSE----SSTETERFSRIERRYGSFH 67
Query: 61 RQFKMPMSADLEHVKAHLENGALRIKVPELAE 92
R+F +P SAD + + A NG L I++P+
Sbjct: 68 RRFALPDSADADGITAAGRNGVLEIRIPKRPA 99
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 82.5 bits (204), Expect = 3e-21
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
+ +P + K+++ + + L + +R + +
Sbjct: 65 DQHIKVIAWLPGVNKEDIILNAVGD-TLEIRAKRSPL---MITESERIIYSEIPEEEEIY 120
Query: 61 RQFKMPMSADLEHVKAHLENGALRIKVPELAEEKRRQPKVISI 103
R K+P + E+ A ENG L + +P+ K I+I
Sbjct: 121 RTIKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 78.4 bits (194), Expect = 3e-20
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 9/97 (9%)
Query: 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
V+ D+ K+++K V L + ER+ + + +
Sbjct: 33 GGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITE--------PGVKYLTQRPKYVR 84
Query: 61 RQFKMPMSADLE-HVKAHLENGALRIKVPELAEEKRR 96
+ ++P + + + ENG L I++P +
Sbjct: 85 KVIRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 52.6 bits (126), Expect = 8e-10
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
+ LD+ +E+K++V + + + G+ + E+ +F
Sbjct: 72 KDRFSVNLDVKHFSPEELKVKVLGDV-IEVHGKHE-----------ERQDEHGFISREFH 119
Query: 61 RQFKMPMSADLEHVKAHL-ENGALRIKVPELAEEKRRQPKVISINEEPVGNSSGEAIK 117
R++++P D + + L +G L + P + I I E + K
Sbjct: 120 RKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSG--PERTIPITREEKPAVTAAPKK 175
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 50.5 bits (121), Expect = 1e-09
Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 5 VIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFK 64
+ LD+ +E+ ++V + + + + ++ R +F R+++
Sbjct: 14 SVLLDVKHFSPEEISVKVVGDH-VEVHARHEERP--------DEHGFIAR---EFHRRYR 61
Query: 65 MPMSADLEHVKAHL-ENGALRIKVP-ELAEEKRRQPKVI 101
+P D V + L G L I+ A+ P
Sbjct: 62 LPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 48.5 bits (116), Expect = 5e-09
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 3 AHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERT---FGKF 59
++LD+ DE+ ++ ++ V + G+ R + F
Sbjct: 8 RWRVSLDVNHFAPDELTVKTKDGVVE---------------ITGKHAARQDEHGYISRCF 52
Query: 60 WRQFKMPMSADLEHVKAHL-ENGALRIKVP 88
R++ +P D V + L G L ++ P
Sbjct: 53 TRKYTLPPGVDPTQVSSSLSPEGTLTVEAP 82
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 48.6 bits (116), Expect = 6e-09
Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 13/94 (13%)
Query: 5 VIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFK 64
+ LD+ +E+K++V + V+ + G+ + E+ +F R+++
Sbjct: 9 SVNLDVKHFSPEELKVKVLGD-VIEVHGKHE-----------ERQDEHGFISREFHRKYR 56
Query: 65 MPMSADLEHVKAHL-ENGALRIKVPELAEEKRRQ 97
+P D + + + +G L + P +
Sbjct: 57 IPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 48.7 bits (116), Expect = 7e-09
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 5 VIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFK 64
VI LD+ +++ ++V+E+ V + G+ E+ +F R+++
Sbjct: 15 VIFLDVKHFSPEDLTVKVQEDFVE-IHGKHN-----------ERQDDHGYISREFHRRYR 62
Query: 65 MPMSADLEHVKAHL-ENGALRIKVP--ELAEEKRRQPKVISIN 104
+P + D + L +G L P + + I ++
Sbjct: 63 LPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 50.6 bits (120), Expect = 1e-08
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 11 PVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSAD 70
P +VK+ + N+V + G E + + +F++ F P D
Sbjct: 243 PHFAPKDVKVWAKGNKVY-VHGVTGK--------EEKTENASHSEHREFYKAFVTPEVVD 293
Query: 71 LEHVKAHLENGALRIKVP 88
+A + +G + ++ P
Sbjct: 294 ASKTQAEIVDGLMVVEAP 311
Score = 41.4 bits (96), Expect = 2e-05
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 5 VIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGK--FWRQ 62
+ ++ K +E+ I+ ++N+++ V +K R
Sbjct: 115 KVYFNVKNFKAEEITIKADKNKLV---------------VRAQKSVACGDAAMSESVGRS 159
Query: 63 FKMPMSADLEHVKAHL-ENGALRIKVPELAEEKRRQP 98
+P S D H++A + + L I+ P +
Sbjct: 160 IPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIK 196
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.40
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 22/48 (45%)
Query: 72 EHVKAHLENGALRIKVPELAEEKRRQPKVISINEEPVGNSSGEAIKAT 119
+ +K L+ +L++ + A P + AIKAT
Sbjct: 20 QALK-KLQA-SLKLYADDSA------PAL--------------AIKAT 45
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 64 KMPMSADLEHVKAHL 78
++ S LE V+ HL
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
>3naj_A Galectin-8; sugar binding protein; HET: GAL BGC; 2.80A {Homo
sapiens} PDB: 3ojb_A
Length = 291
Score = 25.9 bits (56), Expect = 4.5
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 11/65 (16%)
Query: 45 EGEKWQRAERTFGKFW----RQFKMPMSADLEHVKAHLENGALRIKVPELAEEKRRQPKV 100
E W ER F F+M + D+ K + NG E K R ++
Sbjct: 219 LQESWGEEERNITSFPFSPGMYFEMIIYCDVREFKVAV-NGV------HSLEYKHRFKEL 271
Query: 101 ISINE 105
SI+
Sbjct: 272 SSIDT 276
>1gxy_A T-cell ECTO-ADP-ribosyltransferase 2; immuno-regulation; 1.71A
{Rattus norvegicus} SCOP: d.166.1.3 PDB: 1gxz_A* 1gy0_A
1og1_A* 1og4_A* 1og3_A*
Length = 226
Score = 25.4 bits (55), Expect = 5.2
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 33 ERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKA 76
+ + K W+ A++ + P + H A
Sbjct: 36 DFNMNAKLKVA-----WEEAKKRWNNIKPSRSYPKGFNDFHGTA 74
>2a90_A Deltex protein; WWE domain, metal binding protein; 2.15A
{Drosophila melanogaster} SCOP: d.289.1.1 d.289.1.1
Length = 240
Score = 25.0 bits (53), Expect = 9.3
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 1 PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQ--RAERTFGK 58
P+ +++ M + E + E + +L + R +G KW+
Sbjct: 65 PSLEQYYVNVRTMTQ-ESEAETAGSGLLTIGVRRMFYAPSSPAGKGTKWEWSGGSADSNN 123
Query: 59 FWRQFKMPMSADLEH 73
WR + M + + +E
Sbjct: 124 DWRPYNMHVQSIIED 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.130 0.365
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,898,482
Number of extensions: 106883
Number of successful extensions: 268
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 36
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)