RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043940
         (123 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 71.7 bits (175), Expect = 1e-17
 Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 5/104 (4%)

Query: 1   PTAHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
           P AHV   D+P +KK+EVK+EVE+  VL +SGER  +   K     +KW R ER+ GKF 
Sbjct: 51  PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKN----DKWHRVERSSGKFV 106

Query: 61  RQFKMPMSADLEHVKAHLENGALRIKVPELAEEKRRQPKVISIN 104
           R+F++   A +E VKA LENG L + VP+ AE K+ + K I I+
Sbjct: 107 RRFRLLEDAKVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 56.2 bits (135), Expect = 5e-12
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 7/101 (6%)

Query: 3   AHVIALDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQ 62
              +   +P + K+++ +    + +   +          E               + +R 
Sbjct: 21  HIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESER----IIYSEIPEEEEIYRT 76

Query: 63  FKMPMSADLEHVKAHLENGALRIKVPELAEEKRRQPKVISI 103
            K+P +   E+  A  ENG L + +P+         K I+I
Sbjct: 77  IKLPATVKEENASAKFENGVLSVILPKAESSI---KKGINI 114


>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4
          [TaxId: 10665]}
          Length = 282

 Score = 27.2 bits (59), Expect = 0.58
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 6/53 (11%)

Query: 8  LDIPVMKKDEVKIEVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFW 60
          +DI V   D   + ++       S   +  D++    +G ++    R     W
Sbjct: 1  MDIKVHFHDFSHVRID----CEESTFHELRDFFSFEADGYRFNPRFR--YGNW 47


>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
           (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 152

 Score = 24.0 bits (51), Expect = 5.5
 Identities = 9/62 (14%), Positives = 21/62 (33%)

Query: 26  RVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKAHLENGALRI 85
            +L  +      D ++  V    +QR                 + +E   +++ + A+ I
Sbjct: 84  MLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFI 143

Query: 86  KV 87
           K 
Sbjct: 144 KA 145


>d3pmga2 c.84.1.1 (A:191-303) Phosphoglucomutase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 113

 Score = 23.6 bits (50), Expect = 5.6
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 80  NGALRIKVPELAEEKRRQPKVISINEEPVGNSSG 113
           +G +   V ++  E+   P   ++N  P+ +  G
Sbjct: 35  HGVVGPYVKKILCEELGAPANSAVNCVPLEDFGG 68


>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 298

 Score = 23.8 bits (51), Expect = 6.7
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 70  DLEHVKAHLENGALRIKVPELAEEKRRQP 98
            L+++   L++   +++VPE    K R+ 
Sbjct: 263 TLKNIYESLKDMKYKVEVPEEIARKARKA 291


>d1gxya_ d.166.1.3 (A:) Eukaryotic mono-ADP-ribosyltransferase
          ART2.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 223

 Score = 23.7 bits (51), Expect = 6.8
 Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 21 EVEENRVLRMSGERKSDDYYKEGVEGEKWQRAERTFGKFWRQFKMPMSADLEHVKA 76
          ++EE   L +  +   +   K       W+ A++ +         P   +  H  A
Sbjct: 21 KMEEKAPLLLQEDFNMNAKLKVA-----WEEAKKRWNNIKPSRSYPKGFNDFHGTA 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,349
Number of extensions: 19901
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 11
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)