BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043941
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q9B|A Chain A, Crystal Structure Analysis Of Hev B 6.02 (Hevein) At 1.5
Angstroms Resolution
pdb|1HEV|A Chain A, Hevein: The Nmr Assignment And An Assessment Of
Solution- State Folding For The Agglutinin-Toxin Motif
Length = 43
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+QCGRQ + CPNNLCCSQ+G+CGST +YCSP NCQ NC
Sbjct: 1 EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYCSPDHNCQSNC 41
>pdb|1WKX|A Chain A, Crystal Structure Of A Hev B 6.02 Isoallergen
Length = 43
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+QCGRQ + CP+NLCCSQ+G+CGST +YCSP NCQ NC
Sbjct: 1 EQCGRQAGGKLCPDNLCCSQWGWCGSTDEYCSPDHNCQSNC 41
>pdb|1T0W|A Chain A, 25 Nmr Structures Of Truncated Hevein Of 32 Aa
(Hevein-32) Complex With N,N,N-Triacetylglucosamina
Length = 33
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCS 61
+QCGRQ + CPNNLCCSQ+G+CGST +YCS
Sbjct: 1 EQCGRQAGGKLCPNNLCCSQWGWCGSTDEYCS 32
>pdb|1WGT|A Chain A, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1WGT|B Chain B, X-Ray Structure Of Wheat Germ Agglutinin Isolectin 3
pdb|1K7T|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7T|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GAL Complex
pdb|1K7U|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7U|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,4GLCNAC Complex
pdb|1K7V|A Chain A, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
pdb|1K7V|B Chain B, Crystal Structure Analysis Of
Crosslinked-Wga3GLCNACBETA1,6GALBETA1, 4glc
Length = 186
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFN-CW 71
+CG QG CPNNLCCSQ+G+CG DYC + CQ CW
Sbjct: 2 RCGEQGSGMECPNNLCCSQYGYCGMGGDYC--GKGCQNGACW 41
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQ 67
+CG Q + CPNNLCCSQ+G+CG ++C E CQ
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGYCGLGSEFC--GEGCQ 122
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPS 63
+++CG Q + CPNN CCSQ+G CG +YC
Sbjct: 43 SKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAG 77
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 32 CGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPS 63
CG+ R C NN CCS++G CG YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAG 163
>pdb|2WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|2WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|9WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
Length = 171
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFN-CW 71
+CG QG + CPNNLCCSQ+G+CG DYC + CQ CW
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYC--GKGCQNGACW 41
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCS 61
+CG Q + CPNNLCCSQ+GFCG ++C
Sbjct: 88 KCGSQSGGKLCPNNLCCSQWGFCGLGSEFCG 118
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCS 61
+++CG Q CPNN CCSQ+G CG +YC
Sbjct: 43 SKRCGSQAGGATCPNNHCCSQYGHCGFGAEYCG 75
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 32 CGRQGLDRPCPNNLCCSQFGFCGSTYDYCS 61
CG+ R C NN CCS++G CG YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYCG 161
>pdb|1WGC|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|1WGC|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|7WGA|A Chain A, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|7WGA|B Chain B, 2.2 Angstroms Resolution Structure Analysis Of Two
Refined N- Acetylneuraminyllactose-Wheat Germ
Agglutinin Isolectin Complexes
pdb|2CWG|A Chain A, Crystallographic Refinement And Structure Analysis Of
The Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2CWG|B Chain B, Crystallographic Refinement And Structure Analysis Of
The Complex Of Wheat Germ Agglutinin With A Bivalent
Sialoglycopeptide From Glycophorin A
pdb|2UVO|A Chain A, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|B Chain B, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|E Chain E, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2UVO|F Chain F, High Resolution Crystal Structure Of Wheat Germ
Agglutinin In Complex With N-Acetyl-D-Glucosamine
pdb|2X3T|A Chain A, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|2X3T|B Chain B, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|2X3T|C Chain C, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|2X3T|D Chain D, Glutaraldehyde-Crosslinked Wheat Germ Agglutinin
Isolectin 1 Crystal Soaked With A Synthetic
Glycopeptide
pdb|4AML|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1
In Complex With Glycosylurethan
pdb|4AML|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 1
In Complex With Glycosylurethan
Length = 171
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFN-CW 71
+CG QG + CPNNLCCSQ+G+CG DYC + CQ CW
Sbjct: 2 RCGEQGSNMECPNNLCCSQYGYCGMGGDYC--GKGCQNGACW 41
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCS 61
+CG Q + CPNNLCCSQ+GFCG ++C
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGFCGLGSEFCG 118
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPS 63
+++CG Q C NN CCSQ+G+CG +YC
Sbjct: 43 SKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAG 77
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 32 CGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPS 63
CG+ R C NN CCS++G CG YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAG 163
>pdb|2X52|A Chain A, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3
In Complex With A Synthetic Divalent Carbohydrate
Ligand
pdb|2X52|B Chain B, Crystal Structure Of Wheat Germ Agglutinin Isolectin 3
In Complex With A Synthetic Divalent Carbohydrate
Ligand
Length = 171
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFN-CW 71
+CG QG CPNNLCCSQ+G+CG DYC + CQ CW
Sbjct: 2 RCGEQGSGMECPNNLCCSQYGYCGMGGDYC--GKGCQNGACW 41
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQ 67
+CG Q + CPNNLCCSQ+G+CG ++C E CQ
Sbjct: 88 KCGSQAGGKLCPNNLCCSQWGYCGLGSEFC--GEGCQ 122
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPS 63
+++CG Q + CPNN CCSQ+G CG +YC
Sbjct: 43 SKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAG 77
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 32 CGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPS 63
CG+ R C NN CCS++G CG YC
Sbjct: 132 CGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAG 163
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+QCG Q CPN LCCS++G+CG+T D+C + CQ C
Sbjct: 2 EQCGAQAGGARCPNCLCCSRWGWCGTTSDFC--GDGCQSQC 40
>pdb|2LB7|A Chain A, Hevein-Type Antifungal Peptide With A Unique 10-Cysteine
Motif
Length = 44
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
AQ+CG Q CPN LCC ++GFCGS YC +CQ C
Sbjct: 1 AQRCGDQARGAKCPNCLCCGKYGFCGSGDAYCGAG-SCQSQC 41
>pdb|1ULN|A Chain A, Crystal Structure Of Pokeweed Lectin-D1
Length = 84
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
A +CG + + CPN CCSQ+G+CG+T +YC + CQ C
Sbjct: 1 APECGERASGKRCPNGKCCSQWGYCGTTDNYC--GQGCQSQC 40
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+CGR R C ++CCS++G+CG + D+C + CQ C
Sbjct: 44 RCGRDFGGRLCEEDMCCSKYGWCGYSDDHC--EDGCQSQC 81
>pdb|1ULM|A Chain A, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1ULM|B Chain B, Crystal Structure Of Pokeweed Lectin-D2 Complexed With
Tri-N- Acetylchitotriose
pdb|1UHA|A Chain A, Crystal Structure Of Pokeweed Lectin-D2
Length = 82
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
A +CG + + CPN CCSQ+G+CG+T +YC + CQ C
Sbjct: 1 APECGERASGKRCPNGKCCSQWGYCGTTDNYC--GQGCQSQC 40
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+CGR R C ++CCS++G+CG + D+C + CQ C
Sbjct: 44 RCGRDFGGRLCEEDMCCSKYGWCGYSDDHC--EDGCQSQC 81
>pdb|1ULK|A Chain A, Crystal Structure Of Pokeweed Lectin-C
pdb|1ULK|B Chain B, Crystal Structure Of Pokeweed Lectin-C
Length = 126
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 32 CGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
CG + R CP+ CCSQ+G+CG+T +YC + CQ C
Sbjct: 4 CGVRASGRVCPDGYCCSQWGYCGTTEEYC--GKGCQSQC 40
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+CG++ + C + LCCSQ+G+CG++ +C E CQ C
Sbjct: 44 RCGKEFGGKECHDELCCSQYGWCGNSDGHC--GEGCQSQC 81
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+CG+ R C ++CCSQ+G+CG T D+C + CQ C
Sbjct: 85 RCGKDFGGRLCTEDMCCSQYGWCGLTDDHC--EDGCQSQC 122
>pdb|1EN2|A Chain A, Uda Tetrasaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
pdb|1ENM|A Chain A, Uda Trisaccharide Complex. Crystal Structure Of Urtica
Dioica Agglutinin, A Superantigen Presented By Mhc
Molecules Of Class I And Class Ii
Length = 91
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSEN-CQFNC 70
+CG + PC + CCS G+CG DYCS N CQ+ C
Sbjct: 50 HRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGGSNKCQYRC 91
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 31 QCGRQGLDRP-CPNNL--CCSQFGFCGSTYDYCSPSENCQFNCW 71
+CG QG CP L CCS +G+CG + YC C+ CW
Sbjct: 2 RCGSQGGGSGTCPGALRWCCSIWGWCGDSEPYC--GRTCENKCW 43
>pdb|1IQB|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
pdb|1IQB|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
I
Length = 89
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+CG + PC + CCS G+CG DYCS S+ CQ+ C
Sbjct: 47 HRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGSK-CQYRC 86
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCW 71
+CG QG CP CCS +G+CG + YC C+ CW
Sbjct: 2 RCGSQGGGGTCPALWCCSIWGWCGDSEPYC--GRTCENKCW 40
>pdb|1EIS|A Chain A, Uda Uncomplexed Form. Crystal Structure Of Urtica Dioica
Agglutinin, A Superantigen Presented By Mhc Molecules
Of Class I And Class Ii
Length = 87
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+CG + PC + CCS G+CG DYCS NCQ+ C
Sbjct: 48 HRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCS-GGNCQYRC 87
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 31 QCGRQGLDRP-CPNNLCCSQFGFCGSTYDYCSPSENCQFNCW 71
+CG QG CP CCS +G+CG + YC C+ CW
Sbjct: 2 RCGSQGGGSGTCPGLRCCSIWGWCGDSEPYC--GRTCENKCW 41
>pdb|1EHD|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi
pdb|1EHH|A Chain A, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
pdb|1EHH|B Chain B, Crystal Structure Of Urtica Dioica Agglutinin Isolectin
Vi Complex With Tri-N-Acetylchitotriose
Length = 89
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCW 71
+CG QG CP CCS +G+CG + YC C+ CW
Sbjct: 2 RCGSQGGGATCPGLRCCSIWGWCGDSEPYC--GRTCENKCW 40
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
+CG + PC + CCS G+CG DYCS + CQ+ C
Sbjct: 47 HRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGGK-CQYRC 86
>pdb|1MMC|A Chain A, 1h Nmr Study Of The Solution Structure Of Ac-Amp2
Length = 30
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 41 CPNNLCCSQFGFCGSTYDYCS 61
CP+ +CCSQFG+CG YC
Sbjct: 9 CPSGMCCSQFGYCGKGPKYCG 29
>pdb|1P9Z|A Chain A, The Solution Structure Of Antifungal Peptide Distinct
With A Five-Disulfide Motif From Eucommia Ulmoides
Oliver
pdb|1P9G|A Chain A, Crystal Structure Of A Novel Antifungal Protein Distinct
With Five Disulfide Bridges From Ecommia Ulmoides
Oliver At Atomic Resolution
Length = 41
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 39 RPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70
RPC LCCS +G+CGS YC + NC+ C
Sbjct: 9 RPCNAGLCCSIYGYCGSGAAYCG-AGNCRCQC 39
>pdb|1ZUV|A Chain A, 24 Nmr Structures Of Acamp2-Like Peptide With
Phenylalanine 18 Mutated To Tryptophan
Length = 30
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 41 CPNNLCCSQFGFCGSTYDYCS 61
CP+ +CCSQ+G+CG YC
Sbjct: 9 CPSGMCCSQWGYCGKGPKYCG 29
>pdb|1ZWU|A Chain A, 30 Nmr Structures Of Acamp2-Like Peptide With Non
Natural Beta-(2- Naphthyl)-Alanine Residue
Length = 30
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 41 CPNNLCCSQFGFCGSTYDYCS 61
CP+ +CCSQ G+CG YC
Sbjct: 9 CPSGMCCSQXGYCGKGPKYCG 29
>pdb|1ZNT|A Chain A, 18 Nmr Structures Of Acamp2-Like Peptide With Non
Natural Fluoroaromatic Residue (Acamp2f18pffY20PFF)
COMPLEX WITH N,N,N- Triacetylchitotriose
Length = 31
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 41 CPNNLCCSQFGFCGSTYDYCS 61
CP+ +CCSQ G CG YC
Sbjct: 9 CPSGMCCSQXGXCGKGPKYCG 29
>pdb|2KUS|A Chain A, Spatial Structure Of Antimicrobial Peptide Sm-Amp-1.1a
Length = 35
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 45 LCCSQFGFCGSTYDYCS 61
LCCSQ+G+CGS YC+
Sbjct: 18 LCCSQYGYCGSGPKYCA 34
>pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 1 MTMRKFSLLLCIYVVLIVSLTMVAYTVKAQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYC 60
MT+++ +C+ V + T +V Q G G PC N CC+ F G +
Sbjct: 82 MTLKRTLQSICLLTVHPNTTT----SVILQVVGNDGSLLPCAINACCAALVFAGIPLKHL 137
Query: 61 SPSENC 66
+ + C
Sbjct: 138 AVAIGC 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.138 0.488
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,148,361
Number of Sequences: 62578
Number of extensions: 71201
Number of successful extensions: 179
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 45
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)