Query 043941
Match_columns 78
No_of_seqs 111 out of 750
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00187 Chitin_bind_1: Chitin 99.6 1.5E-17 3.3E-22 94.4 -0.7 40 29-70 1-40 (40)
2 smart00270 ChtBD1 Chitin bindi 99.6 1.3E-15 2.9E-20 85.7 2.2 38 31-70 1-38 (38)
3 cd00035 ChtBD1 Chitin binding 99.4 6.7E-14 1.5E-18 79.0 2.9 40 31-72 1-40 (40)
4 cd06918 ChtBD1_like Domain obs 97.8 1.8E-05 4E-10 46.9 3.2 39 28-67 3-49 (51)
5 KOG4742 Predicted chitinase [G 90.9 0.67 1.5E-05 35.8 5.4 37 17-73 16-53 (286)
6 PF07172 GRP: Glycine rich pro 89.0 0.63 1.4E-05 30.3 3.4 24 1-24 1-25 (95)
7 PF06607 Prokineticin: Prokine 79.6 0.7 1.5E-05 30.4 0.4 25 25-52 19-43 (97)
8 PF02950 Conotoxin: Conotoxin; 57.6 6.4 0.00014 23.3 1.2 6 44-49 62-67 (75)
9 PF04202 Mfp-3: Foot protein 3 57.6 6.2 0.00014 24.9 1.2 16 3-18 1-16 (71)
10 PF07172 GRP: Glycine rich pro 55.5 13 0.00028 24.1 2.5 17 9-25 6-22 (95)
11 PRK15205 long polar fimbrial p 53.4 9.6 0.00021 26.2 1.7 14 1-14 1-14 (176)
12 TIGR00247 conserved hypothetic 49.7 23 0.00049 27.2 3.4 19 3-21 1-19 (342)
13 PF07127 Nodulin_late: Late no 49.4 30 0.00065 19.8 3.1 13 29-44 27-39 (54)
14 PF06873 SerH: Cell surface im 39.5 29 0.00064 28.0 2.7 7 28-34 26-32 (403)
15 PRK03577 acid shock protein pr 39.3 40 0.00086 22.6 2.9 24 3-26 1-24 (102)
16 PRK12750 cpxP periplasmic repr 38.4 44 0.00095 23.5 3.2 18 1-18 1-18 (170)
17 KOG4742 Predicted chitinase [G 37.9 76 0.0017 24.7 4.6 46 3-50 7-53 (286)
18 TIGR01165 cbiN cobalt transpor 36.8 52 0.0011 21.6 3.1 7 1-7 1-7 (91)
19 PF12276 DUF3617: Protein of u 36.2 22 0.00048 23.6 1.3 14 3-16 1-14 (162)
20 PRK13884 conjugal transfer pep 35.2 63 0.0014 22.7 3.5 15 2-16 4-18 (178)
21 PF15183 MRAP: Melanocortin-2 35.1 78 0.0017 20.8 3.7 20 5-24 41-60 (90)
22 PF12729 4HB_MCP_1: Four helix 35.1 79 0.0017 19.7 3.7 7 1-7 2-8 (181)
23 PRK10780 periplasmic chaperone 34.4 58 0.0013 22.2 3.2 14 3-16 1-14 (165)
24 PRK02710 plastocyanin; Provisi 33.8 47 0.001 21.5 2.6 18 4-21 3-20 (119)
25 PRK15307 major fimbrial protei 33.1 43 0.00093 23.6 2.4 8 1-8 1-8 (201)
26 PF09125 COX2-transmemb: Cytoc 31.7 1E+02 0.0022 17.3 3.6 12 10-21 21-32 (38)
27 PRK02898 cobalt transport prot 30.4 80 0.0017 21.0 3.2 19 1-19 1-19 (100)
28 COG5510 Predicted small secret 29.9 87 0.0019 18.1 2.9 12 3-14 2-13 (44)
29 PRK15300 fimbrial protein StiA 28.6 36 0.00078 23.3 1.4 16 1-16 1-16 (179)
30 PF12071 DUF3551: Protein of u 26.6 61 0.0013 20.5 2.1 7 3-9 1-7 (82)
31 PF12869 tRNA_anti-like: tRNA_ 25.4 23 0.00051 22.9 0.0 7 1-7 1-8 (144)
32 PRK11372 lysozyme inhibitor; P 25.3 71 0.0015 21.0 2.3 11 1-11 1-11 (109)
33 PF06143 Baculo_11_kDa: Baculo 24.2 1.5E+02 0.0032 19.2 3.5 19 4-22 34-52 (84)
34 PF02553 CbiN: Cobalt transpor 23.9 80 0.0017 19.8 2.2 17 3-19 1-17 (74)
35 PF10795 DUF2607: Protein of u 23.2 1.4E+02 0.0031 19.6 3.4 20 4-23 13-32 (99)
36 PF06316 Ail_Lom: Enterobacter 23.2 82 0.0018 23.3 2.5 10 3-12 1-10 (199)
37 PF00526 Dicty_CTDC: Dictyoste 23.0 42 0.00091 16.8 0.7 13 56-68 4-16 (24)
38 PRK09738 small toxic polypepti 22.8 60 0.0013 19.2 1.4 15 1-15 1-15 (52)
39 PLN02995 Probable pectinestera 22.4 83 0.0018 26.1 2.6 9 1-9 3-11 (539)
40 KOG4154 Arginine-rich protein 22.4 71 0.0015 23.0 2.0 18 1-18 1-18 (178)
41 PRK06287 cobalt transport prot 22.0 1.5E+02 0.0033 19.4 3.4 9 1-9 2-10 (107)
42 PF13124 DUF3963: Protein of u 22.0 1.5E+02 0.0033 16.6 2.9 16 4-19 21-36 (40)
43 COG3678 CpxP P pilus assembly/ 21.8 1.6E+02 0.0036 20.6 3.7 25 3-27 2-28 (160)
44 PF03823 Neurokinin_B: Neuroki 21.8 1.4E+02 0.003 18.2 2.8 17 3-19 1-17 (59)
45 PF11714 Inhibitor_I53: Thromb 21.8 1.1E+02 0.0024 19.5 2.5 15 3-17 1-15 (78)
46 PF15145 DUF4577: Domain of un 21.0 82 0.0018 21.8 2.0 18 6-23 61-78 (128)
47 smart00254 ShKT ShK toxin doma 20.8 24 0.00053 17.9 -0.5 23 46-71 7-31 (33)
48 PF15048 OSTbeta: Organic solu 20.8 1.3E+02 0.0028 20.8 3.0 23 5-27 36-58 (125)
49 PRK13838 conjugal transfer pil 20.0 1.5E+02 0.0033 20.8 3.3 14 1-14 1-14 (176)
No 1
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=99.64 E-value=1.5e-17 Score=94.42 Aligned_cols=40 Identities=60% Similarity=1.404 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCC
Q 043941 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70 (78)
Q Consensus 29 ~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C 70 (78)
+++||++.++.+||.+.|||+|||||+|+|||++ +||++|
T Consensus 1 a~~CG~~~~~~~Cp~~~CCS~~G~CG~t~~yCg~--gCQ~~C 40 (40)
T PF00187_consen 1 AQRCGRQAGGATCPNGLCCSQYGYCGTTSDYCGA--GCQSQC 40 (40)
T ss_dssp -CBSSGGGTTBBSGGG-EEETTSBEESSHHHHST--TEESST
T ss_pred CcccccCcCCCcCCCCCccCCCCcccCChhhhhc--ccccCC
Confidence 4799999999999999999999999999999998 999887
No 2
>smart00270 ChtBD1 Chitin binding domain.
Probab=99.56 E-value=1.3e-15 Score=85.71 Aligned_cols=38 Identities=58% Similarity=1.390 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCC
Q 043941 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNC 70 (78)
Q Consensus 31 ~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C 70 (78)
+||++.++.+|+.+.|||+|||||+++|||+. +||++|
T Consensus 1 ~CG~~~g~~~C~~~~CCS~~G~CG~t~~yCg~--gCqs~c 38 (38)
T smart00270 1 RCGSQAGGKVCPNNLCCSQFGYCGSGDEYCGK--GCQSQC 38 (38)
T ss_pred CCcCCCCCCcCCCCCccCCCcCccCCHHHHhc--cccCCC
Confidence 69999999999999999999999999999998 999987
No 3
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K.lactis killer toxin alpha subunit, occurs singly or multiply
Probab=99.44 E-value=6.7e-14 Score=78.99 Aligned_cols=40 Identities=58% Similarity=1.415 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCCC
Q 043941 31 QCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCWP 72 (78)
Q Consensus 31 ~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~~ 72 (78)
+||++.++.+|+.+.|||+|||||++.+||+. +||++|+.
T Consensus 1 ~Cg~~~~~~~C~~~~CCS~~G~CG~t~~~Cg~--gcq~~c~~ 40 (40)
T cd00035 1 NCGRQAGGGGCPPGLCCSQFGYCGTTDDYCGR--GCQSGCWS 40 (40)
T ss_pred CCCccCCCCcCCCCccccccccccCCcccccc--ccccccCc
Confidence 69999999999999999999999999999998 99999963
No 4
>cd06918 ChtBD1_like Domain observed in several metazoan proteins. The pattern of conserved cysteine residues resembles that of chitin binding domains found in plants and fungi.
Probab=97.85 E-value=1.8e-05 Score=46.86 Aligned_cols=39 Identities=33% Similarity=0.776 Sum_probs=27.6
Q ss_pred cCCCCCCCCC-----CCCCCC---CccccccceecCCCCccCCCCCCC
Q 043941 28 KAQQCGRQGL-----DRPCPN---NLCCSQFGFCGSTYDYCSPSENCQ 67 (78)
Q Consensus 28 ~~~~CG~~~g-----~~~Cp~---~~CCS~~G~CG~t~dyCg~~~gCq 67 (78)
.+.+||+.+. ...|.. ..|||.+||||.|.+||.=. +|.
T Consensus 3 ~dgrCG~~~p~~~g~~~~CdPdg~~pCCS~~gwCG~t~~hC~C~-~Cv 49 (51)
T cd06918 3 KDGRCGPKFPLPGGKPPECDPDSPKPCCSNGGYCGSGSEHCDCP-GCV 49 (51)
T ss_pred cCCccCCCccCCCCCccccCCCCCCcccCCCceeCCCcccccCC-CCc
Confidence 3567777761 123642 69999999999999999732 553
No 5
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=90.86 E-value=0.67 Score=35.82 Aligned_cols=37 Identities=32% Similarity=0.580 Sum_probs=23.4
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCC-CCCCC
Q 043941 17 IVSLTMVAYTVKAQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQF-NCWPP 73 (78)
Q Consensus 17 l~~~~~~~~~~~~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~-~C~~~ 73 (78)
|+.+...+.++..+.|+ .. . ++++||.. +|++ .|.++
T Consensus 16 l~~~~~~~~~~~~q~~~-~~-----~------------~~~~~~~~--~c~~g~c~~~ 53 (286)
T KOG4742|consen 16 LFLLLQSSSTVASQNCG-AS-----N------------TTPPYCKF--GCGPGPCSGP 53 (286)
T ss_pred HHHHHHHHHhhhcccCC-CC-----c------------cccccccC--CCCCCCCCCC
Confidence 33444455667777775 11 1 78899987 8887 56554
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=88.97 E-value=0.63 Score=30.27 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=11.0
Q ss_pred CchhHHHHH-HHHHHHHHHHHHHHH
Q 043941 1 MTMRKFSLL-LCIYVVLIVSLTMVA 24 (78)
Q Consensus 1 ~~~~~~~~~-~~~~~~~l~~~~~~~ 24 (78)
|.-++|+|+ |.+++|+|++..+++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 564554433 334444555444443
No 7
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=79.60 E-value=0.7 Score=30.43 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=12.8
Q ss_pred hhccCCCCCCCCCCCCCCCCccccccce
Q 043941 25 YTVKAQQCGRQGLDRPCPNNLCCSQFGF 52 (78)
Q Consensus 25 ~~~~~~~CG~~~g~~~Cp~~~CCS~~G~ 52 (78)
+++....|-.+. .|..+.||+.+-|
T Consensus 19 ~~vitg~C~~d~---dCg~G~CCA~~~~ 43 (97)
T PF06607_consen 19 AAVITGACESDA---DCGPGTCCAVSNW 43 (97)
T ss_dssp ----SSC-SSGG---GT-TTEEECE-SS
T ss_pred eeEEeccccCcC---CCCCCceeCcccc
Confidence 345566776554 5777899988654
No 8
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=57.59 E-value=6.4 Score=23.28 Aligned_cols=6 Identities=50% Similarity=1.237 Sum_probs=2.7
Q ss_pred Cccccc
Q 043941 44 NLCCSQ 49 (78)
Q Consensus 44 ~~CCS~ 49 (78)
..|||.
T Consensus 62 ~~CC~~ 67 (75)
T PF02950_consen 62 SECCSG 67 (75)
T ss_dssp TCBSSS
T ss_pred CCCCCC
Confidence 344444
No 9
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=57.57 E-value=6.2 Score=24.85 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYVVLIV 18 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l~ 18 (78)
|.++|+.+.++|++|-
T Consensus 1 mnn~Si~VLlaLvLIg 16 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIG 16 (71)
T ss_pred CCchhHHHHHHHHHHh
Confidence 5567776666655544
No 10
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=55.53 E-value=13 Score=24.10 Aligned_cols=17 Identities=18% Similarity=0.211 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043941 9 LLCIYVVLIVSLTMVAY 25 (78)
Q Consensus 9 ~~~~~~~~l~~~~~~~~ 25 (78)
+|.+.|++++.|+++++
T Consensus 6 ~llL~l~LA~lLlisSe 22 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSE 22 (95)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444433333333333
No 11
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=53.38 E-value=9.6 Score=26.17 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=10.0
Q ss_pred CchhHHHHHHHHHH
Q 043941 1 MTMRKFSLLLCIYV 14 (78)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (78)
|+|+|+++++.+.+
T Consensus 1 m~~~~~~~~~~~~~ 14 (176)
T PRK15205 1 MKNKRALLPLALLL 14 (176)
T ss_pred CchHHHHHHHHHHh
Confidence 99999776555553
No 12
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=49.69 E-value=23 Score=27.20 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYVVLIVSLT 21 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~ 21 (78)
|+|+++++.+++++++.++
T Consensus 1 ~~~~~~~i~~~~vl~~~~~ 19 (342)
T TIGR00247 1 MKKFLIIILLLFVLFFILG 19 (342)
T ss_pred ChhHHHHHHHHHHHHHHHH
Confidence 6777766555555555444
No 13
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=49.38 E-value=30 Score=19.76 Aligned_cols=13 Identities=23% Similarity=0.769 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 043941 29 AQQCGRQGLDRPCPNN 44 (78)
Q Consensus 29 ~~~CG~~~g~~~Cp~~ 44 (78)
..+|-... .||..
T Consensus 27 ~~~C~~d~---DCp~~ 39 (54)
T PF07127_consen 27 IIPCKTDS---DCPKD 39 (54)
T ss_pred CcccCccc---cCCCC
Confidence 45777654 57765
No 14
>PF06873 SerH: Cell surface immobilisation antigen SerH; InterPro: IPR009670 This entry consists of several cell surface immobilisation antigen SerH proteins which seem to be specific to Tetrahymena thermophila. The SerH locus of T. thermophila is one of several paralogous loci with genes encoding variants of the major cell surface protein known as the immobilisation antigen (i-ag) [].
Probab=39.49 E-value=29 Score=28.03 Aligned_cols=7 Identities=14% Similarity=0.416 Sum_probs=3.9
Q ss_pred cCCCCCC
Q 043941 28 KAQQCGR 34 (78)
Q Consensus 28 ~~~~CG~ 34 (78)
.+-.|..
T Consensus 26 ~dV~Cs~ 32 (403)
T PF06873_consen 26 ADVTCSG 32 (403)
T ss_pred CcccCCC
Confidence 4456665
No 15
>PRK03577 acid shock protein precursor; Provisional
Probab=39.26 E-value=40 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 043941 3 MRKFSLLLCIYVVLIVSLTMVAYT 26 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~ 26 (78)
|++++.+|...++.|.++++++.+
T Consensus 1 MKKVLAlvVAa~~glSs~AFAA~t 24 (102)
T PRK03577 1 MKKVLALVVAAAMGLSSAAFAAET 24 (102)
T ss_pred ChHHHHHHHHHHHHhhHHHHhccc
Confidence 566666666666677777766544
No 16
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=38.42 E-value=44 Score=23.54 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHHHH
Q 043941 1 MTMRKFSLLLCIYVVLIV 18 (78)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~ 18 (78)
|+|.|.+++.++++.+.+
T Consensus 1 ~~~~kkl~~~~v~~~l~l 18 (170)
T PRK12750 1 MKLAKKLVLAAVVLPLTL 18 (170)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 888666655554444433
No 17
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=37.85 E-value=76 Score=24.69 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCCCCCCCCCcccccc
Q 043941 3 MRKFSLLLCIYVVLIVSLTMVAYTVKA-QQCGRQGLDRPCPNNLCCSQF 50 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~CG~~~g~~~Cp~~~CCS~~ 50 (78)
+.+.+++..+++++++......+.-.. .++-+ ..+..|..+ .|+.+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~c~~g-~c~~~ 53 (286)
T KOG4742|consen 7 LTKNLLLTLLFLLLQSSSTVASQNCGASNTTPP-YCKFGCGPG-PCSGP 53 (286)
T ss_pred hhhhHHHHHHHHHHHHHHhhhcccCCCCccccc-cccCCCCCC-CCCCC
Confidence 344444555555454443333322211 13332 223446555 55544
No 18
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=36.81 E-value=52 Score=21.59 Aligned_cols=7 Identities=43% Similarity=0.572 Sum_probs=4.4
Q ss_pred CchhHHH
Q 043941 1 MTMRKFS 7 (78)
Q Consensus 1 ~~~~~~~ 7 (78)
|.|++-.
T Consensus 1 m~~~~~~ 7 (91)
T TIGR01165 1 MSMKKTI 7 (91)
T ss_pred CCcchhH
Confidence 7776544
No 19
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=36.18 E-value=22 Score=23.64 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYVVL 16 (78)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (78)
||++++.+.+++++
T Consensus 1 M~~~~~~~~~~~~~ 14 (162)
T PF12276_consen 1 MKRRLLLALALALL 14 (162)
T ss_pred CchHHHHHHHHHHH
Confidence 55555444444433
No 20
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=35.21 E-value=63 Score=22.71 Aligned_cols=15 Identities=0% Similarity=0.113 Sum_probs=7.7
Q ss_pred chhHHHHHHHHHHHH
Q 043941 2 TMRKFSLLLCIYVVL 16 (78)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (78)
+||++.+.+.++.+.
T Consensus 4 ~~~~~~~~~~~~~~~ 18 (178)
T PRK13884 4 ILKRITAGVAVAGLA 18 (178)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666555443333
No 21
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=35.10 E-value=78 Score=20.77 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043941 5 KFSLLLCIYVVLIVSLTMVA 24 (78)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~ 24 (78)
.|++.|++|+++++.+....
T Consensus 41 ~FWv~LA~FV~~lF~iL~~m 60 (90)
T PF15183_consen 41 AFWVSLAAFVVFLFLILLYM 60 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 36777888888877766554
No 22
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=35.08 E-value=79 Score=19.74 Aligned_cols=7 Identities=14% Similarity=0.297 Sum_probs=3.4
Q ss_pred CchhHHH
Q 043941 1 MTMRKFS 7 (78)
Q Consensus 1 ~~~~~~~ 7 (78)
|++++.+
T Consensus 2 l~I~~KL 8 (181)
T PF12729_consen 2 LSIRTKL 8 (181)
T ss_pred CcHHHHH
Confidence 5564433
No 23
>PRK10780 periplasmic chaperone; Provisional
Probab=34.42 E-value=58 Score=22.22 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYVVL 16 (78)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (78)
|+++.+++.+++++
T Consensus 1 Mkk~~~~~~l~l~~ 14 (165)
T PRK10780 1 MKKWLLAAGLGLAL 14 (165)
T ss_pred ChHHHHHHHHHHHH
Confidence 67777666555443
No 24
>PRK02710 plastocyanin; Provisional
Probab=33.85 E-value=47 Score=21.52 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 043941 4 RKFSLLLCIYVVLIVSLT 21 (78)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~ 21 (78)
+++++++...|+++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (119)
T PRK02710 3 KRLRSIAAALVAVVSSFG 20 (119)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 445555444444433333
No 25
>PRK15307 major fimbrial protein StkA; Provisional
Probab=33.09 E-value=43 Score=23.61 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=5.6
Q ss_pred CchhHHHH
Q 043941 1 MTMRKFSL 8 (78)
Q Consensus 1 ~~~~~~~~ 8 (78)
|+|++..+
T Consensus 1 m~~~~~~l 8 (201)
T PRK15307 1 MFLKKYGL 8 (201)
T ss_pred CchHHHHH
Confidence 88886654
No 26
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=31.73 E-value=1e+02 Score=17.30 Aligned_cols=12 Identities=25% Similarity=0.478 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 043941 10 LCIYVVLIVSLT 21 (78)
Q Consensus 10 ~~~~~~~l~~~~ 21 (78)
+.|.+++++.++
T Consensus 21 l~mi~vFi~li~ 32 (38)
T PF09125_consen 21 LAMILVFIALIG 32 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 27
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=30.36 E-value=80 Score=20.97 Aligned_cols=19 Identities=16% Similarity=0.362 Sum_probs=8.5
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 043941 1 MTMRKFSLLLCIYVVLIVS 19 (78)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~ 19 (78)
|.+++..+++.++++.++.
T Consensus 1 ~~~~~~~L~~~vi~l~~~p 19 (100)
T PRK02898 1 KMKKNLLLLLLVILLAVLP 19 (100)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 28
>COG5510 Predicted small secreted protein [Function unknown]
Probab=29.85 E-value=87 Score=18.06 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYV 14 (78)
Q Consensus 3 ~~~~~~~~~~~~ 14 (78)
|+++.+++.+++
T Consensus 2 mk~t~l~i~~vl 13 (44)
T COG5510 2 MKKTILLIALVL 13 (44)
T ss_pred chHHHHHHHHHH
Confidence 555554444443
No 29
>PRK15300 fimbrial protein StiA; Provisional
Probab=28.57 E-value=36 Score=23.32 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHHHHH
Q 043941 1 MTMRKFSLLLCIYVVL 16 (78)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (78)
|||.++.+++.+.+++
T Consensus 1 mk~~~~~~~~~~~~~~ 16 (179)
T PRK15300 1 MKLSLKTLTVALAAIT 16 (179)
T ss_pred CceeehhHHHHHHHHH
Confidence 7886555444444433
No 30
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=26.60 E-value=61 Score=20.47 Aligned_cols=7 Identities=43% Similarity=0.686 Sum_probs=3.7
Q ss_pred hhHHHHH
Q 043941 3 MRKFSLL 9 (78)
Q Consensus 3 ~~~~~~~ 9 (78)
||+.++.
T Consensus 1 MR~~~~a 7 (82)
T PF12071_consen 1 MRRLLLA 7 (82)
T ss_pred ChhHHHH
Confidence 5655543
No 31
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=25.36 E-value=23 Score=22.91 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=0.0
Q ss_pred Cc-hhHHH
Q 043941 1 MT-MRKFS 7 (78)
Q Consensus 1 ~~-~~~~~ 7 (78)
|+ ++|++
T Consensus 1 M~~~kk~l 8 (144)
T PF12869_consen 1 MKILKKIL 8 (144)
T ss_dssp --------
T ss_pred CchhhhHH
Confidence 67 44444
No 32
>PRK11372 lysozyme inhibitor; Provisional
Probab=25.34 E-value=71 Score=21.01 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=6.5
Q ss_pred CchhHHHHHHH
Q 043941 1 MTMRKFSLLLC 11 (78)
Q Consensus 1 ~~~~~~~~~~~ 11 (78)
|-|+++++++.
T Consensus 1 ~~mk~ll~~~~ 11 (109)
T PRK11372 1 MSMKKLLIICL 11 (109)
T ss_pred CchHHHHHHHH
Confidence 67887554333
No 33
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=24.19 E-value=1.5e+02 Score=19.16 Aligned_cols=19 Identities=26% Similarity=0.859 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 043941 4 RKFSLLLCIYVVLIVSLTM 22 (78)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~ 22 (78)
|-|.+++|.++++++.+++
T Consensus 34 rdFvLVic~~lVfVii~lF 52 (84)
T PF06143_consen 34 RDFVLVICCFLVFVIIVLF 52 (84)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566777766666555444
No 34
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=23.87 E-value=80 Score=19.83 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=7.7
Q ss_pred hhHHHHHHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYVVLIVS 19 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l~~ 19 (78)
|++..+++.+.+++++.
T Consensus 1 ~kn~~l~~~vv~l~~~p 17 (74)
T PF02553_consen 1 MKNLLLLLLVVALAVVP 17 (74)
T ss_pred CceeHHHHHHHHHHHHH
Confidence 44555444444444443
No 35
>PF10795 DUF2607: Protein of unknown function (DUF2607); InterPro: IPR019731 This entry represents conserved protein found in in Gammaproteobacteria. The function is not known.
Probab=23.23 E-value=1.4e+02 Score=19.63 Aligned_cols=20 Identities=15% Similarity=0.399 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 043941 4 RKFSLLLCIYVVLIVSLTMV 23 (78)
Q Consensus 4 ~~~~~~~~~~~~~l~~~~~~ 23 (78)
|+..+++.+++++.++++..
T Consensus 13 ~r~~~l~~vaLlL~lnfA~i 32 (99)
T PF10795_consen 13 RRTVALFAVALLLWLNFAAI 32 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555455555444554443
No 36
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=23.16 E-value=82 Score=23.25 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=5.8
Q ss_pred hhHHHHHHHH
Q 043941 3 MRKFSLLLCI 12 (78)
Q Consensus 3 ~~~~~~~~~~ 12 (78)
|||+-.+|..
T Consensus 1 mr~~~~~ils 10 (199)
T PF06316_consen 1 MRKLCAAILS 10 (199)
T ss_pred ChhHHHHHHH
Confidence 6777754443
No 37
>PF00526 Dicty_CTDC: Dictyostelium (slime mold) repeat; InterPro: IPR001673 Several Dictyostelium species have proteins that contain conserved repeats. These proteins have been variously described as 'extracellular matrix protein B', 'cyclic nucleotide phosphodiesterase inhibitor precursor', 'prestalk protein precursor', 'putative calmodulin-binding protein CamBP64', and 'cysteine-rich, acidic integral membrane protein precursor' as well as 'hypothetical protein'.
Probab=22.97 E-value=42 Score=16.76 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=9.5
Q ss_pred CCCccCCCCCCCC
Q 043941 56 TYDYCSPSENCQF 68 (78)
Q Consensus 56 t~dyCg~~~gCq~ 68 (78)
|.|+|+...||+.
T Consensus 4 T~D~C~~~~GC~h 16 (24)
T PF00526_consen 4 TIDSCDNSTGCVH 16 (24)
T ss_pred ccccCCCCCCEEC
Confidence 4688987668875
No 38
>PRK09738 small toxic polypeptide; Provisional
Probab=22.81 E-value=60 Score=19.20 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=8.0
Q ss_pred CchhHHHHHHHHHHH
Q 043941 1 MTMRKFSLLLCIYVV 15 (78)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (78)
|||++..+++++.++
T Consensus 1 mkmp~~~~~~~livv 15 (52)
T PRK09738 1 MKLPRSPLVWCVLIV 15 (52)
T ss_pred CCCccceehhhHHHH
Confidence 777654544444443
No 39
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=22.44 E-value=83 Score=26.15 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=5.4
Q ss_pred CchhHHHHH
Q 043941 1 MTMRKFSLL 9 (78)
Q Consensus 1 ~~~~~~~~~ 9 (78)
|-|.|++++
T Consensus 3 ~~~~~~~~~ 11 (539)
T PLN02995 3 MMMQKISFL 11 (539)
T ss_pred hHhhhhhHH
Confidence 456777744
No 40
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=22.35 E-value=71 Score=22.97 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=13.1
Q ss_pred CchhHHHHHHHHHHHHHH
Q 043941 1 MTMRKFSLLLCIYVVLIV 18 (78)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~ 18 (78)
|+||++++.+.+++-+..
T Consensus 1 ~k~~~m~~~~g~~~~la~ 18 (178)
T KOG4154|consen 1 MKMRRMVATIGFAARLAL 18 (178)
T ss_pred CcchhHHHHHHHHHHHHH
Confidence 889999887777664433
No 41
>PRK06287 cobalt transport protein CbiN; Validated
Probab=22.04 E-value=1.5e+02 Score=19.39 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=5.2
Q ss_pred CchhHHHHH
Q 043941 1 MTMRKFSLL 9 (78)
Q Consensus 1 ~~~~~~~~~ 9 (78)
|.+|++++.
T Consensus 2 ~~~~~~~~~ 10 (107)
T PRK06287 2 MDNKKFLIA 10 (107)
T ss_pred CcchhhHHH
Confidence 566666643
No 42
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=22.01 E-value=1.5e+02 Score=16.61 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 043941 4 RKFSLLLCIYVVLIVS 19 (78)
Q Consensus 4 ~~~~~~~~~~~~~l~~ 19 (78)
|++...++++++.+++
T Consensus 21 rnit~cfal~vv~lvs 36 (40)
T PF13124_consen 21 RNITFCFALLVVVLVS 36 (40)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455455555555544
No 43
>COG3678 CpxP P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein [Intracellular trafficking and secretion / Cell motility and secretio / Signal transduction mechanisms / Inorganic ion transport and metabolism]
Probab=21.78 E-value=1.6e+02 Score=20.63 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHhhc
Q 043941 3 MRKFSLLLCIYVVLI--VSLTMVAYTV 27 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l--~~~~~~~~~~ 27 (78)
||+...++.+..+++ ++++..++.+
T Consensus 2 mr~~~~~v~a~al~~~a~~la~~Aa~~ 28 (160)
T COG3678 2 MRKVTAAVGAAALALTASALAHAAATA 28 (160)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 566665544444444 4444444443
No 44
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=21.77 E-value=1.4e+02 Score=18.23 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYVVLIVS 19 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l~~ 19 (78)
||..+++.+++++.+.+
T Consensus 1 MR~~lLf~aiLalsla~ 17 (59)
T PF03823_consen 1 MRSTLLFAAILALSLAR 17 (59)
T ss_pred ChhHHHHHHHHHHHHHH
Confidence 56556666665555554
No 45
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=21.75 E-value=1.1e+02 Score=19.53 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHH
Q 043941 3 MRKFSLLLCIYVVLI 17 (78)
Q Consensus 3 ~~~~~~~~~~~~~~l 17 (78)
|++|.++|.+.++..
T Consensus 1 MKhFaiLilavVaSA 15 (78)
T PF11714_consen 1 MKHFAILILAVVASA 15 (78)
T ss_pred CchHHHHHHHHHHHH
Confidence 567776666555443
No 46
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.01 E-value=82 Score=21.81 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043941 6 FSLLLCIYVVLIVSLTMV 23 (78)
Q Consensus 6 ~~~~~~~~~~~l~~~~~~ 23 (78)
.++++.+.+++++++++.
T Consensus 61 ~lffvglii~LivSLaLV 78 (128)
T PF15145_consen 61 SLFFVGLIIVLIVSLALV 78 (128)
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 345566666666665554
No 47
>smart00254 ShKT ShK toxin domain. ShK toxin domain
Probab=20.81 E-value=24 Score=17.90 Aligned_cols=23 Identities=35% Similarity=0.862 Sum_probs=12.1
Q ss_pred ccccc--ceecCCCCccCCCCCCCCCCC
Q 043941 46 CCSQF--GFCGSTYDYCSPSENCQFNCW 71 (78)
Q Consensus 46 CCS~~--G~CG~t~dyCg~~~gCq~~C~ 71 (78)
=|+.| |+| +..+|=.. .|+..|+
T Consensus 7 ~C~~wa~~~C-~~~~~~~~--~C~ktCg 31 (33)
T smart00254 7 DCAAWAKGFC-TNPFYMKS--NCPKTCG 31 (33)
T ss_pred cCcchhhCcC-CChhHHHh--hhhhhcc
Confidence 35554 778 44444333 5666553
No 48
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.80 E-value=1.3e+02 Score=20.79 Aligned_cols=23 Identities=26% Similarity=0.615 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 043941 5 KFSLLLCIYVVLIVSLTMVAYTV 27 (78)
Q Consensus 5 ~~~~~~~~~~~~l~~~~~~~~~~ 27 (78)
+++++...++++++++.++....
T Consensus 36 NysiL~Ls~vvlvi~~~LLgrsi 58 (125)
T PF15048_consen 36 NYSILALSFVVLVISFFLLGRSI 58 (125)
T ss_pred chHHHHHHHHHHHHHHHHHHHHh
Confidence 45655445555555555554333
No 49
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=20.02 E-value=1.5e+02 Score=20.76 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=5.9
Q ss_pred CchhHHHHHHHHHH
Q 043941 1 MTMRKFSLLLCIYV 14 (78)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (78)
|.-+++++++.++.
T Consensus 1 ~~~~~~~~~~~~~~ 14 (176)
T PRK13838 1 MRRRRALLLLAVAA 14 (176)
T ss_pred CCcchHHHHHHHHH
Confidence 33344554444333
Done!