Query 043941
Match_columns 78
No_of_seqs 111 out of 750
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 16:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wkx_A Hevein isoform 2; aller 99.7 3E-18 1E-22 97.9 1.0 43 30-72 1-43 (43)
2 2lb7_A WAMP-1A, antimicrobial 99.6 2.6E-17 8.9E-22 94.4 0.2 42 29-72 1-43 (44)
3 1p9g_A EAFP 2; antifungal pept 99.5 9.9E-16 3.4E-20 86.7 0.8 38 28-72 3-41 (41)
4 2kus_A SM-AMP-1.1A; plant anti 99.4 1E-13 3.4E-18 76.1 1.4 33 28-62 3-35 (35)
5 1uha_A Lectin-D2; chitin-bindi 99.3 2.5E-13 8.7E-18 86.2 1.6 42 28-71 41-82 (82)
6 1en2_A UDA, agglutinin isolect 99.3 1.2E-13 4.3E-18 88.8 0.1 41 30-72 1-41 (89)
7 1uha_A Lectin-D2; chitin-bindi 99.3 3.1E-13 1.1E-17 85.8 0.7 42 29-72 1-42 (82)
8 1en2_A UDA, agglutinin isolect 99.3 2.4E-13 8.3E-18 87.5 -0.0 44 27-72 44-88 (89)
9 1ulk_A Lectin-C; chitin-bindin 99.2 1.5E-12 5E-17 88.2 2.0 43 29-73 83-125 (126)
10 1mmc_A AC-AMP2, antimicrobial 99.2 1.7E-12 5.7E-17 69.2 1.1 29 30-62 2-30 (30)
11 2dkv_A Chitinase; whole struct 99.2 2.4E-12 8.1E-17 97.2 1.7 42 30-73 2-43 (309)
12 1ulk_A Lectin-C; chitin-bindin 99.1 1E-11 3.6E-16 84.0 0.6 42 29-72 1-42 (126)
13 2uvo_A Agglutinin isolectin 1; 99.0 3.9E-11 1.3E-15 84.6 1.0 43 28-72 85-128 (171)
14 2uvo_A Agglutinin isolectin 1; 98.9 1.2E-10 4.2E-15 82.0 -0.4 40 30-71 1-41 (171)
15 2jmv_A Scytovirin; protein, su 56.6 8.2 0.00028 24.4 2.6 27 30-59 66-92 (95)
16 2po8_A Mcoti-II; oxidative fol 39.8 7.2 0.00025 20.6 0.3 19 40-58 13-31 (34)
17 4i62_A Amino acid ABC transpor 25.5 15 0.0005 23.5 0.0 9 1-9 3-11 (269)
18 2v25_A Major cell-binding fact 23.7 17 0.00057 23.0 0.0 6 1-6 1-6 (259)
19 1hvw_A Omega-ACTX-HV1A, omega- 23.2 32 0.0011 17.1 1.0 12 39-50 6-18 (26)
No 1
>1wkx_A Hevein isoform 2; allergen, lectin, agglutinin-toxin motif; 1.70A {Hevea brasiliensis} PDB: 1hev_A 1q9b_A*
Probab=99.69 E-value=3e-18 Score=97.91 Aligned_cols=43 Identities=63% Similarity=1.365 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCCC
Q 043941 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCWP 72 (78)
Q Consensus 30 ~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~~ 72 (78)
++||++.++.+||.+.|||+|||||+|+|||+..++||++|++
T Consensus 1 ~~CG~~~gg~~Cp~~~CCS~~G~CGtt~~yCg~g~~Cqs~C~~ 43 (43)
T 1wkx_A 1 EQCGRQAGGKLCPDNLCCSQWGWCGSTDEYCSPDHNCQSNCKD 43 (43)
T ss_dssp CCSBGGGTTBCCSTTCEECTTSCEESSHHHHCGGGTCCBSCCC
T ss_pred CCcCCCCCCCcCCCCCccCccCccCCCHhHhCCCcchhhcCCc
Confidence 5899999999999999999999999999999984459999964
No 2
>2lb7_A WAMP-1A, antimicrobial peptide 1A; antimicrobial protein; NMR {Triticum kiharae}
Probab=99.63 E-value=2.6e-17 Score=94.41 Aligned_cols=42 Identities=50% Similarity=1.188 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCCCCCccccccceecCCCCccCCCCC-CCCCCCC
Q 043941 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSEN-CQFNCWP 72 (78)
Q Consensus 29 ~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~g-Cq~~C~~ 72 (78)
+++||++.++.+||.+.|||+|||||+|+|||+. + ||++|++
T Consensus 1 a~~CG~~~~g~~C~~g~CCS~~G~CG~t~~yCg~--g~Cqs~c~~ 43 (44)
T 2lb7_A 1 AQRCGDQARGAKCPNCLCCGKYGFCGSGDAYCGA--GSCQSQCRG 43 (44)
T ss_dssp CEECBGGGTTBCCCTTCEEETTTEEECSHHHHST--TSEEECTTC
T ss_pred CCCccCCCCCccCCCCCccCCCCccCCChhhcCC--CcccccCCC
Confidence 4689999888999999999999999999999998 7 9999975
No 3
>1p9g_A EAFP 2; antifungal peptide, atomic resolution, antifungal protein; HET: PCA; 0.84A {Eucommia ulmoides} SCOP: g.3.1.1 PDB: 1p9z_A*
Probab=99.53 E-value=9.9e-16 Score=86.71 Aligned_cols=38 Identities=45% Similarity=1.197 Sum_probs=33.8
Q ss_pred cCCCCCCCCCCCCCCCCccccccceecCCCCccCCCCC-CCCCCCC
Q 043941 28 KAQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSEN-CQFNCWP 72 (78)
Q Consensus 28 ~~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~g-Cq~~C~~ 72 (78)
.+++|| .+||.++|||+|||||++++||+. + ||++|++
T Consensus 3 ~aq~CG-----~~C~~g~CCS~~G~CGtt~~yCg~--g~Cqs~C~~ 41 (41)
T 1p9g_A 3 CASRCP-----RPCNAGLCCSIYGYCGSGAAYCGA--GNCRCQCRG 41 (41)
T ss_dssp GGGGTT-----CCSCTTCEEETTSCEECSHHHHST--TTEEECTTC
T ss_pred chhhcC-----CCCCCCCCCCCCCcccCCcCccCC--cchhhhCCC
Confidence 457888 379999999999999999999998 7 9999974
No 4
>2kus_A SM-AMP-1.1A; plant antimicrobial peptide, chitin-binding peptide, antimic protein; NMR {Stellaria media}
Probab=99.37 E-value=1e-13 Score=76.11 Aligned_cols=33 Identities=45% Similarity=1.039 Sum_probs=29.9
Q ss_pred cCCCCCCCCCCCCCCCCccccccceecCCCCccCC
Q 043941 28 KAQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSP 62 (78)
Q Consensus 28 ~~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~ 62 (78)
.+++||++.+ .||.+.|||+|||||+|++||+.
T Consensus 3 ~~~~CG~~~g--~C~~g~CCS~~G~CG~t~~yCg~ 35 (35)
T 2kus_A 3 PNGQCGPGWG--GCRGGLCCSQYGYCGSGPKYCAH 35 (35)
T ss_dssp TTCBCBTTTB--CCCTTCEECTTSBEECSHHHHCC
T ss_pred CccccCCCCC--ccCCCCccCCCccccCChHHhCc
Confidence 5789999986 49999999999999999999973
No 5
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A
Probab=99.33 E-value=2.5e-13 Score=86.17 Aligned_cols=42 Identities=38% Similarity=0.950 Sum_probs=38.8
Q ss_pred cCCCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCC
Q 043941 28 KAQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCW 71 (78)
Q Consensus 28 ~~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~ 71 (78)
.+.+||+++++.+|+.+.|||+|||||+|++||++ +||++|+
T Consensus 41 dd~~CG~~~~g~~C~~~~CCS~~G~CG~t~~~Cg~--gCq~~c~ 82 (82)
T 1uha_A 41 DYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCED--GCQSQCD 82 (82)
T ss_dssp TTTBCBGGGTTBCCSTTCEECTTSBEECSHHHHST--TCCBCCC
T ss_pred cccccCCccccccCCCCCeeCCCCeECCchhhhCc--cccccCC
Confidence 35789999888999999999999999999999998 9999984
No 6
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A
Probab=99.33 E-value=1.2e-13 Score=88.82 Aligned_cols=41 Identities=41% Similarity=1.221 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCCC
Q 043941 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCWP 72 (78)
Q Consensus 30 ~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~~ 72 (78)
++||++.++.+|+.+.|||+|||||+++|||++ +||++|+.
T Consensus 1 ~~CG~~~~g~~C~~g~CCS~~G~CG~t~~yCg~--gCqs~C~~ 41 (89)
T 1en2_A 1 ERCGSQGGGSTCPGLRCCSIWGWCGDSEPYCGR--TCENKCWS 41 (89)
T ss_dssp CBCTTTTTSCCCGGGCEEETTSBEESSHHHHST--TEEESCGG
T ss_pred CccCCCCCCCcCCCCCccCCCCCcCCCHHHHcc--cccccCCC
Confidence 589999999999999999999999999999998 99999964
No 7
>1uha_A Lectin-D2; chitin-binding domain, sugar binding protein; 1.50A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 PDB: 1ulm_A* 1uln_A
Probab=99.30 E-value=3.1e-13 Score=85.78 Aligned_cols=42 Identities=45% Similarity=1.152 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCCC
Q 043941 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCWP 72 (78)
Q Consensus 29 ~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~~ 72 (78)
+++||++.++.+|+.+.|||+|||||++++||++ +||++|+.
T Consensus 1 a~~CG~~~~~~~C~~g~CCS~~G~CG~~~~yCg~--gC~s~Cdd 42 (82)
T 1uha_A 1 APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQ--GCQSQCDY 42 (82)
T ss_dssp CCCSBGGGTTBCCGGGCEECTTSCEESSHHHHST--TCCBCTTT
T ss_pred CCcccCCCCCCCCCCCCccCCCCccCCCHHHHcC--CCCCcccc
Confidence 4799999988999999999999999999999998 99999864
No 8
>1en2_A UDA, agglutinin isolectin I/agglutinin isolectin V/ AG isolectin VI; hevein domain, superantigen, saccharide binding binding protein; HET: NAG; 1.40A {Urtica dioica} SCOP: g.3.1.1 g.3.1.1 PDB: 1eis_A* 1enm_A* 1ehd_A 1ehh_A* 1iqb_A
Probab=99.29 E-value=2.4e-13 Score=87.46 Aligned_cols=44 Identities=39% Similarity=1.016 Sum_probs=38.8
Q ss_pred ccCCCCCCCCCCCCCCCCccccccceecCCCCcc-CCCCCCCCCCCC
Q 043941 27 VKAQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYC-SPSENCQFNCWP 72 (78)
Q Consensus 27 ~~~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyC-g~~~gCq~~C~~ 72 (78)
..+.+||+++++.+|+.+.|||+|||||+|++|| +. +||++|++
T Consensus 44 s~d~~CG~~~g~~~C~~g~CCS~~G~CG~t~~yC~g~--gCQs~C~~ 88 (89)
T 1en2_A 44 RSDHRCGAAVGNPPCGQDRCCSVHGWCGGGNDYCSGG--NCQYRCSS 88 (89)
T ss_dssp CTTCBCSGGGTCCCCCTTCEEETTSBEESSHHHHSGG--GEEECC--
T ss_pred ccccccccccCCccCCCCCeeCCCCccCCChhhcCCC--CccccCCC
Confidence 3578999999889999999999999999999999 66 99999965
No 9
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1
Probab=99.25 E-value=1.5e-12 Score=88.20 Aligned_cols=43 Identities=42% Similarity=0.970 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCCCC
Q 043941 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCWPP 73 (78)
Q Consensus 29 ~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~~~ 73 (78)
+.+||+++++.+|+.++|||+|||||++++||++ +||++|+.|
T Consensus 83 ~g~CG~~~gg~~C~~~~CCS~~G~CG~t~~yCg~--gCq~~c~~p 125 (126)
T 1ulk_A 83 YWRCGKDFGGRLCTEDMCCSQYGWCGLTDDHCED--GCQSQCDLP 125 (126)
T ss_dssp TTBCBGGGTTBCCSTTCEECTTSBEECSHHHHST--TCCBCCCCC
T ss_pred cccccccCCCCcCCCCCccCCCCcCCCChhhhcc--cchhcCCCC
Confidence 5799999988999999999999999999999998 999999776
No 10
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A*
Probab=99.23 E-value=1.7e-12 Score=69.18 Aligned_cols=29 Identities=48% Similarity=1.318 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCCCccccccceecCCCCccCC
Q 043941 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSP 62 (78)
Q Consensus 30 ~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~ 62 (78)
.+||+ ..||.+.|||+|||||+|++||+.
T Consensus 2 g~Cg~----~~Cp~~~CCS~~G~CGtt~~yC~~ 30 (30)
T 1mmc_A 2 GECVR----GRCPSGMCCSQFGYCGKGPKYCGR 30 (30)
T ss_dssp CCCSS----SCCSTTCEECTTSCEESSHHHHCC
T ss_pred cccCC----CcCCCCCCCCCCCcccCcchhhCC
Confidence 47886 469999999999999999999973
No 11
>2dkv_A Chitinase; whole structure, oryza sativa L. japonica, hydrolase; HET: MES; 2.00A {Oryza sativa japonica group} PDB: 3iwr_A*
Probab=99.21 E-value=2.4e-12 Score=97.24 Aligned_cols=42 Identities=48% Similarity=1.126 Sum_probs=39.3
Q ss_pred CCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCCCC
Q 043941 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCWPP 73 (78)
Q Consensus 30 ~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~~~ 73 (78)
++||++.++..||.+.|||+|||||+|++||+. +||++|.+.
T Consensus 2 ~~cg~~~~~~~c~~~~Ccs~~G~Cg~t~~~Cg~--gcq~~c~~~ 43 (309)
T 2dkv_A 2 EQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGD--GCQSQCSGC 43 (309)
T ss_dssp CBCSTTTTTCCCGGGCEECTTSBEESSHHHHST--TCCBCSSCC
T ss_pred CCcCCCCCCCcCCCCCcCcccccccCChHHhhc--cccccCCCC
Confidence 589999999999999999999999999999998 999999764
No 12
>1ulk_A Lectin-C; chitin-binding protein, hevein domain, PL-C, sugar binding protein; 1.80A {Phytolacca americana} SCOP: g.3.1.1 g.3.1.1 g.3.1.1
Probab=99.10 E-value=1e-11 Score=84.00 Aligned_cols=42 Identities=45% Similarity=1.122 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCCCCC
Q 043941 29 AQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFNCWP 72 (78)
Q Consensus 29 ~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~C~~ 72 (78)
+++||++.++.+|+.+.|||+|||||++++||++ +||++|+.
T Consensus 1 ~~~CG~~~~g~~C~~g~CCS~~G~CG~~~~yCg~--gC~s~C~~ 42 (126)
T 1ulk_A 1 APVCGVRASGRVCPDGYCCSQWGYCGTTEEYCGK--GCQSQCDY 42 (126)
T ss_dssp CCCSBGGGTTBCCGGGCEECTTSCEESSHHHHST--TCCBCTTT
T ss_pred CCccCCCCCCCcCCCCCccCCCCCcCcChhhhcc--cccccCCC
Confidence 4799999999999999999999999999999998 99999854
No 13
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A*
Probab=99.03 E-value=3.9e-11 Score=84.55 Aligned_cols=43 Identities=47% Similarity=1.106 Sum_probs=39.5
Q ss_pred cCCCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCC-CCCC
Q 043941 28 KAQQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQF-NCWP 72 (78)
Q Consensus 28 ~~~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~-~C~~ 72 (78)
.+.+||++.++.+|+.+.|||+|||||+|++||++ +||+ +|+.
T Consensus 85 ~~~~CG~~~~~~~C~~g~CCS~~G~CG~t~~yCg~--gCqsg~C~~ 128 (171)
T 2uvo_A 85 ADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGG--GCQSGACST 128 (171)
T ss_dssp SCCBCBGGGTTBCCGGGCEECTTSBEEBSHHHHST--TCCBSSCSS
T ss_pred cccccccccCCcccCCCccccccCCcCCchhhhcC--CCcCCCccc
Confidence 46799998888999999999999999999999998 9999 8875
No 14
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein domain, chitin-binding, GERM agglutinin, chitin-binding protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum} PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A 9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A* 2x52_A* 1t0w_A*
Probab=98.90 E-value=1.2e-10 Score=82.00 Aligned_cols=40 Identities=58% Similarity=1.475 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCCCCccccccceecCCCCccCCCCCCCCC-CC
Q 043941 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDYCSPSENCQFN-CW 71 (78)
Q Consensus 30 ~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dyCg~~~gCq~~-C~ 71 (78)
++||++.++.+||.+.|||+|||||++++||++ +||+. |+
T Consensus 1 ~~CG~~~~~~~C~~g~CCS~~G~CG~t~~yCg~--gCq~g~C~ 41 (171)
T 2uvo_A 1 ERCGEQGSNMECPNNLCCSQYGYCGMGGDYCGK--GCQNGACW 41 (171)
T ss_dssp CBCBGGGTTBBCGGGCEECTTSBEEBSHHHHST--TCCBSSCS
T ss_pred CCcCCCCCCCcCCCCCccCCCceeCCCchhhcc--CcccCccc
Confidence 589999999999999999999999999999998 99994 54
No 15
>2jmv_A Scytovirin; protein, sugar binding protein, antiviral protein; NMR {Scytonema varium} PDB: 2qsk_A 2qt4_A
Probab=56.59 E-value=8.2 Score=24.37 Aligned_cols=27 Identities=30% Similarity=0.730 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCCCCCccccccceecCCCCc
Q 043941 30 QQCGRQGLDRPCPNNLCCSQFGFCGSTYDY 59 (78)
Q Consensus 30 ~~CG~~~g~~~Cp~~~CCS~~G~CG~t~dy 59 (78)
.+|.+. ..|....=||+||||--|.-|
T Consensus 66 NRC~~~---~~CDG~RTCSs~G~CQGta~h 92 (95)
T 2jmv_A 66 NRCSNS---KQCDGARTCSSSGFCQGTAGH 92 (95)
T ss_dssp SCCSSS---SSCCSSCCSSSSSSSSSCCCB
T ss_pred cccCcc---ccccccceecccccccccccc
Confidence 466654 257777889999999877654
No 16
>2po8_A Mcoti-II; oxidative folding intermediate, plant protein; NMR {Momordica cochinchinensis} SCOP: g.3.2.1
Probab=39.76 E-value=7.2 Score=20.62 Aligned_cols=19 Identities=42% Similarity=0.996 Sum_probs=13.8
Q ss_pred CCCCCccccccceecCCCC
Q 043941 40 PCPNNLCCSQFGFCGSTYD 58 (78)
Q Consensus 40 ~Cp~~~CCS~~G~CG~t~d 58 (78)
.|...--|-..||||+++|
T Consensus 13 DCl~~CiC~~~G~CG~~s~ 31 (34)
T 2po8_A 13 DCPGACICRGNGYCGSGSD 31 (34)
T ss_dssp GSCTTEEECTTSBEEEGGG
T ss_pred CcccCCeEccCcccccCCC
Confidence 4766655777799998764
No 17
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=25.49 E-value=15 Score=23.46 Aligned_cols=9 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred CchhHHHHH
Q 043941 1 MTMRKFSLL 9 (78)
Q Consensus 1 ~~~~~~~~~ 9 (78)
|+|++.+++
T Consensus 3 ~~m~~~~~~ 11 (269)
T 4i62_A 3 NKMKKVLMT 11 (269)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 345555433
No 18
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=23.71 E-value=17 Score=22.97 Aligned_cols=6 Identities=50% Similarity=0.612 Sum_probs=0.0
Q ss_pred CchhHH
Q 043941 1 MTMRKF 6 (78)
Q Consensus 1 ~~~~~~ 6 (78)
|+|++.
T Consensus 1 M~mk~~ 6 (259)
T 2v25_A 1 MVFRKS 6 (259)
T ss_dssp ------
T ss_pred CcHHHH
Confidence 888875
No 19
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=23.18 E-value=32 Score=17.08 Aligned_cols=12 Identities=67% Similarity=1.525 Sum_probs=7.5
Q ss_pred CCCC-CCcccccc
Q 043941 39 RPCP-NNLCCSQF 50 (78)
Q Consensus 39 ~~Cp-~~~CCS~~ 50 (78)
..|| ++.|||..
T Consensus 6 q~Cp~~e~CCSGs 18 (26)
T 1hvw_A 6 QPCPYNENCCSQS 18 (26)
T ss_dssp SBCSSTTSBSSCC
T ss_pred CcCCCCccccccc
Confidence 4677 46777753
Done!