BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043942
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 199
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQ 282
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 189
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 251
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 252 SEDNLVYIWNLQTKEIVQKLQ 272
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 196
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQ 279
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 193
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQ 276
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 210
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 272
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 273 SEDNLVYIWNLQTKEIVQKLQ 293
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 199
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQ 282
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 196
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQ 279
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 192
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 254
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 255 SEDNLVYIWNLQTKEIVQKLQ 275
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 193
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 256 SEDNLVYIWNLQTKEIVQKLQ 276
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 194
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 256
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 257 SEDNLVYIWNLQTKEIVQKLQ 277
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 198
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 260
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 261 SEDNLVYIWNLQTKEIVQKLQ 281
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 199
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 261
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 262 SEDNLVYIWNLQTKEIVQKLQ 282
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 217
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 279
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 280 SEDNLVYIWNLQTKEIVQKLQ 300
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LAS L++ + T+ G + GI
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTAS----GQCLKTLIDDDNP 215
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 277
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 278 SEDNLVYIWNLQTKEIVQKLQ 298
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH + SS+ FS +G+ LA+ L++ + T+ G + GI
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D T+ +W+ G L GH + + C +F I +GS + ++ IW+ K
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 114 GENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID 168
G+ H+ S++ F+ + +I +S YDG+ C W S C+ +D
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ----CLKTLIDDDNP 196
Query: 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198
+ + S + +++ ++D T ++++ ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE------ 53
+ G + H D S++ F+ DG L+ S + GL + DT+S + L+ ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 54 -----GPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTG 100
P G D+T+ +W+ +G L ++GH + C +F+ T GK I +G
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 258
Query: 101 SDNATLSIWNPKGGENFHAIR 121
S++ + IWN + E ++
Sbjct: 259 SEDNLVYIWNLQTKEIVQKLQ 279
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 29/206 (14%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC------TVEG----PRGGI 59
+ GH S +AFS DGQ +AS V+ + + + LQ +V G P G
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 60 -----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG 114
+D TV +WN + G L +GH S + F+ DG+TI + SD+ T+ +WN + G
Sbjct: 113 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNG 170
Query: 115 ENFHAIRRSS-----LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDA 169
+ + S + FS + I ++ D L W + L T + GH +
Sbjct: 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL-WNRNGQLLQT------LTGHSSS 223
Query: 170 IQSLSVSAIRESLVSVSVDGTARVFE 195
++ ++ S +++ S S D T +++
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 29/206 (14%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
+ GH S +AFS DGQ +AS V+ + + + LQ T+ G +
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDDQ 439
Query: 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D TV +WN + G L +GH S + F+ DG+TI + SD+ T+ +WN G
Sbjct: 440 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 498
Query: 114 G----ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDA 169
H+ + FS + I ++ D L W + L T + GH +
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNGQLLQT------LTGHSSS 551
Query: 170 IQSLSVSAIRESLVSVSVDGTARVFE 195
+ ++ S +++ S S D T +++
Sbjct: 552 VWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 29/206 (14%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-----------PRGG 58
+ GH S + +AF DGQ +AS V+ + + + LQ T+ G P G
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQ 316
Query: 59 I-----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D TV +WN + G +L +GH S + F+ DG+TI + SD+ T+ +WN G
Sbjct: 317 TIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 114 G----ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDA 169
H+ + FS + I ++ D L W + L T + GH +
Sbjct: 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL-WNRNGQLLQT------LTGHSSS 428
Query: 170 IQSLSVSAIRESLVSVSVDGTARVFE 195
+ ++ S +++ S S D T +++
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 91/206 (44%), Gaps = 29/206 (14%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-----------PRGG 58
+ GH S +AFS DGQ +AS V+ + + + LQ T+ G P G
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDGQ 193
Query: 59 I-----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
+D TV +WN + G L +GH S + F+ DG+TI + SD+ T+ +WN G
Sbjct: 194 TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 252
Query: 114 G----ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDA 169
H+ + + F + I ++ D L W + L T + GH +
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL-WNRNGQLLQT------LTGHSSS 305
Query: 170 IQSLSVSAIRESLVSVSVDGTARVFE 195
+ ++ S +++ S S D T +++
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-----------PRG 57
+ H S +AFS DGQ +AS V+ + + + LQ T+ G P G
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVWGVAFSPDG 69
Query: 58 GI-----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112
+D TV +WN + G L +GH S + F+ DG+TI + SD+ T+ +WN +
Sbjct: 70 QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-R 127
Query: 113 GGENFHAIRRSS-----LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHI 167
G+ + S + FS + I ++ D L W + L T + GH
Sbjct: 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL-WNRNGQLLQT------LTGHS 180
Query: 168 DAIQSLSVSAIRESLVSVSVDGTARVFE 195
++ ++ S +++ S S D T +++
Sbjct: 181 SSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-----LEFSLN 130
N H S + F+ DG+TI + SD+ T+ +WN + G+ + S + FS +
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGT 190
I ++ D L W + L T + GH +++ ++ S +++ S S D T
Sbjct: 69 GQTIASASDDKTVKL-WNRNGQLLQT------LTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 191 ARVFE 195
+++
Sbjct: 122 VKLWN 126
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 60/222 (27%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
+ H D+ FS DGQ +AS G D T+ ++ A
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCG--------------------------ADKTLQVFKA 651
Query: 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
+ G L H + C F++D I T S + + IW+ G+ H S
Sbjct: 652 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS----- 706
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLV--TGCVD--------------GKVDGHIDAIQSL 173
+ V C + S +L+ TG D + GH +++
Sbjct: 707 ----------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 174 SVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215
S E L S S DGT R++++ R A + S + K FFL
Sbjct: 757 RFSPDDELLASCSADGTLRLWDV---RSANERKSINVKRFFL 795
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D T +W+ D + L+ GH + C F+ DG + TG DN + IWN G+ H+
Sbjct: 1113 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 121 RRSSLE 126
S+E
Sbjct: 1173 APISVE 1178
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTS 137
GH + FT DGKT+ + S+++ + +WN + G+ A + + +F L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL-------- 1059
Query: 138 LYDGVTCLSWP--GTSKY--LVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARV 193
L D LSW GT K ++TG ++ H + S ++S+ S S D TA++
Sbjct: 1060 LQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1118
Query: 194 F 194
+
Sbjct: 1119 W 1119
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 36/206 (17%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
+NQ + + + GH +S + FS D +LLAS G ++ D S N R I
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN-------ERKSIN 789
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG--ENFH 118
++ + D + + + C ++ DG I + N L G H
Sbjct: 790 VKRFFLSSEDPPEDVEVI------VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 843
Query: 119 AIRRSSLEFSLNYWMICT-SLYDGVTCLS--------WPGTSKYLVTGCVDGKVDGHIDA 169
S++++ C S YD + ++ W S+ V C GH+
Sbjct: 844 TGHHSTIQY-------CDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-----RGHLSW 891
Query: 170 IQSLSVSAIRESLVSVSVDGTARVFE 195
+ + S S ++ S D T RV+E
Sbjct: 892 VHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 33 GFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92
G H +Q D S + + + V +WN D + GH S + F+
Sbjct: 845 GHHSTIQYCDFSPYDHLAVI-----ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 899
Query: 93 DGKTICTGSDNATLSIWNPK 112
DG + T SD+ T+ +W K
Sbjct: 900 DGSSFLTASDDQTIRVWETK 919
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 4 GDWASEILGHKDSFSSLAFSTDGQLLAS-----------GGFHGLVQNRDTSSRNLQCTV 52
G+ +I H+D AFS+D +A+ LV D S + C
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 713
Query: 53 EGPRG-------GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT 105
+ G D + +W+ ++ N GH + + F+ D + + + S + T
Sbjct: 714 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 773
Query: 106 LSIWNPKGGENFHAI 120
L +W+ + +I
Sbjct: 774 LRLWDVRSANERKSI 788
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 60/222 (27%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
+ H D+ FS DGQ +AS G D T+ ++ A
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCG--------------------------ADKTLQVFKA 644
Query: 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
+ G L H + C F++D I T S + + IW+ G+ H S
Sbjct: 645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHS----- 699
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLV--TGCVD--------------GKVDGHIDAIQSL 173
+ V C + S +L+ TG D + GH +++
Sbjct: 700 ----------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 174 SVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215
S E L S S DGT R++++ R A + S + K FFL
Sbjct: 750 RFSPDDELLASCSADGTLRLWDV---RSANERKSINVKRFFL 788
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D T +W+ D + L+ GH + C F+ DG + TG DN + IWN G+ H+
Sbjct: 1106 DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 121 RRSSLE 126
S+E
Sbjct: 1166 APISVE 1171
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTS 137
GH + FT DGKT+ + S+++ + +WN + G+ A + + +F L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL-------- 1052
Query: 138 LYDGVTCLSWP--GTSKY--LVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARV 193
L D LSW GT K ++TG ++ H + S ++S+ S S D TA++
Sbjct: 1053 LQDS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKI 1111
Query: 194 F 194
+
Sbjct: 1112 W 1112
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 78/206 (37%), Gaps = 36/206 (17%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIE 60
+NQ + + + GH +S + FS D +LLAS G ++ D S N R I
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN-------ERKSIN 782
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG--ENFH 118
++ + D + + + C ++ DG I + N L G H
Sbjct: 783 VKRFFLSSEDPPEDVEVI------VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836
Query: 119 AIRRSSLEFSLNYWMICT-SLYDGVTCLS--------WPGTSKYLVTGCVDGKVDGHIDA 169
S++++ C S YD + ++ W S+ V C GH+
Sbjct: 837 TGHHSTIQY-------CDFSPYDHLAVIALSQYCVELWNIDSRLKVADC-----RGHLSW 884
Query: 170 IQSLSVSAIRESLVSVSVDGTARVFE 195
+ + S S ++ S D T RV+E
Sbjct: 885 VHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 4 GDWASEILGHKDSFSSLAFSTDGQLLAS-----------GGFHGLVQNRDTSSRNLQCTV 52
G+ +I H+D AFS+D +A+ LV D S + C
Sbjct: 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCH 706
Query: 53 EGPRG-------GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT 105
+ G D + +W+ ++ N GH + + F+ D + + + S + T
Sbjct: 707 FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766
Query: 106 LSIWNPKGGENFHAI 120
L +W+ + +I
Sbjct: 767 LRLWDVRSANERKSI 781
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 33 GFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92
G H +Q D S + + + V +WN D + GH S + F+
Sbjct: 838 GHHSTIQYCDFSPYDHLAVI-----ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP 892
Query: 93 DGKTICTGSDNATLSIWNPK 112
DG + T SD+ T+ +W K
Sbjct: 893 DGSSFLTASDDQTIRVWETK 912
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 80/222 (36%), Gaps = 60/222 (27%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
+ H D+ FS DGQ +AS G D T+ ++ A
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCG--------------------------ADKTLQVFKA 650
Query: 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
+ G L H + C F+TD + I T S + + IWN GE H S
Sbjct: 651 ETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHS----- 705
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLV--TGCVD--------------GKVDGHIDAIQSL 173
+ V C + +S +L+ TG D + GH +++
Sbjct: 706 ----------EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755
Query: 174 SVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215
S + L S S DGT ++++ A + S + K FFL
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATS---ANERKSINVKQFFL 794
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH 118
D T +W+ D L+ GH + C F+ D + TG DN + IWN GE H
Sbjct: 1112 DKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 20/162 (12%)
Query: 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHG-----------LVQNRDTSSRNLQCTV 52
G+ EI H+D AFSTD + +A+ LV D S + C
Sbjct: 653 GEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCH 712
Query: 53 EGPRG-------GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT 105
G D + +W+ ++ N GH + + F+ D K + + S + T
Sbjct: 713 FTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGT 772
Query: 106 LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147
L +W+ +I +F LN + V C SW
Sbjct: 773 LKLWDATSANERKSINVK--QFFLNLEDPQEDMEVIVKCCSW 812
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 33 GFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92
G H +Q D S +N V + V +WN D + + GH S + F+
Sbjct: 844 GHHSTIQYCDFSPQNHLAVV-----ALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP 898
Query: 93 DGKTICTGSDNATLSIWNPK 112
DG + T SD+ T+ +W K
Sbjct: 899 DGSSFLTSSDDQTIRLWETK 918
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 29/139 (20%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV-------- 52
+NQ + + + GH +S + FS D +LLAS G ++ D +S N + ++
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 795
Query: 53 -EGPRGGIE----------DSTVWMWNADRGAYL----------NMFSGHGSGLTCGDFT 91
E P+ +E D M A +L + +GH S + DF+
Sbjct: 796 LEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 92 TDGKTICTGSDNATLSIWN 110
+ +WN
Sbjct: 856 PQNHLAVVALSQYCVELWN 874
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 90 FTTDGKTICTGSDNATLSIWN 110
FT D KT+ + SD+A + +WN
Sbjct: 1017 FTADEKTLISSSDDAEIQVWN 1037
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 20/132 (15%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE-----------GPRG 57
+ H D S++ F+ DG L+ S + GL + DT+S + L+ ++ P G
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 58 -----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTGSDNATLSIW 109
D+T+ +W+ +G L ++GH + C +F+ T GK I +GS++ + IW
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 110 NPKGGENFHAIR 121
N + E ++
Sbjct: 268 NLQTKEIVQKLQ 279
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 55/202 (27%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
+ GH + SS+ FS +G+ LAS L++ +W A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIK--------------------------IWGA 55
Query: 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
G + SGH G++ +++D + + SD+ TL IW+ G+ ++ S
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----- 110
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV 175
NY V C ++ S +V+G D V H D + ++
Sbjct: 111 NY----------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 176 SAIRESLVSVSVDGTARVFEIA 197
+ +VS S DG R+++ A
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA 182
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--------- 54
G + I GHK S +A+S+D LL S ++ D SS T++G
Sbjct: 58 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 117
Query: 55 --PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLS 107
P+ G D +V +W+ G L H ++ F DG I + S +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 108 IWNPKGGE 115
IW+ G+
Sbjct: 178 IWDTASGQ 185
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 55/202 (27%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
+ GH + SS+ FS +G+ LAS L++ +W A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIK--------------------------IWGA 55
Query: 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL 129
G + SGH G++ +++D + + SD+ TL IW+ G+ ++ S
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS----- 110
Query: 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV 175
NY V C ++ S +V+G D V H D + ++
Sbjct: 111 NY----------VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHF 160
Query: 176 SAIRESLVSVSVDGTARVFEIA 197
+ +VS S DG R+++ A
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTA 182
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVE-----------GPRG 57
+ H D S++ F+ DG L+ S + GL + DT+S + L+ ++ P G
Sbjct: 148 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG 207
Query: 58 -----GIEDSTVWMWNADRGAYLNMFSGHGSGLTC--GDFT-TDGKTICTGSDNATLSIW 109
D+ + +W+ +G L ++GH + C +F+ T GK I +GS++ + IW
Sbjct: 208 KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 110 NPKGGENFHAIR 121
N + E ++
Sbjct: 268 NLQTKEIVQKLQ 279
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--------- 54
G + I GHK S +A+S+D LL S ++ D SS T++G
Sbjct: 58 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCN 117
Query: 55 --PRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLS 107
P+ G D +V +W+ G L H ++ F DG I + S +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 108 IWNPKGGE 115
IW+ G+
Sbjct: 178 IWDTASGQ 185
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 58 GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
G D T+ +WNA+ G ++ GH S + C K + +GS +ATL +W+ + G+
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCL 232
Query: 118 HAIRRSSLEFSLNYW---MICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLS 174
H + + + + YD + + P T L T + GH + + SL
Sbjct: 233 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT------LQGHTNRVYSLQ 286
Query: 175 VSAIRESLVSVSVDGTARVFEI 196
I +VS S+D + RV+++
Sbjct: 287 FDGIH--VVSGSLDTSIRVWDV 306
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 21/121 (17%)
Query: 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---GIE-------- 60
GH + SL F DG + SG ++ D + N T+ G + G+E
Sbjct: 277 GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 334
Query: 61 ---DSTVWMWNADRGAYLNMFSG---HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG 114
DSTV +W+ G L G H S +TC F + + T SD+ T+ +W+ K G
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTG 392
Query: 115 E 115
E
Sbjct: 393 E 393
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 58 GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
G D V +W+ + L+ GH + + F DG + +GS + ++ +W+ + G
Sbjct: 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312
Query: 118 HAI 120
H +
Sbjct: 313 HTL 315
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 66/213 (30%)
Query: 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMF 78
S+ FS DG+ LA+G ED + +W+ + + +
Sbjct: 128 SVCFSPDGKFLATGA--------------------------EDRLIRIWDIENRKIVMIL 161
Query: 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138
GH + D+ G + +GS + T+ IW+ + G+ SL S+
Sbjct: 162 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-------CSLTLSIE-------- 206
Query: 139 YDGVTCLSW-PGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSVS 176
DGVT ++ PG KY+ G +D V GH D++ S+ +
Sbjct: 207 -DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 177 AIRESLVSVSVDGTARVFEI--AEFRRATKAPS 207
+S+VS S+D + +++ + A + +K P+
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 14/103 (13%)
Query: 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR 71
GHKDS S+ F+ DGQ + SG V+ + + N + + P G + T
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT-------- 305
Query: 72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG 114
+ GH + T + + I +GS + + W+ K G
Sbjct: 306 ------YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D ++ +WN G F GH + F+ D + I +G + L +WN K GE H +
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTL 146
Query: 121 RRSSLEFSLNYWMICTSL---YDGVTCLS--WPGTSKY--LVTGCVDGKVDGHIDAIQSL 173
R + W+ C D +S W K L TG + + GH + + S+
Sbjct: 147 SRG----AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV 202
Query: 174 SVSAIRESLVSVSVDGTARVFEIAE 198
+VS S DG AR++++ +
Sbjct: 203 TVSPDGSLCASSDKDGVARLWDLTK 227
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 25/166 (15%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGG--------------FHGLVQNRDT--- 43
+ G + LGH S+AFS D + + SGG H L + T
Sbjct: 96 LQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWV 155
Query: 44 SSRNLQCTVEGP--RGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS 101
S +++ P G D+ V +W+ G + GH + +T + DG ++C S
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG-SLCASS 214
Query: 102 D-NATLSIWNPKGGENFHAIRR----SSLEFSLNYWMICTSLYDGV 142
D + +W+ GE + + + FS N + +C + G+
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGI 260
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 31/166 (18%)
Query: 4 GDWASEILGHKDSFSSLAFSTDGQLLASGG---------FHGL--VQNRDTSSRNLQCTV 52
GD+ + GH DS ++F G+LLAS F G ++ N+
Sbjct: 140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199
Query: 53 EGPRG-----GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLS 107
P G D T+ MW G + F+GH + DG I + S++ T+
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259
Query: 108 IWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153
+W E +R V C+SW S Y
Sbjct: 260 VWVVATKECKAELREHR---------------HVVECISWAPESSY 290
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 58 GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
G D T+ MW+ G L GH + + F + GK I + +D+ TL +W+ K
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163
+ + VT L + T+ Y+VTG VD V
Sbjct: 374 KTL---------------NAHEHFVTSLDFHKTAPYVVTGSVDQTV 404
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA 119
ED+T+ +W+ + G + GH + F GK + + S + T+ +W+ +G F
Sbjct: 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG---FEC 184
Query: 120 IR 121
IR
Sbjct: 185 IR 186
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 32/157 (20%)
Query: 54 GPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
GP G D W+ R SGH S +T F + + S++AT+ +W+ +
Sbjct: 83 GPLGQKRDPKEWI---PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET 139
Query: 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD--------- 164
G+ ++ + D V +S+ + K L + D +
Sbjct: 140 GDFERTLKGHT---------------DSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC 184
Query: 165 -----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196
GH + S+S+ + +VS S D T +++E+
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
+D T+ +W+ + + H +T DF + TGS + T+ +W
Sbjct: 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 26/163 (15%)
Query: 58 GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT--TDGKTICTGSDNATLSIWN-PK-- 112
G D TV +W+ +G ++F GH S + C D + K I TGS + TL +W PK
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 113 -----GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK----- 162
G E+ + + + E + + + V +S G +V+G D
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWD 296
Query: 163 ---------VDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196
+ GH D I S R+ +S S+D T R++++
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 58 GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
G D+T+ +W+ + L + SGH + + + K + S + T+ IW+ + GE
Sbjct: 286 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE-- 343
Query: 118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDG 165
L Y + + G+ LS K+LV+ DG + G
Sbjct: 344 -----------LMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRG 376
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 58 GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT--TDGKTICTGSDNATLSIWN-PK-- 112
G D TV +W+ +G ++F GH S + C D + K I TGS + TL +W PK
Sbjct: 179 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 238
Query: 113 -----GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK----- 162
G E+ + + + E + + + V +S G +V+G D
Sbjct: 239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWD 296
Query: 163 ---------VDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196
+ GH D I S R+ +S S D T R++++
Sbjct: 297 VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 58 GIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117
G D+T+ +W+ + L + SGH + + + K + S + T+ IW+ + GE
Sbjct: 286 GSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGE-- 343
Query: 118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDG 165
L Y + + G+ LS K+LV+ DG + G
Sbjct: 344 -----------LXYTLQGHTALVGLLRLS----DKFLVSAAADGSIRG 376
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D + +W+ + F GH G +C D + DG + TG + T+ W+ + G
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 121 RRSSLEFSLNY 131
+S FSL Y
Sbjct: 222 DFTSQIFSLGY 232
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 41/180 (22%)
Query: 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS 123
VW W +R GH G+ D + + S +A + +W+ + G+ +I
Sbjct: 62 VWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG 121
Query: 124 -----SLEFSLNYWMICTSLYDG----------------------VTCLSWPGTSKYLVT 156
+L FS + + T + G + +++ KYL +
Sbjct: 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181
Query: 157 GCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202
G +DG + +GH I+SL+ S + LV+ S DG +++++ A
Sbjct: 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA 241
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 19 SLAFSTDGQLLASGGFHGLVQ-----------NRDTSSRNLQCTVEGPRG-----GIEDS 62
+LAFS D Q LA+G G V + DT + + P G G D
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG 186
Query: 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
+ +++ G L+ GH + F+ D + + T SD+ + I++
Sbjct: 187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54
GH SL FS D QLL + G ++ D NL T+ G
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG 246
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 33 GFHGL--VQNRDTSSRNLQCTVEGPR---GGIEDSTVWMWNADRGAYLNMFSGHGSGLTC 87
G H L + R +S+ + C + G+ D+T+ +W+ + + +GH + C
Sbjct: 119 GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 178
Query: 88 GDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
+ D + I TGS ++T+ +W+ GE + +
Sbjct: 179 LQY--DERVIITGSSDSTVRVWDVNTGEMLNTL 209
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------- 59
++GH+ + + + F D + + S ++ +TS+ T+ G + GI
Sbjct: 252 LVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLV 309
Query: 60 ----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
D+T+ +W+ + GA L + GH + C F D K I +G+ + + +W+
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 362
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 44/203 (21%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNA 69
+ GH + S+DGQ SG + G ++ +W+
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELR--------------------------LWDL 459
Query: 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN---------PKGGENFHAI 120
G F GH + F+ D + I + S + T+ +WN +GGE H
Sbjct: 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG-HRD 518
Query: 121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGC-VDGKVDGHIDAIQSLSVSAI 178
S + FS N +L + SW T K + ++ C + + GH + +++VS
Sbjct: 519 WVSCVRFSPN------TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 179 RESLVSVSVDGTARVFEIAEFRR 201
S DG ++++AE ++
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKK 595
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 26/160 (16%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D TV +WN + +GH ++ + DG +G + + +W+ G+ +++
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599
Query: 121 RRSS----LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ----- 171
+S L FS N + +C + G+ W SK +V D KVD +A +
Sbjct: 600 EANSVIHALCFSPNRYWLCAATEHGIKI--WDLESKSIVE---DLKVDLKAEAEKADNSG 654
Query: 172 ------------SLSVSAIRESLVSVSVDGTARVFEIAEF 199
SL+ SA +L S DG RV+ I +
Sbjct: 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLV 38
S + GH S++A S DG L ASGG G+V
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVV 585
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 26/112 (23%)
Query: 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIED 61
N G + GH S + S+DGQ SG + D
Sbjct: 51 NYGIPQRALRGHSHFVSDVVISSDGQFALSGSW--------------------------D 84
Query: 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
T+ +W+ G F GH + F++D + I +GS + T+ +WN G
Sbjct: 85 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 136
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 76/215 (35%), Gaps = 29/215 (13%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQ------------NRDTSSRNLQCTVEGPR 56
+GH S+AFS+D + + SG ++ ++ S + C P
Sbjct: 100 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 159
Query: 57 GGIE-------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIW 109
D V +WN GH L + DG +G + +W
Sbjct: 160 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Query: 110 NPKGGENFHAIR----RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV----TGCVDG 161
+ G++ + + ++L FS N + +C + G + W K +V +
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT--GPSIKIWDLEGKIIVDELKQEVIST 277
Query: 162 KVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196
SL+ SA ++L + D RV+++
Sbjct: 278 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 26/112 (23%)
Query: 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIED 61
N G + GH S + S+DGQ SG + D
Sbjct: 74 NYGIPQRALRGHSHFVSDVVISSDGQFALSGSW--------------------------D 107
Query: 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
T+ +W+ G F GH + F++D + I +GS + T+ +WN G
Sbjct: 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 41/215 (19%), Positives = 76/215 (35%), Gaps = 29/215 (13%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQ------------NRDTSSRNLQCTVEGPR 56
+GH S+AFS+D + + SG ++ ++ S + C P
Sbjct: 123 RFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182
Query: 57 GGIE-------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIW 109
D V +WN GH L + DG +G + +W
Sbjct: 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Query: 110 NPKGGENFHAIR----RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV----TGCVDG 161
+ G++ + + ++L FS N + +C + G + W K +V +
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAAT--GPSIKIWDLEGKIIVDELKQEVIST 300
Query: 162 KVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196
SL+ SA ++L + D RV+++
Sbjct: 301 SSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDF--TTDGKTICTGSDNATLSIWNPKGGENFH 118
D T +W+ + G L F GHG+ + C D + G T +G + +W+ + G+
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 119 AIR 121
A
Sbjct: 235 AFE 237
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 57 GGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIW 109
G D T+ +W+ +G+ +++ GH + ++ + DG C+GS + TL +W
Sbjct: 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Query: 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGP---RGGIEDSTVWMWNADRGAYLNMFSGHG 82
GQLL S FHG D +L + G GG D +W+ G + F H
Sbjct: 186 GQLLQS--FHG--HGADVLCLDLAPSETGNTFVSGGC-DKKAMVWDMRSGQCVQAFETHE 240
Query: 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR-------SSLEFSLNYWMIC 135
S + + G +GSD+AT +++ + + SS++FSL+ ++
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 136 TSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194
Y+ T W ++ G + GH + + +L VS + S S D T RV+
Sbjct: 301 AG-YNDYTINVWD-----VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 16/99 (16%)
Query: 36 GLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWN------ADRGAYLNMF--------SGH 81
GL +N +S L+ E +G +E+ + + A+R L F GH
Sbjct: 6 GLHENETLAS--LKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGH 63
Query: 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
G+ + C D+ D + I + S + + +W+ HA+
Sbjct: 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV 102
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 22/121 (18%)
Query: 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQ--------------NRDTSSRNL-----QC 50
+ GH LA+ +DG LASGG +VQ N + + + + Q
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 51 TVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICT--GSDNATLSI 108
+ GG D + WNA GA +N GS +T ++ K I + G + LSI
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 109 W 109
W
Sbjct: 332 W 332
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 57 GGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
G +D +W+A + + +GH + ++C T DG + TGS ++ L IWN
Sbjct: 298 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGG---------------FHGLVQNRDTSSRNLQCTVE 53
E+ GH S F D Q++ S G D S +L
Sbjct: 149 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 54 GPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
G D++ +W+ G F+GH S + F +G TGSD+AT +++ +
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157
+ ++ IC G+T +S+ + + L+ G
Sbjct: 269 DQELMTYSHDNI--------IC-----GITSVSFSKSGRLLLAG 299
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 57 GGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
G +D +W+A + + +GH + ++C T DG + TGS ++ L IWN
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGG---------------FHGLVQNRDTSSRNLQCTVE 53
E+ GH S F D Q++ S G D S +L
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 54 GPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
G D++ +W+ G F+GH S + F +G TGSD+AT +++ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157
+ ++ IC G+T +S+ + + L+ G
Sbjct: 258 DQELMTYSHDNI--------IC-----GITSVSFSKSGRLLLAG 288
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 57 GGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
G +D +W+A + + +GH + ++C T DG + TGS ++ L IWN
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGG---------------FHGLVQNRDTSSRNLQCTVE 53
E+ GH S F D Q++ S G D S +L
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 54 GPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
G D++ +W+ G F+GH S + F +G TGSD+AT +++ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157
+ ++ IC G+T +S+ + + L+ G
Sbjct: 258 DQELMTYSHDNI--------IC-----GITSVSFSKSGRLLLAG 288
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 57 GGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
G +D +W+A + + +GH + ++C T DG + TGS ++ L IWN
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGG---------------FHGLVQNRDTSSRNLQCTVE 53
E+ GH S F D Q++ S G D S +L
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 54 GPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
G D++ +W+ G F+GH S + F +G TGSD+AT +++ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157
+ ++ IC G+T +S+ + + L+ G
Sbjct: 258 DQELMTYSHDNI--------IC-----GITSVSFSKSGRLLLAG 288
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 57 GGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
G +D +W+A + + +GH + ++C T DG + TGS ++ L IWN
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 28/164 (17%)
Query: 9 EILGHKDSFSSLAFSTDGQLLASGG---------------FHGLVQNRDTSSRNLQCTVE 53
E+ GH S F D Q++ S G D S +L
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 54 GPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
G D++ +W+ G F+GH S + F +G TGSD+AT +++ +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157
+ ++ IC G+T +S+ + + L+ G
Sbjct: 258 DQELMTYSHDNI--------IC-----GITSVSFSKSGRLLLAG 288
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
D T+ +W+ G F GH S + D I +GS + T+ +W KG
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 11/143 (7%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D V WN ++ F GH S + + DG I + + + +WN + + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 121 RRS----SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ----S 172
SL FS N + + + G+ S +YLV + + G+ A + S
Sbjct: 235 SAQDEVFSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDD-LRPEFAGYSKAAEPHAVS 291
Query: 173 LSVSAIRESLVSVSVDGTARVFE 195
L+ SA ++L + D RV++
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVWQ 314
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54
+NQ ++ +GH + ++L S DG L+AS G G + + +++ T+
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
D T+ +W+ G F GH S + D I +GS + T+ +W KG
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG 138
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D V WN ++ F GH S + + DG I + + + +WN + + +
Sbjct: 175 DKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
Query: 121 RRS----SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ----S 172
SL FS N + + + G+ S +YLV + + G+ A + S
Sbjct: 235 SAQDEVFSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDD-LRPEFAGYSKAAEPHAVS 291
Query: 173 LSVSAIRESLVSVSVDGTARVFEI 196
L+ SA ++L + D RV+++
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLV 38
+NQ ++ +GH + ++L S DG L+AS G G +
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
D T+ +W+ G F GH S + D I +GS + T+ +W KG
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D V WN ++ F GH S + + DG I + + + +WN + + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 121 RRS----SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ----S 172
SL FS N + + + G+ S +YLV + + G+ A + S
Sbjct: 235 SAQDEVFSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDD-LRPEFAGYSKAAEPHAVS 291
Query: 173 LSVSAIRESLVSVSVDGTARVFEI 196
L+ SA ++L + D RV+++
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54
+NQ ++ +GH + ++L S DG L+AS G G + + +++ T+
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
D T+ +W+ G F GH S + D I +GS + T+ +W KG
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 132
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D V WN ++ F GH S + + DG I + + + +WN + + +
Sbjct: 169 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
Query: 121 RRS----SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ----S 172
SL FS N + + + G+ S +YLV + + G+ A + S
Sbjct: 229 SAQDEVFSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDD-LRPEFAGYSKAAEPHAVS 285
Query: 173 LSVSAIRESLVSVSVDGTARVFEI 196
L+ SA ++L + D RV+++
Sbjct: 286 LAWSADGQTLFAGYTDNVIRVWQV 309
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54
+NQ ++ +GH + ++L S DG L+AS G G + + +++ T+
Sbjct: 177 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
D T+ +W+ G F GH S + D I +GS + T+ +W KG
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D V WN ++ F GH S + + DG I + + + +WN + + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 121 RRS----SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ----S 172
SL FS N + + + G+ S +YLV + + G+ A + S
Sbjct: 235 SAQDEVFSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDD-LRPEFAGYSAAAEPHAVS 291
Query: 173 LSVSAIRESLVSVSVDGTARVFEI 196
L+ SA ++L + D RV+++
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV 52
+NQ ++ +GH + ++L S DG L+AS G G + + +++ T+
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113
D T+ +W+ G F GH S + D I +GS + T+ +W KG
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D V WN ++ F GH S + + DG I + + + +WN + + +
Sbjct: 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 121 RRS----SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQ----S 172
SL FS N + + + G+ S +YLV + + G+ A + S
Sbjct: 235 SAQDEVFSLAFSPNRYWLAAATATGIKVFSL--DPQYLVDD-LRPEFAGYSKAAEPHAVS 291
Query: 173 LSVSAIRESLVSVSVDGTARVFEI 196
L+ SA ++L + D RV+++
Sbjct: 292 LAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV 52
+NQ ++ +GH + ++L S DG L+AS G G + + +++ T+
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 10 ILGHKDSFSSLAFSTDGQLLA---------------SGGFHGLVQNRDTSSRNLQCTVEG 54
I GH++ +A+S DG LA SG + + S++++ +
Sbjct: 103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162
Query: 55 PRGGI-----EDSTVWMWNA--DRGAYLNMFSGHGSGLTCGDF-TTDGK-TICTGSDNAT 105
P + D TV +W D + + +GH + DF T+G +C+GSD++T
Sbjct: 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222
Query: 106 LSIWNPKGGEN 116
+ +W G +
Sbjct: 223 VRVWKYMGDDE 233
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGG----ENFHAIRRSSLEFSLNYWMICTSLYD 140
+TC ++ DG +I TG +N L +WN G NFH S++++ + I + +
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 141 GVTCL 145
VT L
Sbjct: 171 NVTIL 175
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 51 TVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
+ GP+G I +++ GH ++ +F K + + SD+ TL IW+
Sbjct: 221 VIPGPKGAI-----FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
+D T+ +W+ + + GH S ++ F I +GS++ TL IWN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
+D T+ +W+ + + GH S ++ F I +GS++ TL IWN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
+D T+ +W+ + + GH S ++ F I +GS++ TL IWN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110
+D T+ +W+ + + GH S ++ F I +GS++ TL IWN
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 55/152 (36%), Gaps = 23/152 (15%)
Query: 55 PRGGIED-----STVWMWNADRGA------YLNMFSGHGSGLTCG-DFTTDGKTICTGSD 102
PRG +ED V + NA G + G G T G DF KT+ +
Sbjct: 16 PRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI--KTVEINGE 73
Query: 103 NATLSIWNPKGGENFHAIR----RSSLEFSLNYWMICTSLYDGVTCL-SW-PGTSKYLVT 156
L IW+ G E F +I RS+ L Y + C + CL W +Y
Sbjct: 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE---ESFRCLPEWLREIEQYASN 130
Query: 157 GCVDGKVDGHIDAIQSLSVSAIRESLVSVSVD 188
+ V ID + VS R S + D
Sbjct: 131 KVITVLVGNKIDLAERREVSQQRAEEFSEAQD 162
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120
D T+ +W+ G F GH S + F+ D + I + + +WN G F +
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA 156
Query: 121 RRSS 124
+ +
Sbjct: 157 EKEN 160
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-----------PRGGI-- 59
H D LA DG ++ GL++ D + ++ T EG P G I
Sbjct: 183 HNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVS 241
Query: 60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN 103
ED TV +W+ + G+ + + + D ++G I SDN
Sbjct: 242 CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDN 287
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 18/158 (11%)
Query: 14 KDSFSSLAFSTDGQLLAS-GGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRG 72
KDS +S+ +S +G+ L + G G + + D C G D ++ +W+ G
Sbjct: 52 KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVT-----GSADYSIKLWDVSNG 106
Query: 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLN-- 130
+ + + +F+ G DN + NP G N + I R S L
Sbjct: 107 QCVATWKS-PVPVKRVEFSPCGNYFLAILDNV---MKNP-GSINIYEIERDSATHELTKV 161
Query: 131 -----YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163
+ +I D T W KY++ G DGK+
Sbjct: 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199
>pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa
Lyase, Northeast Structural Genomics Target Sr181.
pdb|1YDO|B Chain B, Crystal Structure Of The Bacillis Subtilis Hmg-Coa
Lyase, Northeast Structural Genomics Target Sr181.
pdb|1YDO|C Chain C, Crystal Structure Of The Bacillis Subtilis Hmg-Coa
Lyase, Northeast Structural Genomics Target Sr181.
pdb|1YDO|D Chain D, Crystal Structure Of The Bacillis Subtilis Hmg-Coa
Lyase, Northeast Structural Genomics Target Sr181
Length = 307
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 54 GPRGGIEDSTVWMWNADRGAYLNMFSGHG 82
GPR G+++ VW+ D+ ++N S G
Sbjct: 13 GPRDGLQNEPVWIATEDKITWINQLSRTG 41
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 61 DSTVWMWNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA 119
D+TV +W+ + + GH + F DG+ TGSD+ T +++ + G
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Query: 120 IRR 122
R
Sbjct: 287 YNR 289
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 81 HGSGLTCGDFTTDGKTICTGSDNATLSIW 109
H ++C ++DG +CTGS + L IW
Sbjct: 343 HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNP 111
ST+ ++ G + M GH + C F ++ + + +GS + + W P
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,966,001
Number of Sequences: 62578
Number of extensions: 297433
Number of successful extensions: 1238
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 270
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)