Query 043942
Match_columns 216
No_of_seqs 363 out of 1266
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 09:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 7E-38 1.5E-42 222.9 18.3 212 2-214 145-456 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-37 4.9E-42 222.4 14.3 199 2-215 205-436 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-37 2.4E-42 224.0 12.3 178 3-195 250-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 2.4E-36 5.2E-41 215.2 19.0 192 6-213 107-413 (480)
5 KOG0263 Transcription initiati 100.0 6.1E-36 1.3E-40 229.2 19.3 180 5-199 442-651 (707)
6 KOG0286 G-protein beta subunit 100.0 9.6E-35 2.1E-39 200.4 22.5 194 6-214 47-320 (343)
7 KOG0279 G protein beta subunit 100.0 1.1E-33 2.4E-38 193.9 20.0 187 2-204 51-269 (315)
8 KOG0273 Beta-transducin family 100.0 7.3E-33 1.6E-37 201.8 20.3 191 3-208 265-493 (524)
9 KOG0279 G protein beta subunit 100.0 5.2E-32 1.1E-36 185.7 22.9 190 4-207 5-232 (315)
10 KOG0315 G-protein beta subunit 100.0 2.6E-32 5.7E-37 184.7 20.3 196 5-210 74-301 (311)
11 KOG0286 G-protein beta subunit 100.0 4.5E-32 9.8E-37 187.2 19.3 177 5-195 136-343 (343)
12 KOG0295 WD40 repeat-containing 100.0 3.5E-32 7.6E-37 192.6 13.9 195 2-211 138-378 (406)
13 KOG0291 WD40-repeat-containing 100.0 4.7E-31 1E-35 202.1 20.9 184 5-204 341-619 (893)
14 KOG0315 G-protein beta subunit 100.0 3.9E-30 8.5E-35 174.2 20.9 191 2-208 28-257 (311)
15 KOG0316 Conserved WD40 repeat- 100.0 5.3E-30 1.1E-34 172.4 20.5 206 6-211 9-271 (307)
16 KOG0292 Vesicle coat complex C 100.0 3.2E-31 6.9E-36 206.3 16.7 212 4-215 41-298 (1202)
17 KOG0285 Pleiotropic regulator 100.0 4E-31 8.7E-36 187.3 15.2 190 5-210 142-361 (460)
18 KOG0284 Polyadenylation factor 100.0 3.7E-32 8E-37 195.0 9.8 176 8-198 173-381 (464)
19 KOG0266 WD40 repeat-containing 100.0 7.5E-30 1.6E-34 197.3 21.5 188 6-208 195-420 (456)
20 KOG0263 Transcription initiati 100.0 2E-30 4.3E-35 199.2 17.9 192 7-213 371-623 (707)
21 KOG0282 mRNA splicing factor [ 100.0 3.4E-31 7.5E-36 193.5 12.2 188 5-208 205-473 (503)
22 KOG0643 Translation initiation 100.0 1.3E-29 2.8E-34 173.3 18.3 181 3-198 41-318 (327)
23 KOG0266 WD40 repeat-containing 100.0 5.1E-29 1.1E-33 192.7 22.9 188 8-210 152-377 (456)
24 KOG0318 WD40 repeat stress pro 100.0 1.1E-28 2.3E-33 182.4 23.0 201 2-202 220-565 (603)
25 KOG0284 Polyadenylation factor 100.0 8.4E-31 1.8E-35 188.1 11.4 181 9-205 133-345 (464)
26 KOG1446 Histone H3 (Lys4) meth 100.0 4.4E-28 9.5E-33 169.1 24.1 206 2-207 2-272 (311)
27 KOG0285 Pleiotropic regulator 100.0 1.2E-29 2.6E-34 179.9 16.4 187 1-203 180-395 (460)
28 KOG0265 U5 snRNP-specific prot 100.0 1.9E-29 4.1E-34 174.8 16.8 190 7-212 83-311 (338)
29 PTZ00421 coronin; Provisional 100.0 4.3E-28 9.2E-33 187.5 25.1 180 9-203 70-296 (493)
30 KOG0645 WD40 repeat protein [G 100.0 4.9E-28 1.1E-32 165.7 22.1 179 4-197 4-225 (312)
31 KOG0296 Angio-associated migra 100.0 2E-28 4.3E-33 173.7 19.6 212 1-213 93-372 (399)
32 KOG0282 mRNA splicing factor [ 100.0 1E-29 2.3E-34 185.8 12.9 193 3-195 247-503 (503)
33 KOG0291 WD40-repeat-containing 100.0 2.6E-28 5.7E-33 187.2 20.7 125 60-199 328-510 (893)
34 cd00200 WD40 WD40 domain, foun 100.0 1.5E-27 3.3E-32 173.8 23.7 184 7-205 2-215 (289)
35 KOG0265 U5 snRNP-specific prot 100.0 1.2E-28 2.7E-33 170.8 15.7 180 6-201 39-250 (338)
36 KOG0283 WD40 repeat-containing 100.0 1.1E-28 2.4E-33 190.8 17.2 182 7-206 259-541 (712)
37 KOG0281 Beta-TrCP (transducin 100.0 7.5E-30 1.6E-34 180.6 8.9 176 3-201 226-432 (499)
38 KOG0319 WD40-repeat-containing 100.0 1.8E-28 4E-33 187.4 16.0 193 9-216 360-596 (775)
39 KOG0295 WD40 repeat-containing 100.0 3.4E-28 7.4E-33 172.5 16.1 177 5-196 184-405 (406)
40 cd00200 WD40 WD40 domain, foun 100.0 1.8E-26 3.8E-31 168.2 25.4 192 3-209 40-261 (289)
41 KOG0276 Vesicle coat complex C 100.0 1.4E-27 3E-32 180.1 19.4 197 6-202 5-262 (794)
42 KOG0318 WD40 repeat stress pro 100.0 5.3E-27 1.2E-31 173.6 22.1 190 1-202 46-355 (603)
43 KOG0319 WD40-repeat-containing 100.0 6.7E-28 1.5E-32 184.3 17.7 117 1-117 91-227 (775)
44 PLN00181 protein SPA1-RELATED; 100.0 6.5E-27 1.4E-31 192.6 24.6 179 2-196 563-792 (793)
45 KOG0278 Serine/threonine kinas 100.0 8.6E-29 1.9E-33 168.0 11.0 180 3-201 90-301 (334)
46 KOG0645 WD40 repeat protein [G 100.0 1.8E-26 3.9E-31 158.1 20.1 171 12-197 59-311 (312)
47 KOG0274 Cdc4 and related F-box 100.0 1.3E-26 2.8E-31 179.9 21.6 185 3-207 237-451 (537)
48 PTZ00420 coronin; Provisional 100.0 7.2E-26 1.6E-30 176.4 25.5 180 5-200 65-296 (568)
49 PLN00181 protein SPA1-RELATED; 100.0 6.1E-26 1.3E-30 186.9 26.0 172 10-198 479-691 (793)
50 KOG0268 Sof1-like rRNA process 100.0 7.8E-28 1.7E-32 170.8 11.6 198 6-203 58-351 (433)
51 KOG0275 Conserved WD40 repeat- 100.0 6.8E-28 1.5E-32 169.5 11.1 183 12-209 211-479 (508)
52 KOG0305 Anaphase promoting com 100.0 8.6E-27 1.9E-31 175.7 17.7 184 3-201 206-465 (484)
53 KOG0277 Peroxisomal targeting 100.0 2.8E-27 6.1E-32 160.8 12.7 177 5-196 95-308 (311)
54 KOG0294 WD40 repeat-containing 100.0 2.8E-26 6.1E-31 160.2 17.9 191 6-199 35-283 (362)
55 KOG0277 Peroxisomal targeting 99.9 8.9E-27 1.9E-31 158.4 13.1 175 13-202 59-270 (311)
56 KOG0273 Beta-transducin family 99.9 1.1E-25 2.4E-30 164.6 19.3 184 15-215 236-458 (524)
57 KOG0313 Microtubule binding pr 99.9 6.9E-26 1.5E-30 161.7 17.7 195 3-214 133-394 (423)
58 KOG0306 WD40-repeat-containing 99.9 1.8E-26 3.9E-31 177.1 15.7 181 3-198 443-665 (888)
59 KOG0296 Angio-associated migra 99.9 1.1E-25 2.3E-30 159.9 17.7 160 6-206 56-229 (399)
60 KOG0643 Translation initiation 99.9 3.1E-25 6.8E-30 151.9 19.1 179 9-203 5-226 (327)
61 KOG0264 Nucleosome remodeling 99.9 1E-25 2.2E-30 163.8 17.6 178 6-198 169-405 (422)
62 KOG0641 WD40 repeat protein [G 99.9 1.1E-24 2.4E-29 146.4 20.4 174 9-197 84-349 (350)
63 KOG1407 WD40 repeat protein [F 99.9 1.9E-25 4E-30 152.5 16.5 165 9-188 59-293 (313)
64 KOG0310 Conserved WD40 repeat- 99.9 9.3E-26 2E-30 165.4 15.5 178 10-203 64-274 (487)
65 KOG1407 WD40 repeat protein [F 99.9 4.5E-25 9.7E-30 150.7 16.7 185 8-209 14-231 (313)
66 KOG0973 Histone transcription 99.9 8.9E-25 1.9E-29 173.5 20.7 197 5-201 60-359 (942)
67 KOG0299 U3 snoRNP-associated p 99.9 3.4E-25 7.5E-30 161.5 15.4 186 11-213 199-427 (479)
68 KOG0772 Uncharacterized conser 99.9 2.1E-25 4.6E-30 165.0 14.0 187 6-202 159-399 (641)
69 KOG0275 Conserved WD40 repeat- 99.9 1.9E-26 4.1E-31 162.3 7.7 185 11-195 260-507 (508)
70 KOG0276 Vesicle coat complex C 99.9 1E-24 2.2E-29 164.7 17.3 190 2-207 85-308 (794)
71 KOG0306 WD40-repeat-containing 99.9 1.5E-24 3.2E-29 166.7 17.8 207 8-215 367-640 (888)
72 KOG2096 WD40 repeat protein [G 99.9 5.7E-25 1.2E-29 154.2 14.2 175 7-197 79-308 (420)
73 KOG0640 mRNA cleavage stimulat 99.9 2.5E-24 5.4E-29 150.6 17.3 184 8-204 106-342 (430)
74 KOG0281 Beta-TrCP (transducin 99.9 6.9E-26 1.5E-30 160.6 9.0 179 1-202 264-482 (499)
75 KOG0640 mRNA cleavage stimulat 99.9 2.1E-24 4.7E-29 151.0 15.0 180 5-197 163-426 (430)
76 KOG0293 WD40 repeat-containing 99.9 3.3E-24 7E-29 154.9 15.9 195 6-215 216-443 (519)
77 KOG0646 WD40 repeat protein [G 99.9 3.8E-24 8.2E-29 156.3 16.2 176 14-205 81-315 (476)
78 KOG0288 WD40 repeat protein Ti 99.9 2.3E-24 5E-29 155.4 14.7 178 5-194 210-458 (459)
79 KOG0647 mRNA export protein (c 99.9 7.6E-24 1.6E-28 147.4 16.3 191 13-204 26-288 (347)
80 KOG0292 Vesicle coat complex C 99.9 2.7E-24 6E-29 168.1 14.4 177 9-200 4-239 (1202)
81 KOG0288 WD40 repeat protein Ti 99.9 3.4E-25 7.3E-30 159.7 8.7 199 8-206 169-426 (459)
82 KOG0308 Conserved WD40 repeat- 99.9 3E-24 6.6E-29 162.6 13.7 196 13-214 20-260 (735)
83 KOG1274 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 163.0 18.6 180 12-198 11-263 (933)
84 KOG0289 mRNA splicing factor [ 99.9 2.2E-23 4.8E-28 151.4 17.0 179 15-206 220-428 (506)
85 KOG0289 mRNA splicing factor [ 99.9 5.6E-23 1.2E-27 149.3 17.1 193 2-209 249-476 (506)
86 KOG0639 Transducin-like enhanc 99.9 5.4E-24 1.2E-28 157.4 11.6 180 14-209 465-675 (705)
87 KOG0313 Microtubule binding pr 99.9 4.2E-23 9.1E-28 147.6 15.6 172 10-198 189-419 (423)
88 KOG0300 WD40 repeat-containing 99.9 5.2E-24 1.1E-28 149.7 10.6 185 1-201 177-390 (481)
89 KOG0310 Conserved WD40 repeat- 99.9 1.1E-22 2.4E-27 149.5 17.1 178 6-200 102-312 (487)
90 PTZ00421 coronin; Provisional 99.9 1.9E-22 4.1E-27 156.3 19.4 165 13-208 19-209 (493)
91 KOG1446 Histone H3 (Lys4) meth 99.9 5.2E-22 1.1E-26 138.9 19.3 185 1-199 87-305 (311)
92 KOG1036 Mitotic spindle checkp 99.9 3.8E-22 8.3E-27 139.2 18.4 195 14-209 13-274 (323)
93 KOG0278 Serine/threonine kinas 99.9 1.1E-22 2.3E-27 138.6 15.2 191 7-213 7-271 (334)
94 KOG4283 Transcription-coupled 99.9 8.2E-23 1.8E-27 142.2 14.8 176 11-202 40-281 (397)
95 KOG1332 Vesicle coat complex C 99.9 6.1E-23 1.3E-27 139.1 13.4 179 5-198 47-287 (299)
96 KOG0274 Cdc4 and related F-box 99.9 2.9E-22 6.3E-27 155.8 18.3 176 13-210 207-414 (537)
97 KOG0267 Microtubule severing p 99.9 5.1E-24 1.1E-28 163.1 7.7 181 9-204 23-233 (825)
98 KOG0973 Histone transcription 99.9 1E-22 2.2E-27 162.0 14.9 175 13-201 12-205 (942)
99 PTZ00420 coronin; Provisional 99.9 1.9E-21 4.1E-26 151.9 21.5 163 27-209 31-209 (568)
100 KOG0316 Conserved WD40 repeat- 99.9 2.3E-22 5E-27 135.8 13.8 178 1-196 88-298 (307)
101 KOG0269 WD40 repeat-containing 99.9 3.7E-23 8.1E-28 159.4 11.1 180 4-199 123-342 (839)
102 KOG0264 Nucleosome remodeling 99.9 3.8E-22 8.3E-27 145.3 15.5 172 12-198 122-348 (422)
103 KOG1332 Vesicle coat complex C 99.9 1.2E-22 2.5E-27 137.8 10.4 173 10-197 7-241 (299)
104 KOG0308 Conserved WD40 repeat- 99.9 3.9E-22 8.5E-27 151.3 14.3 144 5-163 108-279 (735)
105 KOG1408 WD40 repeat protein [F 99.9 9.9E-22 2.2E-26 151.1 16.4 175 12-198 457-714 (1080)
106 KOG0269 WD40 repeat-containing 99.9 1E-22 2.2E-27 157.1 10.7 147 17-201 90-254 (839)
107 KOG0293 WD40 repeat-containing 99.9 3.1E-21 6.8E-26 139.7 17.3 192 5-213 260-486 (519)
108 KOG1539 WD repeat protein [Gen 99.9 9.8E-21 2.1E-25 147.3 20.0 128 60-203 468-612 (910)
109 KOG0300 WD40 repeat-containing 99.9 2.6E-21 5.6E-26 136.2 15.2 178 6-200 264-479 (481)
110 KOG0772 Uncharacterized conser 99.9 1.3E-21 2.8E-26 145.2 13.5 174 9-195 263-485 (641)
111 KOG0283 WD40 repeat-containing 99.9 7.6E-21 1.6E-25 147.9 18.1 188 4-200 359-579 (712)
112 KOG0301 Phospholipase A2-activ 99.9 5E-21 1.1E-25 146.3 16.6 174 2-198 89-289 (745)
113 KOG0267 Microtubule severing p 99.9 1.2E-22 2.6E-27 155.8 6.9 167 7-188 63-259 (825)
114 KOG2445 Nuclear pore complex c 99.9 2.9E-20 6.3E-25 130.0 17.8 186 12-197 11-318 (361)
115 KOG0303 Actin-binding protein 99.9 3E-20 6.4E-25 133.9 18.3 176 9-200 76-297 (472)
116 KOG0650 WD40 repeat nucleolar 99.9 2E-21 4.3E-26 146.5 12.5 174 6-194 392-732 (733)
117 KOG4283 Transcription-coupled 99.9 8.7E-21 1.9E-25 132.2 14.5 152 11-163 98-270 (397)
118 KOG0302 Ribosome Assembly prot 99.9 5.7E-21 1.2E-25 136.8 13.4 157 4-198 201-379 (440)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-18 2.4E-23 128.9 25.3 204 2-207 19-289 (300)
120 KOG0301 Phospholipase A2-activ 99.9 4.4E-20 9.5E-25 141.2 17.7 191 3-215 3-225 (745)
121 KOG0639 Transducin-like enhanc 99.9 5.7E-21 1.2E-25 141.6 11.0 165 15-196 510-703 (705)
122 KOG0299 U3 snoRNP-associated p 99.9 3.1E-20 6.7E-25 135.9 14.1 181 7-203 135-362 (479)
123 KOG2055 WD40 repeat protein [G 99.9 2E-19 4.3E-24 131.9 17.9 178 5-197 248-512 (514)
124 KOG1063 RNA polymerase II elon 99.8 2.7E-20 5.8E-25 142.4 13.8 110 75-199 518-650 (764)
125 KOG1539 WD repeat protein [Gen 99.8 1.3E-19 2.9E-24 141.1 15.0 145 1-161 477-639 (910)
126 KOG0647 mRNA export protein (c 99.8 6.2E-19 1.3E-23 123.1 16.6 172 10-185 68-311 (347)
127 KOG1273 WD40 repeat protein [G 99.8 1.9E-19 4.2E-24 126.5 14.1 146 17-204 26-190 (405)
128 KOG0270 WD40 repeat-containing 99.8 7.1E-19 1.5E-23 128.4 16.7 168 17-200 176-407 (463)
129 KOG1007 WD repeat protein TSSC 99.8 4.5E-19 9.8E-24 123.3 14.7 178 5-198 113-362 (370)
130 KOG0302 Ribosome Assembly prot 99.8 2.3E-19 5E-24 128.6 13.0 143 9-190 252-432 (440)
131 KOG1009 Chromatin assembly com 99.8 1.7E-19 3.6E-24 130.4 12.0 107 6-122 57-163 (434)
132 KOG2096 WD40 repeat protein [G 99.8 1.2E-18 2.5E-23 122.9 15.5 174 12-195 185-400 (420)
133 KOG0305 Anaphase promoting com 99.8 7E-19 1.5E-23 133.2 15.0 139 9-163 296-455 (484)
134 KOG2110 Uncharacterized conser 99.8 4.5E-17 9.6E-22 116.7 22.6 133 15-163 88-242 (391)
135 KOG0321 WD40 repeat-containing 99.8 2.1E-18 4.6E-23 131.1 16.4 189 8-200 94-394 (720)
136 KOG2106 Uncharacterized conser 99.8 1.1E-17 2.4E-22 124.3 19.7 189 5-198 278-522 (626)
137 KOG0646 WD40 repeat protein [G 99.8 1.2E-18 2.6E-23 127.9 14.3 179 1-180 110-332 (476)
138 KOG0642 Cell-cycle nuclear pro 99.8 2.8E-18 6E-23 128.7 16.2 188 5-209 335-573 (577)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3E-17 6.6E-22 121.2 21.7 161 26-203 1-193 (300)
140 KOG0644 Uncharacterized conser 99.8 9.6E-20 2.1E-24 142.2 8.2 193 5-203 181-432 (1113)
141 KOG2106 Uncharacterized conser 99.8 2.5E-17 5.3E-22 122.5 20.1 143 7-163 361-515 (626)
142 KOG1188 WD40 repeat protein [G 99.8 5.1E-19 1.1E-23 125.4 10.8 113 2-114 58-198 (376)
143 KOG1524 WD40 repeat-containing 99.8 1.8E-18 4E-23 129.4 14.0 175 3-194 93-283 (737)
144 KOG2048 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 124.1 22.0 183 13-209 24-245 (691)
145 KOG0322 G-protein beta subunit 99.8 4.6E-19 1E-23 121.7 9.4 176 5-196 5-322 (323)
146 KOG1273 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 117.4 15.8 185 5-203 56-286 (405)
147 KOG0270 WD40 repeat-containing 99.8 3.6E-18 7.9E-23 124.7 13.4 177 11-203 240-455 (463)
148 KOG1036 Mitotic spindle checkp 99.8 3.5E-17 7.6E-22 114.7 17.1 170 12-186 52-293 (323)
149 KOG1034 Transcriptional repres 99.8 1.4E-17 3.1E-22 117.7 14.7 139 12-163 36-205 (385)
150 KOG0307 Vesicle coat complex C 99.8 1E-18 2.2E-23 140.3 9.7 181 5-200 107-330 (1049)
151 KOG1523 Actin-related protein 99.8 2E-17 4.3E-22 116.5 14.6 150 9-196 5-175 (361)
152 KOG1063 RNA polymerase II elon 99.8 1.3E-17 2.8E-22 127.9 13.8 159 7-197 518-699 (764)
153 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-17 2.3E-22 124.3 12.3 173 16-202 81-285 (673)
154 KOG0307 Vesicle coat complex C 99.8 2.4E-18 5.2E-23 138.2 9.5 181 14-207 64-294 (1049)
155 KOG4328 WD40 protein [Function 99.8 4.8E-17 1E-21 119.4 15.1 178 5-197 177-399 (498)
156 KOG2394 WD40 protein DMR-N9 [G 99.8 1.6E-17 3.5E-22 124.3 12.9 174 14-203 219-458 (636)
157 KOG1188 WD40 repeat protein [G 99.8 6.4E-17 1.4E-21 114.9 14.9 168 27-208 41-253 (376)
158 KOG0771 Prolactin regulatory e 99.8 1.7E-17 3.7E-22 120.5 12.3 155 18-199 148-356 (398)
159 KOG0290 Conserved WD40 repeat- 99.8 2.8E-17 6.1E-22 114.5 12.7 174 12-199 94-320 (364)
160 KOG4378 Nuclear protein COP1 [ 99.8 5.4E-17 1.2E-21 120.6 14.8 158 6-179 113-305 (673)
161 KOG1408 WD40 repeat protein [F 99.8 2.9E-17 6.3E-22 126.9 13.7 201 9-209 364-683 (1080)
162 KOG2048 WD40 repeat protein [G 99.8 2E-15 4.3E-20 115.8 23.1 185 8-201 62-279 (691)
163 KOG4328 WD40 protein [Function 99.8 2.6E-17 5.7E-22 120.8 12.3 185 6-203 226-456 (498)
164 KOG1445 Tumor-specific antigen 99.7 4.3E-17 9.3E-22 124.6 13.8 173 14-200 627-847 (1012)
165 KOG1274 WD40 repeat protein [G 99.7 1.8E-16 4E-21 125.1 17.7 168 14-194 96-297 (933)
166 KOG1034 Transcriptional repres 99.7 1.5E-16 3.2E-21 112.6 15.0 102 13-114 88-213 (385)
167 KOG2055 WD40 repeat protein [G 99.7 2.6E-16 5.6E-21 115.8 16.7 155 14-204 213-381 (514)
168 KOG1272 WD40-repeat-containing 99.7 1.7E-17 3.6E-22 122.2 10.5 171 16-203 131-329 (545)
169 KOG0641 WD40 repeat protein [G 99.7 4.1E-16 8.9E-21 105.5 16.0 150 2-163 171-343 (350)
170 KOG1538 Uncharacterized conser 99.7 2.2E-16 4.8E-21 121.4 16.5 180 2-198 41-294 (1081)
171 KOG2110 Uncharacterized conser 99.7 2.2E-15 4.8E-20 108.2 20.3 159 27-200 57-251 (391)
172 KOG2919 Guanine nucleotide-bin 99.7 3E-16 6.6E-21 111.0 15.6 169 15-198 105-328 (406)
173 KOG0294 WD40 repeat-containing 99.7 1.3E-16 2.7E-21 112.4 13.6 115 74-205 35-165 (362)
174 KOG2919 Guanine nucleotide-bin 99.7 1.3E-16 2.7E-21 112.9 13.5 176 16-200 51-284 (406)
175 KOG0649 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 103.2 18.7 180 6-197 54-274 (325)
176 PF08662 eIF2A: Eukaryotic tra 99.7 2E-15 4.3E-20 104.2 18.9 154 19-206 10-187 (194)
177 KOG1963 WD40 repeat protein [G 99.7 9.7E-16 2.1E-20 120.4 18.1 184 2-200 45-325 (792)
178 KOG0268 Sof1-like rRNA process 99.7 6.4E-17 1.4E-21 115.8 9.7 146 4-163 177-339 (433)
179 KOG1310 WD40 repeat protein [G 99.7 5.4E-17 1.2E-21 122.0 9.1 163 5-197 41-231 (758)
180 KOG1523 Actin-related protein 99.7 7.9E-16 1.7E-20 108.6 14.2 158 5-200 46-239 (361)
181 KOG1009 Chromatin assembly com 99.7 1.8E-16 3.9E-21 114.9 10.8 167 14-200 13-198 (434)
182 PRK01742 tolB translocation pr 99.7 4.2E-15 9.1E-20 115.0 18.2 186 4-208 193-414 (429)
183 KOG3881 Uncharacterized conser 99.7 3.9E-15 8.4E-20 107.6 16.4 182 14-212 105-335 (412)
184 KOG1524 WD40 repeat-containing 99.7 2.6E-16 5.6E-21 118.1 10.4 169 12-198 12-217 (737)
185 KOG0290 Conserved WD40 repeat- 99.7 4.2E-15 9.2E-20 103.8 15.0 145 5-159 187-356 (364)
186 KOG2111 Uncharacterized conser 99.7 1.8E-13 3.9E-18 96.8 22.9 142 5-163 86-250 (346)
187 KOG1538 Uncharacterized conser 99.7 1.2E-15 2.6E-20 117.5 11.3 137 16-196 14-161 (1081)
188 KOG1445 Tumor-specific antigen 99.7 3.1E-15 6.8E-20 114.6 12.6 181 6-201 71-297 (1012)
189 COG2319 FOG: WD40 repeat [Gene 99.6 4.6E-13 1E-17 102.6 24.1 183 6-204 100-321 (466)
190 COG2319 FOG: WD40 repeat [Gene 99.6 3.6E-13 7.8E-18 103.2 22.7 177 9-201 60-275 (466)
191 KOG0642 Cell-cycle nuclear pro 99.6 4.6E-15 1E-19 111.7 11.6 175 7-205 287-527 (577)
192 PRK03629 tolB translocation pr 99.6 3.5E-13 7.7E-18 104.3 21.8 185 4-206 188-414 (429)
193 KOG1007 WD repeat protein TSSC 99.6 1.2E-14 2.6E-19 101.6 12.2 178 9-214 58-263 (370)
194 PF08662 eIF2A: Eukaryotic tra 99.6 3.1E-14 6.8E-19 98.2 14.3 103 14-160 59-164 (194)
195 KOG1272 WD40-repeat-containing 99.6 1.3E-15 2.9E-20 112.3 7.6 170 3-189 199-401 (545)
196 KOG2139 WD40 repeat protein [G 99.6 6.2E-14 1.3E-18 100.8 15.3 147 11-198 193-384 (445)
197 KOG0303 Actin-binding protein 99.6 3.9E-15 8.6E-20 107.9 9.4 125 76-208 75-214 (472)
198 KOG0321 WD40 repeat-containing 99.6 7.7E-15 1.7E-19 112.1 11.3 150 19-203 54-254 (720)
199 PRK05137 tolB translocation pr 99.6 4.8E-13 1E-17 103.9 21.5 180 4-200 191-415 (435)
200 KOG2321 WD40 repeat protein [G 99.6 6.7E-14 1.5E-18 106.0 15.9 193 7-205 45-310 (703)
201 KOG2111 Uncharacterized conser 99.6 1.3E-12 2.8E-17 92.5 19.9 180 16-200 7-259 (346)
202 KOG4497 Uncharacterized conser 99.6 1.6E-14 3.4E-19 102.8 10.1 181 19-200 13-243 (447)
203 PRK11028 6-phosphogluconolacto 99.6 2.1E-12 4.5E-17 97.0 21.2 174 15-197 80-304 (330)
204 PRK02889 tolB translocation pr 99.6 3.2E-13 6.9E-18 104.6 16.8 158 4-201 185-364 (427)
205 KOG1587 Cytoplasmic dynein int 99.6 2E-13 4.3E-18 106.5 15.5 171 13-198 241-517 (555)
206 KOG2139 WD40 repeat protein [G 99.6 4.4E-13 9.5E-18 96.5 15.9 165 15-197 99-309 (445)
207 KOG0771 Prolactin regulatory e 99.6 8.7E-14 1.9E-18 101.5 12.1 150 6-175 178-355 (398)
208 PRK04922 tolB translocation pr 99.6 1.6E-12 3.4E-17 101.0 20.0 178 4-198 193-412 (433)
209 KOG1963 WD40 repeat protein [G 99.6 4.4E-13 9.5E-18 105.8 16.1 155 12-204 203-382 (792)
210 KOG4227 WD40 repeat protein [G 99.5 7.4E-14 1.6E-18 101.6 10.5 161 7-200 49-228 (609)
211 KOG0649 WD40 repeat protein [G 99.5 1.9E-12 4.2E-17 88.7 16.1 175 15-207 11-245 (325)
212 KOG1240 Protein kinase contain 99.5 1.2E-12 2.7E-17 106.9 16.8 175 3-203 1037-1231(1431)
213 KOG2394 WD40 protein DMR-N9 [G 99.5 7.9E-14 1.7E-18 104.9 9.2 104 5-149 281-384 (636)
214 PRK11028 6-phosphogluconolacto 99.5 1.2E-11 2.7E-16 92.8 21.2 183 6-199 27-260 (330)
215 KOG0974 WD-repeat protein WDR6 99.5 4.7E-13 1E-17 107.4 13.7 167 16-199 89-290 (967)
216 KOG2445 Nuclear pore complex c 99.5 1.2E-12 2.6E-17 92.3 13.5 157 6-163 104-312 (361)
217 KOG1517 Guanine nucleotide bin 99.5 7.1E-13 1.5E-17 107.0 13.8 170 19-200 1170-1384(1387)
218 KOG0322 G-protein beta subunit 99.5 1.3E-12 2.7E-17 90.5 10.8 135 14-163 150-317 (323)
219 PF02239 Cytochrom_D1: Cytochr 99.5 1.3E-10 2.7E-15 88.0 22.6 168 2-204 24-209 (369)
220 KOG4547 WD40 repeat-containing 99.5 1.8E-11 3.9E-16 93.2 17.5 160 24-198 3-221 (541)
221 TIGR02800 propeller_TolB tol-p 99.4 4.1E-11 8.9E-16 92.9 19.8 175 5-196 180-396 (417)
222 KOG0650 WD40 repeat nucleolar 99.4 6.4E-12 1.4E-16 96.0 14.6 111 75-201 393-558 (733)
223 KOG1310 WD40 repeat protein [G 99.4 6E-13 1.3E-17 100.7 8.4 112 75-200 43-181 (758)
224 KOG0644 Uncharacterized conser 99.4 1.5E-13 3.2E-18 108.4 5.2 188 2-206 220-477 (1113)
225 PRK00178 tolB translocation pr 99.4 5E-11 1.1E-15 92.7 18.6 157 4-200 188-366 (430)
226 KOG1354 Serine/threonine prote 99.4 1E-11 2.2E-16 89.1 12.3 185 14-207 25-312 (433)
227 KOG1517 Guanine nucleotide bin 99.4 3.4E-11 7.3E-16 97.6 16.4 171 15-199 1065-1289(1387)
228 PRK01742 tolB translocation pr 99.4 3.3E-11 7.2E-16 93.5 15.4 121 61-198 183-323 (429)
229 KOG1409 Uncharacterized conser 99.4 4.2E-11 9.1E-16 85.9 14.0 143 6-163 106-264 (404)
230 KOG3914 WD repeat protein WDR4 99.4 1.2E-11 2.5E-16 90.2 11.0 151 17-207 65-233 (390)
231 KOG4497 Uncharacterized conser 99.4 1.4E-10 3.1E-15 83.0 16.1 195 3-198 80-392 (447)
232 PRK04792 tolB translocation pr 99.4 1E-10 2.2E-15 91.1 16.9 153 8-200 211-385 (448)
233 KOG1334 WD40 repeat protein [G 99.4 2.6E-11 5.6E-16 90.6 12.4 199 5-203 133-430 (559)
234 PF00400 WD40: WD domain, G-be 99.3 5.7E-12 1.2E-16 63.6 5.9 39 4-42 1-39 (39)
235 KOG2321 WD40 repeat protein [G 99.3 5.1E-11 1.1E-15 90.8 13.3 163 1-199 162-345 (703)
236 PF02239 Cytochrom_D1: Cytochr 99.3 4.7E-09 1E-13 79.6 22.9 205 1-206 65-356 (369)
237 KOG4227 WD40 repeat protein [G 99.3 7.6E-11 1.7E-15 86.2 9.9 111 76-200 50-182 (609)
238 PRK01029 tolB translocation pr 99.2 3.4E-09 7.4E-14 82.1 19.1 180 7-201 177-407 (428)
239 PF15492 Nbas_N: Neuroblastoma 99.2 2.1E-09 4.5E-14 75.7 15.9 156 17-204 46-266 (282)
240 KOG0280 Uncharacterized conser 99.2 3.9E-10 8.5E-15 79.5 12.1 167 17-199 124-335 (339)
241 KOG1587 Cytoplasmic dynein int 99.2 3.1E-09 6.6E-14 83.5 18.3 159 36-197 222-428 (555)
242 PRK05137 tolB translocation pr 99.2 1.7E-09 3.7E-14 84.3 16.4 123 61-200 181-325 (435)
243 COG5170 CDC55 Serine/threonine 99.2 3E-10 6.5E-15 80.9 11.0 186 14-208 26-321 (460)
244 PRK02889 tolB translocation pr 99.2 5.1E-09 1.1E-13 81.4 18.8 146 10-196 235-402 (427)
245 KOG3881 Uncharacterized conser 99.2 1.5E-09 3.2E-14 79.3 14.1 137 15-166 149-317 (412)
246 KOG1240 Protein kinase contain 99.2 4.2E-09 9.1E-14 87.0 17.4 176 13-202 1097-1339(1431)
247 KOG2315 Predicted translation 99.2 7.1E-09 1.5E-13 79.0 17.5 168 12-198 163-391 (566)
248 PF10282 Lactonase: Lactonase, 99.2 2.1E-07 4.5E-12 70.4 25.7 174 15-197 87-322 (345)
249 PF00400 WD40: WD domain, G-be 99.2 1.5E-10 3.3E-15 58.3 6.0 39 72-110 1-39 (39)
250 PRK03629 tolB translocation pr 99.2 7.8E-09 1.7E-13 80.3 18.3 124 61-201 222-367 (429)
251 PRK04922 tolB translocation pr 99.2 3.7E-09 8.1E-14 82.3 16.3 124 61-201 227-372 (433)
252 KOG1064 RAVE (regulator of V-A 99.2 6.7E-10 1.4E-14 94.7 12.1 175 10-207 2204-2408(2439)
253 KOG1409 Uncharacterized conser 99.1 1E-09 2.2E-14 79.0 11.2 196 5-200 15-273 (404)
254 TIGR02658 TTQ_MADH_Hv methylam 99.1 4.1E-07 8.8E-12 68.1 25.4 193 2-205 35-338 (352)
255 PF07433 DUF1513: Protein of u 99.1 2.3E-07 4.9E-12 67.3 22.0 181 18-209 8-259 (305)
256 PRK04792 tolB translocation pr 99.1 2.1E-08 4.6E-13 78.3 17.6 148 16-205 263-432 (448)
257 KOG0974 WD-repeat protein WDR6 99.1 2E-09 4.3E-14 87.2 11.9 113 9-163 170-282 (967)
258 PRK04043 tolB translocation pr 99.1 5.4E-08 1.2E-12 75.2 19.1 145 16-200 189-360 (419)
259 KOG0309 Conserved WD40 repeat- 99.1 1.1E-09 2.4E-14 86.2 9.6 110 6-115 106-235 (1081)
260 PRK00178 tolB translocation pr 99.1 3.3E-08 7.2E-13 77.1 17.6 144 14-198 242-407 (430)
261 TIGR02800 propeller_TolB tol-p 99.1 4.3E-08 9.3E-13 76.1 18.0 122 62-200 214-357 (417)
262 COG4946 Uncharacterized protei 99.1 5.2E-08 1.1E-12 73.5 17.1 85 63-163 383-467 (668)
263 KOG2041 WD40 repeat protein [G 99.0 9.4E-10 2E-14 86.4 8.0 161 14-198 14-187 (1189)
264 KOG1354 Serine/threonine prote 99.0 7.8E-09 1.7E-13 74.7 11.0 150 12-163 162-353 (433)
265 KOG2695 WD40 repeat protein [G 99.0 2.1E-09 4.5E-14 77.5 7.7 131 14-207 252-386 (425)
266 KOG4190 Uncharacterized conser 99.0 1.1E-09 2.5E-14 83.7 6.6 165 7-203 728-912 (1034)
267 COG5354 Uncharacterized protei 99.0 8.3E-08 1.8E-12 72.7 15.8 101 81-199 273-397 (561)
268 KOG4714 Nucleoporin [Nuclear s 99.0 3.6E-09 7.9E-14 73.6 7.6 137 12-163 87-248 (319)
269 PF10282 Lactonase: Lactonase, 99.0 1.5E-06 3.4E-11 65.8 22.3 172 15-197 37-275 (345)
270 KOG1275 PAB-dependent poly(A) 99.0 1.1E-08 2.5E-13 82.3 11.1 152 26-195 147-340 (1118)
271 KOG1064 RAVE (regulator of V-A 98.9 3.7E-09 8E-14 90.3 8.4 104 15-121 2252-2375(2439)
272 KOG4547 WD40 repeat-containing 98.9 1.1E-07 2.3E-12 73.1 15.4 113 3-158 89-208 (541)
273 PF13360 PQQ_2: PQQ-like domai 98.9 3E-06 6.6E-11 60.6 22.5 192 2-202 11-235 (238)
274 PF04762 IKI3: IKI3 family; I 98.9 8.1E-08 1.7E-12 80.7 16.1 169 13-200 119-336 (928)
275 KOG0280 Uncharacterized conser 98.9 6.5E-07 1.4E-11 63.6 17.7 129 60-203 93-248 (339)
276 KOG4532 WD40-like repeat conta 98.9 6.7E-07 1.5E-11 62.9 17.3 163 27-204 85-289 (344)
277 PF08450 SGL: SMP-30/Gluconola 98.9 3.4E-06 7.3E-11 60.9 21.9 167 19-203 4-218 (246)
278 COG2706 3-carboxymuconate cycl 98.9 2.9E-06 6.4E-11 61.9 20.9 175 12-199 37-276 (346)
279 COG4946 Uncharacterized protei 98.9 1.2E-06 2.5E-11 66.4 19.3 161 22-201 274-481 (668)
280 PRK01029 tolB translocation pr 98.9 3.2E-07 7E-12 71.3 17.1 130 13-158 229-389 (428)
281 COG2706 3-carboxymuconate cycl 98.9 1.2E-06 2.6E-11 63.9 18.6 150 17-198 147-322 (346)
282 KOG2066 Vacuolar assembly/sort 98.9 8.9E-08 1.9E-12 76.2 13.8 138 15-207 40-197 (846)
283 PLN02919 haloacid dehalogenase 98.9 8.8E-07 1.9E-11 75.8 19.8 172 17-201 685-892 (1057)
284 KOG2315 Predicted translation 98.8 8.8E-08 1.9E-12 73.3 12.0 103 14-160 270-375 (566)
285 KOG2314 Translation initiation 98.8 1.9E-07 4E-12 71.7 13.0 98 83-198 446-574 (698)
286 PRK04043 tolB translocation pr 98.8 8.7E-07 1.9E-11 68.6 17.1 144 13-198 231-401 (419)
287 KOG3914 WD repeat protein WDR4 98.8 1.2E-08 2.6E-13 74.8 6.4 89 9-123 146-234 (390)
288 KOG4190 Uncharacterized conser 98.8 1E-08 2.2E-13 78.7 6.2 118 3-122 773-916 (1034)
289 KOG1334 WD40 repeat protein [G 98.8 4.4E-08 9.4E-13 73.8 9.1 191 8-200 226-469 (559)
290 KOG0882 Cyclophilin-related pe 98.8 3.4E-08 7.5E-13 73.8 7.0 173 5-205 44-239 (558)
291 PF11768 DUF3312: Protein of u 98.7 4.3E-07 9.2E-12 70.3 12.8 79 12-118 257-335 (545)
292 KOG1832 HIV-1 Vpr-binding prot 98.7 8E-09 1.7E-13 83.2 3.1 180 5-208 1092-1302(1516)
293 KOG2041 WD40 repeat protein [G 98.7 1.1E-07 2.4E-12 75.2 8.3 176 7-188 64-279 (1189)
294 PF04762 IKI3: IKI3 family; I 98.7 7.5E-06 1.6E-10 69.2 18.9 169 13-198 208-457 (928)
295 KOG1912 WD40 repeat protein [G 98.6 2.3E-06 5E-11 68.5 14.6 108 13-122 14-153 (1062)
296 KOG2314 Translation initiation 98.6 4.8E-07 1E-11 69.5 10.3 144 18-202 214-386 (698)
297 smart00320 WD40 WD40 repeats. 98.5 3.9E-07 8.5E-12 44.8 5.3 39 4-42 2-40 (40)
298 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00019 4.2E-09 54.1 21.5 154 36-198 27-224 (352)
299 TIGR03300 assembly_YfgL outer 98.5 0.00013 2.9E-09 56.1 20.7 94 25-120 104-216 (377)
300 KOG0309 Conserved WD40 repeat- 98.5 3.6E-07 7.7E-12 72.6 6.5 170 14-199 24-234 (1081)
301 PF11768 DUF3312: Protein of u 98.5 3.6E-06 7.7E-11 65.4 11.5 66 81-163 258-323 (545)
302 PLN02919 haloacid dehalogenase 98.5 0.0002 4.3E-09 61.9 22.9 181 18-201 571-837 (1057)
303 KOG2695 WD40 repeat protein [G 98.5 1.2E-06 2.6E-11 63.7 7.9 96 4-123 289-387 (425)
304 KOG1912 WD40 repeat protein [G 98.5 4.2E-05 9.2E-10 61.6 16.9 110 3-112 44-186 (1062)
305 PF08553 VID27: VID27 cytoplas 98.4 2.6E-05 5.6E-10 64.1 16.1 112 33-161 501-640 (794)
306 KOG3617 WD40 and TPR repeat-co 98.4 2.7E-06 5.8E-11 68.9 10.2 53 60-112 79-131 (1416)
307 KOG1920 IkappaB kinase complex 98.4 8.8E-06 1.9E-10 68.1 12.8 171 13-200 108-325 (1265)
308 TIGR03300 assembly_YfgL outer 98.4 0.00014 3.1E-09 55.9 18.8 95 25-122 64-173 (377)
309 KOG4714 Nucleoporin [Nuclear s 98.4 2.1E-06 4.5E-11 60.2 7.6 59 140-198 180-255 (319)
310 KOG4532 WD40-like repeat conta 98.4 3.1E-05 6.6E-10 54.8 13.1 126 60-200 92-236 (344)
311 PF07433 DUF1513: Protein of u 98.3 0.00045 9.8E-09 50.6 20.3 151 3-163 37-240 (305)
312 KOG1275 PAB-dependent poly(A) 98.3 1.2E-05 2.7E-10 65.5 11.7 130 16-163 179-336 (1118)
313 KOG4640 Anaphase-promoting com 98.3 6.2E-06 1.3E-10 64.5 9.2 80 14-120 20-100 (665)
314 smart00320 WD40 WD40 repeats. 98.3 3.9E-06 8.3E-11 41.0 5.5 38 73-110 3-40 (40)
315 KOG1645 RING-finger-containing 98.3 1.4E-05 3.1E-10 59.3 10.0 80 9-115 188-269 (463)
316 KOG2066 Vacuolar assembly/sort 98.3 6.9E-05 1.5E-09 60.5 14.0 111 10-124 54-199 (846)
317 COG0823 TolB Periplasmic compo 98.2 3.8E-05 8.2E-10 59.5 12.3 122 62-200 218-361 (425)
318 PRK02888 nitrous-oxide reducta 98.2 0.00051 1.1E-08 55.0 18.5 60 139-198 320-405 (635)
319 PF06433 Me-amine-dh_H: Methyl 98.2 0.00099 2.1E-08 49.5 20.6 97 18-117 39-171 (342)
320 KOG2114 Vacuolar assembly/sort 98.2 0.00075 1.6E-08 55.2 18.3 178 21-211 30-258 (933)
321 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0018 3.8E-08 50.4 19.8 110 83-210 217-327 (410)
322 COG5354 Uncharacterized protei 98.1 8.5E-05 1.8E-09 57.0 12.0 134 12-189 272-421 (561)
323 COG5170 CDC55 Serine/threonine 98.1 1.4E-05 3.1E-10 57.6 7.5 163 11-197 169-367 (460)
324 COG3490 Uncharacterized protei 98.1 0.00021 4.6E-09 51.3 12.4 133 60-205 138-318 (366)
325 KOG3621 WD40 repeat-containing 98.1 3.3E-05 7.2E-10 61.3 9.3 117 13-163 32-148 (726)
326 PF04053 Coatomer_WDAD: Coatom 98.1 0.0027 5.9E-08 49.7 20.5 132 9-163 27-168 (443)
327 PRK02888 nitrous-oxide reducta 98.1 0.00033 7.1E-09 56.1 14.7 141 17-163 237-398 (635)
328 KOG1645 RING-finger-containing 98.1 4.9E-05 1.1E-09 56.6 9.2 93 64-200 175-269 (463)
329 PRK11138 outer membrane biogen 98.0 0.0021 4.6E-08 49.8 18.1 168 26-204 160-360 (394)
330 PF06977 SdiA-regulated: SdiA- 98.0 0.0023 5E-08 46.0 18.8 157 9-200 16-203 (248)
331 KOG3621 WD40 repeat-containing 98.0 6E-05 1.3E-09 59.9 8.9 102 83-198 34-155 (726)
332 PF08596 Lgl_C: Lethal giant l 98.0 0.0017 3.6E-08 50.1 16.4 105 16-121 3-124 (395)
333 KOG0882 Cyclophilin-related pe 97.9 0.0001 2.2E-09 55.8 9.1 168 11-202 141-310 (558)
334 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0032 6.9E-08 44.9 17.2 97 26-122 23-133 (354)
335 PRK11138 outer membrane biogen 97.9 0.0024 5.2E-08 49.5 16.5 96 26-121 120-232 (394)
336 PF15492 Nbas_N: Neuroblastoma 97.9 0.00059 1.3E-08 48.8 11.7 110 13-122 146-269 (282)
337 KOG3617 WD40 and TPR repeat-co 97.9 2.1E-05 4.6E-10 64.0 4.9 101 83-200 16-134 (1416)
338 KOG1008 Uncharacterized conser 97.8 6.4E-06 1.4E-10 64.7 1.4 147 12-198 100-276 (783)
339 PF04053 Coatomer_WDAD: Coatom 97.8 0.0042 9E-08 48.7 16.4 163 16-198 70-263 (443)
340 PF13360 PQQ_2: PQQ-like domai 97.8 0.0053 1.1E-07 43.9 17.2 84 35-120 2-102 (238)
341 PF08450 SGL: SMP-30/Gluconola 97.8 0.0059 1.3E-07 44.1 18.4 126 14-156 85-242 (246)
342 PF03178 CPSF_A: CPSF A subuni 97.8 0.0048 1E-07 46.5 16.0 118 62-198 62-203 (321)
343 COG0823 TolB Periplasmic compo 97.7 0.00082 1.8E-08 52.3 11.1 128 19-187 242-389 (425)
344 KOG1832 HIV-1 Vpr-binding prot 97.7 7.9E-05 1.7E-09 61.2 5.7 116 74-204 1093-1221(1516)
345 KOG2079 Vacuolar assembly/sort 97.7 0.00033 7.1E-09 58.6 9.1 71 81-163 129-199 (1206)
346 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0038 8.2E-08 38.6 13.3 66 17-112 2-71 (111)
347 PF00780 CNH: CNH domain; Int 97.7 0.011 2.3E-07 43.5 17.1 35 178-213 237-271 (275)
348 PF12894 Apc4_WD40: Anaphase-p 97.7 0.00022 4.8E-09 36.9 5.2 30 14-43 11-40 (47)
349 PRK13616 lipoprotein LpqB; Pro 97.7 0.0025 5.3E-08 51.8 13.5 152 16-197 351-525 (591)
350 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.0095 2.1E-07 42.6 16.2 52 2-54 81-133 (354)
351 PF05096 Glu_cyclase_2: Glutam 97.7 0.011 2.3E-07 42.7 21.0 104 16-122 46-167 (264)
352 KOG2395 Protein involved in va 97.6 0.0015 3.2E-08 50.9 10.9 118 29-163 349-495 (644)
353 KOG4640 Anaphase-promoting com 97.6 0.00052 1.1E-08 54.3 8.3 69 82-166 20-89 (665)
354 PF04841 Vps16_N: Vps16, N-ter 97.6 0.013 2.8E-07 45.7 15.8 48 63-112 62-109 (410)
355 PF08553 VID27: VID27 cytoplas 97.6 0.015 3.3E-07 48.5 16.6 124 60-197 502-647 (794)
356 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00048 1E-08 35.6 5.2 34 82-116 11-44 (47)
357 PF14870 PSII_BNR: Photosynthe 97.5 0.025 5.5E-07 42.0 17.2 144 13-194 143-301 (302)
358 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.0009 2E-08 51.0 8.1 118 23-160 1-121 (353)
359 PF10168 Nup88: Nuclear pore c 97.4 0.016 3.6E-07 48.2 15.4 95 82-200 84-182 (717)
360 KOG2114 Vacuolar assembly/sort 97.4 0.042 9E-07 45.6 17.2 170 7-191 57-267 (933)
361 COG3386 Gluconolactonase [Carb 97.3 0.045 9.7E-07 40.9 17.0 169 19-204 29-249 (307)
362 PF05694 SBP56: 56kDa selenium 97.2 0.058 1.3E-06 41.8 19.8 163 25-200 86-345 (461)
363 COG3386 Gluconolactonase [Carb 97.2 0.026 5.7E-07 42.1 13.3 117 4-157 152-273 (307)
364 KOG4499 Ca2+-binding protein R 97.2 0.016 3.6E-07 40.8 11.1 100 18-149 161-263 (310)
365 PF12234 Rav1p_C: RAVE protein 97.2 0.021 4.5E-07 46.5 13.3 97 84-196 31-155 (631)
366 KOG1920 IkappaB kinase complex 97.2 0.0093 2E-07 51.0 11.4 65 83-163 69-133 (1265)
367 COG3391 Uncharacterized conser 97.2 0.073 1.6E-06 41.2 20.5 175 18-204 77-290 (381)
368 COG3204 Uncharacterized protei 97.1 0.063 1.4E-06 39.2 16.2 148 11-163 82-257 (316)
369 PF06977 SdiA-regulated: SdiA- 97.1 0.064 1.4E-06 38.7 14.4 107 77-198 16-148 (248)
370 KOG1008 Uncharacterized conser 97.0 0.00041 8.8E-09 55.0 2.4 105 78-195 98-223 (783)
371 PF02897 Peptidase_S9_N: Proly 97.0 0.033 7.1E-07 43.6 12.8 102 17-156 126-243 (414)
372 PRK13616 lipoprotein LpqB; Pro 97.0 0.015 3.3E-07 47.4 11.0 92 83-193 350-472 (591)
373 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.038 8.3E-07 34.2 13.1 88 85-191 2-108 (111)
374 PF10647 Gmad1: Lipoprotein Lp 96.9 0.087 1.9E-06 38.3 15.1 133 16-188 25-186 (253)
375 KOG4460 Nuclear pore complex, 96.9 0.061 1.3E-06 42.5 12.5 98 84-204 105-205 (741)
376 KOG2079 Vacuolar assembly/sort 96.8 0.11 2.3E-06 44.6 14.1 44 14-57 130-173 (1206)
377 PF05694 SBP56: 56kDa selenium 96.8 0.17 3.8E-06 39.3 14.7 141 17-157 183-391 (461)
378 PF15390 DUF4613: Domain of un 96.7 0.1 2.2E-06 41.9 12.7 105 83-197 57-186 (671)
379 PF08596 Lgl_C: Lethal giant l 96.6 0.17 3.6E-06 39.4 13.5 45 6-51 78-122 (395)
380 PF03178 CPSF_A: CPSF A subuni 96.5 0.23 4.9E-06 37.5 17.7 122 26-163 42-196 (321)
381 PF14870 PSII_BNR: Photosynthe 96.5 0.22 4.8E-06 37.1 12.9 96 81-193 143-257 (302)
382 PF10313 DUF2415: Uncharacteri 96.5 0.024 5.1E-07 28.5 5.5 32 83-114 1-35 (43)
383 PF12234 Rav1p_C: RAVE protein 96.5 0.12 2.6E-06 42.4 12.3 113 28-159 33-148 (631)
384 KOG3630 Nuclear pore complex, 96.4 0.04 8.6E-07 47.3 9.6 136 8-156 93-260 (1405)
385 PF06433 Me-amine-dh_H: Methyl 96.4 0.22 4.7E-06 37.5 12.3 62 60-122 267-330 (342)
386 COG3391 Uncharacterized conser 96.4 0.33 7.1E-06 37.7 15.2 127 60-203 94-245 (381)
387 KOG2444 WD40 repeat protein [G 96.4 0.01 2.2E-07 41.5 5.1 89 26-114 70-179 (238)
388 cd00216 PQQ_DH Dehydrogenases 96.3 0.44 9.6E-06 38.3 18.6 97 26-122 61-193 (488)
389 PF10313 DUF2415: Uncharacteri 96.3 0.037 8E-07 27.8 5.5 31 15-45 1-34 (43)
390 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 0.056 1.2E-06 42.0 9.0 48 7-54 300-347 (415)
391 COG3490 Uncharacterized protei 96.2 0.32 7E-06 35.6 14.2 84 61-159 90-181 (366)
392 KOG3630 Nuclear pore complex, 96.1 0.042 9E-07 47.2 8.0 110 60-185 122-261 (1405)
393 PF14583 Pectate_lyase22: Olig 96.0 0.53 1.1E-05 36.2 19.4 110 1-112 67-224 (386)
394 KOG2444 WD40 repeat protein [G 96.0 0.024 5.1E-07 39.7 5.2 94 93-199 69-179 (238)
395 PF10647 Gmad1: Lipoprotein Lp 95.9 0.37 8E-06 35.1 11.6 96 84-197 25-144 (253)
396 COG3204 Uncharacterized protei 95.9 0.25 5.5E-06 36.2 10.3 120 79-198 82-211 (316)
397 PF07250 Glyoxal_oxid_N: Glyox 95.8 0.21 4.5E-06 35.9 9.7 132 64-206 48-206 (243)
398 PF14761 HPS3_N: Hermansky-Pud 95.8 0.25 5.4E-06 34.6 9.6 50 95-160 29-80 (215)
399 PF14583 Pectate_lyase22: Olig 95.7 0.71 1.5E-05 35.6 19.3 97 2-98 18-140 (386)
400 PF10168 Nup88: Nuclear pore c 95.7 0.32 6.9E-06 40.9 11.6 94 15-115 85-182 (717)
401 COG5167 VID27 Protein involved 95.7 0.18 4E-06 39.9 9.4 123 25-163 478-627 (776)
402 PF08728 CRT10: CRT10; InterP 95.6 1.2 2.5E-05 37.3 14.8 111 84-197 102-246 (717)
403 KOG2280 Vacuolar assembly/sort 95.5 0.74 1.6E-05 38.3 12.6 33 168-200 217-249 (829)
404 PRK10115 protease 2; Provision 95.5 0.71 1.5E-05 38.9 13.0 75 16-114 128-209 (686)
405 PF08801 Nucleoporin_N: Nup133 95.4 0.83 1.8E-05 36.0 12.8 31 168-198 190-220 (422)
406 KOG2395 Protein involved in va 95.4 0.26 5.7E-06 39.1 9.5 110 1-112 363-500 (644)
407 PHA02713 hypothetical protein; 95.4 0.94 2E-05 37.2 13.2 32 178-209 512-545 (557)
408 COG3823 Glutamine cyclotransfe 95.4 0.6 1.3E-05 32.7 10.9 88 25-115 55-161 (262)
409 PF00930 DPPIV_N: Dipeptidyl p 95.2 1 2.2E-05 34.6 15.3 34 14-48 42-75 (353)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 1.2 2.5E-05 35.0 15.4 35 169-203 309-343 (415)
411 PF07569 Hira: TUP1-like enhan 95.1 0.19 4.1E-06 35.7 7.6 29 90-118 18-46 (219)
412 cd00216 PQQ_DH Dehydrogenases 95.1 1.4 3.1E-05 35.5 13.9 93 28-122 303-434 (488)
413 PF05096 Glu_cyclase_2: Glutam 95.1 0.9 2E-05 33.1 16.1 96 28-124 102-215 (264)
414 TIGR02604 Piru_Ver_Nterm putat 95.0 1.2 2.7E-05 34.4 14.1 19 15-33 14-32 (367)
415 KOG1900 Nuclear pore complex, 95.0 0.57 1.2E-05 41.3 11.0 130 60-198 97-273 (1311)
416 PF12657 TFIIIC_delta: Transcr 94.9 0.34 7.3E-06 33.0 8.2 31 83-113 86-122 (173)
417 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 2 4.2E-05 35.1 19.0 96 26-122 69-199 (527)
418 PF07995 GSDH: Glucose / Sorbo 94.6 1.5 3.2E-05 33.4 13.1 31 84-116 3-33 (331)
419 TIGR03074 PQQ_membr_DH membran 94.1 3.4 7.4E-05 35.3 20.3 96 26-122 194-354 (764)
420 PF07569 Hira: TUP1-like enhan 93.9 0.52 1.1E-05 33.5 7.6 84 22-118 18-101 (219)
421 PRK13684 Ycf48-like protein; P 93.9 2.2 4.7E-05 32.5 16.2 100 82-195 214-329 (334)
422 KOG2247 WD40 repeat-containing 93.6 0.02 4.4E-07 44.6 -0.0 122 17-155 37-175 (615)
423 COG4590 ABC-type uncharacteriz 93.4 0.39 8.4E-06 37.6 6.5 165 4-202 210-391 (733)
424 PF11715 Nup160: Nucleoporin N 93.4 1.5 3.2E-05 35.9 10.3 40 16-55 216-259 (547)
425 KOG1897 Damage-specific DNA bi 93.4 4.9 0.00011 34.9 13.7 119 60-197 805-942 (1096)
426 PF07995 GSDH: Glucose / Sorbo 93.3 2.9 6.2E-05 31.9 13.1 26 16-42 3-28 (331)
427 PF07676 PD40: WD40-like Beta 93.2 0.5 1.1E-05 23.0 5.3 25 10-34 4-28 (39)
428 PF12657 TFIIIC_delta: Transcr 92.9 1.9 4.2E-05 29.3 8.9 31 168-198 86-122 (173)
429 KOG3616 Selective LIM binding 92.7 2.9 6.2E-05 35.3 10.6 34 14-47 14-47 (1636)
430 TIGR02276 beta_rpt_yvtn 40-res 92.6 0.66 1.4E-05 22.8 5.7 31 92-122 1-32 (42)
431 KOG4441 Proteins containing BT 92.5 5.3 0.00012 33.0 12.6 92 25-117 332-457 (571)
432 PF14727 PHTB1_N: PTHB1 N-term 92.5 4.3 9.4E-05 32.0 18.8 52 60-112 153-204 (418)
433 PF10214 Rrn6: RNA polymerase 92.5 2.8 6E-05 36.0 10.9 89 15-117 146-237 (765)
434 PF13449 Phytase-like: Esteras 92.4 3.9 8.4E-05 31.1 14.8 74 84-159 86-166 (326)
435 KOG1916 Nuclear protein, conta 92.2 0.1 2.2E-06 44.0 2.1 55 60-114 151-215 (1283)
436 PF15390 DUF4613: Domain of un 92.1 5.8 0.00013 32.5 11.7 109 14-159 56-175 (671)
437 TIGR02276 beta_rpt_yvtn 40-res 91.7 0.7 1.5E-05 22.7 4.3 31 177-207 1-32 (42)
438 KOG4460 Nuclear pore complex, 91.7 6.1 0.00013 31.9 11.2 98 15-122 104-208 (741)
439 KOG1983 Tomosyn and related SN 91.7 6.5 0.00014 34.9 12.2 31 16-46 37-67 (993)
440 PF03022 MRJP: Major royal jel 91.6 4.5 9.6E-05 30.2 18.5 137 61-198 33-216 (287)
441 KOG2109 WD40 repeat protein [G 91.4 0.29 6.3E-06 39.9 3.8 50 62-111 295-345 (788)
442 PF02897 Peptidase_S9_N: Proly 91.3 6 0.00013 31.1 18.4 54 61-114 201-262 (414)
443 PF12768 Rax2: Cortical protei 90.9 4.4 9.5E-05 30.1 9.3 54 62-115 16-75 (281)
444 PF11715 Nup160: Nucleoporin N 90.8 0.83 1.8E-05 37.3 6.1 40 83-122 215-258 (547)
445 KOG1897 Damage-specific DNA bi 90.7 11 0.00023 33.0 17.3 96 17-112 777-898 (1096)
446 KOG4441 Proteins containing BT 90.7 5.7 0.00012 32.9 10.6 125 61-202 300-457 (571)
447 KOG1916 Nuclear protein, conta 90.5 0.44 9.6E-06 40.5 4.2 22 22-43 243-264 (1283)
448 TIGR03606 non_repeat_PQQ dehyd 90.2 8.2 0.00018 30.9 13.4 35 81-115 28-62 (454)
449 PF07676 PD40: WD40-like Beta 90.1 1.3 2.8E-05 21.4 5.1 30 80-109 6-38 (39)
450 TIGR03074 PQQ_membr_DH membran 89.9 12 0.00026 32.2 13.1 61 61-121 413-486 (764)
451 PHA03098 kelch-like protein; P 89.9 9.7 0.00021 31.1 13.2 23 178-200 487-514 (534)
452 KOG2377 Uncharacterized conser 89.3 9.6 0.00021 30.3 12.3 94 80-185 64-171 (657)
453 COG5308 NUP170 Nuclear pore co 89.1 9.3 0.0002 33.1 10.5 28 83-112 182-209 (1263)
454 PHA02713 hypothetical protein; 89.0 10 0.00022 31.4 10.8 23 25-47 351-378 (557)
455 PRK13684 Ycf48-like protein; P 88.1 10 0.00022 29.0 11.8 93 83-193 173-284 (334)
456 PLN00033 photosystem II stabil 87.8 12 0.00025 29.5 16.5 96 82-194 280-396 (398)
457 PF01436 NHL: NHL repeat; Int 87.6 1.7 3.6E-05 19.5 4.4 25 170-194 4-28 (28)
458 smart00564 PQQ beta-propeller 87.5 1.8 4E-05 19.8 4.1 24 96-119 8-31 (33)
459 KOG2377 Uncharacterized conser 86.9 5.9 0.00013 31.4 7.7 106 13-157 65-171 (657)
460 KOG1900 Nuclear pore complex, 86.6 16 0.00036 32.9 10.9 128 33-163 96-266 (1311)
461 PHA02790 Kelch-like protein; P 86.5 16 0.00034 29.6 14.5 24 93-116 362-388 (480)
462 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.4 6.8 0.00015 32.1 8.4 60 62-122 441-500 (527)
463 TIGR02608 delta_60_rpt delta-6 85.7 3.9 8.5E-05 21.9 5.4 48 142-191 3-50 (55)
464 TIGR02604 Piru_Ver_Nterm putat 84.9 16 0.00035 28.3 12.0 19 83-101 124-142 (367)
465 PF01731 Arylesterase: Arylest 84.4 6.5 0.00014 23.3 6.6 50 60-112 34-84 (86)
466 PHA03098 kelch-like protein; P 84.2 20 0.00044 29.3 10.3 23 25-47 342-369 (534)
467 COG5167 VID27 Protein involved 83.9 22 0.00047 29.0 11.6 118 61-197 489-632 (776)
468 PF08728 CRT10: CRT10; InterP 83.3 28 0.0006 29.7 11.4 104 94-198 49-196 (717)
469 PF03088 Str_synth: Strictosid 82.9 7.8 0.00017 23.2 8.6 40 102-157 35-74 (89)
470 TIGR03606 non_repeat_PQQ dehyd 82.8 23 0.0005 28.5 16.6 38 9-46 24-61 (454)
471 PF03088 Str_synth: Strictosid 82.4 8.3 0.00018 23.1 6.7 40 60-100 35-74 (89)
472 PF00780 CNH: CNH domain; Int 81.9 18 0.00038 26.5 11.4 53 93-163 6-58 (275)
473 PF02333 Phytase: Phytase; In 81.6 23 0.0005 27.7 17.5 157 24-198 66-291 (381)
474 TIGR03054 photo_alph_chp1 puta 81.5 12 0.00026 24.3 6.4 31 28-58 43-73 (135)
475 PF11635 Med16: Mediator compl 81.2 7.9 0.00017 33.3 7.0 38 83-120 260-297 (753)
476 PF14269 Arylsulfotran_2: Aryl 80.5 22 0.00048 26.7 12.7 37 17-53 146-182 (299)
477 PF14781 BBS2_N: Ciliary BBSom 80.4 13 0.00029 24.1 10.9 99 17-158 1-115 (136)
478 PF12341 DUF3639: Protein of u 79.9 4.3 9.3E-05 18.1 3.5 26 15-42 2-27 (27)
479 PF10214 Rrn6: RNA polymerase 78.9 40 0.00087 29.3 10.4 107 83-198 146-277 (765)
480 PF01011 PQQ: PQQ enzyme repea 78.7 5.9 0.00013 19.1 5.1 26 29-54 3-28 (38)
481 KOG4659 Uncharacterized conser 78.5 56 0.0012 30.2 11.9 187 1-192 380-686 (1899)
482 KOG1898 Splicing factor 3b, su 76.6 56 0.0012 29.2 13.2 132 60-197 910-1048(1205)
483 KOG2109 WD40 repeat protein [G 76.5 12 0.00026 31.2 6.3 40 3-42 304-344 (788)
484 KOG4499 Ca2+-binding protein R 75.5 28 0.00061 25.3 8.7 33 60-92 231-263 (310)
485 PRK13614 lipoprotein LpqB; Pro 74.4 50 0.0011 27.6 11.3 45 60-104 319-364 (573)
486 PF14761 HPS3_N: Hermansky-Pud 73.4 30 0.00065 24.6 15.2 28 73-101 51-78 (215)
487 TIGR03032 conserved hypothetic 73.3 36 0.00079 25.9 7.6 71 65-157 188-258 (335)
488 PF13449 Phytase-like: Esteras 73.2 39 0.00084 25.8 12.3 72 18-101 88-165 (326)
489 COG1506 DAP2 Dipeptidyl aminop 72.5 58 0.0013 27.5 11.8 26 10-35 55-80 (620)
490 COG4257 Vgb Streptogramin lyas 72.2 38 0.00083 25.3 14.8 167 16-198 63-263 (353)
491 PF01731 Arylesterase: Arylest 72.1 18 0.00039 21.5 5.4 30 15-44 54-84 (86)
492 TIGR02171 Fb_sc_TIGR02171 Fibr 71.4 38 0.00082 29.7 8.2 60 62-122 329-396 (912)
493 PHA02790 Kelch-like protein; P 71.1 54 0.0012 26.6 8.9 89 25-115 362-473 (480)
494 PF13570 PQQ_3: PQQ-like domai 70.6 11 0.00023 18.3 5.1 21 93-113 20-40 (40)
495 PLN00033 photosystem II stabil 70.0 53 0.0011 26.0 12.4 56 138-195 279-354 (398)
496 COG5308 NUP170 Nuclear pore co 69.6 10 0.00022 32.9 4.6 29 167-197 181-209 (1263)
497 PRK13615 lipoprotein LpqB; Pro 69.3 66 0.0014 26.8 11.0 27 86-112 337-363 (557)
498 COG5161 SFT1 Pre-mRNA cleavage 68.7 84 0.0018 27.8 13.5 27 6-33 901-927 (1319)
499 TIGR02171 Fb_sc_TIGR02171 Fibr 68.3 30 0.00065 30.3 7.1 39 7-45 341-386 (912)
500 KOG3616 Selective LIM binding 67.6 15 0.00033 31.3 5.1 35 82-116 14-48 (1636)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-38 Score=222.94 Aligned_cols=212 Identities=24% Similarity=0.385 Sum_probs=179.7
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE-EEEeCCCCcc---------------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ-CTVEGPRGGI--------------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~--------------------- 59 (216)
.+..+..+.++|...|.|++|+|||+.||+|+.||.|++||..+++.+ ..+.+|...+
T Consensus 145 ~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 145 DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 456678899999999999999999999999999999999999998655 4667776655
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-----cc--------
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-----LE-------- 126 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-----~~-------- 126 (216)
.||+++|||+..+.++..+.+|+.+|+|+.|--+ .++++|+.|++|++|+...|....++.... +.
T Consensus 225 kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 6999999999999999999999999999999754 489999999999999999887665555410 00
Q ss_pred ---cccc------------------------------------------------ceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 127 ---FSLN------------------------------------------------YWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 127 ---~~~~------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
+++. ......+|..-|+.+.|+||+++++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 0000 0001123788899999999999999
Q ss_pred EecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEEE
Q 043942 156 TGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFF 214 (216)
Q Consensus 156 ~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~ 214 (216)
+++.|..+ .+|-.+|+.++|+.|.++|++|+.|.++++|++++.+....+|.|.--+|.
T Consensus 384 SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 99999988 789999999999999999999999999999999999999999988877664
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=222.38 Aligned_cols=199 Identities=20% Similarity=0.269 Sum_probs=184.9
Q ss_pred CCCceeEEeeccccceEEEEEccC--CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDST 63 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~ 63 (216)
.+.+.+++|++|.+.|.++.|+|. +..+|||+.||++++|++.+...+..+.+|...+ .|.+
T Consensus 205 ~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t 284 (459)
T KOG0272|consen 205 PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDST 284 (459)
T ss_pred CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccc
Confidence 456788999999999999999996 5689999999999999999988888888877655 7899
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
-++||++++..+...++|...|.+++|+|||.+++||+.|..-+|||+++|+++..+.+ |..+|.
T Consensus 285 WRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g---------------H~k~I~ 349 (459)
T KOG0272|consen 285 WRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG---------------HIKEIL 349 (459)
T ss_pred hhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecc---------------ccccee
Confidence 99999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred EEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942 144 CLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
.+.|+|+|..+++|+.|+.+ .+|.+-|+.+.|+| .|.+|+|++.|++++||...+.+++..+..|
T Consensus 350 ~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH 429 (459)
T KOG0272|consen 350 SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH 429 (459)
T ss_pred eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC
Confidence 99999999999999999987 78999999999999 6889999999999999999999999999888
Q ss_pred ceeEEEe
Q 043942 209 SFKLFFL 215 (216)
Q Consensus 209 ~~~~~~~ 215 (216)
.-+++-+
T Consensus 430 e~kV~s~ 436 (459)
T KOG0272|consen 430 EGKVISL 436 (459)
T ss_pred ccceEEE
Confidence 8777643
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=224.00 Aligned_cols=178 Identities=23% Similarity=0.384 Sum_probs=167.9
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
+-.++..|.+|...|..++|+|+|++|+|++.|.+-++||++++..+...++|..++ .|..-+|
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 346788999999999999999999999999999999999999999888888888776 6777799
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
||+++++++..+.+|..+|.+++|+|+|..+|||+.|++++|||++..+.+..++. |.+-|+.++
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA---------------H~nlVS~Vk 394 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA---------------HSNLVSQVK 394 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc---------------ccchhhheE
Confidence 99999999999999999999999999999999999999999999999888888887 999999999
Q ss_pred eCC-CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 147 WPG-TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 147 ~~~-~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
|+| .|.+|++++.|+.+ .+|.+.|.+++.+|+++++++++.|+++++|.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 998 78899999999988 89999999999999999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.4e-36 Score=215.15 Aligned_cols=192 Identities=20% Similarity=0.379 Sum_probs=168.0
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
+...+.||.++|.|++|+|+|..|++|+.|.++|+||+.+..+..+.++|..-+ .+|+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 445678999999999999999999999999999999999999999999988755 8999999999
Q ss_pred CCccee-eeeeccCCCeeEEEEcC-----CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 70 DRGAYL-NMFSGHGSGLTCGDFTT-----DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 70 ~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
.+++++ ..+++|...|++++|.| ..++|++++.||.+++||+..+..+..+.. |..+|+
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg---------------HT~~VT 251 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG---------------HTASVT 251 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc---------------CccceE
Confidence 998766 66899999999999976 568999999999999999999998888877 667777
Q ss_pred EEEeCCCCcEEEEecccCeE------------------------------------------------------------
Q 043942 144 CLSWPGTSKYLVTGCVDGKV------------------------------------------------------------ 163 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i------------------------------------------------------------ 163 (216)
|++|.-+ .++++++.|+.|
T Consensus 252 CvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 252 CVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 7776543 356666666666
Q ss_pred ---------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942 164 ---------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF 210 (216)
Q Consensus 164 ---------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~ 210 (216)
.+|..-|..+.||||++++|+++.|+.|++|+-++++-+..+..|-.
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA 410 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence 68889999999999999999999999999999999998888877766
Q ss_pred eEE
Q 043942 211 KLF 213 (216)
Q Consensus 211 ~~~ 213 (216)
++|
T Consensus 411 ~VY 413 (480)
T KOG0271|consen 411 AVY 413 (480)
T ss_pred eeE
Confidence 665
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.1e-36 Score=229.22 Aligned_cols=180 Identities=25% Similarity=0.431 Sum_probs=171.4
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
...+++.+|.++|+.+.|+|+.++|+++|.|+++|+|.+.+...+-.+.+|..++ .|++.++|.
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 3456789999999999999999999999999999999999999999999988866 899999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
.....+++.+.+|.+.|.|++|+|+..++++||.|+++++||+.+|..+..|.+ |.++|.+++|+
T Consensus 522 ~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G---------------H~~~V~al~~S 586 (707)
T KOG0263|consen 522 TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG---------------HKGPVTALAFS 586 (707)
T ss_pred cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC---------------CCCceEEEEEc
Confidence 999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|+|++|++|+.||.| .+|.+.|.++.|+.+|..||+++.|++|++||+...
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999998 789999999999999999999999999999998753
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.6e-35 Score=200.38 Aligned_cols=194 Identities=19% Similarity=0.283 Sum_probs=175.9
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------------
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------------- 59 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------- 59 (216)
..++|++|.+.|+++.|++|+++|++++.||.+.|||..+.+....++.+..-+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 347899999999999999999999999999999999998887766665544322
Q ss_pred -------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEec
Q 043942 60 -------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGS 101 (216)
Q Consensus 60 -------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~ 101 (216)
.|.+..+||+++++.+..+.+|.+.|.+++++| +++.+++|+
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 788999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------Ee
Q 043942 102 DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DG 165 (216)
Q Consensus 102 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~ 165 (216)
.|+..++||++.+..++.|.. |...|++++|.|+|.-+++|++|+.. ..
T Consensus 207 cD~~aklWD~R~~~c~qtF~g---------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~ 271 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEG---------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS 271 (343)
T ss_pred cccceeeeeccCcceeEeecc---------------cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence 999999999999999999998 99999999999999999999999987 22
Q ss_pred eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEEE
Q 043942 166 HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFF 214 (216)
Q Consensus 166 ~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~ 214 (216)
-..+|++++||..|++|++|..|.++.+||.-.++....+..|..++-.
T Consensus 272 ~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 272 IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC 320 (343)
T ss_pred ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEE
Confidence 2468999999999999999999999999999999988888888776654
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-33 Score=193.88 Aligned_cols=187 Identities=18% Similarity=0.274 Sum_probs=165.4
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~ 65 (216)
+.|.+++.++||...|..+..++||++.++++.|+.+++||+.+++..+.+.+|...+ .|.+++
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 4588999999999999999999999999999999999999999999999999998766 899999
Q ss_pred EEECCCcceeeeeec-cCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 66 MWNADRGAYLNMFSG-HGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 66 i~d~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
+||+........... +.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+.. |...+
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g---------------h~~~v 195 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG---------------HSGYV 195 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc---------------ccccE
Confidence 999985544433332 2789999999997 78999999999999999999998888887 99999
Q ss_pred EEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
+.+.++|||..+++|+.||.+ ..|...|.+++|+|+.-.|+.+. +..|+|||+.+...+..
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEE 269 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhh
Confidence 999999999999999999988 57788999999999987776654 56699999998776543
No 8
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.3e-33 Score=201.79 Aligned_cols=191 Identities=20% Similarity=0.315 Sum_probs=175.3
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMW 67 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~ 67 (216)
+|.++.+|..|+++|.++.|+.+|.||++++.|+++.+||..+++..+.+..+..+. .|+.|+++
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVC 344 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEE
Confidence 577888999999999999999999999999999999999999999999998887762 78999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
.+...+++.++.+|.+.|.++.|+|.+.+|++++.|+++++|..........+.. |...|+.+.|
T Consensus 345 kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~---------------Hskei~t~~w 409 (524)
T KOG0273|consen 345 KVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQA---------------HSKEIYTIKW 409 (524)
T ss_pred EecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhh---------------hccceeeEee
Confidence 9999999999999999999999999999999999999999999998888888887 9999999999
Q ss_pred CCCC---------cEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 148 PGTS---------KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 148 ~~~~---------~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
+|+| ..+++++.|+.+ ..|..+|++++|+|+|+|+++|+.||.|.+|+.++++....
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 9864 468899999988 68999999999999999999999999999999999887665
Q ss_pred cCCc
Q 043942 205 APSY 208 (216)
Q Consensus 205 ~~~~ 208 (216)
....
T Consensus 490 ~~~~ 493 (524)
T KOG0273|consen 490 YQGT 493 (524)
T ss_pred ecCC
Confidence 4443
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-32 Score=185.73 Aligned_cols=190 Identities=22% Similarity=0.311 Sum_probs=167.2
Q ss_pred CceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCC-----CceEEEEeCCCCcc----------------cC
Q 043942 4 GDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSS-----RNLQCTVEGPRGGI----------------ED 61 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~-----~~~~~~~~~~~~~~----------------~~ 61 (216)
..+..++++|.+.|..++..+. .+.+++++.|..+.+|++.. |...+.+.+|...+ .|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 3455689999999999999986 47899999999999998764 56788888877655 89
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
+++++||+.+++..+.+.+|...|.+++|+||.+.+++|+.|++|++|++. +.+..++.... +.+-
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~-------------~~~W 150 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDS-------------HREW 150 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCC-------------CcCc
Confidence 999999999999999999999999999999999999999999999999988 55555554311 3788
Q ss_pred eEEEEeCCC--CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 142 VTCLSWPGT--SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 142 v~~~~~~~~--~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
|.++.|+|+ ..+|++++.|+.+ .+|.+.++.+++||||..+++|+.||.+.+||+++++.+..+
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 999999998 6899999999998 789999999999999999999999999999999999987765
Q ss_pred CC
Q 043942 206 PS 207 (216)
Q Consensus 206 ~~ 207 (216)
+.
T Consensus 231 ~a 232 (315)
T KOG0279|consen 231 EA 232 (315)
T ss_pred cC
Confidence 54
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=184.68 Aligned_cols=196 Identities=17% Similarity=0.245 Sum_probs=164.0
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
.++.++.+|...|.++.|..+|++++||+.||+++|||++...+.+.++.. .++ .+|.|++||
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEE
Confidence 478999999999999999999999999999999999999997666655543 222 899999999
Q ss_pred CCCcceeeeee-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 69 ADRGAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 69 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+.+..+...+. .....|.++...|||..++.+...|..++|++-+.+....+... .....|+..+..+.+
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~---------~k~~ah~~~il~C~l 223 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV---------HKFQAHNGHILRCLL 223 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh---------hheecccceEEEEEE
Confidence 99876655543 34467999999999999999999999999999875433333220 112238999999999
Q ss_pred CCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942 148 PGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF 210 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~ 210 (216)
||++++|++++.|..+ .+|..++.+++||.||+||++++.|+.+++|+++.++....-+.|..
T Consensus 224 SPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 224 SPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred CCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 9999999999999987 68888999999999999999999999999999999998776666543
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.5e-32 Score=187.22 Aligned_cols=177 Identities=23% Similarity=0.384 Sum_probs=163.6
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMW 67 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~ 67 (216)
+..+++.+|.+-+.|+.|-+|+ .|+|++.|.+..+||+++++.+..+.+|...+ .|+..++|
T Consensus 136 ~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklW 214 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLW 214 (343)
T ss_pred eeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeee
Confidence 3556799999999999999865 69999999999999999999999999998766 78999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
|++.+..++++.+|+..|++++|.|+|.-+++|++|++.++||++..+.+..+.... ...+|++++|
T Consensus 215 D~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~-------------~~~gitSv~F 281 (343)
T KOG0286|consen 215 DVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS-------------IICGITSVAF 281 (343)
T ss_pred eccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc-------------ccCCceeEEE
Confidence 999999999999999999999999999999999999999999999998888887533 5678999999
Q ss_pred CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 148 PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
+..|++|++|..|..+ .+|++.|+++..+|||.-++++|.|..+|||.
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999888876 79999999999999999999999999999994
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-32 Score=192.61 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=173.6
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-CceEEEEeCCCCcc----------------cCcEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~----------------~~~~v 64 (216)
++|++...|++|.+.|.+++|+..|++||+++.|-.+++||..+ .++++.+.+|...+ .|.+|
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTI 217 (406)
T ss_pred cchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccce
Confidence 67899999999999999999999999999999999999999986 34444444444332 89999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
+.|++.++.++.++.+|...|..++.+.||..+++++.|.++++|-+.+++....+.. |+.+|.+
T Consensus 218 k~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~---------------hEh~vEc 282 (406)
T KOG0295|consen 218 KAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE---------------HEHPVEC 282 (406)
T ss_pred eEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc---------------cccceEE
Confidence 9999999999999999999999999999999999999999999999999988888887 8899999
Q ss_pred EEeCCC---------------CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 145 LSWPGT---------------SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 145 ~~~~~~---------------~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
++|.|. +.++.+++.|+.| .+|.++|.+++|+|.|+||+++.+|+++++||
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 998652 2588999999988 79999999999999999999999999999999
Q ss_pred cccccceeecCCccee
Q 043942 196 IAEFRRATKAPSYSFK 211 (216)
Q Consensus 196 ~~~~~~~~~~~~~~~~ 211 (216)
+++.+++..++.|...
T Consensus 363 l~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 363 LKNLQCMKTLEAHEHF 378 (406)
T ss_pred eccceeeeccCCCcce
Confidence 9999998887766543
No 13
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.7e-31 Score=202.10 Aligned_cols=184 Identities=23% Similarity=0.419 Sum_probs=160.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------- 59 (216)
..+-..++|...+.+++++|||+++|||+.||.|+|||..++-+..++..|..++
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 3455667999999999999999999999999999999999999999999998876
Q ss_pred -----------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC
Q 043942 60 -----------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104 (216)
Q Consensus 60 -----------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~ 104 (216)
..-.|++|++++|+.+..+.+|.++|.+++|+|++..|++++.|+
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 334566777777777888889999999999999999999999999
Q ss_pred eEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------------
Q 043942 105 TLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------------- 163 (216)
Q Consensus 105 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------------- 163 (216)
+|++||+-... .+.++. ....+..++|+|+|+.+++++.||.|
T Consensus 501 TVRiW~if~s~~~vEtl~----------------i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~ 564 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLE----------------IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDL 564 (893)
T ss_pred eEEEEEeeccCceeeeEe----------------eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhc
Confidence 99999987553 445555 77889999999999999999999988
Q ss_pred --------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 164 --------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 164 --------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
.......+.+++++||+++++||..+.|.+|++.++-.+.+
T Consensus 565 ~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 565 SGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred cccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee
Confidence 23346789999999999999999999999999998765544
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=3.9e-30 Score=174.21 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=165.1
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDST 63 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~ 63 (216)
.+|.+.++++...+.|+.++..|+++.||+++ ...||+||+++++ ++.++++|...+ +||+
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 57999999998888999999999999999988 5689999999874 678888886654 8999
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
++|||++...+-+.++ |..+|+++..+|+...|++|..+|.|++||+.......++..+ ....|.
T Consensus 107 ~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe--------------~~~~i~ 171 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE--------------DDTSIQ 171 (311)
T ss_pred EEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC--------------CCccee
Confidence 9999999866655555 8899999999999999999999999999999987666555431 456789
Q ss_pred EEEeCCCCcEEEEecccCeE--------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc-cce
Q 043942 144 CLSWPGTSKYLVTGCVDGKV--------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF-RRA 202 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i--------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~-~~~ 202 (216)
++...|||++++.+...|.. +.|...+..+.+||++++|+++|.|.+++||+.++. +..
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle 251 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE 251 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence 99999999999999998876 789999999999999999999999999999999987 444
Q ss_pred eecCCc
Q 043942 203 TKAPSY 208 (216)
Q Consensus 203 ~~~~~~ 208 (216)
..+.++
T Consensus 252 ~~l~gh 257 (311)
T KOG0315|consen 252 LVLTGH 257 (311)
T ss_pred EEeecC
Confidence 455554
No 15
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=5.3e-30 Score=172.42 Aligned_cols=206 Identities=15% Similarity=0.250 Sum_probs=168.5
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
....+..|+++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...+ .|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 456788999999999999999999999999999999999999999999988766 7899999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC--ceeEEeeccc---ccccccce------------
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG--ENFHAIRRSS---LEFSLNYW------------ 132 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~--~~~~~~~~~~---~~~~~~~~------------ 132 (216)
++|+.++.+++|.+.|+.++|+.+...+++|+.|.++++||-++. ++++.+.... ........
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR 168 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence 999999999999999999999999999999999999999999865 3444443210 00000000
Q ss_pred --------EEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeC--CEEEEEEecCCCeEEEEeCC
Q 043942 133 --------MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHID--AIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 133 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~--~i~~~~~~~~~~~l~s~~~d 188 (216)
....-...+|++++|+++++..++++.|+.+ .+|.+ .=..++++.....+++|++|
T Consensus 169 tydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED 248 (307)
T KOG0316|consen 169 TYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED 248 (307)
T ss_pred EEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCC
Confidence 0011156789999999999999999999988 45543 33556777888899999999
Q ss_pred CcEEEEEcccccceeecCCccee
Q 043942 189 GTARVFEIAEFRRATKAPSYSFK 211 (216)
Q Consensus 189 ~~v~vw~~~~~~~~~~~~~~~~~ 211 (216)
|.|++||+.+...+.+++.++..
T Consensus 249 G~Vy~wdLvd~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSVVSTV 271 (307)
T ss_pred ceEEEEEeccceeeeeeccCCce
Confidence 99999999998887776655543
No 16
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.2e-31 Score=206.29 Aligned_cols=212 Identities=18% Similarity=0.280 Sum_probs=177.3
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
|.++..+..|.++|..+.|+|++.+|++|+.|-.|+||+..+.+++.++.+|..-+ .|.+|+||
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 34566788999999999999999999999999999999999999888888877644 89999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec--------ccc----cc--cccceE
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR--------SSL----EF--SLNYWM 133 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~--------~~~----~~--~~~~~~ 133 (216)
+.++++++..+++|...|.|..|+|....++++|-|.+|++||+..-+....-+. .+. .. +.-...
T Consensus 121 Nwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 121 NWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred eccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 9999999999999999999999999999999999999999999873322111111 011 01 111233
Q ss_pred EEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
+..+|...|+-++|+|.-..+++|++|+.+ .+|.++|+++-|+|..+++++.|+|++|+|||+.
T Consensus 201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred eecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 456799999999999999999999999998 7999999999999999999999999999999999
Q ss_pred cccceeecCCcceeEEEe
Q 043942 198 EFRRATKAPSYSFKLFFL 215 (216)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~ 215 (216)
..+.+..+....-++|+|
T Consensus 281 kRt~v~tfrrendRFW~l 298 (1202)
T KOG0292|consen 281 KRTSVQTFRRENDRFWIL 298 (1202)
T ss_pred cccceeeeeccCCeEEEE
Confidence 888777665444444443
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=4e-31 Score=187.28 Aligned_cols=190 Identities=20% Similarity=0.326 Sum_probs=173.7
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
++.+.+++|.+.|.|+++.|-.++|+||+.|++++|||+.++++..++.+|-..+ .|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 3456788999999999999999999999999999999999999999999877654 899999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.++++||+++...+..+.+ |..+|..+.+.
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G---------------H~~~V~~V~~~ 286 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG---------------HTNPVASVMCQ 286 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC---------------CCCcceeEEee
Confidence 999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942 149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF 210 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~ 210 (216)
|....+++|+.|+.+ ..|...|.+++.+|....+++++.| .++-|++..++.+..+..+..
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~ 361 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA 361 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc
Confidence 988899999999998 6788899999999999999998876 689999998887766555543
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=3.7e-32 Score=195.04 Aligned_cols=176 Identities=22% Similarity=0.357 Sum_probs=160.1
Q ss_pred EEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 8 SEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 8 ~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
+.+++|. ..|++++|+|+...|++++.||+|+|||....+....+.+|.-.+ .|+.|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 3444554 899999999998999999999999999999888877777776544 78899999999
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG- 149 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 149 (216)
++.++.++..|...|..+.|+|++++|+|++.|..++++|+++.+.+..+.. |...++++.|+|
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~---------------Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG---------------HKKDVTSLTWHPL 317 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc---------------chhhheeeccccc
Confidence 9999999999999999999999999999999999999999998888888887 999999999999
Q ss_pred CCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 150 TSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 150 ~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
...+|.+|+.||.+ .+|...|++++|+|-|..|++|+.|.++++|.-..
T Consensus 318 ~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 318 NESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 56788899999988 68999999999999999999999999999997543
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.5e-30 Score=197.30 Aligned_cols=188 Identities=24% Similarity=0.406 Sum_probs=164.5
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEEC-CCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDT-SSRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
..+.+.+|...|.+++|+|+++++++++.|+++++||+ ..+..++++.+|...+ .|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 56677899999999999999999999999999999999 5568999999998876 899999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeec--CeEE
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYD--GVTC 144 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~v~~ 144 (216)
+++++++..+.+|...|++++|+++++++++++.|+.|++||+.++.. ...+.. +.. +++.
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~---------------~~~~~~~~~ 339 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG---------------AENSAPVTS 339 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC---------------CCCCCceeE
Confidence 999999999999999999999999999999999999999999999984 444443 222 6999
Q ss_pred EEeCCCCcEEEEecccCeE--------------EeeeC---CEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 145 LSWPGTSKYLVTGCVDGKV--------------DGHID---AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i--------------~~~~~---~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
+.|+|++.++++++.|+.+ .+|.. .+.+...++.++++++++.|+.|++|++.++.....+..
T Consensus 340 ~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred EEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence 9999999999999999887 34444 344445577899999999999999999998877777776
Q ss_pred c
Q 043942 208 Y 208 (216)
Q Consensus 208 ~ 208 (216)
|
T Consensus 420 h 420 (456)
T KOG0266|consen 420 H 420 (456)
T ss_pred C
Confidence 6
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=2e-30 Score=199.19 Aligned_cols=192 Identities=22% Similarity=0.363 Sum_probs=169.3
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-------------------------------eEEEEeCC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-------------------------------LQCTVEGP 55 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-------------------------------~~~~~~~~ 55 (216)
..++..-...++|..|++|+..||.|-.|..|++|.+...+ ...++.+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 34444445679999999999999999999999999987421 12334556
Q ss_pred CCcc----------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE
Q 043942 56 RGGI----------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA 119 (216)
Q Consensus 56 ~~~~----------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~ 119 (216)
.+++ +|+++++|.+.+...+-.+++|..+|+.+.|+|.|-++||++.|++-++|.....++...
T Consensus 451 ~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred CCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh
Confidence 6655 899999999999999999999999999999999999999999999999999999888888
Q ss_pred eecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEE
Q 043942 120 IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSV 185 (216)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~ 185 (216)
+.+ |...|.|+.|+|+..|+++|+.|.++ .+|.++|++++|||+|++|++|
T Consensus 531 fag---------------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 531 FAG---------------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred hcc---------------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence 877 99999999999999999999999988 7899999999999999999999
Q ss_pred eCCCcEEEEEcccccceeecCCcceeEE
Q 043942 186 SVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 186 ~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
+.||.|++||+.+++.+..+..|...++
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~ 623 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIY 623 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCcee
Confidence 9999999999999998887777755444
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3.4e-31 Score=193.55 Aligned_cols=188 Identities=21% Similarity=0.378 Sum_probs=166.9
Q ss_pred ceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCC-CceEEEEeCCCCcc----------------cCcEEEE
Q 043942 5 DWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
+.+.++.+|...|.++.|.| .+.+|++++.|+.|+||++.. +.+++++.+|..++ .|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 46778999999999999999 889999999999999999987 89999999999877 8999999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++++.. |-..|..+
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~---------------hLg~i~~i 348 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR---------------HLGAILDI 348 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh---------------hhhheeee
Confidence 9999999999887 45678999999988 8899999999999999999998888876 77788888
Q ss_pred EeCCCCcEEEEecccCeE------------------------------------------------------------Ee
Q 043942 146 SWPGTSKYLVTGCVDGKV------------------------------------------------------------DG 165 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i------------------------------------------------------------~~ 165 (216)
.|-++|+.++++++|+.+ .+
T Consensus 349 ~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 349 TFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred EEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence 888888888888888776 34
Q ss_pred ee--CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942 166 HI--DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 166 ~~--~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
|. +.-..+.|||||.+|++|+.||.+.+||.++.+....++.|
T Consensus 429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 43 45678899999999999999999999999998887777766
No 22
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-29 Score=173.27 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=157.5
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------cCc
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------EDS 62 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~~~ 62 (216)
+|+.+-+++||.+.|+|+..+.+.++++||+.|.++++||.++|+.+.+++.+...- ..+
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~ 120 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTC 120 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcce
Confidence 689999999999999999999999999999999999999999999998887654422 677
Q ss_pred EEEEEECC-------CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE-EeecccccccccceEE
Q 043942 63 TVWMWNAD-------RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH-AIRRSSLEFSLNYWMI 134 (216)
Q Consensus 63 ~v~i~d~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~ 134 (216)
.|.++|++ ...+...+..+...++.+-|.|-+++|++|..||.|..||.++|+... ....
T Consensus 121 ~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~------------ 188 (327)
T KOG0643|consen 121 FVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE------------ 188 (327)
T ss_pred EEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh------------
Confidence 88999988 345677888888999999999999999999999999999999986543 3343
Q ss_pred EeeeecCeEEEEeCCCCcEEEEecccCeE---------------------------------------------------
Q 043942 135 CTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------------------------------------------- 163 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------------------------------------------- 163 (216)
|...|+.+.++|+..++++++.|..-
T Consensus 189 ---h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~G 265 (327)
T KOG0643|consen 189 ---HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAG 265 (327)
T ss_pred ---hccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeeccccc
Confidence 77788888888888888888877643
Q ss_pred ------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 164 ------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 164 ------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.+|-++|.+++|+|+|+..++|++||.||+..+..
T Consensus 266 KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 266 KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred chhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 79999999999999999999999999999986654
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.1e-29 Score=192.70 Aligned_cols=188 Identities=27% Similarity=0.489 Sum_probs=164.0
Q ss_pred EEeecc-ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 8 SEILGH-KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 8 ~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
..+..| ...|.++.|+++|+++++++.|+.+++|+....+ ....+.+|...+ .|.++++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 334343 7789999999999999999999999999997777 666666666555 899999999
Q ss_pred C-CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 69 A-DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 69 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+ ..+..++++++|...|++++|+|+++.+++|+.|++|++||+++++....+.. |.+.|++++|
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~---------------hs~~is~~~f 296 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG---------------HSDGISGLAF 296 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec---------------cCCceEEEEE
Confidence 9 45588899999999999999999999999999999999999999999999988 9999999999
Q ss_pred CCCCcEEEEecccCeE--------E--------eeeC--CEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 148 PGTSKYLVTGCVDGKV--------D--------GHID--AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i--------~--------~~~~--~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
++++++|++++.|+.+ . .+.. +++.+.|+|++.++++++.|+.+++||+...+.......+.
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccC
Confidence 9999999999999988 1 1122 58999999999999999999999999999887776555544
Q ss_pred e
Q 043942 210 F 210 (216)
Q Consensus 210 ~ 210 (216)
.
T Consensus 377 ~ 377 (456)
T KOG0266|consen 377 N 377 (456)
T ss_pred C
Confidence 3
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.1e-28 Score=182.45 Aligned_cols=201 Identities=20% Similarity=0.256 Sum_probs=161.0
Q ss_pred CCCceeEEee---ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cC
Q 043942 2 NQGDWASEIL---GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------ED 61 (216)
Q Consensus 2 ~~g~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~ 61 (216)
.+|+.+..|. +|++.|++++|+||++.|+|++.|.+++|||..+.++++++....... .+
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 4688888998 899999999999999999999999999999999999999987665511 78
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe-----------eccc------
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI-----------RRSS------ 124 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~-----------~~~~------ 124 (216)
|++.+++.....++..+.+|...|+++..+|++++|.+|+.||.|.-||..++..-... ....
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 99999999988899999999999999999999999999999999999999876432111 1000
Q ss_pred ------------------------ccccccceEEEe--------------------------------------------
Q 043942 125 ------------------------LEFSLNYWMICT-------------------------------------------- 136 (216)
Q Consensus 125 ------------------------~~~~~~~~~~~~-------------------------------------------- 136 (216)
+..++.......
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 000010000000
Q ss_pred -------------------------eeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEe
Q 043942 137 -------------------------SLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVS 176 (216)
Q Consensus 137 -------------------------~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~ 176 (216)
.|..++++++++||+.+|+++...+.+ .-|...|.+++|+
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence 066778888888888888888777766 3488899999999
Q ss_pred cCCCeEEEEeCCCcEEEEEcccccce
Q 043942 177 AIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 177 ~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
|+.+++|+|+.|-+|.||+++.+...
T Consensus 540 P~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CCceEEEeccccceEEEEEccChhhh
Confidence 99999999999999999999876544
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8.4e-31 Score=188.12 Aligned_cols=181 Identities=18% Similarity=0.360 Sum_probs=157.4
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Cc----------------ccCcEEEEEECCC
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GG----------------IEDSTVWMWNADR 71 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~----------------~~~~~v~i~d~~~ 71 (216)
.+++|.++|.++.|+++|.++++|+.+|.|++|+.+-... +.++.+. .. ..|++|+|||...
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 3568999999999999999999999999999999764322 1121111 11 1899999999999
Q ss_pred cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (216)
.+....+.+|.-.|.+++|+|.-.++++++.|..|++||.+++.++.++.. |...|..+.|+|++
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~---------------HKntVl~~~f~~n~ 276 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG---------------HKNTVLAVKFNPNG 276 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh---------------ccceEEEEEEcCCC
Confidence 988889999999999999999999999999999999999999999999987 99999999999999
Q ss_pred cEEEEecccCeE--------------EeeeCCEEEEEEecC-CCeEEEEeCCCcEEEEEcccccceeec
Q 043942 152 KYLVTGCVDGKV--------------DGHIDAIQSLSVSAI-RESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 152 ~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~-~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
++|++++.|..+ ++|...++++.|+|- ..+|.+++.||.|..|.+...+++..+
T Consensus 277 N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 277 NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC
Confidence 999999999987 789999999999995 567889999999999999855555443
No 26
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-28 Score=169.07 Aligned_cols=206 Identities=18% Similarity=0.193 Sum_probs=165.0
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDST 63 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~ 63 (216)
.+-++.+.++.-...|+++.|+++|.++++++.|..+++||..+++..+++..+.-++ .|.+
T Consensus 2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3445667777777899999999999999999999999999999999999887765443 6889
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc---cccccccceEEEe----
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS---SLEFSLNYWMICT---- 136 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~---- 136 (216)
|+..++.+.+.++.+.||...|++++.+|-+..+++++.|++|++||++..++...+... ...+++++.....
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999999999999999976655444321 1223333322221
Q ss_pred -----------------------eeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeC---CEEEEEEe
Q 043942 137 -----------------------SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHID---AIQSLSVS 176 (216)
Q Consensus 137 -----------------------~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~---~i~~~~~~ 176 (216)
....+.+.+.|+|+|++++.+...+.+ ..+.. --.+.+|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 135568899999999999988888755 22221 12578999
Q ss_pred cCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 177 AIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 177 ~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
||++++++|+.||+|.+|++++++.......
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999999999887765443
No 27
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=179.87 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=170.6
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
|++|++..++.||...|..+++|+-..|+++++.|+.|+.||++..+.++.+.+|-.++ .|.++
T Consensus 180 latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 180 LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence 57899999999999999999999999999999999999999999999888888877765 89999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
++||+++...+..+.+|..+|..+.+.|....+++|+.|++|++||++.|+....+.. |...+++
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~---------------hkksvra 324 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH---------------HKKSVRA 324 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec---------------ccceeeE
Confidence 9999999999999999999999999999889999999999999999999999888887 8999999
Q ss_pred EEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 145 LSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
++.+|....+++++.|..- .+|..-|..++...|+ ++++|++.|.+.+||.+++...+
T Consensus 325 l~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 325 LCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred EecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccc
Confidence 9999999999999988654 6778889999887765 67889999999999999865543
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.9e-29 Score=174.81 Aligned_cols=190 Identities=19% Similarity=0.273 Sum_probs=171.0
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEEC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNA 69 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~ 69 (216)
...+++|.+.|..+.|.+|++.+++++.|.+++.||.++++..+..+.|...+ .|+++++||+
T Consensus 83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~ 162 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI 162 (338)
T ss_pred eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence 34678999999999999999999999999999999999999999999888765 8999999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
++...+++++ ...+++++.|..++..+.+|+-|+.|++||++.+.....+.+ |.+.|+.+..+|
T Consensus 163 R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG---------------h~DtIt~lsls~ 226 (338)
T KOG0265|consen 163 RKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG---------------HADTITGLSLSR 226 (338)
T ss_pred cccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeec---------------ccCceeeEEecc
Confidence 9998888876 457799999999999999999999999999999999999987 999999999999
Q ss_pred CCcEEEEecccCeE------------------Eee----eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 150 TSKYLVTGCVDGKV------------------DGH----IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 150 ~~~~l~~~~~~~~i------------------~~~----~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
+|.++.+-+.|..+ .+| +.....++|+|+++++.+++.|+.+++||......+.++|.
T Consensus 227 ~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpG 306 (338)
T KOG0265|consen 227 YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPG 306 (338)
T ss_pred CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCC
Confidence 99999999999887 111 23457889999999999999999999999998888889988
Q ss_pred cceeE
Q 043942 208 YSFKL 212 (216)
Q Consensus 208 ~~~~~ 212 (216)
|...+
T Consensus 307 h~gsv 311 (338)
T KOG0265|consen 307 HYGSV 311 (338)
T ss_pred cceeE
Confidence 76543
No 29
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=4.3e-28 Score=187.51 Aligned_cols=180 Identities=20% Similarity=0.324 Sum_probs=146.6
Q ss_pred EeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCc-------eEEEEeCCCCcc-----------------cCcE
Q 043942 9 EILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRN-------LQCTVEGPRGGI-----------------EDST 63 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~~~-----------------~~~~ 63 (216)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++. .+..+.+|...+ .|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 88999999999999999997652 345555554433 7999
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC-e
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG-V 142 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 142 (216)
|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. |... .
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---------------H~~~~~ 214 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---------------HASAKS 214 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec---------------CCCCcc
Confidence 99999999999999999999999999999999999999999999999999988877765 5443 4
Q ss_pred EEEEeCCCCcEEEEec----ccCeE---------------E-eeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccccc
Q 043942 143 TCLSWPGTSKYLVTGC----VDGKV---------------D-GHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFRR 201 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~----~~~~i---------------~-~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~~ 201 (216)
..+.|.+++..+++++ .|+.+ . .....+....|++++++|++++ .|+.|++||+.+++.
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 5678888887777654 35666 0 1123455567899999999887 499999999998775
Q ss_pred ee
Q 043942 202 AT 203 (216)
Q Consensus 202 ~~ 203 (216)
..
T Consensus 295 ~~ 296 (493)
T PTZ00421 295 TF 296 (493)
T ss_pred EE
Confidence 44
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.9e-28 Score=165.74 Aligned_cols=179 Identities=26% Similarity=0.429 Sum_probs=152.0
Q ss_pred CceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc---eEEEE-eCCCCcc----------------cCc
Q 043942 4 GDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN---LQCTV-EGPRGGI----------------EDS 62 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~---~~~~~-~~~~~~~----------------~~~ 62 (216)
-..++.+++|.+.++.++|+|- |..||||+.|+.|++|+...+. +...+ .+|...+ .|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3467889999999999999997 8899999999999999998532 22222 1222222 799
Q ss_pred EEEEEECCC--cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc---eeEEeecccccccccceEEEee
Q 043942 63 TVWMWNADR--GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE---NFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 63 ~v~i~d~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
++.||.-.. .+++.++++|.+.|.|++|+++|++||++++|+.|.+|.+..+. ....+..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~--------------- 148 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE--------------- 148 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc---------------
Confidence 999998764 46788999999999999999999999999999999999998553 3445554
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
|...|..+.|+|...+|++++.|..| .+|...|.+++|++.|..|++++.|++++||...
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99999999999999999999999998 6788899999999999999999999999999854
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2e-28 Score=173.72 Aligned_cols=212 Identities=30% Similarity=0.498 Sum_probs=170.3
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
+.+|+...++.+|++.|.++.|+.+|.+||||+.+|.|+||+..++.....+......+ .||.+
T Consensus 93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence 35788899999999999999999999999999999999999999998877775322222 89999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec------ccccccccceEEEe--
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR------SSLEFSLNYWMICT-- 136 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~~~~-- 136 (216)
.+|.+......+.+.+|+.++++-.|.|+|+.++++..||+|++||+.+++++..+.. ..+........+..
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 9999999888899999999999999999999999999999999999999999887772 11111111111111
Q ss_pred ----------------------------eeecCeEEEEe---CCCCcEEEEecccCeE-------------EeeeCCEEE
Q 043942 137 ----------------------------SLYDGVTCLSW---PGTSKYLVTGCVDGKV-------------DGHIDAIQS 172 (216)
Q Consensus 137 ----------------------------~~~~~v~~~~~---~~~~~~l~~~~~~~~i-------------~~~~~~i~~ 172 (216)
.+...+.++.+ +..=.+.|+|+-||.+ -.|..+|+.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence 12223334443 4444567888889988 578889999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942 173 LSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 173 ~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
+.|-+ ..+|++++.+|.|+.||.++++.......|...++
T Consensus 333 l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 333 LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred EEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 99988 78999999999999999999999888777765554
No 32
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1e-29 Score=185.85 Aligned_cols=193 Identities=17% Similarity=0.303 Sum_probs=158.9
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
++++++++.+|..+|.+++|+++|..|.+++.|+.+++||.++|+++..+....... .|+.|+.
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence 578999999999999999999999999999999999999999999888775432211 8999999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec------cccccccc----------
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR------SSLEFSLN---------- 130 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~------~~~~~~~~---------- 130 (216)
||+++++.++.+..|-+.|..+.|-++++.++++++|+.+++|+.+.+-.+..+.. +.+...++
T Consensus 327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 327 WDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred EeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence 99999999999999999999999999999999999999999999987754432221 11111110
Q ss_pred -ceEE--------------Eeee--ecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCC
Q 043942 131 -YWMI--------------CTSL--YDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR 179 (216)
Q Consensus 131 -~~~~--------------~~~~--~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~ 179 (216)
.... +.+| .+.-..+.|||||++|++|+.||.+ .+|.+++..+.|+|..
T Consensus 407 N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 0111 1112 3446678999999999999999998 7899999999999965
Q ss_pred -CeEEEEeCCCcEEEEE
Q 043942 180 -ESLVSVSVDGTARVFE 195 (216)
Q Consensus 180 -~~l~s~~~d~~v~vw~ 195 (216)
..+|+|+.||.|++|+
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 5789999999999996
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.6e-28 Score=187.16 Aligned_cols=125 Identities=26% Similarity=0.478 Sum_probs=116.0
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.-|.+-||+.+....+.+.++|...+++++++|||++++||+.||+|++||..++-+..+|.. |.
T Consensus 328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte---------------Ht 392 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE---------------HT 392 (893)
T ss_pred ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc---------------CC
Confidence 345777788777777778889999999999999999999999999999999999999999998 99
Q ss_pred cCeEEEEeCCCCcEEEEecccCeE--------------------------------------------------------
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDGKV-------------------------------------------------------- 163 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~~i-------------------------------------------------------- 163 (216)
..|+.+.|+..|+.+++++-||++
T Consensus 393 s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 393 SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 999999999999999999999988
Q ss_pred --EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 164 --DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 164 --~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
.+|+++|.+++|+|++..|+++|.|++||+||+-..
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 799999999999999999999999999999998765
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.5e-27 Score=173.83 Aligned_cols=184 Identities=26% Similarity=0.513 Sum_probs=161.2
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
++++++|.++|.+++|+|++++|++++.|+.+++|++.+++....+..+...+ .++.+++||++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 45678999999999999999999999999999999999887766666655433 69999999999
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
+++.+..+..|...+.++.|+|+++++++++.|+.+.+||+++++....+.. +...+.++.|+|+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~ 146 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---------------HTDWVNSVAFSPD 146 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc---------------CCCcEEEEEEcCc
Confidence 8888888888998999999999988999988899999999998887777765 7889999999999
Q ss_pred CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
+.++++++.++.+ ..|...+.+++|+|+++.+++++.|+.+++||+..++.....
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch
Confidence 9999988878876 456678999999999999999999999999999876665554
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=170.79 Aligned_cols=180 Identities=28% Similarity=0.473 Sum_probs=158.1
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
++-.+.+|++.|+.+.|+|+|.+||||+.|..|.+|+.. ..+-...+.+|.+++ .|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 344567999999999999999999999999999999954 456666777888776 899999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
.++|+.++.+++|..-|+++.-+..| ..+.+++.|+++++||+++...++++. ..-+++++.|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----------------~kyqltAv~f 182 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----------------NKYQLTAVGF 182 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----------------cceeEEEEEe
Confidence 99999999999999999998854444 456788999999999999988888886 5678999999
Q ss_pred CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 148 PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
..++..+.+|+-|+.+ .+|..+|+.+..+|+|.++.+-+.|.++++||++...+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 9999999999999777 78999999999999999999999999999999987543
No 36
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=190.80 Aligned_cols=182 Identities=25% Similarity=0.381 Sum_probs=145.9
Q ss_pred eEEee-ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE------------------------------------
Q 043942 7 ASEIL-GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ------------------------------------ 49 (216)
Q Consensus 7 ~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~------------------------------------ 49 (216)
.+.+. +|.+.|+++.||+||+|||+|+.|+.|+||.+...+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 44556 89999999999999999999999999999987661110
Q ss_pred ------------------------EEEeCCCCcc---------------cCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942 50 ------------------------CTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDF 90 (216)
Q Consensus 50 ------------------------~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 90 (216)
+.+.+|...+ .|.+|++|++....++..|. |...|+|++|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 0000111111 89999999999999999998 9999999999
Q ss_pred cC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------
Q 043942 91 TT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------ 163 (216)
Q Consensus 91 ~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------ 163 (216)
+| |.+++++|+-|+++++|++...+.+.-.. ...-|++++|.|+|++.+.|+.+|..
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D----------------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND----------------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehh----------------hhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 99 88999999999999999999776655444 55889999999999999999999987
Q ss_pred -----------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEcccccceeecC
Q 043942 164 -----------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 164 -----------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
..|. .|+++.|.|... .++..+.|..|||+|.++...+.++.
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred CCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 1233 799999998543 46666789999999997665554443
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=7.5e-30 Score=180.57 Aligned_cols=176 Identities=19% Similarity=0.396 Sum_probs=156.0
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWN 68 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d 68 (216)
+.++.+.|.||.+.|.|+.|. .+.+++|+.|.+|++||.+++++++++-.|...+ .|.++.+||
T Consensus 226 ~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 226 SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWD 303 (499)
T ss_pred cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEe
Confidence 345677888999999999995 4699999999999999999999999998888876 899999999
Q ss_pred CCCcc---eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 69 ADRGA---YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 69 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
+.... ..+.+.+|...|+.+.|+ .+++++++.|++|++|++.++..+..+.+ |...|-|+
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g---------------HkRGIACl 366 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG---------------HKRGIACL 366 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc---------------ccccceeh
Confidence 98654 335678999999999996 56999999999999999999999999987 88889888
Q ss_pred EeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 146 SWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.+ .++++++|+.|..| ++|+.-|.++.| |.+.+++|+.||+|++||+.....
T Consensus 367 QY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 367 QY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred hc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence 75 57999999999998 899999999999 778899999999999999987553
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=187.39 Aligned_cols=193 Identities=22% Similarity=0.332 Sum_probs=169.5
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc-----------------cCcEEEEE
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI-----------------EDSTVWMW 67 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~-----------------~~~~v~i~ 67 (216)
.+.||.+.|.++....+|.+|+||+.|.++++|.++++ .+++...+|...+ .|+++++|
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 67899999999997677889999999999999988543 2334445555544 89999999
Q ss_pred ECCCcce-----ee----eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 68 NADRGAY-----LN----MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 68 d~~~~~~-----~~----~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
++...+. .. +...|...|++++++|+.++++|||.|++.++|++.+......+.+ |
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG---------------H 504 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG---------------H 504 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC---------------C
Confidence 9986221 11 2357999999999999999999999999999999998888888887 9
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
...+.++.|+|..+.+++++.|.++ .+|...|..+.|-.+++.|++++.||.+++|++++.++...
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t 584 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT 584 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh
Confidence 9999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEeC
Q 043942 205 APSYSFKLFFLI 216 (216)
Q Consensus 205 ~~~~~~~~~~~~ 216 (216)
+..|.-+++.|+
T Consensus 585 lD~H~DrvWaL~ 596 (775)
T KOG0319|consen 585 LDAHNDRVWALS 596 (775)
T ss_pred hhhccceeEEEe
Confidence 999998888763
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.4e-28 Score=172.50 Aligned_cols=177 Identities=20% Similarity=0.324 Sum_probs=164.2
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|..-+ .|.++++|-
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEE
Confidence 4566778999999999999999999999999999999999999999999888754 788999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCC---------------CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTD---------------GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 133 (216)
..++++...++.|..+|.+++|.|. +.++.+++.|++|++||+.++..+.++..
T Consensus 264 ~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g----------- 332 (406)
T KOG0295|consen 264 VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG----------- 332 (406)
T ss_pred eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec-----------
Confidence 9999999999999999999999874 25899999999999999999999999987
Q ss_pred EEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
|...|..++|+|.|+||+++.+|+.+ ..|..-+++++|+.+..++++|+-|.++++|.-
T Consensus 333 ----hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 333 ----HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ----ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999998 678889999999999999999999999999963
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.8e-26 Score=168.23 Aligned_cols=192 Identities=23% Similarity=0.398 Sum_probs=166.7
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
+++....+..|...+..+.|+|+++++++++.|+.|++||+.+++....+..+...+ .++.+.+
T Consensus 40 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 119 (289)
T cd00200 40 TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119 (289)
T ss_pred CCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEE
Confidence 455667788899999999999999999999999999999999887777776655433 4999999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
||+++++....+..|...+.+++|+|++.++++++.|+.+++||+++++....+.. +...+.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---------------~~~~i~~~~ 184 (289)
T cd00200 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG---------------HTGEVNSVA 184 (289)
T ss_pred EECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec---------------CccccceEE
Confidence 99999888888888999999999999999999988899999999998888777765 778999999
Q ss_pred eCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 147 WPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
|+|+++.+++++.++.+ ..|...+.+++|+|++.++++++.|+.+++|++.+++....++.+.
T Consensus 185 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 261 (289)
T cd00200 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261 (289)
T ss_pred ECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC
Confidence 99999999999888887 3677799999999999899988889999999999877666655443
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=180.07 Aligned_cols=197 Identities=17% Similarity=0.299 Sum_probs=149.9
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
..+++..|.+.|.++.++|...+++++-..|.|.||+.++...++.++....++ .|..|++|+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 345667799999999999999999999999999999999999999998776665 8999999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEeeccc-----ccc----------------
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSS-----LEF---------------- 127 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~-----~~~---------------- 127 (216)
+|++.+..+.+|...|.+++.+|...+++|+|+|-.|++||.+.+ .+.+++.+.. +.+
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 999999999999999999999999999999999999999999865 4455665500 000
Q ss_pred -------cccceEEEeeeecCeEEEEeCC--CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEE
Q 043942 128 -------SLNYWMICTSLYDGVTCLSWPG--TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVS 184 (216)
Q Consensus 128 -------~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s 184 (216)
++.......+|...|+++.+-+ |..++++|++|..+ .+|...|..+.|+|.-..+++
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 0000111223555555555533 22455555555554 677777888888887777788
Q ss_pred EeCCCcEEEEEcccccce
Q 043942 185 VSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 185 ~~~d~~v~vw~~~~~~~~ 202 (216)
||+||++|||+..+.+..
T Consensus 245 gsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ecCCccEEEecCcceehh
Confidence 888888888877665543
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=5.3e-27 Score=173.57 Aligned_cols=190 Identities=23% Similarity=0.341 Sum_probs=158.9
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc-------------------
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI------------------- 59 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~------------------- 59 (216)
|++......+..|..+++-..|+|.|.|+|+|...|+|||||....+.+. +++.-.+++
T Consensus 46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr 125 (603)
T KOG0318|consen 46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR 125 (603)
T ss_pred CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence 34556667788999999999999999999999999999999987643322 222222211
Q ss_pred ------------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942 60 ------------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI 97 (216)
Q Consensus 60 ------------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 97 (216)
.|++|.+|+-...+...+++.|..-|.|+.|+|||.++
T Consensus 126 erfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 126 ERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred cceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE
Confidence 66667777665555556677899999999999999999
Q ss_pred EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------
Q 043942 98 CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------- 163 (216)
Q Consensus 98 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------- 163 (216)
++++.||++.+||-.+++.+..+.... .|.+.|.++.|+||++.+++++.|..+
T Consensus 206 at~gsDgki~iyDGktge~vg~l~~~~------------aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEKVGELEDSD------------AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred EEecCCccEEEEcCCCccEEEEecCCC------------CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEe
Confidence 999999999999999999999987411 299999999999999999999999876
Q ss_pred -------------------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 164 -------------------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 164 -------------------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.+|...|+++..+|++++|++|+.||.|.-|+..++.
T Consensus 274 ~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 274 PMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred ecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 7899999999999999999999999999999998866
Q ss_pred ce
Q 043942 201 RA 202 (216)
Q Consensus 201 ~~ 202 (216)
.-
T Consensus 354 ~~ 355 (603)
T KOG0318|consen 354 SD 355 (603)
T ss_pred cc
Confidence 44
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.7e-28 Score=184.33 Aligned_cols=117 Identities=23% Similarity=0.384 Sum_probs=106.8
Q ss_pred CCCCceeEEeec-cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cC
Q 043942 1 INQGDWASEILG-HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------ED 61 (216)
Q Consensus 1 l~~g~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~ 61 (216)
|.+|++++.+++ |.+||.-++|+|.+.+|++|+.|+.++|||+..+.+...+.++.+.+ .|
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 567889999998 99999999999999999999999999999999999999999988766 89
Q ss_pred cEEEEEECCCcce-eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee
Q 043942 62 STVWMWNADRGAY-LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF 117 (216)
Q Consensus 62 ~~v~i~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~ 117 (216)
+.+++||+++... +..+..|.+.|++++|.+|+..++++++|..+.+||+.+.+..
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 9999999996554 7888999999999999999999999999999999999755443
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=6.5e-27 Score=192.62 Aligned_cols=179 Identities=21% Similarity=0.310 Sum_probs=151.3
Q ss_pred CCCceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----------c------ccCcEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----------G------IEDSTV 64 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----------~------~~~~~v 64 (216)
++++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||+.++..+..+..+.. + ..|+.|
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I 642 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKV 642 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeE
Confidence 46778888999999999999997 789999999999999999999887776654321 0 078999
Q ss_pred EEEECCCcc-eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC------ceeEEeecccccccccceEEEee
Q 043942 65 WMWNADRGA-YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG------ENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 65 ~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
++||+++.. ++..+.+|...|.++.|. ++..+++++.|+.|++||++.+ +.+..+..
T Consensus 643 ~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--------------- 706 (793)
T PLN00181 643 YYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--------------- 706 (793)
T ss_pred EEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC---------------
Confidence 999998765 567788999999999997 6789999999999999999753 33444544
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeEE---------------------------eeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKVD---------------------------GHIDAIQSLSVSAIRESLVSVSVDGT 190 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i~---------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~ 190 (216)
|...+..++|+|++.+|++|+.|+.+. .+...|.+++|+|++.+|++++.||.
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 888899999999999999999999870 12245899999999999999999999
Q ss_pred EEEEEc
Q 043942 191 ARVFEI 196 (216)
Q Consensus 191 v~vw~~ 196 (216)
|+||++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999996
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=8.6e-29 Score=167.99 Aligned_cols=180 Identities=25% Similarity=0.392 Sum_probs=155.6
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCcc----------------cCcEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~----------------~~~~v~ 65 (216)
+|..+.++. |+.-|..++|+.|.++|+||+.+..+||||++..+ +..++.+|..++ .+++|+
T Consensus 90 tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 90 TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 455566664 88899999999999999999999999999998753 445666666655 899999
Q ss_pred EEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 66 MWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
+||.+++..++++. .+..|+++.++++|++|.++ ..+.|.+||..+...+..++ -...|.+.
T Consensus 169 LWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k----------------~P~nV~SA 230 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK----------------MPCNVESA 230 (334)
T ss_pred EEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc----------------Cccccccc
Confidence 99999999999988 56789999999999887665 45679999999998888887 46678899
Q ss_pred EeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 146 SWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.++|+..++++|++|..+ .+|.++|.++.|+|+|...++||+||+|++|.+..++.
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999999999999999887 67889999999999999999999999999999876553
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=158.13 Aligned_cols=171 Identities=23% Similarity=0.372 Sum_probs=143.8
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEEeCCCCcc----------------cCcEEEEEECCCc-
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTVEGPRGGI----------------EDSTVWMWNADRG- 72 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~----------------~~~~v~i~d~~~~- 72 (216)
+|+..|.+++|+|.|++||++|.|.++.||.-..+ +++..+++|...+ .|..|-||.+..+
T Consensus 59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 69999999999999999999999999999998765 6788999999877 8999999998743
Q ss_pred --ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-C--ceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 73 --AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-G--ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 73 --~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
.+...++.|...|..+.|+|...+|++++.|.+|++|+-.. . ...+++.. |...|.+++|
T Consensus 139 Efec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g---------------~~~TVW~~~F 203 (312)
T KOG0645|consen 139 EFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDG---------------HENTVWSLAF 203 (312)
T ss_pred cEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecC---------------ccceEEEEEe
Confidence 56778999999999999999999999999999999998773 2 45666665 6667777777
Q ss_pred CCCCcEEEEecccCeE---------------------------------------------------------EeeeCCE
Q 043942 148 PGTSKYLVTGCVDGKV---------------------------------------------------------DGHIDAI 170 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i---------------------------------------------------------~~~~~~i 170 (216)
+|.|..|++++.|+.+ ..|...|
T Consensus 204 ~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV 283 (312)
T KOG0645|consen 204 DNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV 283 (312)
T ss_pred cCCCceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc
Confidence 7777777777777766 5677788
Q ss_pred EEEEEecC-CCeEEEEeCCCcEEEEEcc
Q 043942 171 QSLSVSAI-RESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 171 ~~~~~~~~-~~~l~s~~~d~~v~vw~~~ 197 (216)
.++.|+|. .+.|++++.||.|++|.+.
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEec
Confidence 88888884 5678888888888888764
No 47
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=179.85 Aligned_cols=185 Identities=25% Similarity=0.444 Sum_probs=166.7
Q ss_pred CCceeEE-eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEE
Q 043942 3 QGDWASE-ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMW 67 (216)
Q Consensus 3 ~g~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~ 67 (216)
++..+.. +.+|.+.|+++++..-+.+|++|+.|.++++||..++++...+.+|...+ .|.+|++|
T Consensus 237 ~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 237 NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVW 316 (537)
T ss_pred cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEE
Confidence 4566666 99999999999999877899999999999999999999999999988866 79999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
++++++.+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++.+..+.. |...|+++.+
T Consensus 317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g---------------H~~~V~sl~~ 379 (537)
T KOG0274|consen 317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG---------------HTGRVYSLIV 379 (537)
T ss_pred eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC---------------CcceEEEEEe
Confidence 999999999999999999999997 88999999999999999999999999998 9999999988
Q ss_pred CCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 148 PGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
.+. ..+++|+.|+.| .+|..-+..+.+ .+++|++++.|++|++||..++++...+..
T Consensus 380 ~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 380 DSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred cCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 776 899999999977 455555644444 778999999999999999999998887766
No 48
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=7.2e-26 Score=176.41 Aligned_cols=180 Identities=16% Similarity=0.186 Sum_probs=138.2
Q ss_pred ceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc--------eEEEEeCCCCcc----------------
Q 043942 5 DWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN--------LQCTVEGPRGGI---------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~--------~~~~~~~~~~~~---------------- 59 (216)
.++..+.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.++. .+..+.+|...+
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 456788999999999999996 7899999999999999997642 223445544432
Q ss_pred -cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 60 -EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 60 -~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
.|++|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.. |
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g---------------H 208 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI---------------H 208 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec---------------c
Confidence 68999999999998777776 667899999999999999999999999999999998887765 6
Q ss_pred ecCeEE-----EEeCCCCcEEEEecccC----eE--------------EeeeC---CEEEEEEecCCCeEEEEeCCCcEE
Q 043942 139 YDGVTC-----LSWPGTSKYLVTGCVDG----KV--------------DGHID---AIQSLSVSAIRESLVSVSVDGTAR 192 (216)
Q Consensus 139 ~~~v~~-----~~~~~~~~~l~~~~~~~----~i--------------~~~~~---~i~~~~~~~~~~~l~s~~~d~~v~ 192 (216)
.+.+.. ..|++++.++++++.++ .+ ..+.. .+......+++.++++|+.|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 554332 34568889988877664 34 11111 122222234588899999999999
Q ss_pred EEEccccc
Q 043942 193 VFEIAEFR 200 (216)
Q Consensus 193 vw~~~~~~ 200 (216)
+|++..+.
T Consensus 289 ~~e~~~~~ 296 (568)
T PTZ00420 289 YYQHSLGS 296 (568)
T ss_pred EEEccCCc
Confidence 99997653
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=6.1e-26 Score=186.90 Aligned_cols=172 Identities=20% Similarity=0.422 Sum_probs=143.5
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----c----eEEEEeCCC-----------Cc-c----cCcEEE
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----N----LQCTVEGPR-----------GG-I----EDSTVW 65 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~----~~~~~~~~~-----------~~-~----~~~~v~ 65 (216)
+..|.+.|.+++|+|+|++||+|+.|+.|++||.... . ....+..+. .. + .|++|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 3458999999999999999999999999999997542 1 111111111 00 1 699999
Q ss_pred EEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 66 MWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
+||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|+.|++||++++..+..+. ....+.+
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~----------------~~~~v~~ 622 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK----------------TKANICC 622 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe----------------cCCCeEE
Confidence 999999999999999999999999997 78999999999999999999988877765 3357889
Q ss_pred EEeC-CCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 145 LSWP-GTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 145 ~~~~-~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+.|+ +++.++++|+.|+.+ .+|...|..+.|. ++.+|++++.|++|++||+..
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 9994 579999999999987 4577899999996 788999999999999999974
No 50
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.8e-28 Score=170.79 Aligned_cols=198 Identities=16% Similarity=0.280 Sum_probs=156.8
Q ss_pred eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cC---------
Q 043942 6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------ED--------- 61 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~--------- 61 (216)
.+..|.+|.+.|.|++=+|.. ..+++|+.||.|++||+...++..+++.|.+.+ .|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKID 137 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeecc
Confidence 456788999999999999976 789999999999999999999999998888644 33
Q ss_pred -----------------------------cEEEEEECCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeC
Q 043942 62 -----------------------------STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNP 111 (216)
Q Consensus 62 -----------------------------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~ 111 (216)
-.|.|||.+...++..+.--...|.++.|+|.. ..|++|..|+.|.+||+
T Consensus 138 ~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~ 217 (433)
T KOG0268|consen 138 GPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDL 217 (433)
T ss_pred CCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEec
Confidence 345566666666666666556678999999954 56777889999999999
Q ss_pred CCCceeEEee----cccccccccceEEE-----------------------eeeecCeEEEEeCCCCcEEEEecccCeE-
Q 043942 112 KGGENFHAIR----RSSLEFSLNYWMIC-----------------------TSLYDGVTCLSWPGTSKYLVTGCVDGKV- 163 (216)
Q Consensus 112 ~~~~~~~~~~----~~~~~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~l~~~~~~~~i- 163 (216)
+++.+++.+. .+.+.++++.+... .+|...|.++.|+|.|+.+++|+.|..|
T Consensus 218 R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 218 RQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred ccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEE
Confidence 9987765443 34444444333222 2277789999999999999999999998
Q ss_pred --------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 164 --------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 164 --------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
....+.|.++.||.|.+|+++||.|+.|++|.....+.+.
T Consensus 298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 2224679999999999999999999999999987665543
No 51
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=6.8e-28 Score=169.55 Aligned_cols=183 Identities=22% Similarity=0.367 Sum_probs=159.8
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--------CCcc----------------cCcEEEEE
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--------RGGI----------------EDSTVWMW 67 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------~~~~----------------~~~~v~i~ 67 (216)
+.+..+.|..|+|||++|++|+.||.|.+||..+|+..+.++-. ..++ .||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 34567889999999999999999999999999999766554322 1111 89999999
Q ss_pred ECCCcceeeeee-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 68 NADRGAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 68 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
.+++|.+++.+. +|...|+|+.|+.|+..+++++.|.++++--+++|+.+.++.+ |...|+...
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG---------------HsSyvn~a~ 355 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG---------------HSSYVNEAT 355 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC---------------ccccccceE
Confidence 999999999987 8999999999999999999999999999999999999999998 999999999
Q ss_pred eCCCCcEEEEecccCeE-------------------------------------------------------------Ee
Q 043942 147 WPGTSKYLVTGCVDGKV-------------------------------------------------------------DG 165 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i-------------------------------------------------------------~~ 165 (216)
|.++|.++++++.||.+ ..
T Consensus 356 ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR 435 (508)
T KOG0275|consen 356 FTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR 435 (508)
T ss_pred EcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCc
Confidence 99999999999999988 11
Q ss_pred eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 166 HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 166 ~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
..+...+++.+|.|.++.+.++|+.++.|.+.+++....++.+.
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE 479 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE 479 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc
Confidence 23456677899999999999999999999999988777666543
No 52
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.6e-27 Score=175.66 Aligned_cols=184 Identities=22% Similarity=0.314 Sum_probs=153.4
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC-CCCcc--------------cCcEEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-PRGGI--------------EDSTVWMW 67 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~~--------------~~~~v~i~ 67 (216)
+++.......+.+.|+++.|+++|++||+|..+|.|.|||..+.+.+..+.. |...+ .++.|..+
T Consensus 206 s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~ 285 (484)
T KOG0305|consen 206 SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNH 285 (484)
T ss_pred CCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEE
Confidence 3443444444578999999999999999999999999999999998888888 65544 89999999
Q ss_pred ECCCcceeee-eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 68 NADRGAYLNM-FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 68 d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
|++..+.... +.+|...|..++|++|++++|+|+.|+.+.+||.....+...+.. |...|.+++
T Consensus 286 dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~---------------H~aAVKA~a 350 (484)
T KOG0305|consen 286 DVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE---------------HTAAVKALA 350 (484)
T ss_pred EEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec---------------cceeeeEee
Confidence 9998766555 889999999999999999999999999999999987777777776 667777777
Q ss_pred eCC-CCcEEEEecc--cCeE---------------------------------------------------------Eee
Q 043942 147 WPG-TSKYLVTGCV--DGKV---------------------------------------------------------DGH 166 (216)
Q Consensus 147 ~~~-~~~~l~~~~~--~~~i---------------------------------------------------------~~~ 166 (216)
|+| ....||+|+. |+.+ .+|
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence 776 4455665533 4444 789
Q ss_pred eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 167 IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 167 ~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
...|..++++|||..+++++.|.++++|++-+..+
T Consensus 431 ~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 431 TSRVLYLALSPDGETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred cceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence 99999999999999999999999999999987433
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.8e-27 Score=160.82 Aligned_cols=177 Identities=18% Similarity=0.260 Sum_probs=154.1
Q ss_pred ceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEE
Q 043942 5 DWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWM 66 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i 66 (216)
.+++.++.|+.+|.++.|++ +++.++++|.|++|++|+...++.+.++.+|...+ .|+++++
T Consensus 95 ~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 95 KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 57888999999999999999 56778899999999999999999999999988876 8999999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
||++..-....+..|...+.++.|+. +.+.++||+.|+.|+.||+++-+ ++.++.. |.-.|+.
T Consensus 175 wdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g---------------h~~AVRk 239 (311)
T KOG0277|consen 175 WDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG---------------HGLAVRK 239 (311)
T ss_pred EEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC---------------CceEEEE
Confidence 99986544445889999999999998 67789999999999999999754 4555554 9999999
Q ss_pred EEeCCCC-cEEEEecccCeE---------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEc
Q 043942 145 LSWPGTS-KYLVTGCVDGKV---------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 145 ~~~~~~~-~~l~~~~~~~~i---------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~ 196 (216)
++|+|.. ..|++++.|-++ ..|..-+..+.|++ ++.++|+++.|..++||+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999954 678899998877 56788899999998 5678999999999999984
No 54
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=160.22 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=149.0
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW 67 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~ 67 (216)
++..+.+|.++|++++.+ +.++|+|+.|.+|+|||+.....+..+-.|.+.+ .||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 355677899999999995 7899999999999999999998888877776655 89999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc----cccccc--eEEEee----
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL----EFSLNY--WMICTS---- 137 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~----~~~~~~--~~~~~~---- 137 (216)
+......+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-+|+.....+.... .+.+++ +.+...
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~ 192 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKID 192 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEE
Confidence 9999999999999999999999999999999999999999999998876555443211 111111 111100
Q ss_pred --------------eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEE--ecCCCeEEEEeC
Q 043942 138 --------------LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV--SAIRESLVSVSV 187 (216)
Q Consensus 138 --------------~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~--~~~~~~l~s~~~ 187 (216)
.+..+.++.|- ++..+++|.+|+.+ .+|..+|-++.+ .|++.+|+|+|.
T Consensus 193 i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 193 IYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred EEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 11123333332 45667777777766 789999999884 467889999999
Q ss_pred CCcEEEEEcccc
Q 043942 188 DGTARVFEIAEF 199 (216)
Q Consensus 188 d~~v~vw~~~~~ 199 (216)
||.|+|||++..
T Consensus 272 DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGFIKVWDIDME 283 (362)
T ss_pred CceEEEEEcccc
Confidence 999999999865
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.9e-27 Score=158.42 Aligned_cols=175 Identities=22% Similarity=0.366 Sum_probs=149.7
Q ss_pred cccceEEEEEccC-CCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCcEEEEEECCCcc
Q 043942 13 HKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDSTVWMWNADRGA 73 (216)
Q Consensus 13 h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~~ 73 (216)
-.+.+..++|++. .+.+++++.||++++||+... .++..++.|...+ .|++|++|+...++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 3567899999995 468889999999999996543 5666666666655 89999999999999
Q ss_pred eeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-CC
Q 043942 74 YLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TS 151 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 151 (216)
.+.++.+|...|...+|+| .++.+++++.|+++++||++.......++. |..++.++.|+. +.
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a---------------h~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA---------------HNSEILCCDWSKYNH 203 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe---------------ccceeEeecccccCC
Confidence 9999999999999999999 678999999999999999997554445766 889999999987 66
Q ss_pred cEEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccce
Q 043942 152 KYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 152 ~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+.+++|+.|+.+ .+|.-.|..++|||.. ..|++++.|-+++|||...+...
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 789999999988 6888999999999975 68899999999999999865443
No 56
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=1.1e-25 Score=164.62 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=163.4
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~ 78 (216)
..|++++|+.+|..||+|+.||.+++|+.. +..+.++..|..++ -|+++.+||..++...+.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 579999999999999999999999999975 45555566666555 7999999999999999999
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
.-|..+-..+.|-. ...+++++.|+.|+|+.+....++.++.. |..+|.++.|+|.+.+|++++
T Consensus 315 ~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~G---------------H~g~V~alk~n~tg~LLaS~S 378 (524)
T KOG0273|consen 315 EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIG---------------HHGEVNALKWNPTGSLLASCS 378 (524)
T ss_pred eeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeec---------------ccCceEEEEECCCCceEEEec
Confidence 98988777899975 45788999999999999998899999987 999999999999999999999
Q ss_pred ccCeE--------------EeeeCCEEEEEEecCC---------CeEEEEeCCCcEEEEEcccccceeecCCcceeEEEe
Q 043942 159 VDGKV--------------DGHIDAIQSLSVSAIR---------ESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215 (216)
Q Consensus 159 ~~~~i--------------~~~~~~i~~~~~~~~~---------~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~ 215 (216)
.|+++ .+|...|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.-++|.+
T Consensus 379 dD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv 458 (524)
T KOG0273|consen 379 DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV 458 (524)
T ss_pred CCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE
Confidence 99998 7889999999999965 478999999999999999999999988888877754
No 57
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=6.9e-26 Score=161.69 Aligned_cols=195 Identities=19% Similarity=0.315 Sum_probs=163.2
Q ss_pred CCceeEEeeccccceEEEEEccCC---CEEEEEcCCCcEEEEECCCCceE----EEEeCCCCcc----------------
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDG---QLLASGGFHGLVQNRDTSSRNLQ----CTVEGPRGGI---------------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~---------------- 59 (216)
.|+.+.++.+|.++|.+++|-... ..|++++.|.++++|..+.++.. +...+|...+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 588899999999999988886533 36999999999999998876432 2334666554
Q ss_pred cCcEEEEEECC-------------------------CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 043942 60 EDSTVWMWNAD-------------------------RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG 114 (216)
Q Consensus 60 ~~~~v~i~d~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~ 114 (216)
.|..+.+|+.. ++.++..+.+|..+|.++.|++ ...+.+++.|++|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 89999999932 1235667889999999999998 678999999999999999999
Q ss_pred ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEec
Q 043942 115 ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSA 177 (216)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~ 177 (216)
.....+. .....+++..+|...+|++|+.|..+ .+|.+.|.++.|+|
T Consensus 292 ~~~~~~~----------------~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp 355 (423)
T KOG0313|consen 292 GLKSTLT----------------TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP 355 (423)
T ss_pred cceeeee----------------cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCC
Confidence 9888887 56788999999999999999999877 78999999999999
Q ss_pred CCC-eEEEEeCCCcEEEEEccccc-ceeecCCcceeEEE
Q 043942 178 IRE-SLVSVSVDGTARVFEIAEFR-RATKAPSYSFKLFF 214 (216)
Q Consensus 178 ~~~-~l~s~~~d~~v~vw~~~~~~-~~~~~~~~~~~~~~ 214 (216)
... +|++++.|+++++||+++.+ ++..+..|.-++|.
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLS 394 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEE
Confidence 764 67899999999999999977 77777777766654
No 58
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.8e-26 Score=177.14 Aligned_cols=181 Identities=25% Similarity=0.302 Sum_probs=158.2
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-----CceE--------EEEeCCCCcc----------
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-----RNLQ--------CTVEGPRGGI---------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-----~~~~--------~~~~~~~~~~---------- 59 (216)
+...+-+.++|.+.|++++.+||++.++|||.|.+|++||..- +... ++++......
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 3455667789999999999999999999999999999999742 1111 1222211111
Q ss_pred -----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942 60 -----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 60 -----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 134 (216)
-|++|++|-+.+-+....+.||.-+|.|+..+||++.++||+.|+.|++|-++=|.+-..+..
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA------------ 590 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA------------ 590 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc------------
Confidence 799999999999999999999999999999999999999999999999999999998888877
Q ss_pred EeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 135 CTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
|.+.|.++.|-|+...+++++.|+.+ .+|...|++++.+|+|.+++++|.|.+|++|.-..
T Consensus 591 ---HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 591 ---HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ---ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999999999999 78999999999999999999999999999998644
No 59
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=159.94 Aligned_cols=160 Identities=21% Similarity=0.345 Sum_probs=141.7
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCe
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGL 85 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v 85 (216)
-+.+|..|+++|++++.+|+.++++||+.|....+|+ +.++.....+.+|...|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~--------------------------~~~ge~~~eltgHKDSV 109 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWD--------------------------ISTGEFAGELTGHKDSV 109 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEE--------------------------ccCCcceeEecCCCCce
Confidence 4568899999999999999999999999666555555 45555666788999999
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
+++.|+.+|.+||||..+|.|++|+..++.....+.. ....+.=+.|+|.+.+|+.|+.||.+
T Consensus 110 t~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~---------------e~~dieWl~WHp~a~illAG~~DGsvWm 174 (399)
T KOG0296|consen 110 TCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---------------EVEDIEWLKWHPRAHILLAGSTDGSVWM 174 (399)
T ss_pred EEEEEccCceEEEecCCCccEEEEEcccCceEEEeec---------------ccCceEEEEecccccEEEeecCCCcEEE
Confidence 9999999999999999999999999999988877764 56778889999999999999999998
Q ss_pred ------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 164 ------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
.+|..++++-.|.|+|+.++++..||+|++|+.+++++..++.
T Consensus 175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence 6899999999999999999999999999999999998776543
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-25 Score=151.94 Aligned_cols=179 Identities=21% Similarity=0.359 Sum_probs=159.6
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCc
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRG 72 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~ 72 (216)
.+++|..+++.+.++.+|.+|.+|+.|.+..||-..+|+.+.++.+|.+.+ .|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 478999999999999999999999999999999999999999999999987 8999999999999
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEecC-----CCeEEEEeCCCC-------ceeEEeecccccccccceEEEeeeec
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSD-----NATLSIWNPKGG-------ENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-----d~~i~~wd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
+.+..++ ...+|..+.|+++|++++.... .+.|.++|++.. .+...+.. +..
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---------------~~s 148 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---------------PDS 148 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---------------Ccc
Confidence 9999998 5678999999999998877653 466999999833 33444444 678
Q ss_pred CeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 141 GVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.++.+.|.|-+.+|++|.++|.| ..|...|+++.++|+..++++++.|.+-++||..+.+.+.
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 89999999999999999999998 5788899999999999999999999999999998876553
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1e-25 Score=163.77 Aligned_cols=178 Identities=18% Similarity=0.336 Sum_probs=149.8
Q ss_pred eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCc-------eEEEEeCCCCcc-----------------c
Q 043942 6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRN-------LQCTVEGPRGGI-----------------E 60 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~-------~~~~~~~~~~~~-----------------~ 60 (216)
+-.+|.+|.+.=++++|++.. -.|++++.|+.|++||+.... ....+.+|...+ .
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d 248 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD 248 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC
Confidence 445789999978899999954 579999999999999997643 234556666655 8
Q ss_pred CcEEEEEECC--CcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEe
Q 043942 61 DSTVWMWNAD--RGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 61 ~~~v~i~d~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (216)
|+.+.|||++ +.++.....+|.+.|.|++|+| ++..||||+.|++|++||+|+.. .+..+..
T Consensus 249 d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-------------- 314 (422)
T KOG0264|consen 249 DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-------------- 314 (422)
T ss_pred CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC--------------
Confidence 9999999999 5666777889999999999999 66788999999999999999764 4566666
Q ss_pred eeecCeEEEEeCCCC-cEEEEecccCeE----------------------------EeeeCCEEEEEEecCCCe-EEEEe
Q 043942 137 SLYDGVTCLSWPGTS-KYLVTGCVDGKV----------------------------DGHIDAIQSLSVSAIRES-LVSVS 186 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~-~~l~~~~~~~~i----------------------------~~~~~~i~~~~~~~~~~~-l~s~~ 186 (216)
|.+.|.++.|+|.. ..|++++.|+.+ .+|...|..+.|+|+..+ +++.+
T Consensus 315 -H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 315 -HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred -CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 99999999999965 578888999987 688899999999999875 56788
Q ss_pred CCCcEEEEEccc
Q 043942 187 VDGTARVFEIAE 198 (216)
Q Consensus 187 ~d~~v~vw~~~~ 198 (216)
.|+.+.||+...
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999999873
No 62
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=146.43 Aligned_cols=174 Identities=20% Similarity=0.339 Sum_probs=146.2
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-----EEEEeCCCCcc------------------------
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-----QCTVEGPRGGI------------------------ 59 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~------------------------ 59 (216)
.-+.|++.|+|.+|+|+|+++++|+.|.+|++.-++.... ..++..|.+.+
T Consensus 84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc 163 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC 163 (350)
T ss_pred eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence 3457999999999999999999999999999876543211 01122222111
Q ss_pred --------------------------------------cCcEEEEEECCCcceeeeeec--c-----CCCeeEEEEcCCC
Q 043942 60 --------------------------------------EDSTVWMWNADRGAYLNMFSG--H-----GSGLTCGDFTTDG 94 (216)
Q Consensus 60 --------------------------------------~~~~v~i~d~~~~~~~~~~~~--~-----~~~v~~~~~~~~~ 94 (216)
.|.+|++||++-..++.++.. | ...|.+++..|.|
T Consensus 164 ~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 164 KIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred eEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 899999999998877776542 2 2579999999999
Q ss_pred cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------
Q 043942 95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------- 163 (216)
Q Consensus 95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------- 163 (216)
++|++|..|....+||++.++.++.+.. |...|.++.|+|...++++++.|..|
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~p---------------hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFHP---------------HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeCC---------------CccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence 9999999999999999999999999988 99999999999999999999999988
Q ss_pred -------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 164 -------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 164 -------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
..|...+..+.|+|..--+++.+.|+++.+|-+.
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 6788889999999999889999999999999764
No 63
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.9e-25 Score=152.54 Aligned_cols=165 Identities=21% Similarity=0.217 Sum_probs=143.4
Q ss_pred EeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------------------
Q 043942 9 EILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------------- 59 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------------- 59 (216)
..++|.+.|-.++|+| ....|++++.|.+|++||.+.+++...+....+.+
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~ 138 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTY 138 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEeccc
Confidence 3458999999999998 45799999999999999999998887776543322
Q ss_pred ----------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeC
Q 043942 60 ----------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNP 111 (216)
Q Consensus 60 ----------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~ 111 (216)
..|+|.|.....-+++..+++|.....|+.|+|+|+++|+|+.|..+.+||+
T Consensus 139 ~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 139 KIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred ceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence 4477777777777888899999999999999999999999999999999999
Q ss_pred CCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecC
Q 043942 112 KGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAI 178 (216)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~ 178 (216)
...-+...+.. +.-+|+.+.|+.+|++||++++|..| ..+.++...++|+|.
T Consensus 219 ~ELiC~R~isR---------------ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 219 DELICERCISR---------------LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred hHhhhheeecc---------------ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCC
Confidence 98888888876 88999999999999999999999988 566788999999999
Q ss_pred CCeEEEEeCC
Q 043942 179 RESLVSVSVD 188 (216)
Q Consensus 179 ~~~l~s~~~d 188 (216)
..+||-+..|
T Consensus 284 ~~LLAyA~dd 293 (313)
T KOG1407|consen 284 RPLLAYACDD 293 (313)
T ss_pred CceeeEEecC
Confidence 9999866554
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.3e-26 Score=165.44 Aligned_cols=178 Identities=21% Similarity=0.327 Sum_probs=153.5
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG 72 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~ 72 (216)
+--.++.|+++.|..||++||+|+..|.|+|+|+.+...+..+..|+.++ .|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 33456789999999999999999999999999988766666666666655 7889999999998
Q ss_pred ceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 73 AYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
.....+.+|+..|.|.+|+|. +..++||+.||+|++||++.. ..+.++. |..+|..+.+-|.
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln----------------hg~pVe~vl~lps 207 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN----------------HGCPVESVLALPS 207 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec----------------CCCceeeEEEcCC
Confidence 876689999999999999994 558899999999999999977 5566666 8999999999999
Q ss_pred CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
|..+++++.+..- ..|...|+++++..++..|++++.|+.|++||+.+.+...
T Consensus 208 gs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 208 GSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVH 274 (487)
T ss_pred CCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEE
Confidence 9999998776432 4499999999999999999999999999999987776554
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.5e-25 Score=150.68 Aligned_cols=185 Identities=17% Similarity=0.289 Sum_probs=155.1
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc-----------------cCcEEEEEE
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI-----------------EDSTVWMWN 68 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~-----------------~~~~v~i~d 68 (216)
+.+++|.+.|.+++|+.+|..|++++.|+++.+|+++..+....+ .+|...+ .|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999877554433 3344322 899999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
++.++++.......+. .-+.|+|+|.+++.++.|..|.+.|.++.+.....+ ....+..++|+
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----------------~~~e~ne~~w~ 156 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----------------FKFEVNEISWN 156 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc----------------ccceeeeeeec
Confidence 9999999888755444 468899999999999999999999999888777665 56678889999
Q ss_pred CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
.++.+++.....|.+ .+|.....++.|+|+|+|||+|+.|-.+.+||+.+.-+...++...
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld 231 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD 231 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc
Confidence 888888877777877 7899999999999999999999999999999999876665554433
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=8.9e-25 Score=173.47 Aligned_cols=197 Identities=24% Similarity=0.312 Sum_probs=154.2
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC------------------CceEEEEeCCCCcc-------
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS------------------RNLQCTVEGPRGGI------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~------------------~~~~~~~~~~~~~~------- 59 (216)
+.+.++..|.+.|+|+.|+|||++||+|+.|+.|.||+... .+....+.+|...+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45667788999999999999999999999999999999873 13566777887766
Q ss_pred ---------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc------
Q 043942 60 ---------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS------ 124 (216)
Q Consensus 60 ---------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~------ 124 (216)
.|++|.+||..+...+..+++|.+.|..+.|.|-|+++|+-+.|++|++|++.+....+.+...-
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLT 219 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCc
Confidence 89999999999999999999999999999999999999999999999999987755554444310
Q ss_pred -----cccccc-----------------------ce---EEEeeeecCeEEEEeCCC-----Cc------------EEEE
Q 043942 125 -----LEFSLN-----------------------YW---MICTSLYDGVTCLSWPGT-----SK------------YLVT 156 (216)
Q Consensus 125 -----~~~~~~-----------------------~~---~~~~~~~~~v~~~~~~~~-----~~------------~l~~ 156 (216)
+..++. .+ ....+|..++.++.|+|. .. .+|+
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av 299 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV 299 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEE
Confidence 011111 11 122348888888888761 11 5677
Q ss_pred ecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 157 GCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 157 ~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
|+.|+.+ .-....|.+++|+|||..|++||.||+|.+..+++.+.
T Consensus 300 gSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 300 GSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 8888887 23356788888888888888888888888888876543
No 67
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.4e-25 Score=161.49 Aligned_cols=186 Identities=26% Similarity=0.363 Sum_probs=156.8
Q ss_pred eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcce
Q 043942 11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAY 74 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~ 74 (216)
++|...+.+++.++||+|||+|+.|..|.||+..+++.++.+.+|...+ .|+.|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 4899999999999999999999999999999999999999999998877 899999999999989
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
+.++.+|...|..+.....++.+.+|+.|+++++|++.. .....+.. +.+.+-|++|-. ..++
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg---------------~~~sidcv~~In-~~Hf 341 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRG---------------GEGSIDCVAFIN-DEHF 341 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeC---------------CCCCeeeEEEec-ccce
Confidence 999999999999999988888888899999999999953 33334444 777888998854 4678
Q ss_pred EEecccCeE---------------Ee-----------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc-ceeecCC
Q 043942 155 VTGCVDGKV---------------DG-----------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR-RATKAPS 207 (216)
Q Consensus 155 ~~~~~~~~i---------------~~-----------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~-~~~~~~~ 207 (216)
++|+.+|.| .+ +..+|++++..|...++++|+.+|.|++|.+.++- .+..+.+
T Consensus 342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYS 421 (479)
T ss_pred eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeee
Confidence 999999998 11 22389999999999999999999999999999863 3333333
Q ss_pred cceeEE
Q 043942 208 YSFKLF 213 (216)
Q Consensus 208 ~~~~~~ 213 (216)
.++..|
T Consensus 422 ls~~Gf 427 (479)
T KOG0299|consen 422 LSLVGF 427 (479)
T ss_pred cccccE
Confidence 444433
No 68
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.1e-25 Score=165.01 Aligned_cols=187 Identities=23% Similarity=0.355 Sum_probs=142.8
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce----EEEEeC---CCCcc--------------cCcEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL----QCTVEG---PRGGI--------------EDSTV 64 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~---~~~~~--------------~~~~v 64 (216)
....+++|...|.++++.|.|..|++|+.|.+|++||+..... .+.++. |.-.. .....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4457889999999999999999999999999999999976421 112211 11100 44555
Q ss_pred EEEECCCccee------------eeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCc-eeEEeeccccccccc
Q 043942 65 WMWNADRGAYL------------NMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLN 130 (216)
Q Consensus 65 ~i~d~~~~~~~------------~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~ 130 (216)
+++|-...... ..-++|...++|..|+|+. ..++|++.|+++++||+.+.+ +.+.+....
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~------ 312 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP------ 312 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc------
Confidence 66664422221 2235788999999999965 578999999999999998754 344444311
Q ss_pred ceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeC--CEEEEEEecCCCeEEEEeCCCcE
Q 043942 131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHID--AIQSLSVSAIRESLVSVSVDGTA 191 (216)
Q Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~--~i~~~~~~~~~~~l~s~~~d~~v 191 (216)
..+..-+++.++|+|+|+.||+|+.||.| .+|.. .|+++.||++|++|++-+.|+++
T Consensus 313 ----~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 313 ----AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred ----CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 11256678999999999999999999999 66766 89999999999999999999999
Q ss_pred EEEEcccccce
Q 043942 192 RVFEIAEFRRA 202 (216)
Q Consensus 192 ~vw~~~~~~~~ 202 (216)
++||++..+..
T Consensus 389 KvWDLrq~kkp 399 (641)
T KOG0772|consen 389 KVWDLRQFKKP 399 (641)
T ss_pred eeeeccccccc
Confidence 99999986643
No 69
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.9e-26 Score=162.34 Aligned_cols=185 Identities=21% Similarity=0.341 Sum_probs=156.3
Q ss_pred eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe-CCCCcc----------------cCcEEEEEECCCcc
Q 043942 11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE-GPRGGI----------------EDSTVWMWNADRGA 73 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~~----------------~~~~v~i~d~~~~~ 73 (216)
.-|.++|.|+.|+.|...||+|+.||.|++|.+.+|.+++.++ .|..++ .|.++++--+..|+
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK 339 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK 339 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch
Confidence 3478899999999999999999999999999999999988876 555554 78899999999999
Q ss_pred eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccc----------cccceEEEee------
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEF----------SLNYWMICTS------ 137 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~----------~~~~~~~~~~------ 137 (216)
++..+++|...|+...|.++|..+++++.||+|++|+.++.+++.+++...... +++.+.+|..
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 999999999999999999999999999999999999999998888777533211 1222222211
Q ss_pred ----------------eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeC
Q 043942 138 ----------------LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSV 187 (216)
Q Consensus 138 ----------------~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~ 187 (216)
..+...+.+.+|.|.++++.++|+.+ ..|...+..++-+|..+.|++-++
T Consensus 420 mn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 420 MNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred EeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc
Confidence 23345567789999999999999987 567788899999999999999999
Q ss_pred CCcEEEEE
Q 043942 188 DGTARVFE 195 (216)
Q Consensus 188 d~~v~vw~ 195 (216)
||.+++|.
T Consensus 500 DgllKLWk 507 (508)
T KOG0275|consen 500 DGLLKLWK 507 (508)
T ss_pred cchhhhcC
Confidence 99999995
No 70
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=164.72 Aligned_cols=190 Identities=17% Similarity=0.269 Sum_probs=164.1
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCcE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDST 63 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~~ 63 (216)
++++.++++.+|.+-|.|++.+|...+++|+|.|-+|++||.+.. .+.+++++|..-+ -|++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 578999999999999999999999999999999999999999875 6777888877543 7999
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCC--cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDG--KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
|++|.+....+..++++|...|+|+.|-+.| .+|++|++|.++++||..+..+++++.+ |...
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeG---------------Ht~N 229 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEG---------------HTNN 229 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhc---------------cccc
Confidence 9999999999999999999999999998744 6999999999999999999999999998 9999
Q ss_pred eEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
|..+.|+|.-.++++|++||++ .-....+++++-.+.++.++.|.++|.+. .++-..++...+..
T Consensus 230 vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~vsMd~ 308 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPAVSMDS 308 (794)
T ss_pred ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCceeecC
Confidence 9999999999999999999998 12235789999888888888887666654 34544444444433
No 71
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.5e-24 Score=166.73 Aligned_cols=207 Identities=20% Similarity=0.252 Sum_probs=163.9
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----------cc----cCcEEEEEECCCcc
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----------GI----EDSTVWMWNADRGA 73 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----------~~----~~~~v~i~d~~~~~ 73 (216)
.++.+|...|.++++|.+...+++|+ .+.+++|+..+.++++++...-. .+ .+|.+.+||+....
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 35679999999999999987777776 67899999999999998875411 01 88999999999999
Q ss_pred eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-----Ccee--------EEeec--c--cccccccceE---
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-----GENF--------HAIRR--S--SLEFSLNYWM--- 133 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-----~~~~--------~~~~~--~--~~~~~~~~~~--- 133 (216)
.+.+.++|.+.+.+++.+||++.++||+.|.+|++||+.- +... .++.. . ....++....
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 9999999999999999999999999999999999999752 1111 11111 0 0111111111
Q ss_pred -------------------EEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCC
Q 043942 134 -------------------ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE 180 (216)
Q Consensus 134 -------------------~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~ 180 (216)
..-+|.-||.++..+||++.+++|+.|..+ .+|...|.++.|.|...
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 112488889999999999999999999888 67888999999999888
Q ss_pred eEEEEeCCCcEEEEEcccccceeecCCcceeEEEe
Q 043942 181 SLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFFL 215 (216)
Q Consensus 181 ~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~~ 215 (216)
++.+||.|+.|+-||-...+.++.++.|...++.|
T Consensus 606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL 640 (888)
T ss_pred eEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence 89999999999999998888888888887777665
No 72
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.7e-25 Score=154.25 Aligned_cols=175 Identities=19% Similarity=0.243 Sum_probs=134.2
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-----E-EEEeC-CCCcc--------------cCcEEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-----Q-CTVEG-PRGGI--------------EDSTVW 65 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-----~-~~~~~-~~~~~--------------~~~~v~ 65 (216)
+..|++|.+.|++++|+.||++|||++.|+.|++|++++-.. + ..++. |...+ ...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 346789999999999999999999999999999999876321 1 11111 11111 677777
Q ss_pred EEECCCc---ceee---------eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942 66 MWNADRG---AYLN---------MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 66 i~d~~~~---~~~~---------~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 133 (216)
+|.+... .... --+-|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+..
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt----------- 226 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT----------- 226 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-----------
Confidence 7776421 1110 011244556667777788999999999999999999 998888876
Q ss_pred EEeeeecCeEEEEeCCCCcEEEEecccCeE----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942 134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTA 191 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v 191 (216)
....-+..+.+|+|+++++++..-.+ .+|...|..++|+++.+.+++.|.||+.
T Consensus 227 ----nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~w 302 (420)
T KOG2096|consen 227 ----NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKW 302 (420)
T ss_pred ----ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcE
Confidence 45556677889999999987653332 7999999999999999999999999999
Q ss_pred EEEEcc
Q 043942 192 RVFEIA 197 (216)
Q Consensus 192 ~vw~~~ 197 (216)
++||+.
T Consensus 303 riwdtd 308 (420)
T KOG2096|consen 303 RIWDTD 308 (420)
T ss_pred EEeecc
Confidence 999975
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.5e-24 Score=150.65 Aligned_cols=184 Identities=20% Similarity=0.306 Sum_probs=150.7
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC------------------ceEEEEeCCCCcc----------
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR------------------NLQCTVEGPRGGI---------- 59 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------------------~~~~~~~~~~~~~---------- 59 (216)
..+..|++++.+.+|+|||.++|||+.|..|++.|.+.. -.++++..|...+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 456789999999999999999999999999999998721 1334444444433
Q ss_pred ------cCcEEEEEECCCcce---eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccccc
Q 043942 60 ------EDSTVWMWNADRGAY---LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLN 130 (216)
Q Consensus 60 ------~~~~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 130 (216)
.|++|++||..+... .+.++ ...+|.++.|+|.|.+|+.|..-..+++||+.+-++...-...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd------- 257 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD------- 257 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc-------
Confidence 899999999975432 22333 4578999999999999999999999999999988765433321
Q ss_pred ceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
..|.+.|+++.+++.+++.++++.||.| ..|. ..|.+..|..+|+|+++.+.|..+++|
T Consensus 258 -----~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 258 -----DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred -----cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 1288999999999999999999999998 4453 579999999999999999999999999
Q ss_pred Ecccccceee
Q 043942 195 EIAEFRRATK 204 (216)
Q Consensus 195 ~~~~~~~~~~ 204 (216)
.+.+++.+..
T Consensus 333 Ei~t~R~l~~ 342 (430)
T KOG0640|consen 333 EISTGRMLKE 342 (430)
T ss_pred eecCCceEEE
Confidence 9999887653
No 74
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=6.9e-26 Score=160.64 Aligned_cols=179 Identities=20% Similarity=0.407 Sum_probs=156.0
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce---EEEEeCCCCcc--------------cCcE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL---QCTVEGPRGGI--------------EDST 63 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~---~~~~~~~~~~~--------------~~~~ 63 (216)
+++|++++++-+|.+.|..+.|+. .+++|++.|.++.+||+..... ...+.+|...+ .|.+
T Consensus 264 v~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRT 341 (499)
T KOG0281|consen 264 VNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 341 (499)
T ss_pred ccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCce
Confidence 478999999999999999999985 5999999999999999987632 12333444433 8999
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
+++|++.++..++++.+|...|.|+.+ .++++++|+.|.+|++||+..|..+..+.+ |+.-|.
T Consensus 342 ikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG---------------HEeLvR 404 (499)
T KOG0281|consen 342 IKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG---------------HEELVR 404 (499)
T ss_pred EEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc---------------hHHhhh
Confidence 999999999999999999999999988 489999999999999999999999999987 999999
Q ss_pred EEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 144 CLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
++.|+ .+.+++|+.||.+ ..|.+.|-.+.| |...+++++.|.+|.|||+.++.
T Consensus 405 ciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 405 CIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred heeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence 99996 4679999999998 567788999988 67789999999999999998765
Q ss_pred ce
Q 043942 201 RA 202 (216)
Q Consensus 201 ~~ 202 (216)
+.
T Consensus 481 ~~ 482 (499)
T KOG0281|consen 481 PS 482 (499)
T ss_pred cc
Confidence 43
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=2.1e-24 Score=150.97 Aligned_cols=180 Identities=18% Similarity=0.246 Sum_probs=157.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC------------ceEEEEeCCCCcc------cCcEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR------------NLQCTVEGPRGGI------EDSTVWM 66 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~------------~~~~~~~~~~~~~------~~~~v~i 66 (216)
-.+++|-.|.++|+++.|+|....|++++.|++|+++|+... +.+..+..|..+. ...++++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 467889999999999999999999999999999999998643 4566777777665 7788999
Q ss_pred EECCCcceeeee---eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 67 WNADRGAYLNMF---SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 67 ~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
||+++.++.... ..|.+.|+++.+++.++..+||+.||.|++||--+++++.++.... ....|.
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-------------~gsevc 309 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-------------GGSEVC 309 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-------------CCceee
Confidence 999998876554 3588999999999999999999999999999999999988876532 467899
Q ss_pred EEEeCCCCcEEEEecccCeE------------------------------------------------------------
Q 043942 144 CLSWPGTSKYLVTGCVDGKV------------------------------------------------------------ 163 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i------------------------------------------------------------ 163 (216)
+..|..+|+++++++.|..+
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 99999999999999999877
Q ss_pred ---EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 164 ---DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 164 ---~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.+|.+.+..+.-||.+.-+++|+.|-..|+|--+
T Consensus 390 l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 6889999999999999999999999999999643
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=154.94 Aligned_cols=195 Identities=21% Similarity=0.254 Sum_probs=161.7
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc----------------cCcEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
..+.+..|.+.|+-+.||++|+|||+++.|.+..+|++... +..+++.+|..++ .+..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34567889999999999999999999999999999987654 4577888888766 5666999
Q ss_pred EECCCcceeeeee-ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 67 WNADRGAYLNMFS-GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 67 ~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
||..+|.....+. ++...+.+.+|.|||..+++|+.|+.+..||++ |......... ....|.++
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gv--------------r~~~v~dl 360 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGV--------------RDPKVHDL 360 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhccccc--------------ccceeEEE
Confidence 9999998887765 345789999999999999999999999999998 5544444431 23458899
Q ss_pred EeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942 146 SWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL 212 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~ 212 (216)
+.++||+++++.+.|..+ ..-..+|++++.|.+++++++-=.+..+++||+++.+.+.+..++.-..
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 999999999998888877 2345799999999999999998899999999999888777776666665
Q ss_pred EEe
Q 043942 213 FFL 215 (216)
Q Consensus 213 ~~~ 215 (216)
|++
T Consensus 441 fiI 443 (519)
T KOG0293|consen 441 FII 443 (519)
T ss_pred eEE
Confidence 553
No 77
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=156.33 Aligned_cols=176 Identities=23% Similarity=0.302 Sum_probs=154.4
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC-------
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD------- 70 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~------- 70 (216)
.++|.+++-+|+|.+|+.|...|.+++|.+.+|..+..+..|-..+ .||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4679999999999999999899999999999998777666665544 89999999863
Q ss_pred --CcceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 71 --RGAYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 71 --~~~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
+-+++..+..|.-+|+++...+- ..+++|++.|+++++||+..+..+..+. ....+.+++
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----------------fp~si~av~ 224 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----------------FPSSIKAVA 224 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe----------------cCCcceeEE
Confidence 34677889999999999988764 4689999999999999999999888876 678899999
Q ss_pred eCCCCcEEEEecccCeE------------------------------EeeeC--CEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 147 WPGTSKYLVTGCVDGKV------------------------------DGHID--AIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i------------------------------~~~~~--~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
.+|..+.+++|+.+|.+ .+|.+ +|++++.+-||.+|++|+.||+|.||
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 99999999999999998 56666 99999999999999999999999999
Q ss_pred Ecccccceeec
Q 043942 195 EIAEFRRATKA 205 (216)
Q Consensus 195 ~~~~~~~~~~~ 205 (216)
|+.+.+++..+
T Consensus 305 di~S~Q~iRtl 315 (476)
T KOG0646|consen 305 DIYSKQCIRTL 315 (476)
T ss_pred ecchHHHHHHH
Confidence 99887765443
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=155.42 Aligned_cols=178 Identities=19% Similarity=0.276 Sum_probs=156.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------- 59 (216)
+.+.+|.+..++|+++.|.++++.+++++.|+.+++|+....+...++.+|...+
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WD 289 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWD 289 (459)
T ss_pred hhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhh
Confidence 3566777888899999999999999999999999999999999888888887755
Q ss_pred ------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEE
Q 043942 60 ------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIW 109 (216)
Q Consensus 60 ------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~w 109 (216)
.|++|++||+++..+......+. .|+++..++++..+++++.|.++.+.
T Consensus 290 l~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 290 LQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred hhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeee
Confidence 78889999999999988888664 89999999999999999999999999
Q ss_pred eCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeC-CEEEE
Q 043942 110 NPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHID-AIQSL 173 (216)
Q Consensus 110 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~-~i~~~ 173 (216)
|+++....+.+...... .....+.+.|+|++.|+++|+.||.+ ..+.. .|+++
T Consensus 369 DlRt~eI~~~~sA~g~k-----------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~ 437 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFK-----------CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL 437 (459)
T ss_pred ecccccEEEEeeccccc-----------cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence 99998888888764322 34558999999999999999999998 22222 69999
Q ss_pred EEecCCCeEEEEeCCCcEEEE
Q 043942 174 SVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 174 ~~~~~~~~l~s~~~d~~v~vw 194 (216)
+|+|.|.+|++++.++.+.+|
T Consensus 438 ~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 438 SWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEcCCCchhhcccCCcceEec
Confidence 999999999999999999999
No 79
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.6e-24 Score=147.37 Aligned_cols=191 Identities=20% Similarity=0.352 Sum_probs=141.6
Q ss_pred cccceEEEEEcc-CCCEEEEEcCCCcEEEEECCC-CceEE-EEeCCCCcc----------------cCcEEEEEECCCcc
Q 043942 13 HKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSS-RNLQC-TVEGPRGGI----------------EDSTVWMWNADRGA 73 (216)
Q Consensus 13 h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~-~~~~~-~~~~~~~~~----------------~~~~v~i~d~~~~~ 73 (216)
-.+.|.+++||| ...+++.+|.|++||+|+++. +.... ....+..++ .|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 457899999999 556777999999999999987 33222 122222222 89999999999995
Q ss_pred eeeeeeccCCCeeEEEEcCCCc--EEEEecCCCeEEEEeCCCCceeEEeecccccc-------------cccceEEE---
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGK--TICTGSDNATLSIWNPKGGENFHAIRRSSLEF-------------SLNYWMIC--- 135 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~--~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~-------------~~~~~~~~--- 135 (216)
. ..+..|.++|.++.|-+... .|+||+.|++|++||++...++..+..+.-.. ..+.+.+.
T Consensus 106 ~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 106 V-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred e-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 4 56667999999999987554 89999999999999999888777665422111 01111111
Q ss_pred ----------eeeecCeEEEEeCCCCcEEEEecccCeE----------------Eeee---------CCEEEEEEecCCC
Q 043942 136 ----------TSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHI---------DAIQSLSVSAIRE 180 (216)
Q Consensus 136 ----------~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~---------~~i~~~~~~~~~~ 180 (216)
....-.+++++..++....+.|+-+|.+ ..|. ..|.+++|+|...
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg 264 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG 264 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc
Confidence 1134457888888888778999999987 4454 2588999999999
Q ss_pred eEEEEeCCCcEEEEEcccccceee
Q 043942 181 SLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 181 ~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
.|+|+|.||++.+||-....++..
T Consensus 265 tlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 265 TLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred eEEEecCCceEEEecchhhhhhhc
Confidence 999999999999999776555443
No 80
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.7e-24 Score=168.11 Aligned_cols=177 Identities=19% Similarity=0.271 Sum_probs=165.4
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCc
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRG 72 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~ 72 (216)
.+..-...|..++|+|...+++++-..|.|++||.+-+.++..+..|.+++ .|..|++|+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 344556789999999999999999999999999999999999998888877 8999999999999
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
+++.++.+|-..|..+.|++.-.+|+++|+|.+|++|+..+++++..+.+ |...|.|..|+|...
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG---------------HnHYVMcAqFhptED 148 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG---------------HNHYVMCAQFHPTED 148 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec---------------CceEEEeeccCCccc
Confidence 99999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred EEEEecccCeE-------------------------------------------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942 153 YLVTGCVDGKV-------------------------------------------DGHIDAIQSLSVSAIRESLVSVSVDG 189 (216)
Q Consensus 153 ~l~~~~~~~~i-------------------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~ 189 (216)
.+++++-|.++ .+|...|.-++|+|.-.++++|++|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 99999999988 78889999999999999999999999
Q ss_pred cEEEEEccccc
Q 043942 190 TARVFEIAEFR 200 (216)
Q Consensus 190 ~v~vw~~~~~~ 200 (216)
.|++|.....+
T Consensus 229 qVKlWrmnetK 239 (1202)
T KOG0292|consen 229 QVKLWRMNETK 239 (1202)
T ss_pred eeeEEEecccc
Confidence 99999987544
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=3.4e-25 Score=159.71 Aligned_cols=199 Identities=18% Similarity=0.247 Sum_probs=157.2
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
..+..|.+.+..+.|-++...|++|+.|..|++|+....+ ...++.+..+.+ .|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4567899999999999998999999999999999987765 445555443333 8999999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccccc--ceEEEe-----------
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLN--YWMICT----------- 136 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~----------- 136 (216)
...+...++.+|.+.|+++.|......+++|+.|.+|+.||+.+..+..++...+..++.. ......
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWD 328 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEe
Confidence 9999999999999999999998877779999999999999999876655444322111110 111111
Q ss_pred ----------eeecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942 137 ----------SLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 137 ----------~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d 188 (216)
...+.|+++..++++..+.+++.|..+ .......+.+.|||++.|+++||.|
T Consensus 329 ~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d 408 (459)
T KOG0288|consen 329 IRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD 408 (459)
T ss_pred ccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence 133468999999999999999999887 1223457899999999999999999
Q ss_pred CcEEEEEcccccceeecC
Q 043942 189 GTARVFEIAEFRRATKAP 206 (216)
Q Consensus 189 ~~v~vw~~~~~~~~~~~~ 206 (216)
|.|+||++.+++....+.
T Consensus 409 gsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 409 GSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred CcEEEEEccCceEEEEec
Confidence 999999999988776543
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-24 Score=162.64 Aligned_cols=196 Identities=18% Similarity=0.364 Sum_probs=155.7
Q ss_pred cccceE---EEEEcc-CCCEEEEEcCCCcEEEEECCCCc------eEEEEeCCCCcc----------------cCcEEEE
Q 043942 13 HKDSFS---SLAFST-DGQLLASGGFHGLVQNRDTSSRN------LQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 13 h~~~v~---~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~~~~~~----------------~~~~v~i 66 (216)
|...|. .+..+. .+++|+|||.||.|++|+..... ....++.|...+ .|.+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 445555 555554 56789999999999999986532 244555555433 8999999
Q ss_pred EECCCc--ceeeeeeccCCCeeEEEE-cCCCcEEEEecCCCeEEEEeCCCCc--eeEEeecccccccccceEEEeeeecC
Q 043942 67 WNADRG--AYLNMFSGHGSGLTCGDF-TTDGKTICTGSDNATLSIWNPKGGE--NFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 67 ~d~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~t~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
|+...+ -++.+++.|...|.|+++ .++...+|+|+-|+.|.+||+.++. .+..+....... ...++..+
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s------l~sG~k~s 173 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS------LGSGPKDS 173 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc------CCCCCccc
Confidence 999877 577888999999999999 8889999999999999999999883 333333211110 01147889
Q ss_pred eEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
|++++.++.|..+++|+.++.+ .+|...|..+..++||+.++++|.||+|++||+...+++.....
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe
Confidence 9999999999999999998877 89999999999999999999999999999999999999887666
Q ss_pred cceeEEE
Q 043942 208 YSFKLFF 214 (216)
Q Consensus 208 ~~~~~~~ 214 (216)
|.-.++.
T Consensus 254 H~e~VWa 260 (735)
T KOG0308|consen 254 HKEGVWA 260 (735)
T ss_pred ccCceEE
Confidence 6554443
No 83
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=163.03 Aligned_cols=180 Identities=18% Similarity=0.285 Sum_probs=144.1
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-------------------------------
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI------------------------------- 59 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~------------------------------- 59 (216)
+|...-+.++|.|+|+.|.+++.||.|++|+..+. +....+..+...+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence 68899999999999999999999999999987654 2222222111100
Q ss_pred -------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 043942 60 -------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG 114 (216)
Q Consensus 60 -------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~ 114 (216)
.|-.|++.++........+++|.++|.++.|+|++++||+.+.||.|++||+.++
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 6667777777777778889999999999999999999999999999999999999
Q ss_pred ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecC
Q 043942 115 ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAI 178 (216)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~ 178 (216)
.....+..-...+... ....+..++|+|++..++..+.|+.| ..+...+..+.|+|+
T Consensus 171 ~~~~tl~~v~k~n~~~-------~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFI-------LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred hhhhhcccCCcccccc-------ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 8877766532222111 24567889999998888888888877 334455999999999
Q ss_pred CCeEEEEeCCCcEEEEEccc
Q 043942 179 RESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 179 ~~~l~s~~~d~~v~vw~~~~ 198 (216)
|+|||+++.||.|.|||..+
T Consensus 244 G~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CcEEeeeccCCcEEEEeccc
Confidence 99999999999999999985
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=151.37 Aligned_cols=179 Identities=16% Similarity=0.251 Sum_probs=158.2
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~ 78 (216)
..+.++...|....+++|+.|..+.++|..+++.+..+++|...+ .|..|++|...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 467888888887899999999999999999999999999887755 8899999999887777778
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
..|..+|+.+..+|.|.+|++++.|++..+.|++++..+....... ..-.+++.+|+|||..|.+|.
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~-------------s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET-------------SDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc-------------ccceeEEeeEcCCceEEeccC
Confidence 8899999999999999999999999999999999999877665310 234589999999999999999
Q ss_pred ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 159 VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 159 ~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
.|+.+ .+|.++|..++|+.||-||+++++|+.|++||++..+....++
T Consensus 367 ~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 99998 6899999999999999999999999999999999876554443
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=149.31 Aligned_cols=193 Identities=17% Similarity=0.222 Sum_probs=160.6
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~ 65 (216)
.+++.+.+++||...|+.+.++|+...+++++.|..|+||.............|..++ .|++..
T Consensus 249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 3567788999999999999999999999999999999999998877666666666655 899999
Q ss_pred EEECCCcceeeeeeccC--CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 66 MWNADRGAYLNMFSGHG--SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
+.|++++..+....... -.+++.+|+|||..+.+|..|+.+++||+.++..+..|+. |.++|.
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg---------------ht~~vk 393 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG---------------HTGPVK 393 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC---------------CCCcee
Confidence 99999998887766322 3589999999999999999999999999999999999988 999999
Q ss_pred EEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc--cccceeecC
Q 043942 144 CLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA--EFRRATKAP 206 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~--~~~~~~~~~ 206 (216)
.++|+.+|-+++++++|+.+ ......+.++.|++.|++|+.++.|=.|++++-. +...+..++
T Consensus 394 ~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 394 AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh
Confidence 99999999999999999966 1222369999999999999999877666665522 344444444
Q ss_pred Ccc
Q 043942 207 SYS 209 (216)
Q Consensus 207 ~~~ 209 (216)
.++
T Consensus 474 ~~s 476 (506)
T KOG0289|consen 474 DHS 476 (506)
T ss_pred hcc
Confidence 433
No 86
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=5.4e-24 Score=157.42 Aligned_cols=180 Identities=19% Similarity=0.313 Sum_probs=156.5
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc------------------ccCcEEEEEECCCccee
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG------------------IEDSTVWMWNADRGAYL 75 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------------~~~~~v~i~d~~~~~~~ 75 (216)
..-|.++.+.|||+.|++|+.-.++.|||+......-..+....+ ..||.|.|||+.....+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 456889999999999999999999999999876443332222211 18999999999999999
Q ss_pred eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
+.+++|...+.||.+++||..|.||+-|++|+.||+++++.++... ....|.++...|++.+++
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----------------F~SQIfSLg~cP~~dWla 608 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----------------FSSQIFSLGYCPTGDWLA 608 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----------------hhhhheecccCCCcccee
Confidence 9999999999999999999999999999999999999999887766 678899999999999999
Q ss_pred EecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 156 TGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 156 ~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
+|-+++.+ .-|..-|.++.|.+.|+++++.+.|+.+..|...-+..+.+.++.+
T Consensus 609 vGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S 675 (705)
T KOG0639|consen 609 VGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS 675 (705)
T ss_pred eecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC
Confidence 99998887 4677889999999999999999999999999988887777665544
No 87
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=4.2e-23 Score=147.58 Aligned_cols=172 Identities=24% Similarity=0.459 Sum_probs=144.5
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-------------------------CceEEEEeCCCCcc-----
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-------------------------RNLQCTVEGPRGGI----- 59 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------------~~~~~~~~~~~~~~----- 59 (216)
-+||...|-+++..++|..+++|+.|..+++|+..+ +.++-++.+|..++
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 349999999999999999999999999999999321 12345566676665
Q ss_pred ----------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce---eEEeeccccc
Q 043942 60 ----------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLE 126 (216)
Q Consensus 60 ----------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~ 126 (216)
.|.+|+.||+.++..+.++.+ ...+++++++|..++|++|+.|..+++||.+++.- .+.+..
T Consensus 269 ~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g---- 343 (423)
T KOG0313|consen 269 SDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG---- 343 (423)
T ss_pred cCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec----
Confidence 899999999999999888874 46699999999999999999999999999997642 344444
Q ss_pred ccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942 127 FSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGT 190 (216)
Q Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~ 190 (216)
|..-|.++.|+|... .|++++.|+.+ .+|...|.++.|+ ++.++++||.|++
T Consensus 344 -----------H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 344 -----------HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNK 411 (423)
T ss_pred -----------chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcce
Confidence 999999999999665 57889999988 6888999999994 4678999999999
Q ss_pred EEEEEccc
Q 043942 191 ARVFEIAE 198 (216)
Q Consensus 191 v~vw~~~~ 198 (216)
++++.-..
T Consensus 412 l~i~~~~~ 419 (423)
T KOG0313|consen 412 LRIFKGSP 419 (423)
T ss_pred EEEecccc
Confidence 99987543
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.2e-24 Score=149.67 Aligned_cols=185 Identities=23% Similarity=0.285 Sum_probs=148.5
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC------CCceEE------EEeCCCCcc--cCcEEEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS------SRNLQC------TVEGPRGGI--EDSTVWM 66 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~------~~~~~~------~~~~~~~~~--~~~~v~i 66 (216)
|++|+++.++.||.+.|+++.|++.+.++++++.|++..||... ...... +.+.+.... .|+..+.
T Consensus 177 ~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 177 LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 58899999999999999999999999999999999999999732 111000 001000000 1221111
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
=...-..++..+.+|.+.|.+..|-..|+.+++++.|++..+||++++..+..+.+ |....+.++
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG---------------Hd~ELtHcs 321 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG---------------HDSELTHCS 321 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC---------------cchhccccc
Confidence 10011246677899999999999999999999999999999999999999999988 999999999
Q ss_pred eCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 147 WPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
-+|..+++++++.|... ++|...|+++.|.-+.+ +++++.|.+|++||+++.+.
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccC
Confidence 99999999999999877 89999999999987655 78999999999999998653
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-22 Score=149.46 Aligned_cols=178 Identities=20% Similarity=0.298 Sum_probs=151.3
Q ss_pred eeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMW 67 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~ 67 (216)
.++.+++|+.+|....|+|+ +..|++|+.|+.+++||+.+......+.+|..-+ .||.|++|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 45678899999999999995 5678899999999999999998876888887654 89999999
Q ss_pred ECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEE
Q 043942 68 NADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 68 d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
|++.. ..+.++. |..+|..+.+-|.|..+++++.. .+++||+-+|.. +..... |...|+|+
T Consensus 182 DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~---------------H~KtVTcL 244 (487)
T KOG0310|consen 182 DTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFN---------------HNKTVTCL 244 (487)
T ss_pred EeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhc---------------ccceEEEE
Confidence 99976 6666665 99999999999999999998754 799999996644 444443 88999999
Q ss_pred EeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 146 SWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
++..++..|++++-|+.+ ....++|.+++.+|+++.++.|-.+|.+.+=+....+
T Consensus 245 ~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred EeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 999999999999999998 4556899999999999999999999998877554433
No 90
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=1.9e-22 Score=156.32 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=130.5
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCccee---eeeeccCCCeeEEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYL---NMFSGHGSGLTCGD 89 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~---~~~~~~~~~v~~~~ 89 (216)
|-..|.....++++..+++++.+.....|+...+ ...++.-+.|+.. ..+.+|.+.|.+++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg----------------~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~ 82 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGS----------------TAVLKHTDYGKLASNPPILLGQEGPIIDVA 82 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCc----------------eEEeeccccccCCCCCceEeCCCCCEEEEE
Confidence 3345666777788788899998998999986432 2333333334322 24778999999999
Q ss_pred EcC-CCcEEEEecCCCeEEEEeCCCCc-------eeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEeccc
Q 043942 90 FTT-DGKTICTGSDNATLSIWNPKGGE-------NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVD 160 (216)
Q Consensus 90 ~~~-~~~~l~t~~~d~~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~ 160 (216)
|+| ++++|++|+.|++|++||+.++. .+..+.. |...|.+++|+|++ ++|++++.|
T Consensus 83 fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g---------------H~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 83 FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG---------------HTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC---------------CCCcEEEEEeCcCCCCEEEEEeCC
Confidence 999 88999999999999999998653 2233333 88999999999985 689999999
Q ss_pred CeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942 161 GKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 161 ~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
+.+ ..|...|.+++|+|+|.+|++++.|+.|++||+++++....+..|
T Consensus 148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 988 457889999999999999999999999999999988776655444
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.2e-22 Score=138.94 Aligned_cols=185 Identities=16% Similarity=0.193 Sum_probs=148.1
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWM 66 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i 66 (216)
|.+.+.++.+.||...|.+++.+|-++.+++++.|++|++||++..++...+.....++ ....|++
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEE
Confidence 45788999999999999999999988999999999999999999888777766554443 3449999
Q ss_pred EECCCc--ceeeeee---ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 67 WNADRG--AYLNMFS---GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 67 ~d~~~~--~~~~~~~---~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
||++.- .+..++. +.....+.+.|+|||+.++.+...+.+++.|.-+|..+..+...+.. ..-
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~------------~~~ 234 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA------------GNL 234 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC------------CCc
Confidence 999852 3444433 33567899999999999999999999999999999988888763221 112
Q ss_pred eEEEEeCCCCcEEEEecccCeE--------------Ee-eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKV--------------DG-HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i--------------~~-~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
....+|+||++++++|+.||.+ .+ +..++.++.|+|.-..++++ +..+.+|-....
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 2678899999999999999998 23 56788999999987777766 567888866543
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.8e-22 Score=139.18 Aligned_cols=195 Identities=17% Similarity=0.326 Sum_probs=147.3
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----------c----cCcEEEEEECCCcceeeeee
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----------I----EDSTVWMWNADRGAYLNMFS 79 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----------~----~~~~v~i~d~~~~~~~~~~~ 79 (216)
.+.|.++.|+|.++.|+.+++||++++||....+....+....+- + -|+.|+.+|++++.... +.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~-ig 91 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQ-IG 91 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCccee-ec
Confidence 578999999999999999999999999999876544433321111 1 89999999999887654 55
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc--cc--ccceEE---------------------
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE--FS--LNYWMI--------------------- 134 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~--~~--~~~~~~--------------------- 134 (216)
.|..++.|+.+++....+++|+.|++|++||.+.......+...... .+ .+.+.+
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~ 171 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQR 171 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhh
Confidence 69999999999998889999999999999999953322222211100 00 000000
Q ss_pred -EeeeecCeEEEEeCCCCcEEEEecccCeE------------------Eeee---------CCEEEEEEecCCCeEEEEe
Q 043942 135 -CTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHI---------DAIQSLSVSAIRESLVSVS 186 (216)
Q Consensus 135 -~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~---------~~i~~~~~~~~~~~l~s~~ 186 (216)
.....-.++++++-|++.-+++++-||.+ ..|. .+|.+++|+|-...|+||+
T Consensus 172 reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgG 251 (323)
T KOG1036|consen 172 RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGG 251 (323)
T ss_pred ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecC
Confidence 11144568899999988889999999998 3332 4899999999999999999
Q ss_pred CCCcEEEEEcccccceeecCCcc
Q 043942 187 VDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 187 ~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
.||.|.+||+.+.+.+..++.+.
T Consensus 252 sDG~V~~Wd~~~rKrl~q~~~~~ 274 (323)
T KOG1036|consen 252 SDGIVNIWDLFNRKRLKQLAKYE 274 (323)
T ss_pred CCceEEEccCcchhhhhhccCCC
Confidence 99999999999988887776653
No 93
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=138.60 Aligned_cols=191 Identities=20% Similarity=0.256 Sum_probs=159.0
Q ss_pred eEEeeccccceEEEEEcc---CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942 7 ASEILGHKDSFSSLAFST---DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------ 59 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------ 59 (216)
..+..+|..+|-.++||| +|-+|++++.|+.-.+-+-+++..+.++++|.+.+
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 345679999999999996 78899999999999999999999999999998876
Q ss_pred ---------------------------------cCcEEEEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCe
Q 043942 60 ---------------------------------EDSTVWMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT 105 (216)
Q Consensus 60 ---------------------------------~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~ 105 (216)
.+.-+++||++.. .+...+.+|.+.|..+-|....+.+++++.|++
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 4444566666533 344567789999999999998999999999999
Q ss_pred EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------------EeeeCCEEEE
Q 043942 106 LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSL 173 (216)
Q Consensus 106 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~ 173 (216)
|++||.+++..++.+. ...+|+++.++++|.++.++...+.. ..-...|.+.
T Consensus 167 VRLWD~rTgt~v~sL~----------------~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SA 230 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE----------------FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESA 230 (334)
T ss_pred eEEEEeccCcEEEEEe----------------cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccc
Confidence 9999999999999987 67899999999999998877655544 2334578999
Q ss_pred EEecCCCeEEEEeCCCcEEEEEcccccceeec-CCcceeEE
Q 043942 174 SVSAIRESLVSVSVDGTARVFEIAEFRRATKA-PSYSFKLF 213 (216)
Q Consensus 174 ~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~ 213 (216)
.++|+...+++|+.|..++.||+.+++.+... ..|.-+++
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 99999999999999999999999999887663 44444444
No 94
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=8.2e-23 Score=142.16 Aligned_cols=176 Identities=23% Similarity=0.356 Sum_probs=147.7
Q ss_pred eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCc------eEEE----Ee-----CCCCcc---------------
Q 043942 11 LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRN------LQCT----VE-----GPRGGI--------------- 59 (216)
Q Consensus 11 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~------~~~~----~~-----~~~~~~--------------- 59 (216)
+.|.+.|+++...+ .|+|+++|+.||.|.+||+++-. .+.. +. +|.-++
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999998 68999999999999999997643 1111 10 111111
Q ss_pred --cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC---CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942 60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD---GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 134 (216)
.|.++++||.++.+....++ -++.|.+-+++|- .-++|+|..|-.|++.|+.+|...+.+.+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG------------ 186 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG------------ 186 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc------------
Confidence 79999999999998887777 5677999999983 44788899999999999999999999988
Q ss_pred EeeeecCeEEEEeCCCCcE-EEEecccCeE-----------------------------EeeeCCEEEEEEecCCCeEEE
Q 043942 135 CTSLYDGVTCLSWPGTSKY-LVTGCVDGKV-----------------------------DGHIDAIQSLSVSAIRESLVS 184 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~-l~~~~~~~~i-----------------------------~~~~~~i~~~~~~~~~~~l~s 184 (216)
|.+.|.++.|+|...+ |++|+.||.+ ..|.+.+.+++|+.++.++++
T Consensus 187 ---Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 187 ---HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred ---ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh
Confidence 9999999999998775 6789999988 577889999999999999999
Q ss_pred EeCCCcEEEEEcccccce
Q 043942 185 VSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 185 ~~~d~~v~vw~~~~~~~~ 202 (216)
++.|..+++|+..+++..
T Consensus 264 ~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ccCccceEEeecccCccc
Confidence 999999999999887643
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.1e-23 Score=139.14 Aligned_cols=179 Identities=17% Similarity=0.245 Sum_probs=145.5
Q ss_pred ceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc------------------cCc
Q 043942 5 DWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI------------------EDS 62 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~------------------~~~ 62 (216)
+++.+|.||.++|+.++|.. -|.+||++++||.|.||.-++++-.+ ....|...+ .||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 57889999999999999976 79999999999999999998884333 223333322 899
Q ss_pred EEEEEECCCc---ceeeeeeccCCCeeEEEEcCC---C-----------cEEEEecCCCeEEEEeCCCCcee--EEeecc
Q 043942 63 TVWMWNADRG---AYLNMFSGHGSGLTCGDFTTD---G-----------KTICTGSDNATLSIWNPKGGENF--HAIRRS 123 (216)
Q Consensus 63 ~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~t~~~d~~i~~wd~~~~~~~--~~~~~~ 123 (216)
.|.+.+.+.. .......+|.-.|++++|.|. | +.|++|+.|..|++|+..++.-. ..+..
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~- 205 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG- 205 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh-
Confidence 9999998754 223445679999999999985 4 56999999999999999986432 23444
Q ss_pred cccccccceEEEeeeecCeEEEEeCCCC----cEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeE
Q 043942 124 SLEFSLNYWMICTSLYDGVTCLSWPGTS----KYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESL 182 (216)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l 182 (216)
|.+-|+.++|.|.- .+|++++.||.+ ......+..+.||+.|+.|
T Consensus 206 --------------H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 206 --------------HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNIL 271 (299)
T ss_pred --------------cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEE
Confidence 99999999999954 579999999998 2344579999999999999
Q ss_pred EEEeCCCcEEEEEccc
Q 043942 183 VSVSVDGTARVFEIAE 198 (216)
Q Consensus 183 ~s~~~d~~v~vw~~~~ 198 (216)
+.++.|++|.+|.-..
T Consensus 272 aVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 272 AVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCCcEEEEEEeCC
Confidence 9999999999998554
No 96
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=155.80 Aligned_cols=176 Identities=24% Similarity=0.402 Sum_probs=157.4
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE-EeCCCCcc----------------cCcEEEEEECCCccee
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT-VEGPRGGI----------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~----------------~~~~v~i~d~~~~~~~ 75 (216)
|...+.+..|. ..++++++.|+++++||..++..+.. +.+|.+++ .|.++++||..++.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888888 56899999999999999999998888 99988876 6999999999999999
Q ss_pred eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
..+.+|.+.+.++... ...+++|+.|.+|++|++.++..+..+.+ |.++|+++..+ +.+++
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~---------------h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG---------------HTGPVNCVQLD--EPLLV 345 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc---------------ccccEEEEEec--CCEEE
Confidence 9999999999999875 45788899999999999999999999987 99999999988 88999
Q ss_pred EecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc-cceeecCCcce
Q 043942 156 TGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF-RRATKAPSYSF 210 (216)
Q Consensus 156 ~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~-~~~~~~~~~~~ 210 (216)
+|+.|+.| .+|..+|+++.+.+. ..+++|+.|++|++||+.+. +++..+..|..
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~ 414 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS 414 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc
Confidence 99999977 789999999988665 89999999999999999999 77766665543
No 97
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.1e-24 Score=163.15 Aligned_cols=181 Identities=22% Similarity=0.363 Sum_probs=164.8
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCc
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRG 72 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~ 72 (216)
.+..|...|.++..-..++.+++|+.|..+.+|.+.....+..+.+|..++ .+|+|++||+++.
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 445788899999987788999999999999999999888888888888877 8999999999999
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
+.++++.+|...+.++.|+|-+.+.+.|+.|..+++||.+...+.+.+.. |...+..+.|+|+|+
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s---------------~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS---------------HTRVVDVLRLSPDGR 167 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC---------------CcceeEEEeecCCCc
Confidence 99999999999999999999999999999999999999998888888887 888999999999999
Q ss_pred EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 153 YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 153 ~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
+++.+++|..+ ..|.+.+..+.|+|..-++++||.|+++++||+++.+.+..
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 99999998877 56889999999999999999999999999999997765543
No 98
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=1e-22 Score=161.95 Aligned_cols=175 Identities=21% Similarity=0.279 Sum_probs=136.0
Q ss_pred cccceEEEEEccCCCEEEEEc--CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGG--FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDF 90 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 90 (216)
+...|.++..+|+|..+|||+ .|+.+++|+...-. ....-+|..-.+.+..+..|.+.|+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl--------------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVL--------------DEKEEKNENLPKHLCTMDDHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeecccccc--------------chhhhhhcccchhheeeccccCceeEEEE
Confidence 445799999999999999999 89999999875421 01111222234556677789999999999
Q ss_pred cCCCcEEEEecCCCeEEEEeCCCCceeEEeec---ccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942 91 TTDGKTICTGSDNATLSIWNPKGGENFHAIRR---SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---- 163 (216)
Q Consensus 91 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---- 163 (216)
+|||++||+|++|+.|.+|+......-..+.. ......-+......+|...|..++|+|++.++++++.|+.+
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence 99999999999999999999874111111111 11111222344555699999999999999999999999988
Q ss_pred ----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 164 ----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.+|.+.|-.+.|+|-|+||++-+.|++|+||++.+...
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i 205 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI 205 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee
Confidence 89999999999999999999999999999999877443
No 99
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=1.9e-21 Score=151.90 Aligned_cols=163 Identities=13% Similarity=0.137 Sum_probs=129.1
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCe
Q 043942 27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNAT 105 (216)
Q Consensus 27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~ 105 (216)
...++++.+....+|+...|. ..+.+++|+..+..++..+.+|.+.|.+++|+|+ +.+|++|+.|+.
T Consensus 31 s~~ia~n~~~~A~~w~~~gGG------------~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~Dgt 98 (568)
T PTZ00420 31 SCGIACSSGFVAVPWEVEGGG------------LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLT 98 (568)
T ss_pred ceeEeeCCCeEEEEEEcCCCC------------ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCe
Confidence 345666767778889887655 5778999998888888899999999999999996 789999999999
Q ss_pred EEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcE-EEEecccCeE-------------EeeeCCE
Q 043942 106 LSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY-LVTGCVDGKV-------------DGHIDAI 170 (216)
Q Consensus 106 i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~~i-------------~~~~~~i 170 (216)
|++||+.++.. ...+. .......+|...|.+++|+|++.. +++++.|+.+ ..|...|
T Consensus 99 IrIWDi~t~~~~~~~i~--------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V 170 (568)
T PTZ00420 99 IRVWEIPHNDESVKEIK--------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKL 170 (568)
T ss_pred EEEEECCCCCccccccc--------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcE
Confidence 99999986432 11100 001112238899999999999875 5688999988 2355789
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 171 QSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
.+++|+|+|++|++++.|+.|++||+++++....+..|.
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999999999999999999999999988777666654
No 100
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.3e-22 Score=135.80 Aligned_cols=178 Identities=19% Similarity=0.304 Sum_probs=145.2
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEEeCCCCcc--------------cCcEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTVEGPRGGI--------------EDSTV 64 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~--------------~~~~v 64 (216)
+++|+.++.+++|.+.|+.++|+.+...+++|+.|.++++||.++. ++++.+......+ .||++
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTV 167 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcE
Confidence 4789999999999999999999999999999999999999999875 5555554433333 89999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC--e
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG--V 142 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v 142 (216)
+.||++.|+...-+-+ .+|+++.|+++++..+.++.|+++++.|-.+|+.+..+.. |... -
T Consensus 168 RtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG---------------hkn~eyk 230 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG---------------HKNMEYK 230 (307)
T ss_pred EEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc---------------cccceee
Confidence 9999999987665543 5799999999999999999999999999999999988886 4433 3
Q ss_pred EEEEeCCCCcEEEEecccCeE--------------EeeeCC-EEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV--------------DGHIDA-IQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~-i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
...+++....++++|++||.+ ..+... |.++.++|.-.-|+++. ++.+..|--
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-CCceeceee
Confidence 456777778899999999998 233333 78999999877777665 455566643
No 101
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.7e-23 Score=159.45 Aligned_cols=180 Identities=21% Similarity=0.338 Sum_probs=146.1
Q ss_pred CceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVW 65 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~ 65 (216)
.+.+..|..|...++++.|++. -.+|++||.||.|++||++..+...++.+....+ ..|.+.
T Consensus 123 nk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lq 202 (839)
T KOG0269|consen 123 NKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQ 202 (839)
T ss_pred chhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEE
Confidence 3455678899999999999995 4789999999999999999988777777655544 899999
Q ss_pred EEECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee--EEeecccccccccceEEEeeeecCe
Q 043942 66 MWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF--HAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 66 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
+||++. .++...+.+|.++|.|+.|+|++.+||||++|+.|++||+.+++.. .++. ...++
T Consensus 203 lWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn----------------Tiapv 266 (839)
T KOG0269|consen 203 LWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN----------------TIAPV 266 (839)
T ss_pred EeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe----------------eccee
Confidence 999995 4667888999999999999999999999999999999999876543 3333 56789
Q ss_pred EEEEeCCCCcE-EEEecc--cCeE---------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccc
Q 043942 143 TCLSWPGTSKY-LVTGCV--DGKV---------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 143 ~~~~~~~~~~~-l~~~~~--~~~i---------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
.+++|-|..++ |++++. |-.| ..|...++.++|.. |...+.+++.|++|..-.+++.
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 99999997664 565554 3333 78889999999965 4567889999999876655543
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.8e-22 Score=145.35 Aligned_cols=172 Identities=19% Similarity=0.338 Sum_probs=141.0
Q ss_pred ccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCc----------eEEEEeCCCCcc-----------------cCcE
Q 043942 12 GHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRN----------LQCTVEGPRGGI-----------------EDST 63 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~----------~~~~~~~~~~~~-----------------~~~~ 63 (216)
.|.+.|+.+.+-|+. ..+|+.+..+.|.|||...-. .-..+.+|.... .|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 599999999999965 577788889999999986532 112566666521 8999
Q ss_pred EEEEECCCc-------ceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCC--CceeEEeecccccccccceE
Q 043942 64 VWMWNADRG-------AYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKG--GENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 64 v~i~d~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~ 133 (216)
|++||++.. .+...+.+|...|..++|++ +..++++++.|+.+.+||+++ .+.......
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a----------- 270 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA----------- 270 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-----------
Confidence 999999743 23456789999999999999 556889999999999999995 344444444
Q ss_pred EEeeeecCeEEEEeCC-CCcEEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEc
Q 043942 134 ICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEI 196 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~ 196 (216)
|..++.+++|+| ++..||+|+.|+++ .+|...|.++.|+|+. ..|++++.|+.+.|||+
T Consensus 271 ----h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 271 ----HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred ----cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 999999999999 55678899999998 7899999999999975 67889999999999999
Q ss_pred cc
Q 043942 197 AE 198 (216)
Q Consensus 197 ~~ 198 (216)
..
T Consensus 347 s~ 348 (422)
T KOG0264|consen 347 SR 348 (422)
T ss_pred cc
Confidence 76
No 103
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.2e-22 Score=137.79 Aligned_cols=173 Identities=21% Similarity=0.322 Sum_probs=145.4
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc------------------cCcEEEEEE
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI------------------EDSTVWMWN 68 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~------------------~~~~v~i~d 68 (216)
-..|.+.|.++...--|++||||+.|++|+|+..++. +.+.++.+|.+++ .|+.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3479999999999999999999999999999999765 5678899999887 899999999
Q ss_pred CCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCC-ce--eEEeecccccccccceEEEeeeecC
Q 043942 69 ADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGG-EN--FHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 69 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
-+.++ .......|...|++++|.|. |-.|++++.||.|.+.+.++. .. ...... |.-.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a---------------H~~G 151 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA---------------HEIG 151 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc---------------cccc
Confidence 88774 34556789999999999995 568899999999999998854 11 122222 8889
Q ss_pred eEEEEeCCC---C-----------cEEEEecccCeE----------------EeeeCCEEEEEEecCC----CeEEEEeC
Q 043942 142 VTCLSWPGT---S-----------KYLVTGCVDGKV----------------DGHIDAIQSLSVSAIR----ESLVSVSV 187 (216)
Q Consensus 142 v~~~~~~~~---~-----------~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~----~~l~s~~~ 187 (216)
+++++|.|. | +.|++|+.|..+ .+|...|..++|.|.- .+|++|++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 999999885 4 459999999988 7899999999999964 58999999
Q ss_pred CCcEEEEEcc
Q 043942 188 DGTARVFEIA 197 (216)
Q Consensus 188 d~~v~vw~~~ 197 (216)
||++.||-..
T Consensus 232 Dg~viIwt~~ 241 (299)
T KOG1332|consen 232 DGTVIIWTKD 241 (299)
T ss_pred CCcEEEEEec
Confidence 9999999876
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.9e-22 Score=151.33 Aligned_cols=144 Identities=22% Similarity=0.368 Sum_probs=125.6
Q ss_pred ceeEEeeccccceEEEEE-ccCCCEEEEEcCCCcEEEEECCCCc--eEEEEe---------CCCCcc-------------
Q 043942 5 DWASEILGHKDSFSSLAF-STDGQLLASGGFHGLVQNRDTSSRN--LQCTVE---------GPRGGI------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~---------~~~~~~------------- 59 (216)
-+..+++.|++-|.|+++ .++..++|+|+-|+.|.+||++++. .+..+. ++..++
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 356678899999999999 7888999999999999999999772 222221 222222
Q ss_pred ---cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 60 ---EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 60 ---~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
.++.+++||.++.+.+..+++|+..|.++..++||+.+++++.||+|++||+...+++.++..
T Consensus 188 sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-------------- 253 (735)
T KOG0308|consen 188 SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-------------- 253 (735)
T ss_pred ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe--------------
Confidence 678899999999999999999999999999999999999999999999999999999998887
Q ss_pred eeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 137 SLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
|...|.++.-+|+-.++++|+.||.|
T Consensus 254 -H~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 254 -HKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred -ccCceEEEeeCCCcceEEecCCCCcE
Confidence 88889999999999999999999988
No 105
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=9.9e-22 Score=151.10 Aligned_cols=175 Identities=23% Similarity=0.365 Sum_probs=148.0
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------cCcEEEEEECCCc
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------EDSTVWMWNADRG 72 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------~~~~v~i~d~~~~ 72 (216)
+....+.+++.+|+|++||+|..-|+++||++.+.+....++.|+..+ .|+-|++||....
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 345679999999999999999999999999999999988888888876 7888999997532
Q ss_pred -ceeeeeeccC-------------------------------------------------CCeeEEEEcCCCcEEEEecC
Q 043942 73 -AYLNMFSGHG-------------------------------------------------SGLTCGDFTTDGKTICTGSD 102 (216)
Q Consensus 73 -~~~~~~~~~~-------------------------------------------------~~v~~~~~~~~~~~l~t~~~ 102 (216)
.+++++.+|. ..+..++..|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 2222222222 24566777777788999999
Q ss_pred CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeC
Q 043942 103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHID 168 (216)
Q Consensus 103 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~ 168 (216)
|+.|++||+.++++.+.|+... ++.+....+...|.|.|+++.+.|..+ .+|..
T Consensus 617 Drnirif~i~sgKq~k~FKgs~------------~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE 684 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSR------------DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE 684 (1080)
T ss_pred ccceEEEeccccceeeeecccc------------cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch
Confidence 9999999999999999998743 266788899999999999999999988 79999
Q ss_pred CEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 685 ~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 685 AVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred heeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999753
No 106
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1e-22 Score=157.06 Aligned_cols=147 Identities=16% Similarity=0.283 Sum_probs=118.9
Q ss_pred eEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CC
Q 043942 17 FSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DG 94 (216)
Q Consensus 17 v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~ 94 (216)
+..+.|+. +.++|||++..|.|.+||+...- ..+.+..+..|...++++.|++ ..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------------------rnk~l~~f~EH~Rs~~~ldfh~tep 146 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------------------RNKLLTVFNEHERSANKLDFHSTEP 146 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccc-----------------------cchhhhHhhhhccceeeeeeccCCc
Confidence 34456654 44677777766666555554210 1345567888999999999998 45
Q ss_pred cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE----------
Q 043942 95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV---------- 163 (216)
Q Consensus 95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i---------- 163 (216)
.+|++|+.||.|++||++..+...++.. ....|+.+.|+| .+.+++++.+.|.+
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~~~---------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r 211 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTFRS---------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR 211 (839)
T ss_pred cEEEecCCCceEEEEeeecccccccccc---------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchh
Confidence 6889999999999999999998888876 678899999998 56788889999988
Q ss_pred -----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 164 -----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 164 -----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.+|.++|.++.|+|++.+|||||.|++|+||+..+.+.
T Consensus 212 ~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 212 CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence 79999999999999999999999999999999986543
No 107
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.1e-21 Score=139.69 Aligned_cols=192 Identities=18% Similarity=0.203 Sum_probs=155.6
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Ccc----------------cCcEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GGI----------------EDSTVWMW 67 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~----------------~~~~v~i~ 67 (216)
++.+++.+|..+|..+.||||.++|++|+.|..+.+||..+|+....+.... ... .|+++..|
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMW 339 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEe
Confidence 4678899999999999999999999999999999999999998877765441 111 88999999
Q ss_pred ECCCcceeeeeeccC-CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 68 NADRGAYLNMFSGHG-SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 68 d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
|+.. .....+++.. ..|.+++..+||+++++.+.|..|++++..+......+. ...+|++++
T Consensus 340 dlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis----------------e~~~its~~ 402 (519)
T KOG0293|consen 340 DLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS----------------EEQPITSFS 402 (519)
T ss_pred cCCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc----------------ccCceeEEE
Confidence 9873 3444555443 468999999999999999999999999988765554444 568899999
Q ss_pred eCCCCcEEEEecccCeE--------------EeeeC--CEEEEEEec-CCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 147 WPGTSKYLVTGCVDGKV--------------DGHID--AIQSLSVSA-IRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i--------------~~~~~--~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
.+.+++++++--.+..+ .+|.. .+..-||-- +..++++||+|+.|+||+..+++++..+++|+
T Consensus 403 iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc
Confidence 99999999887777766 44433 455556654 45899999999999999999999999999988
Q ss_pred eeEE
Q 043942 210 FKLF 213 (216)
Q Consensus 210 ~~~~ 213 (216)
..+-
T Consensus 483 ~~vN 486 (519)
T KOG0293|consen 483 KTVN 486 (519)
T ss_pred ceee
Confidence 6543
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=9.8e-21 Score=147.35 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=111.6
Q ss_pred cCcEEEEEECCCcceeeee---eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 60 EDSTVWMWNADRGAYLNMF---SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
+.|.|-+|+++.|.....+ ..|.++|+.++....++.+++++.+|.+++||+.+...+..+.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~--------------- 532 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR--------------- 532 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec---------------
Confidence 6788888888888777777 4799999999999999999999999999999999888777776
Q ss_pred eeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 137 SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
...++.++..+.....++.+.+|-.| .+|...|++++|||||++|++++.|++|++||+.++..+
T Consensus 533 -l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 533 -LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred -cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 45677888888877788887777666 789999999999999999999999999999999998876
Q ss_pred e
Q 043942 203 T 203 (216)
Q Consensus 203 ~ 203 (216)
-
T Consensus 612 D 612 (910)
T KOG1539|consen 612 D 612 (910)
T ss_pred e
Confidence 4
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.6e-21 Score=136.24 Aligned_cols=178 Identities=17% Similarity=0.289 Sum_probs=152.5
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
++..|++|.+.|.+..|-..|+.+++++.|.+..+||.++++.+..+.+|.... .|.+.++||.
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence 567889999999999999999999999999999999999999999999988765 8999999999
Q ss_pred CCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 70 DRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 70 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+.. ..+..|++|...|+++.|..+ ..+++|++|.+|++||+++.+. +.++. ...+++.++.
T Consensus 344 ReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR----------------tdS~~NRvav 406 (481)
T KOG0300|consen 344 REAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR----------------TDSPANRVAV 406 (481)
T ss_pred hhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee----------------cCCccceeEe
Confidence 853 456789999999999999975 4688999999999999998754 55665 5677888888
Q ss_pred CCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCC--CeEEEEeCCCcEEEEEccccc
Q 043942 148 PGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIR--ESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~--~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+..+..|+.--++..+ ++|..-|.+++|..+. .-|++|+.|..+.-|++....
T Consensus 407 s~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 407 SKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 8877788877777666 7899999999997654 357899999999999987643
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=1.3e-21 Score=145.22 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=130.3
Q ss_pred EeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEE-EeCCCC---------------------cccCcEEE
Q 043942 9 EILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCT-VEGPRG---------------------GIEDSTVW 65 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~---------------------~~~~~~v~ 65 (216)
.-+||...++|-+|+|+. +.|+|++.||++|+||++..+.... +..... +..||.|.
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 346899999999999954 6899999999999999987643322 211110 11899999
Q ss_pred EEECCCc--ce-eeeeeccCC--CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeee
Q 043942 66 MWNADRG--AY-LNMFSGHGS--GLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 66 i~d~~~~--~~-~~~~~~~~~--~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
+|+.... ++ ...-.+|.. .|+|++|+++|++|++-+.|+++++||+++.+. +.....-. ..
T Consensus 343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~-------------t~ 409 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP-------------TP 409 (641)
T ss_pred eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC-------------cc
Confidence 9997532 22 223346776 899999999999999999999999999997653 33333211 34
Q ss_pred cCeEEEEeCCCCcEEEEecc------cCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 140 DGVTCLSWPGTSKYLVTGCV------DGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~------~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
.+-+.++|+|+.++|++|.. .|.+ .-....|..+.|+|.-+.|+.++.||+++||=
T Consensus 410 ~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 410 FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 56678999999999999864 2323 22256789999999988899999999998863
No 111
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=7.6e-21 Score=147.86 Aligned_cols=188 Identities=16% Similarity=0.152 Sum_probs=143.9
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
.+++..++||.+.|.++.||.+ ++|++++.|.+||+|++...++++.+.-...-- -|+.++||
T Consensus 359 ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 359 EKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLW 437 (712)
T ss_pred ccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEe
Confidence 3678889999999999999986 589999999999999999999988876433211 79999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
++...+.+.-.. -..-|++++|.|||+..+.|+.+|.+++|++...+....+........ ...+. .|+.+.|
T Consensus 438 sI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K------k~~~~-rITG~Q~ 509 (712)
T KOG0283|consen 438 SISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK------KKQGK-RITGLQF 509 (712)
T ss_pred ecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc------cccCc-eeeeeEe
Confidence 999776655444 447899999999999999999999999999998777665543110000 00023 7999999
Q ss_pred CCCC-cEEEEecccCeE--------------Eee--eCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 148 PGTS-KYLVTGCVDGKV--------------DGH--IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 148 ~~~~-~~l~~~~~~~~i--------------~~~--~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.|.. ..+++.+.|..| .++ ...-....|+.||++|+++++|..|++|++....
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 8744 346666677666 111 1233567899999999999999999999985543
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=5e-21 Score=146.26 Aligned_cols=174 Identities=22% Similarity=0.346 Sum_probs=147.1
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWM 66 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i 66 (216)
.++++..+|++|+..|.|++...++. +++||.|.++++|-.... ...+++|...+ .|.+|++
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l--~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL--VYSLQGHTASVWAVASLPENTYVTGSADKTIKL 165 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh--hcccCCcchheeeeeecCCCcEEeccCcceeee
Confidence 35678899999999999999888887 999999999999986543 33467777655 8999999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
|.- ++.++++.+|...|+.+++-+++ .+++++.||.|+.|++ +|..+.+... |...++++.
T Consensus 166 Wk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g---------------htn~vYsis 226 (745)
T KOG0301|consen 166 WKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG---------------HTNFVYSIS 226 (745)
T ss_pred ccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec---------------cceEEEEEE
Confidence 987 67888999999999999999764 5788999999999999 5888888877 999999999
Q ss_pred eCCCCcEEEEecccCeE-----------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 147 WPGTSKYLVTGCVDGKV-----------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i-----------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
...++..++++++|+.+ ..|. ..|+++.+-++|. +++|+.||.||||....
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 88888999999999998 2232 3788888888888 56677799999998764
No 113
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.2e-22 Score=155.77 Aligned_cols=167 Identities=21% Similarity=0.364 Sum_probs=150.6
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
+..|.+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+ .|..+++||++
T Consensus 63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 44578999999999999999999999999999999999998888777766544 78999999999
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
..-+...+.+|...+.+++|+|+|++++.++.|..+++||...|+...+|+. |...+..+.|+|.
T Consensus 143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~---------------~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS---------------HEGKVQSLEFHPL 207 (825)
T ss_pred ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc---------------ccccccccccCch
Confidence 8889999999999999999999999999999999999999999999999987 9999999999999
Q ss_pred CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942 151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d 188 (216)
.-.++.|+.|+.+ ......|.+..|+|+++.+.+|.++
T Consensus 208 e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 208 EVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred hhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999988 2235689999999999988877554
No 114
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.9e-20 Score=130.03 Aligned_cols=186 Identities=23% Similarity=0.331 Sum_probs=138.1
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc------------------cCcEEEEEEC
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI------------------EDSTVWMWNA 69 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~------------------~~~~v~i~d~ 69 (216)
+|.+-|.++.|.+.|+.+|||+.|++|+|||.++. .+....+.|.+.+ .|+++.||.=
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 79999999999999999999999999999997543 4555667777665 8999999985
Q ss_pred CC---------cceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCcee------EEeec----------
Q 043942 70 DR---------GAYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENF------HAIRR---------- 122 (216)
Q Consensus 70 ~~---------~~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~------~~~~~---------- 122 (216)
.. -....++......|+++.|.|. |-.+++++.||.+++|+.-+...+ .++..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 21 1233456667789999999994 668899999999999987643222 11110
Q ss_pred -------ccc------------c------------ccccc--e---EEEeeeecCeEEEEeCCCC----cEEEEecccCe
Q 043942 123 -------SSL------------E------------FSLNY--W---MICTSLYDGVTCLSWPGTS----KYLVTGCVDGK 162 (216)
Q Consensus 123 -------~~~------------~------------~~~~~--~---~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~ 162 (216)
... + +.... + ....++.++|++++|.|+- ..|++++.||.
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv 250 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGV 250 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcE
Confidence 000 0 00000 0 0112378899999999853 46889999972
Q ss_pred E---------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 163 V---------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 163 i---------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
- ..|.+.|..+.|+-.|..|++.|.||+||+|...
T Consensus 251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 1 6788999999999999999999999999999753
No 115
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=3e-20 Score=133.93 Aligned_cols=176 Identities=17% Similarity=0.234 Sum_probs=138.4
Q ss_pred EeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc-----------------cCcE
Q 043942 9 EILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI-----------------EDST 63 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~-----------------~~~~ 63 (216)
.+.||.++|..++|+| +.+.+|+||.|.+|+||++..+ +.+..+.+|...+ .|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4568999999999999 5678999999999999998765 4566777777655 8999
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee-cCe
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY-DGV 142 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 142 (216)
|.+||+.++..+.++. |...|.++.|+.||.+++|++.|+.|++||.++++.+.+-.. |. ..-
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~---------------heG~k~ 219 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA---------------HEGAKP 219 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccc---------------ccCCCc
Confidence 9999999999988888 999999999999999999999999999999999998887754 32 233
Q ss_pred EEEEeCCCCcEEEEecc---cCeE----------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEccccc
Q 043942 143 TCLSWPGTSKYLVTGCV---DGKV----------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFR 200 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~---~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~ 200 (216)
..+.|-.+|.++.+|.. +..+ ....+.|.---|+|+...+..++ .|+.||-|.+.+..
T Consensus 220 ~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 220 ARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 44556666664444432 2222 22345566666788888777655 59999999987654
No 116
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2e-21 Score=146.46 Aligned_cols=174 Identities=18% Similarity=0.264 Sum_probs=144.2
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc------------c--------------
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG------------I-------------- 59 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------~-------------- 59 (216)
+...+++|.+.|.+++..|.|.+|++|+.||+|+||.+.++.++.++...... +
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34567899999999999999999999999999999999999988776542210 0
Q ss_pred --------------------------------------------------------------------------------
Q 043942 60 -------------------------------------------------------------------------------- 59 (216)
Q Consensus 60 -------------------------------------------------------------------------------- 59 (216)
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence
Q ss_pred ---------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeE
Q 043942 60 ---------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATL 106 (216)
Q Consensus 60 ---------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i 106 (216)
....|++||+.....+..+......|..++.+|.|..|+.++.|+.+
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~ 631 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM 631 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence 45556666666555555555455678999999999999999999999
Q ss_pred EEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------------
Q 043942 107 SIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------------- 163 (216)
Q Consensus 107 ~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------------- 163 (216)
..+|+.-. +..+.+.. |...++.++|++.-.++++|+.||.+
T Consensus 632 ~WfDldlsskPyk~lr~---------------H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRL---------------HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred EEEEcccCcchhHHhhh---------------hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 99999854 45556665 89999999999999999999999987
Q ss_pred -EeeeCC----EEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 164 -DGHIDA----IQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 164 -~~~~~~----i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
.+|... |..+.|+|...+|++++.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 455544 8999999999999999999999998
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=8.7e-21 Score=132.17 Aligned_cols=152 Identities=20% Similarity=0.375 Sum_probs=119.0
Q ss_pred eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-------c-----------cCcEEEEEECCC
Q 043942 11 LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-------I-----------EDSTVWMWNADR 71 (216)
Q Consensus 11 ~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-------~-----------~~~~v~i~d~~~ 71 (216)
.+|+..|.++.|-| |.-.|.+++.|.+++|||.++.+..-.+..+... + .+-.|++.|+..
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC
Confidence 36888999999999 6678999999999999999998877666543321 1 788999999999
Q ss_pred cceeeeeeccCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
|...+.+.+|...|.++.|+|...+ |++|+.||.|++||++.- .+...+........+ .......|.+.++.++|+.
T Consensus 178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p-~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPP-ILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCc-cccccccccceeeeeeecc
Confidence 9999999999999999999997765 679999999999999865 333333321111000 0112234888999999999
Q ss_pred CCcEEEEecccCeE
Q 043942 150 TSKYLVTGCVDGKV 163 (216)
Q Consensus 150 ~~~~l~~~~~~~~i 163 (216)
++.++++++.|..+
T Consensus 257 d~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 257 DARYLASCGTDDRI 270 (397)
T ss_pred cchhhhhccCccce
Confidence 99999999888877
No 118
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=5.7e-21 Score=136.78 Aligned_cols=157 Identities=19% Similarity=0.284 Sum_probs=127.3
Q ss_pred CceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccC
Q 043942 4 GDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHG 82 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 82 (216)
.+++.++.+|...=+.++|||-. ..|+||.--+.|++|...++. |-+. ...+.+|+
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~-------------------W~vd----~~Pf~gH~ 257 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS-------------------WKVD----QRPFTGHT 257 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCc-------------------eeec----Cccccccc
Confidence 46788999999999999999932 358888877788888776543 2221 12356799
Q ss_pred CCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEE--eecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 83 SGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHA--IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 83 ~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
..|-.+.|+|.. ..+++|+.||+|++||++.+..... .+. |...|+.+.|+.+-.+|++|+.
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA---------------h~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA---------------HNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec---------------cCCceeeEEccCCcceeeecCC
Confidence 999999999954 5789999999999999998843222 233 8899999999998889999999
Q ss_pred cCeE-----------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccc
Q 043942 160 DGKV-----------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 160 ~~~i-----------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~ 198 (216)
||.+ .-|..+|+++.|+|.. ..|+++|.|..|.+||+.-
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9988 6789999999999965 5677888999999999864
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=1.1e-18 Score=128.85 Aligned_cols=204 Identities=13% Similarity=0.083 Sum_probs=139.4
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
++++.+..+..|. .+.+++|+|+++.+ ++++.++.|++||..+++....+..+.... .++.+
T Consensus 19 ~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 19 ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeE
Confidence 4677888887664 46789999999876 567788999999999988776654432211 57899
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC-eEEEEeCCCCceeEEeecc----cccccccceEE--Eee
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-TLSIWNPKGGENFHAIRRS----SLEFSLNYWMI--CTS 137 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~--~~~ 137 (216)
++||+++++.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++++........ ...+.+....+ ...
T Consensus 98 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 98 TVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC
Confidence 9999998877776653 34578899999999999888765 5777898877654432210 01111111100 000
Q ss_pred ---------------------e-------ecCeEEEEeCCCCcEEEEe-cccCeE-------------EeeeCCEEEEEE
Q 043942 138 ---------------------L-------YDGVTCLSWPGTSKYLVTG-CVDGKV-------------DGHIDAIQSLSV 175 (216)
Q Consensus 138 ---------------------~-------~~~v~~~~~~~~~~~l~~~-~~~~~i-------------~~~~~~i~~~~~ 175 (216)
+ ......++|+|++++++++ +.++.+ ..+...+.+++|
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAF 256 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEE
Confidence 0 0012357789999975543 334434 234567889999
Q ss_pred ecCCCeEEEE-eCCCcEEEEEcccccceeecCC
Q 043942 176 SAIRESLVSV-SVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 176 ~~~~~~l~s~-~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
+|+|++|+++ +.++.|++||+.+++....++.
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 9999999876 4689999999999887665543
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=4.4e-20 Score=141.20 Aligned_cols=191 Identities=23% Similarity=0.340 Sum_probs=159.5
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc------------------cCc
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI------------------EDS 62 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~------------------~~~ 62 (216)
.-++.+.+.+|+..|..++..+. ..++++|.||++++|+-...+.+. .++.|.+.+ .|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 45677899999999998887764 489999999999999986665443 222222211 789
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
++.+|...+..++..+++|...|.+++...++. +++||.|.++++|... +....+.+ |+..|
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~g---------------H~asV 143 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQG---------------HTASV 143 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCC---------------cchhe
Confidence 999999999999999999999999999887776 9999999999999754 44555665 99999
Q ss_pred EEEEeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF 210 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~ 210 (216)
.++..-|++ .+++|+.|..| .+|..-|..+++-+++. +++|+.||.|+.|++ +++.+.+.-.|..
T Consensus 144 WAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn 220 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTN 220 (745)
T ss_pred eeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccce
Confidence 999998887 78899999988 78999999999987755 788999999999999 7888888888887
Q ss_pred eEEEe
Q 043942 211 KLFFL 215 (216)
Q Consensus 211 ~~~~~ 215 (216)
.+|.+
T Consensus 221 ~vYsi 225 (745)
T KOG0301|consen 221 FVYSI 225 (745)
T ss_pred EEEEE
Confidence 77764
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=5.7e-21 Score=141.64 Aligned_cols=165 Identities=20% Similarity=0.249 Sum_probs=144.3
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~ 78 (216)
-..+.++.+||.+..+++..||.|.|||+.+...++.+++|..+. -|++|+.||+++++.+...
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh 589 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH 589 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh
Confidence 346778899999999999999999999999999999999998876 7999999999999877654
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
. ....|.++.++|++.+++.|-..+.+.+...... ....+.. |...|.++.|.+.|+++++.+
T Consensus 590 d-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhl---------------heScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 590 D-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHL---------------HESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred h-hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecc---------------cccEEEEEEecccCceeeecC
Confidence 4 4578999999999999999999999999887643 3444444 889999999999999999999
Q ss_pred ccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 159 VDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 159 ~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
.|..+ ..-...|.++.+|.|.+|++||+.|++-.||.+
T Consensus 653 kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99887 334578999999999999999999999998875
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=3.1e-20 Score=135.91 Aligned_cols=181 Identities=20% Similarity=0.278 Sum_probs=154.9
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE-Ee-----------------CCCCcc---------
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT-VE-----------------GPRGGI--------- 59 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~-----------------~~~~~~--------- 59 (216)
.+.+..|.-+|.+++++|+.++.++++.+++|.-|+..+++.... ++ .|...+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 456778999999999999999999999999999999998864411 11 111111
Q ss_pred -------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccce
Q 043942 60 -------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW 132 (216)
Q Consensus 60 -------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+.+++.|+.+++|+++....+.++..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG---------- 284 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG---------- 284 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC----------
Confidence 788899999999999999999999999999998888999999999999999998888888877
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|++.|..+.....++.+-+|+.|+++ .++.+.+.+++|-.+ ..+++||.+|.|.+|++...
T Consensus 285 -----Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 285 -----HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred -----CccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 99999999988888888888899987 677789999999554 56899999999999999887
Q ss_pred ccee
Q 043942 200 RRAT 203 (216)
Q Consensus 200 ~~~~ 203 (216)
+++.
T Consensus 359 kplf 362 (479)
T KOG0299|consen 359 KPLF 362 (479)
T ss_pred Ccee
Confidence 7764
No 123
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=131.90 Aligned_cols=178 Identities=15% Similarity=0.231 Sum_probs=138.4
Q ss_pred ceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEE--EeCCCC------------cc-----cCcEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCT--VEGPRG------------GI-----EDSTV 64 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~------------~~-----~~~~v 64 (216)
..++.+.--..+|.+.+|.|+|+ .+++++.....+.||+.+.+..+. ..+... .. ..|.|
T Consensus 248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI 327 (514)
T ss_pred hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceE
Confidence 45566666678999999999998 899999999999999988754432 112111 11 77888
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
.+....+++.+..++ -.+.|..+.|+.+++.|+.++.+|.|.+||++....++.+.... .-.-+.
T Consensus 328 ~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G--------------~v~gts 392 (514)
T KOG2055|consen 328 HLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG--------------SVHGTS 392 (514)
T ss_pred Eeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC--------------ccceee
Confidence 888888888888887 56889999999999999999999999999999998888886421 112345
Q ss_pred EEeCCCCcEEEEecccCeE-------------------------------------------------------------
Q 043942 145 LSWPGTSKYLVTGCVDGKV------------------------------------------------------------- 163 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i------------------------------------------------------------- 163 (216)
++.++++.++|+|+..|.+
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVF 472 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVF 472 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeee
Confidence 5666677777777777666
Q ss_pred ------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 164 ------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 164 ------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
...-+.|++++|+|.+-+|+.|..+|.+.+|.+.
T Consensus 473 sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1223578999999999999999999999999875
No 124
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=2.7e-20 Score=142.37 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=100.1
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
++++.+|...|.+++.+|+++++|+++.. ..|++|+..+...++.+.. |.-.|+.++|+|
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~---------------HsLTVT~l~FSp 582 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG---------------HSLTVTRLAFSP 582 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc---------------cceEEEEEEECC
Confidence 34566899999999999999999999865 3499999999888888887 999999999999
Q ss_pred CCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 150 TSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 150 ~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|+++|++.+.|+.+ ..|..-|.++.|+|++.+++|+|.|++|++|.....
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 99999999999988 678888999999999999999999999999998876
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=141.12 Aligned_cols=145 Identities=22% Similarity=0.331 Sum_probs=127.1
Q ss_pred CCCCceeEEe---eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCc
Q 043942 1 INQGDWASEI---LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDS 62 (216)
Q Consensus 1 l~~g~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~ 62 (216)
+++|-....+ .+|+++|..++....++.+++++.+|.++.||......+..++...... .+-
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 3556666667 4899999999999999999999999999999999998777776544322 888
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
.|+++|..+.+.++.+.+|.+.|++++|+|||++|++++.|++|++||+-++..+-.+. ...+.
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----------------vd~~~ 620 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----------------VDSPC 620 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----------------cCCcc
Confidence 99999999999999999999999999999999999999999999999999999888776 56778
Q ss_pred EEEEeCCCCcEEEEecccC
Q 043942 143 TCLSWPGTSKYLVTGCVDG 161 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~ 161 (216)
+.+.|+|+|.+||+...|+
T Consensus 621 ~sls~SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 621 TSLSFSPNGDFLATVHVDQ 639 (910)
T ss_pred eeeEECCCCCEEEEEEecC
Confidence 8899999999999887763
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=6.2e-19 Score=123.12 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=128.1
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCC
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADR 71 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~ 71 (216)
...|.++|.+++|+.||..+++|+.|+.+++||+.+++ ...+..|..++ .|.++++||++.
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~ 146 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS 146 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCC
Confidence 34689999999999999999999999999999999994 44555555544 899999999999
Q ss_pred cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccc----------------------
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL---------------------- 129 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---------------------- 129 (216)
..++.++. -.+.+.++..- ...++++..++.|.+|+++++.........++..+.
T Consensus 147 ~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 147 SNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred CCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence 99998887 44667777653 457888889999999999765322111111110000
Q ss_pred ---------cceEEEeeee---------cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEec
Q 043942 130 ---------NYWMICTSLY---------DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSA 177 (216)
Q Consensus 130 ---------~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~ 177 (216)
..-+.+.-|. -.|++++|+|.-..|++++.||.+ ..|..+|++++|+.
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence 0001111122 247789999999999999999998 67889999999999
Q ss_pred CCCeEEEE
Q 043942 178 IRESLVSV 185 (216)
Q Consensus 178 ~~~~l~s~ 185 (216)
+|.+++-+
T Consensus 304 ~G~ifaYA 311 (347)
T KOG0647|consen 304 NGSIFAYA 311 (347)
T ss_pred CCCEEEEE
Confidence 99988744
No 127
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=126.50 Aligned_cols=146 Identities=20% Similarity=0.250 Sum_probs=111.0
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT 96 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 96 (216)
-.|+.|++.|.+||.|..||.|.|||+. |...-+.+.+|..+|++++|+++|+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~--------------------------T~~iar~lsaH~~pi~sl~WS~dgr~ 79 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD--------------------------TFRIARMLSAHVRPITSLCWSRDGRK 79 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc--------------------------ccchhhhhhccccceeEEEecCCCCE
Confidence 6799999999999999977776666654 44445667899999999999999999
Q ss_pred EEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc--EEEEecccCeE-----------
Q 043942 97 ICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK--YLVTGCVDGKV----------- 163 (216)
Q Consensus 97 l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~~~i----------- 163 (216)
|+|++.|..|.+||+..|.+++.+. ...+|....|+|... .+++--....+
T Consensus 80 LltsS~D~si~lwDl~~gs~l~rir----------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~ 143 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSPLKRIR----------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV 143 (405)
T ss_pred eeeecCCceeEEEeccCCCceeEEE----------------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee
Confidence 9999999999999999999999887 566777777776332 22222221111
Q ss_pred -----Ee-eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 164 -----DG-HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 164 -----~~-~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
.+ ....-.+..|++.|+++++|...|.+.++|..+.++...
T Consensus 144 Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas 190 (405)
T KOG1273|consen 144 LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVAS 190 (405)
T ss_pred ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeee
Confidence 00 011112236889999999999999999999998877654
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.1e-19 Score=128.36 Aligned_cols=168 Identities=20% Similarity=0.299 Sum_probs=131.9
Q ss_pred eEEEEEcc-------CCCEEEEEcCCCcEEEEECCCCceE---EEE------------------eCCCCcc---------
Q 043942 17 FSSLAFST-------DGQLLASGGFHGLVQNRDTSSRNLQ---CTV------------------EGPRGGI--------- 59 (216)
Q Consensus 17 v~~~~~s~-------~~~~l~s~~~d~~v~vwd~~~~~~~---~~~------------------~~~~~~~--------- 59 (216)
..|++|.. .|+++|.|..|..|.|||+.-...+ .++ .+|...+
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 35666643 3579999999999999998643211 111 1233222
Q ss_pred --------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccc
Q 043942 60 --------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSL 129 (216)
Q Consensus 60 --------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~ 129 (216)
.|.+|++||+.++++..++..|...|.+++|+| ....|++|+.|+++.+.|.+.... -..+.
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-------- 327 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-------- 327 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--------
Confidence 899999999999999999999999999999999 567899999999999999995322 22232
Q ss_pred cceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEE
Q 043942 130 NYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTAR 192 (216)
Q Consensus 130 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~ 192 (216)
..+.|..++|.|... .++++..||.+ .+|..+|.++++++.- .++++++.|+.|+
T Consensus 328 --------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 328 --------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred --------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEE
Confidence 567899999998664 57777888988 7899999999998865 4678899999999
Q ss_pred EEEccccc
Q 043942 193 VFEIAEFR 200 (216)
Q Consensus 193 vw~~~~~~ 200 (216)
+|++....
T Consensus 400 lw~~~~~~ 407 (463)
T KOG0270|consen 400 LWKFDVDS 407 (463)
T ss_pred EEeecCCC
Confidence 99987644
No 129
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=4.5e-19 Score=123.29 Aligned_cols=178 Identities=17% Similarity=0.249 Sum_probs=140.2
Q ss_pred ceeEEee-ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-EEEEeCCCCcc----------------------c
Q 043942 5 DWASEIL-GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-QCTVEGPRGGI----------------------E 60 (216)
Q Consensus 5 ~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~----------------------~ 60 (216)
+++..|. .+-+.|.|+.|.|++..+|+-. |..|.+|++..+.. ...+....... .
T Consensus 113 E~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 113 ECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred hHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 3444554 4567899999999999999887 88999999988755 44433221111 8
Q ss_pred CcEEEEEECCCcceeeeee-ccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEee
Q 043942 61 DSTVWMWNADRGAYLNMFS-GHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
++++..||+++..+...++ +|...|..+.|+|+-+ +|++|+.|+.|++||.+..+ +++++..
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~--------------- 256 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG--------------- 256 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC---------------
Confidence 9999999999877666554 6888899999999765 67899999999999999654 5677776
Q ss_pred eecCeEEEEeCCC-CcEEEEecccCeE-------------------------------------------EeeeCCEEEE
Q 043942 138 LYDGVTCLSWPGT-SKYLVTGCVDGKV-------------------------------------------DGHIDAIQSL 173 (216)
Q Consensus 138 ~~~~v~~~~~~~~-~~~l~~~~~~~~i-------------------------------------------~~~~~~i~~~ 173 (216)
|..-|.++.|+|. .+++++++.|..+ ..|...|+++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 8999999999984 4677888888877 6788999999
Q ss_pred EEecCCCe-EEEEeCCCcEEEEEccc
Q 043942 174 SVSAIRES-LVSVSVDGTARVFEIAE 198 (216)
Q Consensus 174 ~~~~~~~~-l~s~~~d~~v~vw~~~~ 198 (216)
+||.-..+ +|+-+.||.+.|=.+..
T Consensus 337 aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 337 AWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeccCCCeeEEEeccCceEEeecCCh
Confidence 99987665 56778999998866543
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.3e-19 Score=128.64 Aligned_cols=143 Identities=21% Similarity=0.331 Sum_probs=111.3
Q ss_pred EeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942 9 EILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC 87 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~ 87 (216)
.+.+|...|-.++|||. ...|++||-||+|+|||++.+... ..+ ..++|.+.|+.
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-----------------------~~~-~~kAh~sDVNV 307 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-----------------------AAV-STKAHNSDVNV 307 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc-----------------------cee-EeeccCCceee
Confidence 46679999999999995 468999998888888887765321 122 23789999999
Q ss_pred EEEcCCCcEEEEecCCCeEEEEeCCC---CceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccCeE
Q 043942 88 GDFTTDGKTICTGSDNATLSIWNPKG---GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDGKV 163 (216)
Q Consensus 88 ~~~~~~~~~l~t~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~i 163 (216)
|.|+.+..+||+|+.||++++||+++ ++++..|+. |..+|+++.|+|. ...|++++.|..+
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~---------------Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY---------------HKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe---------------ccCCeeEEEeccccCceEEeccCCCcE
Confidence 99999888999999999999999986 456677776 9999999999984 5678888888877
Q ss_pred ------------------------------Eee--eCCEEEEEEecCC-CeEEEEeCCCc
Q 043942 164 ------------------------------DGH--IDAIQSLSVSAIR-ESLVSVSVDGT 190 (216)
Q Consensus 164 ------------------------------~~~--~~~i~~~~~~~~~-~~l~s~~~d~~ 190 (216)
..| ...+-.+.|+++- -++++.+.||-
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 223 2346677777753 36677777773
No 131
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.7e-19 Score=130.36 Aligned_cols=107 Identities=21% Similarity=0.378 Sum_probs=81.5
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCe
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGL 85 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v 85 (216)
.+..|..|...|+++.|+|+|++||+|+.+|.|.+|....-... .... + .+. +-+.......+.+|...+
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~-e-~~~-----~ke~w~v~k~lr~h~~di 126 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADT-E-ADL-----NKEKWVVKKVLRGHRDDI 126 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccc-h-hhh-----CccceEEEEEecccccch
Confidence 45677789999999999999999999999999999987641111 0000 0 000 001123345677899999
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
..++|+|++.++++++.|..+++||+..|+....+..
T Consensus 127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred hhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence 9999999999999999999999999999988776654
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=122.86 Aligned_cols=174 Identities=17% Similarity=0.225 Sum_probs=126.8
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC---Cc
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD---RG 72 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~---~~ 72 (216)
.|.-.|..+-....+.+|++++.|..|.+|++. |+.+..+......- .-..|++|.+- .|
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence 366677778888888999999999999999999 87777765432211 44557888863 22
Q ss_pred -----ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc----eeEEeecccccccccceEEEeeeecCeE
Q 043942 73 -----AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE----NFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 73 -----~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
..+..+++|...|..++|+++...++|.+.||++++||++-.. -...++..+. ..+. ......
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~-------pl~a-ag~~p~ 335 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA-------PLHA-AGSEPV 335 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc-------chhh-cCCCce
Confidence 3456788999999999999999999999999999999987321 1111111100 0001 223344
Q ss_pred EEEeCCCCcEEEEecc---------cCeE-----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 144 CLSWPGTSKYLVTGCV---------DGKV-----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~---------~~~i-----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
.+.++|+|..|+.+.. +|.. ..|...|++++|+++|+++++|+ |..+++..
T Consensus 336 RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 336 RLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 8888999988876533 2332 67899999999999999999997 78888875
No 133
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7e-19 Score=133.24 Aligned_cols=139 Identities=22% Similarity=0.342 Sum_probs=126.2
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------cCcEEEEEEC
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------EDSTVWMWNA 69 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------~~~~v~i~d~ 69 (216)
++++|...|..++|++|+++||+|+.|+.+.|||....+....+..|...+ .|++|++||.
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 378899999999999999999999999999999998888888888888766 8999999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
.++..+..+. ....|..|.|++..+.|+++. .+..|.+|+..+.+.+..+.. |...|..+++
T Consensus 376 ~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g---------------H~~RVl~la~ 439 (484)
T KOG0305|consen 376 NTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG---------------HTSRVLYLAL 439 (484)
T ss_pred CCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC---------------CcceeEEEEE
Confidence 9999988876 567899999999987777654 677899999999888888887 9999999999
Q ss_pred CCCCcEEEEecccCeE
Q 043942 148 PGTSKYLVTGCVDGKV 163 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i 163 (216)
+|||..+++|+.|.++
T Consensus 440 SPdg~~i~t~a~DETl 455 (484)
T KOG0305|consen 440 SPDGETIVTGAADETL 455 (484)
T ss_pred CCCCCEEEEecccCcE
Confidence 9999999999999988
No 134
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=4.5e-17 Score=116.72 Aligned_cols=133 Identities=19% Similarity=0.270 Sum_probs=112.4
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---cc------------------cCcEEEEEECCCcc
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---GI------------------EDSTVWMWNADRGA 73 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---~~------------------~~~~v~i~d~~~~~ 73 (216)
.+|.++.++. ++|+.+-.+. |+|||+++.+.+.+++.... +. ..|.|.+||..+-+
T Consensus 88 t~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 88 TSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ 164 (391)
T ss_pred CceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence 4566777754 5677766554 99999999999888765411 11 78999999999999
Q ss_pred eeeeeeccCCCeeEEEEcCCCcEEEEecCCCe-EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNAT-LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
++..+..|.+.+.+++|+++|.+|||++..|+ |+|+.+.+|+.+.+|.... ....|.+++|+|++.
T Consensus 165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-------------~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-------------YPVSIYSLSFSPDSQ 231 (391)
T ss_pred eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-------------eeeEEEEEEECCCCC
Confidence 99999999999999999999999999999988 8999999999999997532 456789999999999
Q ss_pred EEEEecccCeE
Q 043942 153 YLVTGCVDGKV 163 (216)
Q Consensus 153 ~l~~~~~~~~i 163 (216)
+|.+.+..++|
T Consensus 232 ~L~~sS~TeTV 242 (391)
T KOG2110|consen 232 FLAASSNTETV 242 (391)
T ss_pred eEEEecCCCeE
Confidence 99999999888
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=2.1e-18 Score=131.09 Aligned_cols=189 Identities=14% Similarity=0.215 Sum_probs=127.8
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE--EeCCCCcc-----------------cCcEEEEEE
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT--VEGPRGGI-----------------EDSTVWMWN 68 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~~~~~~~~-----------------~~~~v~i~d 68 (216)
+...+|...|..+.|.|....|++++.|.++++||+...++... +.+|...+ .|+.+.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44558999999999999667899999999999999999888776 66666654 899999999
Q ss_pred CCCcc---------------------------eeeeeeccCCCeeE---EEEcCCCcEEEEecC-CCeEEEEeCCCCcee
Q 043942 69 ADRGA---------------------------YLNMFSGHGSGLTC---GDFTTDGKTICTGSD-NATLSIWNPKGGENF 117 (216)
Q Consensus 69 ~~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~ 117 (216)
++-.. .+....++...|.+ +.+..|...||+++. |+.|+|||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 86321 01122334455555 556678889999887 999999999976554
Q ss_pred EEeecccccccccceEEEeeeecCeEEEEe----------------------------------------------CCCC
Q 043942 118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSW----------------------------------------------PGTS 151 (216)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------------------------------------------~~~~ 151 (216)
..........-+.. ....-.+.++.. +|++
T Consensus 254 ~r~ep~~~~~~~t~----skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTH----SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred cccCCCcccCccCc----ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCC
Confidence 33332111100000 001122333333 4555
Q ss_pred cEEEEecccCeE---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942 152 KYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 152 ~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.++++|+.|... .+|...|+.++|.|.. .-+++|++|-.+++|++.++-
T Consensus 330 ~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 330 CSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 555555554433 6788889999998854 347788999999999986643
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=1.1e-17 Score=124.32 Aligned_cols=189 Identities=19% Similarity=0.187 Sum_probs=124.0
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------cCcEEEEE---------E
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------EDSTVWMW---------N 68 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------~~~~v~i~---------d 68 (216)
+..++..+|.+.|.+++.-.+|.+| +|+.|+.|..|| ..-+.++..+.++..- ..+.+.+= .
T Consensus 278 ~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt 355 (626)
T KOG2106|consen 278 RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT 355 (626)
T ss_pred eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence 4455566999999999999999755 499999999999 4444444444333211 11111111 1
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE--Eeec--ccccccccce------------
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH--AIRR--SSLEFSLNYW------------ 132 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~--~~~~--~~~~~~~~~~------------ 132 (216)
++++. .....+|......++.+|+.++++|++.|+.+++|+ ..+... .+.. ....+.+...
T Consensus 356 ~~~~f-~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 356 LENGF-TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFV 432 (626)
T ss_pred ecCCc-eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEE
Confidence 12111 123345777777777777777777777777777777 233221 1111 1111111110
Q ss_pred --------EEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942 133 --------MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 133 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d 188 (216)
........++++++|+|+|.+||.|+.|+.+ ..+.++|+.+.|++|+++|.+-+.|
T Consensus 433 ~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 433 LDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred EecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence 0011146789999999999999999999988 4556899999999999999999999
Q ss_pred CcEEEEEccc
Q 043942 189 GTARVFEIAE 198 (216)
Q Consensus 189 ~~v~vw~~~~ 198 (216)
-.|..|....
T Consensus 513 ~eiLyW~~~~ 522 (626)
T KOG2106|consen 513 YEILYWKPSE 522 (626)
T ss_pred eEEEEEcccc
Confidence 9999995443
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=127.86 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=140.1
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC---------CceEEEEeCCCCcc------------
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS---------RNLQCTVEGPRGGI------------ 59 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~---------~~~~~~~~~~~~~~------------ 59 (216)
|.+|+++..+.+|=..|+|+.|+-||.+|+|||.||.|.+|++.+ .++...+..|.-++
T Consensus 110 lssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 110 LSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNA 189 (476)
T ss_pred eccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccc
Confidence 468999999999999999999999999999999999999998642 24555666665544
Q ss_pred ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE-eecccccccccce
Q 043942 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA-IRRSSLEFSLNYW 132 (216)
Q Consensus 60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~ 132 (216)
.|.++++||+..+..+.++. ....+.+++.+|.++.+..|+.+|.|.+.++..-..... .............
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~ 268 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQI 268 (476)
T ss_pred eEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccccee
Confidence 89999999999999988887 557799999999999999999999999988875331110 1111111222334
Q ss_pred EEEeeeec--CeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCC
Q 043942 133 MICTSLYD--GVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE 180 (216)
Q Consensus 133 ~~~~~~~~--~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~ 180 (216)
....+|.. .|+|++++-||..|++|+.||.+ ....++|+.+.+.|-.+
T Consensus 269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 44555776 99999999999999999999998 22567888888876543
No 138
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=2.8e-18 Score=128.69 Aligned_cols=188 Identities=15% Similarity=0.216 Sum_probs=140.8
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG 84 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 84 (216)
+++.++++|.++|.|++..++++.+.+|+.||+|+.|++....-.. -.+|.. .....+.||.+.
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~--------------ds~dp~--vl~~~l~Ghtda 398 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD--------------DSYDPS--VLSGTLLGHTDA 398 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc--------------cccCcc--hhccceeccccc
Confidence 6788999999999999999999999999999999999876321100 011111 223567899999
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-----cccccc-------------------------ceEE
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-----LEFSLN-------------------------YWMI 134 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~-------------------------~~~~ 134 (216)
|+.+++++....|++++.||+++.|+...... .++.... ...+.. ...+
T Consensus 399 vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~ 477 (577)
T KOG0642|consen 399 VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLI 477 (577)
T ss_pred eeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheee
Confidence 99999999999999999999999999876554 2222210 000000 0000
Q ss_pred Ee-------eeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 135 CT-------SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 135 ~~-------~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
.. .....+..+.++|...+.+++..|+.+ ..|...++++++.|+|-+|++++.|+.+++
T Consensus 478 ~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 478 FESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred ccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeeh
Confidence 00 022457788899999999999999888 788889999999999999999999999999
Q ss_pred EEcccccceeecCCcc
Q 043942 194 FEIAEFRRATKAPSYS 209 (216)
Q Consensus 194 w~~~~~~~~~~~~~~~ 209 (216)
|.+....+......+.
T Consensus 558 ~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 558 WKLDVKTCVLESTAHR 573 (577)
T ss_pred hhccchheeecccccc
Confidence 9998777766554443
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=3e-17 Score=121.17 Aligned_cols=161 Identities=11% Similarity=0.070 Sum_probs=122.4
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeeeccCCCeeEEE
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGD 89 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 89 (216)
++.+++++.|+.+++||+.+++....+..+.... .++.|++||..+++.+..+..+.. +..++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 3578899999999999999998888776543211 578999999999888777765443 57889
Q ss_pred EcCCCcEEEEe-cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----
Q 043942 90 FTTDGKTICTG-SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----- 163 (216)
Q Consensus 90 ~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----- 163 (216)
|+|+++.++++ +.++.+++||+++++.+..+. ....+..++|+|++.+++++..++..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d 143 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIP----------------VGVEPEGMAVSPDGKIVVNTSETTNMAHFID 143 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee----------------CCCCcceEEECCCCCEEEEEecCCCeEEEEe
Confidence 99999877654 568999999999877666654 23346789999999999988776532
Q ss_pred ---------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccccccee
Q 043942 164 ---------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 164 ---------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~~~~ 203 (216)
......+..++|+|++++|+++ ..++.|++||+++++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~ 193 (300)
T TIGR03866 144 TKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK 193 (300)
T ss_pred CCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence 1112345678999999988644 468999999999876543
No 140
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.81 E-value=9.6e-20 Score=142.25 Aligned_cols=193 Identities=22% Similarity=0.354 Sum_probs=138.9
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
+.++.|.+|...|+|+.|...|.++++|+.|..|+||.+++..++..+.+|...+ .|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3456678999999999999999999999999999999999999999999998876 788899999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccce-----------EEEe-
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW-----------MICT- 136 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-----------~~~~- 136 (216)
++.+.++..+++|++.|++++|+|.. +.+.||++++||.+ .... .+...+..+..... ....
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~-~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPR-IYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-cccc-ccCCCCCCcccccceeeeeccccccccccc
Confidence 99999999999999999999999965 67899999999988 1111 11111111100000 0000
Q ss_pred -----eeecCeEEEEeCCCCcEEEEecccCe-------------------------EEeeeCCEEEEEEecCCC-eEEEE
Q 043942 137 -----SLYDGVTCLSWPGTSKYLVTGCVDGK-------------------------VDGHIDAIQSLSVSAIRE-SLVSV 185 (216)
Q Consensus 137 -----~~~~~v~~~~~~~~~~~l~~~~~~~~-------------------------i~~~~~~i~~~~~~~~~~-~l~s~ 185 (216)
.......+++|....-.+++.+.|-. ..+|...+..+.++|-.. ...++
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 01111223333333333333332211 167888999999999665 44588
Q ss_pred eCCCcEEEEEccccccee
Q 043942 186 SVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 186 ~~d~~v~vw~~~~~~~~~ 203 (216)
+.||...|||+..+.++.
T Consensus 415 g~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred cCCCceEeeecccCCcce
Confidence 999999999998876554
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.80 E-value=2.5e-17 Score=122.48 Aligned_cols=143 Identities=17% Similarity=0.279 Sum_probs=106.8
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------cCcEEEEEECCCcce
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------EDSTVWMWNADRGAY 74 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------~~~~v~i~d~~~~~~ 74 (216)
..+..+|.+..+.++.+|+.+.++|++.|+.+++|+-...+..+.+..+..+. ..|...+.|.++...
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l 440 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL 440 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccccee
Confidence 44566899999999999999999999999999999932222223333222221 677788899998655
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
+..-. .+.++++++|+|+|.+||.|+.|+.|++|.+............ + +..+|+.+.|++|++++
T Consensus 441 v~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k-----------~--~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 441 VTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK-----------C--SGSPITHLDWSSDSQFL 506 (626)
T ss_pred EEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee-----------e--cCceeEEeeecCCCceE
Confidence 55444 4889999999999999999999999999999865443322211 1 34788899999999888
Q ss_pred EEecccCeE
Q 043942 155 VTGCVDGKV 163 (216)
Q Consensus 155 ~~~~~~~~i 163 (216)
.+-+.|-.+
T Consensus 507 ~~~S~d~ei 515 (626)
T KOG2106|consen 507 VSNSGDYEI 515 (626)
T ss_pred EeccCceEE
Confidence 877766555
No 142
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.1e-19 Score=125.37 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=91.1
Q ss_pred CCCceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc------------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI------------------ 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~------------------ 59 (216)
.+|+.+..+++|...++.+.|.. ....+.+|+.||+|++||++.......+.. +.+..
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE 137 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTE 137 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccc
Confidence 46778899999999999999987 357899999999999999998755444322 22111
Q ss_pred ---cCcEEEEEECCCcce-eeee-eccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCC
Q 043942 60 ---EDSTVWMWNADRGAY-LNMF-SGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGG 114 (216)
Q Consensus 60 ---~~~~v~i~d~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~ 114 (216)
.+-.|.+||++..+. +..+ ..|...|+++.|+| +.+.|++|+.||.|.+||+...
T Consensus 138 ~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 138 LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 788899999997765 5443 57999999999999 5679999999999999999854
No 143
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=129.41 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=137.3
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---------ceEEEEe-CCC-Ccc---cCcEEEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---------NLQCTVE-GPR-GGI---EDSTVWMWN 68 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---------~~~~~~~-~~~-~~~---~~~~v~i~d 68 (216)
.|+..+.+.+|.+.|.+-.|+|||.-|+|++.||.|++|.-..+ +.+.... .+. ..+ ..+.+.+-.
T Consensus 93 ~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp 172 (737)
T KOG1524|consen 93 SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKP 172 (737)
T ss_pred cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEee
Confidence 45566677899999999999999999999999999999986532 2222221 111 111 566666666
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
+.....+..+++|.+-|.++.|+|..+.+++|+.|-..++||-. |..+..-.. |..+|++++|+
T Consensus 173 L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~---------------~ey~ITSva~n 236 (737)
T KOG1524|consen 173 LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA---------------EEYAITSVAFN 236 (737)
T ss_pred cccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh---------------hccceeeeeec
Confidence 76666777889999999999999999999999999999999976 665555444 88999999999
Q ss_pred CCCcEEEEecccCeE--EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 149 GTSKYLVTGCVDGKV--DGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i--~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
|+ ..++.++.+-.- ....+.|..++||+||..++.|...|.+.+=
T Consensus 237 pd-~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 237 PE-KDYLLWSYNTARFSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred cc-cceeeeeeeeeeecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 99 667777665433 5566889999999999999988888877553
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.6e-17 Score=124.10 Aligned_cols=183 Identities=16% Similarity=0.165 Sum_probs=146.9
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCcc----------------cCcEEEEEECCCccee
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGGI----------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~ 75 (216)
-..+|.+++++.+.+.||.+-.+|+|.+|++...- ....+.++.... .+|.|.-||+.++++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCcee
Confidence 45789999999999999999999999999998753 334555554433 7899999999999999
Q ss_pred eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
..+....+.|++++.+|.+..++.|++||.+..++...++......... ..+.+.++.|+|++..++
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r-------------q~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR-------------QKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-------------ccceEEEEEecCCccEEE
Confidence 9999889999999999999999999999988888888776554332211 568899999999999999
Q ss_pred EecccCeE---------Eee-------------eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 156 TGCVDGKV---------DGH-------------IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 156 ~~~~~~~i---------~~~-------------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
.|+.||.| ..| ..-|+++.|-.++ .|++|..-|+|.+||...+........+.
T Consensus 171 ~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ 245 (691)
T KOG2048|consen 171 GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHD 245 (691)
T ss_pred ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhh
Confidence 99999977 112 2236666666554 58889889999999998887766554443
No 145
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=4.6e-19 Score=121.74 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=140.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC-CCCcc------------------------
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-PRGGI------------------------ 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~~------------------------ 59 (216)
.+...|++|.+.|+++.|..+++ |.+|...|.|++|++.+......++. +...+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWT 83 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEE
Confidence 45667889999999999998764 99999999999999987654443331 11100
Q ss_pred --------------------------------------------------------------------------------
Q 043942 60 -------------------------------------------------------------------------------- 59 (216)
Q Consensus 60 -------------------------------------------------------------------------------- 59 (216)
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence
Q ss_pred ---------cCcEEEEEECCCccee----------eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee---
Q 043942 60 ---------EDSTVWMWNADRGAYL----------NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF--- 117 (216)
Q Consensus 60 ---------~~~~v~i~d~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~--- 117 (216)
++|.+.+||+.++..+ .....|..+|.++.|.+.-..=++|+.+..+..|.+......
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 8999999999987433 334468899999999987777788888889999988743211
Q ss_pred -EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeE
Q 043942 118 -HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESL 182 (216)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l 182 (216)
.+... ....+..+.+.||++.+++++.|+.+ .-|...|.+++|+|+...+
T Consensus 244 ~~e~~l---------------knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 244 RKEITL---------------KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred cceEEe---------------cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 12221 45678889999999999999999998 6788999999999999999
Q ss_pred EEEeCCCcEEEEEc
Q 043942 183 VSVSVDGTARVFEI 196 (216)
Q Consensus 183 ~s~~~d~~v~vw~~ 196 (216)
|+++.|+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 146
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=117.42 Aligned_cols=185 Identities=15% Similarity=0.116 Sum_probs=135.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------cCcEEEEEECCCcce---
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------EDSTVWMWNADRGAY--- 74 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------~~~~v~i~d~~~~~~--- 74 (216)
.+.+.+.+|..+|.+++||+||+.|+|+|.|..|.+||+..|.+++.+.....-. ..+.+.+--++....
T Consensus 56 ~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 56 RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVID 135 (405)
T ss_pred chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEE
Confidence 4456778999999999999999999999999999999999999988887655422 222222222221111
Q ss_pred ----eeeeec--cC----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 75 ----LNMFSG--HG----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 75 ----~~~~~~--~~----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
++++.. .. ..-.+..|.+.|+++++|...|.+.++|..+.+.+..++.. ....|.+
T Consensus 136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--------------s~~~IK~ 201 (405)
T KOG1273|consen 136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--------------SVQAIKQ 201 (405)
T ss_pred ecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--------------hheeeeE
Confidence 111111 11 11223458889999999999999999999999988888751 2367899
Q ss_pred EEeCCCCcEEEEecccCeE----------Eee---------------eCCEEEEEEecCCCeEEEEeC-CCcEEEEEccc
Q 043942 145 LSWPGTSKYLVTGCVDGKV----------DGH---------------IDAIQSLSVSAIRESLVSVSV-DGTARVFEIAE 198 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i----------~~~---------------~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~ 198 (216)
+.++..|++|+.-+.|+.| .+. .-.-.+++|+.+|.|+++++. ...++||.-..
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 9999999999999999988 111 112357899999999988775 46899999877
Q ss_pred cccee
Q 043942 199 FRRAT 203 (216)
Q Consensus 199 ~~~~~ 203 (216)
+..+.
T Consensus 282 GsLVK 286 (405)
T KOG1273|consen 282 GSLVK 286 (405)
T ss_pred cceee
Confidence 66544
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.6e-18 Score=124.72 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=138.8
Q ss_pred eccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942 11 LGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG 72 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~ 72 (216)
.+|++.|.+++|+.. .+.||+||.|.+|++||+.++++..++..|...+ .|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 479999999999985 4789999999999999999999888887666554 8999999999843
Q ss_pred cee-eeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 73 AYL-NMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 73 ~~~-~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
... ..++ ..+.|-.++|.|.. ..++++..||+++-+|+|+. +++.++.. |.++|.++++++
T Consensus 320 ~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A---------------Hd~~ISgl~~n~ 383 (463)
T KOG0270|consen 320 SNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA---------------HDDEISGLSVNI 383 (463)
T ss_pred cccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe---------------ccCCcceEEecC
Confidence 222 2233 45779999999954 56777889999999999975 77888887 999999999987
Q ss_pred C-CcEEEEecccCeE-------------Eeee---CCEEEEEEecCCC-eEEEEeCCCcEEEEEccccccee
Q 043942 150 T-SKYLVTGCVDGKV-------------DGHI---DAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 150 ~-~~~l~~~~~~~~i-------------~~~~---~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
. ..++++++.++.+ ..|. +...++++.|+-. +++.|+..+.++|||+.+.....
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 5 4578889999988 1121 2355667777665 45667777889999998876554
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.5e-17 Score=114.66 Aligned_cols=170 Identities=22% Similarity=0.339 Sum_probs=123.5
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCccee
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~ 75 (216)
.|..++.+++|.++ ..+++|+.||.|+.+|+++++....- .|..++ +|++|++||.+.....
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig-th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG-THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV 129 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec-cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc
Confidence 38899999999985 57999999999999999987543321 222221 8999999999986666
Q ss_pred eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE---------------------
Q 043942 76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI--------------------- 134 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 134 (216)
..+. ....|.++... ++.|++|+.|..+.+||+++.....+....++..+.+....
T Consensus 130 ~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~ 206 (323)
T KOG1036|consen 130 GTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF 206 (323)
T ss_pred cccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence 6655 34478888765 77999999999999999997654332222222111111100
Q ss_pred ------------Eee---------eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCC
Q 043942 135 ------------CTS---------LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR 179 (216)
Q Consensus 135 ------------~~~---------~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~ 179 (216)
+.- .--+|++++|+|-...|++|+.||.+ ......|..++|+.+|
T Consensus 207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDG 286 (323)
T ss_pred CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCC
Confidence 000 23468999999999999999999998 2334679999999999
Q ss_pred CeEEEEe
Q 043942 180 ESLVSVS 186 (216)
Q Consensus 180 ~~l~s~~ 186 (216)
..||.++
T Consensus 287 ~~LAia~ 293 (323)
T KOG1036|consen 287 SLLAIAS 293 (323)
T ss_pred CeEEEEe
Confidence 9999876
No 149
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=1.4e-17 Score=117.66 Aligned_cols=139 Identities=14% Similarity=0.211 Sum_probs=110.7
Q ss_pred ccccceEEEEEcc-----CCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc----------------------cC
Q 043942 12 GHKDSFSSLAFST-----DGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI----------------------ED 61 (216)
Q Consensus 12 ~h~~~v~~~~~s~-----~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~----------------------~~ 61 (216)
.|..+|..++|++ .-+.+|+++. ..+.+|.....- .++.+....... .-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 6788999999985 1246777764 467777765432 222222211110 67
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
|.|+|.|+.+++....+.+|...|+.+.++|+ .+++++++.|..|++|++++..++..+.+. .+|.+
T Consensus 115 GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~------------egHrd 182 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV------------EGHRD 182 (385)
T ss_pred eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc------------ccccC
Confidence 88999999999999999999999999999995 478899999999999999999999888752 24999
Q ss_pred CeEEEEeCCCCcEEEEecccCeE
Q 043942 141 GVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.|.++.|+++|.+|++++.|..+
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhsl 205 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSL 205 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceE
Confidence 99999999999999999999988
No 150
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1e-18 Score=140.26 Aligned_cols=181 Identities=14% Similarity=0.225 Sum_probs=141.2
Q ss_pred ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc-----------------cCcEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI-----------------EDSTV 64 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~-----------------~~~~v 64 (216)
+.+.+...|.+.|..+.|++.+ ++||+|+.||.|.|||++..+.-...... ...+ .++.+
T Consensus 107 ~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 107 EVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 3456777899999999999965 59999999999999999875443333211 1111 78899
Q ss_pred EEEECCCcceeeeeeccCC--CeeEEEEcCCC-cEEEEecCCC---eEEEEeCCCCc-eeEEeecccccccccceEEEee
Q 043942 65 WMWNADRGAYLNMFSGHGS--GLTCGDFTTDG-KTICTGSDNA---TLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~t~~~d~---~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
.|||++..+++..+..+.+ .+..++|+|+. ..+++++.|. .|.+||+|.-. .++.+..
T Consensus 187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--------------- 251 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--------------- 251 (1049)
T ss_pred eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc---------------
Confidence 9999999888887776654 47799999975 4677776554 49999998643 4556655
Q ss_pred eecCeEEEEeCCCC-cEEEEecccCeE--------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEccccc
Q 043942 138 LYDGVTCLSWPGTS-KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 138 ~~~~v~~~~~~~~~-~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~ 200 (216)
|...|.++.|++.+ .++++++.|+.+ .....++..+.|+|..- .++.++.||.|-|+.+....
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999866 889999999988 22346799999999775 77788899999999987644
No 151
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=2e-17 Score=116.53 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=124.8
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG 88 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~ 88 (216)
.+.--..+|+|.+|++|+..+|.+-....|.||.....+. .++.+++..|...|+.+
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------------------w~~~htls~Hd~~vtgv 61 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------------------WEPAHTLSEHDKIVTGV 61 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------ceeceehhhhCcceeEE
Confidence 4444567999999999999999999777777776554331 34567888899999999
Q ss_pred EEcCCCcEEEEecCCCeEEEEeC-CCCceeE--EeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 89 DFTTDGKTICTGSDNATLSIWNP-KGGENFH--AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 89 ~~~~~~~~l~t~~~d~~i~~wd~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
+|+|..+.|++++.|+.-++|.. ..++-.. .+.. ++...+++.|+|.++.|++|+.-..+
T Consensus 62 dWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlR---------------iNrAAt~V~WsP~enkFAVgSgar~isV 126 (361)
T KOG1523|consen 62 DWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLR---------------INRAATCVKWSPKENKFAVGSGARLISV 126 (361)
T ss_pred eecCCCCceeEccCCCCccccccCCCCeeccceeEEE---------------eccceeeEeecCcCceEEeccCccEEEE
Confidence 99999999999999999999998 4443333 2322 78899999999999999999998887
Q ss_pred ----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 164 ----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 164 ----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
..+.+.|++++|+|++-+|++|+.|+..||+..
T Consensus 127 cy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 456778999999999999999999999999975
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=1.3e-17 Score=127.93 Aligned_cols=159 Identities=21% Similarity=0.283 Sum_probs=128.4
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT 86 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~ 86 (216)
+..|-||...|++++.+|+|+++||++..... ....|++|+..+...+..+.+|.-.|+
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---------------------ehAvI~lw~t~~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLK---------------------EHAVIRLWNTANWLQVQELEGHSLTVT 576 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCc---------------------cceEEEEEeccchhhhheecccceEEE
Confidence 44567999999999999999999999876543 566788898888888888999999999
Q ss_pred EEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---
Q 043942 87 CGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--- 163 (216)
Q Consensus 87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--- 163 (216)
.++|+||+++|++.++|+++.+|....... ..+.... ...|..-|.+..|+|++.++++++.|..+
T Consensus 577 ~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-~e~~fa~----------~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-DEFRFAC----------LKAHTRIIWDCSWSPDEKYFATASRDKKVKVW 645 (764)
T ss_pred EEEECCCCcEEEEeecCceEEeeeeecccc-hhhhhcc----------ccccceEEEEcccCcccceeEEecCCceEEEE
Confidence 999999999999999999999999854322 1111000 11288889999999999999999999998
Q ss_pred ---------------EeeeCCEEEEEEecC-----CCeEEEEeCCCcEEEEEcc
Q 043942 164 ---------------DGHIDAIQSLSVSAI-----RESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 164 ---------------~~~~~~i~~~~~~~~-----~~~l~s~~~d~~v~vw~~~ 197 (216)
..+..+|+.+++.|- +..++.|-+.|.|.+|...
T Consensus 646 ~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 646 EEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 356678999999872 2256667778999999965
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=1.1e-17 Score=124.26 Aligned_cols=173 Identities=11% Similarity=0.191 Sum_probs=139.8
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS 79 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~ 79 (216)
.-.|++......|+++|+..+.|+|||++...+.+.+..|...+ ..|.|.+..+.++.....+.
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 34566666666899999999999999999877777777777655 67888888888888777777
Q ss_pred ccCC-CeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEE
Q 043942 80 GHGS-GLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVT 156 (216)
Q Consensus 80 ~~~~-~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 156 (216)
...+ .|.-+.|+|..+ +|.+++.+|.|.+||+....+...+.. .|..+...++|+|.. .+|++
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--------------~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--------------AHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--------------hccCCcCcceecCCccceEEE
Confidence 4434 455899999765 456789999999999997777665543 188999999999955 56788
Q ss_pred ecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 157 GCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 157 ~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.+.|..| .....+.+.++|.++|.+|++|...|.|..||++..+..
T Consensus 227 VG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 8999888 455678999999999999999999999999999975543
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.4e-18 Score=138.18 Aligned_cols=181 Identities=18% Similarity=0.272 Sum_probs=140.0
Q ss_pred ccceEEEEEccCCCE----EEEEcCCCcEEEEECCCC------ceEEEEeCCCCcc-----------------cCcEEEE
Q 043942 14 KDSFSSLAFSTDGQL----LASGGFHGLVQNRDTSSR------NLQCTVEGPRGGI-----------------EDSTVWM 66 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~----l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~~~-----------------~~~~v~i 66 (216)
....+.++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.+ .+|.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456889999997754 888999999999998652 3344445555544 8999999
Q ss_pred EECCCcceeeee--eccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 67 WNADRGAYLNMF--SGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 67 ~d~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
||++..+.-... ....+.|.+++|+. ....|++++.+|++.+||++..+.+-.+.... ....+.
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~-------------~~~~~S 210 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP-------------GRMHCS 210 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-------------Ccccee
Confidence 999864433333 22456899999987 45678899999999999999887776665411 224577
Q ss_pred EEEeCCCCc-EEEEecccCeE------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccccee
Q 043942 144 CLSWPGTSK-YLVTGCVDGKV------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 144 ~~~~~~~~~-~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.+.|+|+.. .++++++|... .+|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+.
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEee
Confidence 899999764 56666665543 6899999999999976 899999999999999999999888
Q ss_pred ecCC
Q 043942 204 KAPS 207 (216)
Q Consensus 204 ~~~~ 207 (216)
++|.
T Consensus 291 ~~p~ 294 (1049)
T KOG0307|consen 291 ELPA 294 (1049)
T ss_pred ecCC
Confidence 8876
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=4.8e-17 Score=119.44 Aligned_cols=178 Identities=16% Similarity=0.218 Sum_probs=139.5
Q ss_pred ceeEEeeccccceEEEEEccCC--CEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc-----------------cC
Q 043942 5 DWASEILGHKDSFSSLAFSTDG--QLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI-----------------ED 61 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~-----------------~~ 61 (216)
......+-+.++|++++|+|.. +++|+|+.-|.|-+||+.+. ..+..+..|..++ .|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 3445667789999999999954 58899999999999999522 2233344444433 89
Q ss_pred cEEEEEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeee
Q 043942 62 STVWMWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
|+|++-|++++.....+. .....+.++.|+.+...++.+..=|...+||++++.. ...+.. |
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l---------------h 321 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL---------------H 321 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh---------------h
Confidence 999999998764433333 3455678889988888888888878999999998765 444444 7
Q ss_pred ecCeEEEEeCCCC-cEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 139 YDGVTCLSWPGTS-KYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 139 ~~~v~~~~~~~~~-~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
...|+.++++|.. .++++++.|+.. ..|...|.++.|||.+-.|++.+.|..|+|||..
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 7799999999955 578899999887 4688899999999998789999999999999984
No 156
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=124.26 Aligned_cols=174 Identities=18% Similarity=0.262 Sum_probs=125.6
Q ss_pred ccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcccCcEEEEEECC-CcceeeeeeccCCCeeEEE
Q 043942 14 KDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGIEDSTVWMWNAD-RGAYLNMFSGHGSGLTCGD 89 (216)
Q Consensus 14 ~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~v~i~d~~-~~~~~~~~~~~~~~v~~~~ 89 (216)
+..|+|+.|-|. ...|+.+-.+|.+++||....- .-..+..+..+ ..-.|..|--. +..++..+.--.+.|...+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~-~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG-DQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC-CeeEEeeeeccccCCccceeEecccccccee
Confidence 368999999994 4567777789999999873210 00011111100 11112222221 2245555544556899999
Q ss_pred EcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------
Q 043942 90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------ 163 (216)
Q Consensus 90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------ 163 (216)
|+|||++||+.+.||.++|||..+.+.+..++. -.+...|++|+|||++|++|++|..+
T Consensus 298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---------------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---------------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred EcCCCceEEEEecCceEEEeeccHHHHHHHHHh---------------hccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 999999999999999999999998887776665 66889999999999999999999987
Q ss_pred --------EeeeCCEEEEEEecC-----------------------------------C-------------CeEEEEeC
Q 043942 164 --------DGHIDAIQSLSVSAI-----------------------------------R-------------ESLVSVSV 187 (216)
Q Consensus 164 --------~~~~~~i~~~~~~~~-----------------------------------~-------------~~l~s~~~ 187 (216)
++|..+|..++|+|. + -.|.+.+.
T Consensus 363 erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGq 442 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQ 442 (636)
T ss_pred cceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccc
Confidence 799999999999830 1 13567889
Q ss_pred CCcEEEEEccccccee
Q 043942 188 DGTARVFEIAEFRRAT 203 (216)
Q Consensus 188 d~~v~vw~~~~~~~~~ 203 (216)
|-.+.+||+.......
T Consensus 443 DTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 443 DTQLCLWDLTEDVLVP 458 (636)
T ss_pred cceEEEEecchhhccc
Confidence 9999999998755443
No 157
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.4e-17 Score=114.87 Aligned_cols=168 Identities=20% Similarity=0.331 Sum_probs=133.9
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCCcceeee--eeccC-CCe
Q 043942 27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADRGAYLNM--FSGHG-SGL 85 (216)
Q Consensus 27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~~~~~~~--~~~~~-~~v 85 (216)
..+|++-..|.|++||..+++.+..+.++.... .||+|++||++....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 458888889999999999999988888766543 899999999997655433 44454 466
Q ss_pred eEEEEcCCCcEEEEec----CCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecc
Q 043942 86 TCGDFTTDGKTICTGS----DNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCV 159 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 159 (216)
.+++.+-+++.+++|. .+..+.+||++..++ +..+.. .|.+.|++++|+| +.+.|++|+.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--------------SH~DDVT~lrFHP~~pnlLlSGSv 186 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--------------SHNDDVTQLRFHPSDPNLLLSGSV 186 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--------------hccCcceeEEecCCCCCeEEeecc
Confidence 7888777788888886 577899999998776 444432 2999999999999 5679999999
Q ss_pred cCeE-----------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942 160 DGKV-----------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 160 ~~~i-----------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
||.+ ..|...|..+.|..++ +.|.+-+......+|+++.+.....++.+
T Consensus 187 DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 187 DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence 9998 5667789999999887 45778888999999999998866655443
No 158
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.7e-17 Score=120.47 Aligned_cols=155 Identities=25% Similarity=0.354 Sum_probs=119.9
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942 18 SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI 97 (216)
Q Consensus 18 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 97 (216)
.+++|+.+|..+++++.||++|||+..+.+ .+.....|...|.+++|+|||++|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--------------------------t~l~e~~~~~eV~DL~FS~dgk~l 201 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--------------------------TILEEIAHHAEVKDLDFSPDGKFL 201 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------------------------hhhhhHhhcCccccceeCCCCcEE
Confidence 689999999999999988888888755433 333445688899999999999999
Q ss_pred EEecCCCeEEEEeCCCCceeEEeeccccc-------c--cc--cceEEEe----------------------------ee
Q 043942 98 CTGSDNATLSIWNPKGGENFHAIRRSSLE-------F--SL--NYWMICT----------------------------SL 138 (216)
Q Consensus 98 ~t~~~d~~i~~wd~~~~~~~~~~~~~~~~-------~--~~--~~~~~~~----------------------------~~ 138 (216)
++-+.| ..+||+.+++..+......... + +. ..+.+.. ..
T Consensus 202 asig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 202 ASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 999999 8999999998555444311000 0 00 0000000 01
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
...|.+++.+++|++++.|+.+|.+ +.|...|+.+.|+|+.+++++.+.|....|..+.-.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 3478999999999999999999988 789999999999999999999999999999888753
No 159
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=2.8e-17 Score=114.54 Aligned_cols=174 Identities=14% Similarity=0.278 Sum_probs=129.3
Q ss_pred ccccceEEEEEccCC-----CEEEEEcCCCcEEEEECCCC--ceE--EEEeCCCC-----cc-----------------c
Q 043942 12 GHKDSFSSLAFSTDG-----QLLASGGFHGLVQNRDTSSR--NLQ--CTVEGPRG-----GI-----------------E 60 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~-----~~l~s~~~d~~v~vwd~~~~--~~~--~~~~~~~~-----~~-----------------~ 60 (216)
.|..+++.+.|.|+. ++|||++ ..+|+|.+... +.. ..+..+.. ++ -
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588999999999976 3677765 37999998742 211 11111111 11 6
Q ss_pred CcEEEEEECCCcce---eeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 61 DSTVWMWNADRGAY---LNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 61 ~~~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
|-+..|||++++.. ...+-+|...|..++|...+ +.+|+.+.||.+++||++.......+...+.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~----------- 240 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS----------- 240 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-----------
Confidence 88999999998633 55677899999999999855 4789999999999999998766554443211
Q ss_pred eeecCeEEEEeCC-CCcEEEEecccCe-E---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccc
Q 043942 137 SLYDGVTCLSWPG-TSKYLVTGCVDGK-V---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 137 ~~~~~v~~~~~~~-~~~~l~~~~~~~~-i---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~ 198 (216)
...+...++|++ |.+++++-..|.. + .+|...|..++|.|.. ..|++++.|..+.+||+..
T Consensus 241 -~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 241 -PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 256788899987 4567776555443 1 8999999999999964 6899999999999999986
Q ss_pred c
Q 043942 199 F 199 (216)
Q Consensus 199 ~ 199 (216)
.
T Consensus 320 ~ 320 (364)
T KOG0290|consen 320 M 320 (364)
T ss_pred c
Confidence 4
No 160
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=5.4e-17 Score=120.62 Aligned_cols=158 Identities=11% Similarity=0.194 Sum_probs=133.5
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW 67 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~ 67 (216)
+.+.+++|.+.|+++.++....|||+++..|.|.|..+.++.....+..+.+.. .+|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 456788999999999999999999999999999999998876555554443322 89999999
Q ss_pred ECCCcceeee-eeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 68 NADRGAYLNM-FSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 68 d~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
|+....++.. ...|..+...++|+| +..+|++.+.|..|.+||.+..+....+. -..+...+
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----------------y~~Plstv 256 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----------------YSHPLSTV 256 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----------------ecCCccee
Confidence 9997766654 467999999999999 55678899999999999999777766665 56788999
Q ss_pred EeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCC
Q 043942 146 SWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIR 179 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~ 179 (216)
+|.++|.+|+.|...|.+ ..|...|++++|-|.-
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999999999999988 6788899999998764
No 161
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.75 E-value=2.9e-17 Score=126.91 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=139.8
Q ss_pred EeeccccceEEEEEccC-----------CCEEEEEcCCCcEEEEECCCCceEEEEeC--------------CC------C
Q 043942 9 EILGHKDSFSSLAFSTD-----------GQLLASGGFHGLVQNRDTSSRNLQCTVEG--------------PR------G 57 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~-----------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--------------~~------~ 57 (216)
.+-.|..-|+++.--|. ...|.||+.|++||+||+..+.--..+.. .. .
T Consensus 364 s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~ 443 (1080)
T KOG1408|consen 364 SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDA 443 (1080)
T ss_pred eeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhc
Confidence 34457777887776551 13699999999999999986321111100 00 0
Q ss_pred --cc-------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC---CCcEEEEec
Q 043942 58 --GI-------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT---DGKTICTGS 101 (216)
Q Consensus 58 --~~-------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~t~~ 101 (216)
++ ..|++++|++...+....+++|...|.|+.|+. ..++||+++
T Consensus 444 ~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas 523 (1080)
T KOG1408|consen 444 SAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS 523 (1080)
T ss_pred cCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc
Confidence 00 788999999999888888999999999999985 357899999
Q ss_pred CCCeEEEEeCCCCc-eeEEeeccc-----ccccccc---eEEEee--------------------------eecCeEEEE
Q 043942 102 DNATLSIWNPKGGE-NFHAIRRSS-----LEFSLNY---WMICTS--------------------------LYDGVTCLS 146 (216)
Q Consensus 102 ~d~~i~~wd~~~~~-~~~~~~~~~-----~~~~~~~---~~~~~~--------------------------~~~~v~~~~ 146 (216)
.|+.|.+||+...- .++++...+ ..+.... .++..+ ....++.++
T Consensus 524 rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 524 RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 99999999997543 333333310 0011000 001000 223467778
Q ss_pred eCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 147 WPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
..|..+++++++.|..| ..|.+....+..+|.|.|+++...|+++.++|+.+++++..+..|+
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHs 683 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHS 683 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcc
Confidence 88888888888888777 5666777888888888888888888889999988888887776665
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2e-15 Score=115.79 Aligned_cols=185 Identities=20% Similarity=0.304 Sum_probs=142.4
Q ss_pred EEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 8 SEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 8 ~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
..+.++. ..|.+++|++ +..|.+.+.+|.|.-||+.+++....++.....+ .||.++.++..
T Consensus 62 ~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence 3455554 5799999995 5568888899999999999999888887666554 78877777777
Q ss_pred Cccee--eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 71 RGAYL--NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 71 ~~~~~--~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
.+... ..+...++.+.+++|+|++..+++|+.||.|++||..++..++.....-.... .....-|.++.|-
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~-------k~~~~iVWSv~~L 213 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLS-------KREPTIVWSVLFL 213 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccc-------cCCceEEEEEEEe
Confidence 66544 33445668999999999999999999999999999999988774432111000 0023345666666
Q ss_pred CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.+ ..|++|..-|.+ ..|...|.+++..+++.++++++.|+.|.-+...+.+.
T Consensus 214 rd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 214 RD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred ec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 44 568899998988 67889999999999999999999999999888776543
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=2.6e-17 Score=120.76 Aligned_cols=185 Identities=13% Similarity=0.092 Sum_probs=137.8
Q ss_pred eeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEE--EE----------eCCCCc--c----cCcEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQC--TV----------EGPRGG--I----EDSTVWM 66 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~--~~----------~~~~~~--~----~~~~v~i 66 (216)
-+..+..|..+|.++.|+|. -..+++.|+||+|+.-|++...... .. +..... + .-|...+
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence 35567789999999999994 4789999999999999998753211 11 111110 1 3447789
Q ss_pred EECCCcce-eeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEE--eecccccccccceEEEeeeecCe
Q 043942 67 WNADRGAY-LNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHA--IRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 67 ~d~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
||.+++.. ...++-|...|++++++|. ..+++|++.|++.++||++.-..... +.. ..|...|
T Consensus 306 iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-------------~~HrrsV 372 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-------------LPHRRSV 372 (498)
T ss_pred EEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec-------------cccccee
Confidence 99997654 5667778889999999995 45789999999999999996432221 110 1188999
Q ss_pred EEEEeCCCCcEEEEecccCeE-----------------EeeeC------CEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV-----------------DGHID------AIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
.+..|+|.+..|++.+.|..| ..|.. ..-...|.|+..+++++-.-..|-|+|-..+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC
Confidence 999999988889999999887 12211 2345689999999999999999999998777
Q ss_pred ccee
Q 043942 200 RRAT 203 (216)
Q Consensus 200 ~~~~ 203 (216)
+.+.
T Consensus 453 q~v~ 456 (498)
T KOG4328|consen 453 QMVC 456 (498)
T ss_pred EEee
Confidence 7443
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=4.3e-17 Score=124.59 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=126.1
Q ss_pred ccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc-----------------cCcEEEEEE
Q 043942 14 KDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI-----------------EDSTVWMWN 68 (216)
Q Consensus 14 ~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~-----------------~~~~v~i~d 68 (216)
...|+++.|.| |.+.||.++.||.|++|.+..+ .....+..|...+ .|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 35799999999 7789999999999999998754 2333444444433 899999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+++.+....+.+|.+.|..++|+|+|+.+++.+.||++++|+.+++.. +++-+.. ....--.+.|
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp--------------vgtRgARi~w 772 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP--------------VGTRGARILW 772 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC--------------ccCcceeEEE
Confidence 999998889999999999999999999999999999999999997653 3332221 1233345677
Q ss_pred CCCCcEEEEecccCeE------------EeeeCCEEEEE---------EecCCC-eEEEEeCCCcEEEEEccccc
Q 043942 148 PGTSKYLVTGCVDGKV------------DGHIDAIQSLS---------VSAIRE-SLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i------------~~~~~~i~~~~---------~~~~~~-~l~s~~~d~~v~vw~~~~~~ 200 (216)
.-+|+++++.+.|..- ....-....+. +++|.. ++++|-.|..|.+|.+-..+
T Consensus 773 acdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 773 ACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred EecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 7788888877766543 10111122222 233444 56678889999999975433
No 165
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.8e-16 Score=125.05 Aligned_cols=168 Identities=18% Similarity=0.273 Sum_probs=138.2
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeee
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~ 77 (216)
.-++.+++++-+|+++|.||.|-.|++-++.+....+.+++|..++ .||.|++||+.++....+
T Consensus 96 tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 96 TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred eccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 4579999999999999999999999999999999999999988877 899999999998877666
Q ss_pred eecc--------CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 78 FSGH--------GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 78 ~~~~--------~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
+.+- ...+..++|+|++..++..+.|+.|++|+..+......+.... +...+..+.|+|
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~-------------~ss~~~~~~wsP 242 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL-------------SSSKFSDLQWSP 242 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccc-------------cccceEEEEEcC
Confidence 5431 3456789999999999999999999999999988877776532 334489999999
Q ss_pred CCcEEEEecccCeE----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 150 TSKYLVTGCVDGKV----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 150 ~~~~l~~~~~~~~i----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
+|.|||+++.+|.| ......|.+++|.|+++-+-.-...|...+|
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t~~~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDTHERHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCcEEeeeccCCcEEEEecccchhccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999998 1235689999999998765443334444333
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=1.5e-16 Score=112.63 Aligned_cols=102 Identities=28% Similarity=0.553 Sum_probs=91.4
Q ss_pred cccceEEEEEccCC----CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCC
Q 043942 13 HKDSFSSLAFSTDG----QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADR 71 (216)
Q Consensus 13 h~~~v~~~~~s~~~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~ 71 (216)
|....+.++|+-+. .++|.++.-|.|+|.|+.+++..+.+.+|...+ .|..|++||+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 67788889998743 479999999999999999999999998888766 899999999999
Q ss_pred cceeeee---eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC
Q 043942 72 GAYLNMF---SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG 114 (216)
Q Consensus 72 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~ 114 (216)
..++..+ .+|.+.|.++.|+++|.+|++++.|.++++|++...
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 9988775 579999999999999999999999999999999843
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=2.6e-16 Score=115.81 Aligned_cols=155 Identities=12% Similarity=0.160 Sum_probs=126.0
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
.+.|+++.|+|....|++|+.|+.+++|.+.. ++...++.+.-...+|.+..|.|+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDG------------------------k~N~~lqS~~l~~fPi~~a~f~p~ 268 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDG------------------------KVNPKLQSIHLEKFPIQKAEFAPN 268 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecC------------------------ccChhheeeeeccCccceeeecCC
Confidence 36899999999999999999999998887642 234455666666789999999999
Q ss_pred Cc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------
Q 043942 94 GK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------- 163 (216)
Q Consensus 94 ~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------- 163 (216)
|. .+++++....++.||+.+.+..+.-..... ....+.....++++++|+..+..|.|
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~------------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGV------------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCc------------ccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 98 899999999999999998775443332111 23456777889999999999999998
Q ss_pred ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
..-.+.|..++|+.+++.|++++.+|.|.+||++...++..
T Consensus 337 li~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 337 LITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred hhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEE
Confidence 34457899999999999999999999999999998766544
No 168
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=1.7e-17 Score=122.17 Aligned_cols=171 Identities=15% Similarity=0.224 Sum_probs=149.4
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeecc
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGH 81 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~ 81 (216)
..+.+.++.+|++|+.|+..|.+-.+|..++++..++....... ....++|||-. |..++.++.|
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~ 209 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRH 209 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhc
Confidence 45678999999999999999999999999999988886544322 88899999965 7777888866
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG 161 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 161 (216)
..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+.. ..+.+..++-+|-...+-+|..+|
T Consensus 210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---------------~~G~~~vm~qNP~NaVih~GhsnG 273 (545)
T KOG1272|consen 210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---------------GAGRTDVMKQNPYNAVIHLGHSNG 273 (545)
T ss_pred -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---------------cCCccchhhcCCccceEEEcCCCc
Confidence 5599999999999999999999999999999999988876 567777788888888888888888
Q ss_pred eE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 162 KV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 162 ~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.+ ..|.++|.++++.++|+|++|.+.|..++|||++....+.
T Consensus 274 tVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred eEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence 88 6899999999999999999999999999999999877554
No 169
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.1e-16 Score=105.47 Aligned_cols=150 Identities=19% Similarity=0.330 Sum_probs=121.1
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc--------------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI-------------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~-------------------- 59 (216)
.+|+..+.+.+|.+.|.++- +=+|-.+++|+.|.+|+.||++-..++.++.. +..+.
T Consensus 171 ~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 35778888999999998762 33578999999999999999998777776643 22221
Q ss_pred -cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 60 -EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 60 -~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
.|....+||++.+++++.+..|...|.|+.|+|...++++++.|..|++-|+. |...++++. .+...|
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~----------~vv~eh 318 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPI----------MVVAEH 318 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCce----------EEEEec
Confidence 78899999999999999999999999999999999999999999999999988 544444332 223338
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.+.+..+.|+|+.--+++.+.|...
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred cCceEEEEecCccceeeeccCcceE
Confidence 8999999999988777877777643
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.74 E-value=2.2e-16 Score=121.43 Aligned_cols=180 Identities=18% Similarity=0.221 Sum_probs=132.6
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--------ceEEEEeCCC-Ccc-------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--------NLQCTVEGPR-GGI------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~-~~~------------- 59 (216)
.+|.+++++++|++.|+|++|+.||+++|+|+.|..|.+|...-. ..++...... ...
T Consensus 41 ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS 120 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWS 120 (1081)
T ss_pred CCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccC
Confidence 468889999999999999999999999999999999999986532 1122111100 000
Q ss_pred -------------------------------cCcEEEEEECCCcceeeee---eccCCCeeEEEEcCCC-----cEEEEe
Q 043942 60 -------------------------------EDSTVWMWNADRGAYLNMF---SGHGSGLTCGDFTTDG-----KTICTG 100 (216)
Q Consensus 60 -------------------------------~~~~v~i~d~~~~~~~~~~---~~~~~~v~~~~~~~~~-----~~l~t~ 100 (216)
.+|+|.+-+-. +++...+ .+.+.+|.+++|+|.. ..+++.
T Consensus 121 ~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 121 PEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 56666665433 3222223 3467899999999953 467777
Q ss_pred cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------Eeee
Q 043942 101 SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHI 167 (216)
Q Consensus 101 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~ 167 (216)
....++.++.+. |+.+..-.. ......|+.+-++|.++..|+.|+.+ ....
T Consensus 200 DW~qTLSFy~Ls-G~~Igk~r~---------------L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 200 DWGQTLSFYQLS-GKQIGKDRA---------------LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQD 263 (1081)
T ss_pred eccceeEEEEec-ceeeccccc---------------CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccc
Confidence 777777777766 544432222 45566788999999999999999877 2345
Q ss_pred CCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.+|+.+...|++++++.|..||+|-.|++..
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 7999999999999999999999999998753
No 171
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2.2e-15 Score=108.16 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=126.8
Q ss_pred CEEEEEcCCC--cEEEEECCCCceEEEEeCCCCcc------------cCcEEEEEECCCcceeeeeec---cCCCeeEEE
Q 043942 27 QLLASGGFHG--LVQNRDTSSRNLQCTVEGPRGGI------------EDSTVWMWNADRGAYLNMFSG---HGSGLTCGD 89 (216)
Q Consensus 27 ~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~------------~~~~v~i~d~~~~~~~~~~~~---~~~~v~~~~ 89 (216)
.++|..+.+. .+++.++..+..+..+..+..-. -...|+|||+++-+.++++.. +...+..++
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 4555555443 48888888887777777666543 444599999999988887754 334566666
Q ss_pred EcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942 90 FTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---- 163 (216)
Q Consensus 90 ~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---- 163 (216)
+++.+.+++.-+ ..|.|.+||+.+-+....+.. |.+.+-+++|+++|.+||++++.|+|
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a---------------H~~~lAalafs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA---------------HKGPLAALAFSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEcccceeeeEEEe---------------cCCceeEEEECCCCCEEEEeccCceEEEEE
Confidence 666677887533 568999999999999999987 99999999999999999999999998
Q ss_pred -------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 164 -------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 164 -------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
-.....|.+++|+|++++|++.|..++|++|.++...
T Consensus 202 ~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 202 SVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 1113579999999999999999999999999998644
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=3e-16 Score=110.97 Aligned_cols=169 Identities=19% Similarity=0.327 Sum_probs=130.8
Q ss_pred cceEEEEEc-------cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Ccc------------------cCcEEEEE
Q 043942 15 DSFSSLAFS-------TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GGI------------------EDSTVWMW 67 (216)
Q Consensus 15 ~~v~~~~~s-------~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~------------------~~~~v~i~ 67 (216)
..|+..+|- |+..++|+.+.+.-|++||.-+|+....+..-. ..+ .++.|+++
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvF 184 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVF 184 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEe
Confidence 467777775 667899999999999999999998776664311 111 78899999
Q ss_pred EC-CCcceeeee-------eccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 68 NA-DRGAYLNMF-------SGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 68 d~-~~~~~~~~~-------~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
|+ +.|+....+ .+..+.+.+++|+|. ...++.|+.-..+-++.-..+.++..+.. |
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg---------------h 249 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG---------------H 249 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc---------------c
Confidence 99 555432221 133677899999994 55899999999999999888888888876 9
Q ss_pred ecCeEEEEeCCCCcEEEEeccc-CeE---------------EeeeC-CEE--EEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVD-GKV---------------DGHID-AIQ--SLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~-~~i---------------~~~~~-~i~--~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.+.|+.++|.++|+.|++|... ..| ..|.. .-. -+...|++++|++|+.||.|++||++.
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 9999999999999999999863 333 22322 222 345578999999999999999999988
No 173
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=1.3e-16 Score=112.35 Aligned_cols=115 Identities=22% Similarity=0.314 Sum_probs=103.4
Q ss_pred eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc-
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK- 152 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 152 (216)
++..+.+|.+.+++++.+ +.++++|+.|-+|++||+++......+-. |.+.|+++.|.+...
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~---------------HagsitaL~F~~~~S~ 97 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS---------------HAGSITALKFYPPLSK 97 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec---------------cccceEEEEecCCcch
Confidence 456678999999999985 89999999999999999999888887776 999999999998765
Q ss_pred -EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 153 -YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 153 -~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
.|++|++||.| .+|.+.|+.++.+|.|++-++.+.|+.+++||+-+++....+
T Consensus 98 shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 98 SHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred hheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 89999999998 788999999999999999999999999999999988765443
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=112.87 Aligned_cols=176 Identities=15% Similarity=0.235 Sum_probs=127.2
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCce------------EEEEeCCCCcc------------------------
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL------------QCTVEGPRGGI------------------------ 59 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~------------~~~~~~~~~~~------------------------ 59 (216)
-...+.|+|||..|++-+.|..+++|++..... ...+....+..
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 456789999999999999999999999864211 11111111111
Q ss_pred cCcEEEEEECCCcceeeeeec--cCC---CeeEEEEcCCCcEEEEecCCCeEEEEeC-CCCceeEEeecccccccccceE
Q 043942 60 EDSTVWMWNADRGAYLNMFSG--HGS---GLTCGDFTTDGKTICTGSDNATLSIWNP-KGGENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~t~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~ 133 (216)
.+..|++||.-+|+....+++ |.. ...++.|+|||.+|..| ..+.|+++|+ +.|..-.....-..
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~-------- 201 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTK-------- 201 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhc--------
Confidence 788899999999987766654 333 34689999999999876 5678999999 55543222211000
Q ss_pred EEeeeecCeEEEEeCCCCc-EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEcc
Q 043942 134 ICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIA 197 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~ 197 (216)
-..+..+.+.+++|+|... .++.++....+ .+|.+.|+.+.|+++|+.|.+|+. |-.|..||++
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 0112456788999999554 77887776655 689999999999999999999876 7899999998
Q ss_pred ccc
Q 043942 198 EFR 200 (216)
Q Consensus 198 ~~~ 200 (216)
..+
T Consensus 282 ~~~ 284 (406)
T KOG2919|consen 282 YSR 284 (406)
T ss_pred hcc
Confidence 754
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-15 Score=103.17 Aligned_cols=180 Identities=16% Similarity=0.212 Sum_probs=124.9
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce------EEEEeCC--C-----------------Ccc-
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL------QCTVEGP--R-----------------GGI- 59 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~------~~~~~~~--~-----------------~~~- 59 (216)
++...++|.++|+.++|. ..+|++|+ ||.|+-|..+.... +.+...+ . +.+
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 455668999999999998 35677777 69999998654322 1111111 1 111
Q ss_pred ---cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 60 ---EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 60 ---~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
.|+.++-||+++|+..+++++|+..+.++.-......+++|+.||++++||.++++.++.+.......-.+ .
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR-----p 205 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR-----P 205 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC-----c
Confidence 89999999999999999999999999999986667789999999999999999999988887532211111 0
Q ss_pred eeecCeEEEEeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 137 SLYDGVTCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
....-|.+++- +..++++|+....- ..-..++..+.| ....++++++.+.|.-|.+.
T Consensus 206 ~~g~wigala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 206 DWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLVDF--VDDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ccCceeEEEec--cCceEEecCCCceeEEeccCCCceEEEecccceeEeee--ecceEEEeccccceeeeeec
Confidence 01223444443 44577776554432 333456666677 44567788877888888764
No 176
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.73 E-value=2e-15 Score=104.18 Aligned_cols=154 Identities=14% Similarity=0.193 Sum_probs=102.0
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec-cCCCeeEEEEcCCCcEE
Q 043942 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG-HGSGLTCGDFTTDGKTI 97 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l 97 (216)
.+.|+|+|++|+.-..- -.| .+++... ....++..+.+. .+...+.- ..++|.+++|+|+++.+
T Consensus 10 ~~~W~~~G~~l~~~~~~----~~~-~~~ks~~---------~~~~l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQT----RVD-KSGKSYY---------GEFELFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEF 74 (194)
T ss_pred EEEecccCCEEEEEEEE----eec-cCcceEE---------eeEEEEEEecCC-CccceeeccCCCceEEEEECcCCCEE
Confidence 68899999887754420 000 0111100 122333333332 33344432 34579999999999987
Q ss_pred EEe--cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc---CeE---------
Q 043942 98 CTG--SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD---GKV--------- 163 (216)
Q Consensus 98 ~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---~~i--------- 163 (216)
++. ..++.+.+||++ ++.+..+ ....++.+.|+|+|+++++++.+ |.+
T Consensus 75 avi~g~~~~~v~lyd~~-~~~i~~~-----------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~ 136 (194)
T PF08662_consen 75 AVIYGSMPAKVTLYDVK-GKKIFSF-----------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK 136 (194)
T ss_pred EEEEccCCcccEEEcCc-ccEeEee-----------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence 554 467899999997 6666655 34677899999999999998754 445
Q ss_pred ---EeeeCCEEEEEEecCCCeEEEEeC------CCcEEEEEcccccceeecC
Q 043942 164 ---DGHIDAIQSLSVSAIRESLVSVSV------DGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 164 ---~~~~~~i~~~~~~~~~~~l~s~~~------d~~v~vw~~~~~~~~~~~~ 206 (216)
......++.++|+|+|++|++++. |+.++||++. ++.+.+.+
T Consensus 137 ~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 137 KISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 223346799999999999998764 7899999985 55555443
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.7e-16 Score=120.43 Aligned_cols=184 Identities=16% Similarity=0.249 Sum_probs=145.1
Q ss_pred CCCceeEEeeccccceEEEEEccCC---CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDG---QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------- 59 (216)
.+|++++.+.+|..++..+.+.|.. .++.+++.||.|++||...+.+++++.......
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 5788999999999999999999854 478899999999999999998887775433211
Q ss_pred ------------------------------------------------------cCcEEEEEECCCcceeee----eecc
Q 043942 60 ------------------------------------------------------EDSTVWMWNADRGAYLNM----FSGH 81 (216)
Q Consensus 60 ------------------------------------------------------~~~~v~i~d~~~~~~~~~----~~~~ 81 (216)
.+..+.+|+..++..... -..|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 455566777665431111 1136
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC--C--ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKG--G--ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
...+++.+++|+++++++|..||.|.+|.--. . .....+.. |.++|++++|+++|.+|++|
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW---------------H~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW---------------HHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe---------------cccccceeEEecCCceEeec
Confidence 66689999999999999999999999997442 1 22344444 88899999999999999999
Q ss_pred cccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 158 CVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 158 ~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+.++.+ ..-.++|..+.++||+.+.+....|+.|.+-...+..
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 999988 2335789999999999999999999999998875543
No 178
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.71 E-value=6.4e-17 Score=115.79 Aligned_cols=146 Identities=23% Similarity=0.303 Sum_probs=120.1
Q ss_pred CceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc-------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI-------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~-------------~~~~v~i~ 67 (216)
..+++.+.--.+.|.++.|+|-. ..|++|+.|+.|.+||++...+++.+.. ....+ +|..++.|
T Consensus 177 ~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~ 256 (433)
T KOG0268|consen 177 DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTY 256 (433)
T ss_pred CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceeh
Confidence 34667777677889999999954 6788998999999999999877765432 11111 89999999
Q ss_pred ECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 68 NADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 68 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
|++. ..++....+|.++|.+++|+|.|+.+++||.|++|++|..+.+.....+... .-..|.++.
T Consensus 257 DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--------------RMq~V~~Vk 322 (433)
T KOG0268|consen 257 DMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--------------RMQHVFCVK 322 (433)
T ss_pred hhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--------------hhheeeEEE
Confidence 9985 4677888999999999999999999999999999999999987765544321 346799999
Q ss_pred eCCCCcEEEEecccCeE
Q 043942 147 WPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i 163 (216)
|+.|.+++++|++|+.+
T Consensus 323 ~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 323 YSMDSKYIISGSDDGNV 339 (433)
T ss_pred EeccccEEEecCCCcce
Confidence 99999999999999998
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=5.4e-17 Score=122.03 Aligned_cols=163 Identities=18% Similarity=0.271 Sum_probs=120.2
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG 84 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 84 (216)
.+.+.|.||.+-|+|++|+.+|.+|++|+.|-.+.|||.-..+.+.. .-.+|...
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-------------------------I~TgHtaN 95 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-------------------------ISTGHTAN 95 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee-------------------------eecccccc
Confidence 34567899999999999999999999999888888887654333222 12479999
Q ss_pred eeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccC
Q 043942 85 LTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDG 161 (216)
Q Consensus 85 v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~ 161 (216)
|.++.|-| +.+.+++|..|..|+++|+...+.-..-.. .........-|...|..++-.|++ ..+.++++||
T Consensus 96 IFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~-----~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG 170 (758)
T KOG1310|consen 96 IFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG-----MEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG 170 (758)
T ss_pred eeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----ccchhhhhhhhhhhhhheecCCCCCceEEEecCCc
Confidence 99999998 567899999999999999985321110000 000001111278889999999988 7899999999
Q ss_pred eE------Eee------------------eCCEEEEEEecCC-CeEEEEeCCCcEEEEEcc
Q 043942 162 KV------DGH------------------IDAIQSLSVSAIR-ESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 162 ~i------~~~------------------~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~ 197 (216)
.+ ..| --...++..+|.. .+|+.|+.|.-.++||.+
T Consensus 171 tirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 171 TIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 99 111 1245788889865 578899999999999954
No 180
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=7.9e-16 Score=108.60 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=130.6
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG 84 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 84 (216)
++..+++.|...|+++.|+|..+.|++|+.|..-++|...++. +.++...+..++..
T Consensus 46 ~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~-----------------------~WkptlvLlRiNrA 102 (361)
T KOG1523|consen 46 EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG-----------------------TWKPTLVLLRINRA 102 (361)
T ss_pred eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC-----------------------eeccceeEEEeccc
Confidence 5678899999999999999999999999999999988874322 12344456668899
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee----EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENF----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
.+++.|+|.++.+++|+..+.|.||-++....= +.-.. +...|+++.|+|++-++++|+.|
T Consensus 103 At~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkP---------------irStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 103 ATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKP---------------IRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCc---------------cccceeeeeccCCcceecccccC
Confidence 999999999999999999999999887744321 11112 67889999999999999999999
Q ss_pred CeE--------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 161 GKV--------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 161 ~~i--------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+.. ....+.+..+.|+|+|..|+-.+.|.++.+=|...+.
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 876 2445789999999999999999999999998877654
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=1.8e-16 Score=114.85 Aligned_cols=167 Identities=21% Similarity=0.328 Sum_probs=127.4
Q ss_pred ccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 14 KDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 14 ~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
..+|..+.|.++.. .||||+.|..|++|.++.++.-. .+..| .....+..|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~---------~~~~V--------~y~s~Ls~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG---------GDMKV--------EYLSSLSRHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC---------CceeE--------EEeecccCCcceeEEEEEcC
Confidence 35899999999765 99999999999999887654211 00111 23456778999999999999
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceeEEeecc-cccc---cccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENFHAIRRS-SLEF---SLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----- 163 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----- 163 (216)
+|..|++|+++|.+.+|-...-... ... .... ....+....+|...+..++|+|++.++++++.|..+
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv 152 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDV 152 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEe
Confidence 9999999999999999987641111 110 1111 112234455688999999999999999999999877
Q ss_pred ---------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 164 ---------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 164 ---------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
..|...+..++|.|.++++++-+.|...+.+.+...+
T Consensus 153 ~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 153 HAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeee
Confidence 6788899999999999999999999877777765433
No 182
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=4.2e-15 Score=115.05 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=123.5
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCC---CcEEEEECCCCce--EEEEeCCCCcc--------------cCcE-
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNL--QCTVEGPRGGI--------------EDST- 63 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~--~~~~~~~~~~~--------------~~~~- 63 (216)
|...+.+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.++.... .++.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 193 GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcE
Confidence 33455677788889999999999999987654 3699999988753 22233222211 3454
Q ss_pred -EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeec
Q 043942 64 -VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 64 -v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
|++||+.++.. ..+..+...+....|+|||+.|+.++ .++...+|++... .....+. +..
T Consensus 273 ~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~----------------~~~ 335 (429)
T PRK01742 273 NIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG----------------GRG 335 (429)
T ss_pred EEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec----------------CCC
Confidence 44556665543 45566777788999999999877554 6778888876532 2222221 222
Q ss_pred CeEEEEeCCCCcEEEEecccCeE---------E--eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc--cccceeecCC
Q 043942 141 GVTCLSWPGTSKYLVTGCVDGKV---------D--GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA--EFRRATKAPS 207 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~~i---------~--~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~--~~~~~~~~~~ 207 (216)
....|+|+|++++..+.++.+ . ........+.|+|+|++|+.++.++...+|.+. +++....++.
T Consensus 336 --~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred --CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 356799999999887766544 0 001123567899999999999999988888864 3555555544
Q ss_pred c
Q 043942 208 Y 208 (216)
Q Consensus 208 ~ 208 (216)
+
T Consensus 414 ~ 414 (429)
T PRK01742 414 S 414 (429)
T ss_pred C
Confidence 3
No 183
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.9e-15 Score=107.62 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=135.2
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCc----------c-----cC--cEEEEEECCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGG----------I-----ED--STVWMWNADR 71 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~----------~-----~~--~~v~i~d~~~ 71 (216)
.++|..+... ...|++|-.+|.+.+|....+. ....-.++... + .. ..+.+||+++
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 3455555443 2368888899999999988443 22211111110 0 33 7789999998
Q ss_pred cceeeeeeccC---------CCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeee
Q 043942 72 GAYLNMFSGHG---------SGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 72 ~~~~~~~~~~~---------~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.+++..-+... -.++++.|-+. ...+++++.-+.+++||.+.++ ++..+.. ..
T Consensus 183 ~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~---------------~E 247 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF---------------LE 247 (412)
T ss_pred ceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc---------------cc
Confidence 86665543221 24678889886 8899999999999999999664 5667766 67
Q ss_pred cCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
.+++++...|++++++++...+.+ .+..+.|.++..+|.++++++||.|..|||+|+.+.+.+.+
T Consensus 248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 899999999999999999988877 45568899999999999999999999999999999776665
Q ss_pred cCCcceeE
Q 043942 205 APSYSFKL 212 (216)
Q Consensus 205 ~~~~~~~~ 212 (216)
...-+..-
T Consensus 328 vYvKs~lt 335 (412)
T KOG3881|consen 328 VYVKSRLT 335 (412)
T ss_pred hhhhcccc
Confidence 44433333
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=2.6e-16 Score=118.11 Aligned_cols=169 Identities=16% Similarity=0.255 Sum_probs=125.0
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEEE
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWMW 67 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i~ 67 (216)
-|...|.|+.|+.+...+.+++.+..+.-||+.+. ....+..++..+ .||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 36677889999988776666665444444554432 222111111100 67777776
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+- .++....+.+|.+.+.+-.|+|+|.-|++++.||.|++|. ++|....++.. ...+|+|++|
T Consensus 91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q---------------~~~~v~c~~W 153 (737)
T KOG1524|consen 91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ---------------NEESIRCARW 153 (737)
T ss_pred cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh---------------cCceeEEEEE
Confidence 53 3556667889999999999999999999999999999998 44665555543 6678999999
Q ss_pred CCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 148 PGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.|+.+-++-+..+... .+|.+-|.++.|++....+++|++|-..+|||-..
T Consensus 154 ~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 154 APNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred CCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence 9988766555444433 89999999999999999999999999999999653
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=4.2e-15 Score=103.84 Aligned_cols=145 Identities=14% Similarity=0.229 Sum_probs=106.5
Q ss_pred ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCC-c--c------------------cCc
Q 043942 5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-G--I------------------EDS 62 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~--~------------------~~~ 62 (216)
.....|-+|..+|+.++|...+ +.||+.+.||.||++|++..+....+..... . . ...
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 3466788999999999999965 6899999999999999998765554433222 1 1 678
Q ss_pred EEEEEECCC-cceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 63 TVWMWNADR-GAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 63 ~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
.|.+.|++. ..++..+++|.+.|+.++|.| ....|+|++.|..+.+||+.+.-... ...+-+. -.-..
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-~~dPila---------y~a~~ 336 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-GEDPILA---------YTAGG 336 (364)
T ss_pred eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-CCCchhh---------hhccc
Confidence 899999995 467889999999999999999 46789999999999999998543200 0000000 00456
Q ss_pred CeEEEEeCC-CCcEEEEecc
Q 043942 141 GVTCLSWPG-TSKYLVTGCV 159 (216)
Q Consensus 141 ~v~~~~~~~-~~~~l~~~~~ 159 (216)
+|+.+.|++ .+.+++.+..
T Consensus 337 EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 337 EVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eeeeeeecccCCCEEEEEec
Confidence 778888875 4456665543
No 186
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.8e-13 Score=96.77 Aligned_cols=142 Identities=14% Similarity=0.260 Sum_probs=112.5
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCc--c-----------------cCcEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGG--I-----------------EDSTV 64 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~--~-----------------~~~~v 64 (216)
+++.++. -..+|.++.++++ .+++.- ++.|+||... +.+.+..++....+ . .-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 4455554 4568888888875 455554 6789999988 45555555432211 1 66899
Q ss_pred EEEECCCcce--eeeeeccCCCeeEEEEcCCCcEEEEecCCCe-EEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 65 WMWNADRGAY--LNMFSGHGSGLTCGDFTTDGKTICTGSDNAT-LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 65 ~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
.|-|+...+. ...+.+|.+.|.|++.+.+|..+||+|..|+ |++||..+|..++++.... ....
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-------------d~A~ 228 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-------------DRAD 228 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-------------chhe
Confidence 9999875444 4678899999999999999999999999988 8999999999999987533 5678
Q ss_pred eEEEEeCCCCcEEEEecccCeE
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i 163 (216)
|++++|+|++.+|+++++.|++
T Consensus 229 iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeE
Confidence 9999999999999999999998
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=1.2e-15 Score=117.49 Aligned_cols=137 Identities=20% Similarity=0.342 Sum_probs=113.2
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK 95 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 95 (216)
.|+.++|-|||..|+.+. +..+.+||.+.|..++++++|...|.+++|+.||+
T Consensus 14 ci~d~afkPDGsqL~lAA---------------------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---------------------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK 66 (1081)
T ss_pred chheeEECCCCceEEEec---------------------------CCEEEEEeCCCcccccccccccceEEEEEEccCCc
Confidence 799999999998777665 34567778888888899999999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------E
Q 043942 96 TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------D 164 (216)
Q Consensus 96 ~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------~ 164 (216)
.+++|+.|+.|.+|.-.-.- ...+. |.+.|.|+.|+|-...+++++-...- .
T Consensus 67 rFASG~aDK~VI~W~~klEG-~LkYS----------------H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~ 129 (1081)
T KOG1538|consen 67 RFASGSADKSVIIWTSKLEG-ILKYS----------------HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH 129 (1081)
T ss_pred eeccCCCceeEEEecccccc-eeeec----------------cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh
Confidence 99999999999999865222 22222 89999999999999999888654322 3
Q ss_pred eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 165 GHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 165 ~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
.....+.+++|..||++|+.|-.+|+|.+-+-
T Consensus 130 kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 130 KSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred hhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 33467899999999999999999999999764
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=3.1e-15 Score=114.61 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=127.5
Q ss_pred eeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCce----------------EEEEeCCCCcc------cCc
Q 043942 6 WASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNL----------------QCTVEGPRGGI------EDS 62 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~----------------~~~~~~~~~~~------~~~ 62 (216)
-+..+.+|.+.|+++.|+| +..+||||+.|..|+||.+..+-. ...+..|.... ..+
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4556778999999999999 567899999999999999984311 12223333221 789
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecC
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
++++||+.+++.+..+.+|...|.+..|+.||..+++++.|+.|++||.+. ++.++.... |.+.
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~---------------H~~~ 215 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEG---------------HGGM 215 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccc---------------cccc
Confidence 999999999999999999999999999999999999999999999999985 455555543 3221
Q ss_pred -eEEEEeCCCCcEEEEecccC-eE-------------------EeeeCCEEEEEEecCCCeEEE-EeCCCcEEEEEcccc
Q 043942 142 -VTCLSWPGTSKYLVTGCVDG-KV-------------------DGHIDAIQSLSVSAIRESLVS-VSVDGTARVFEIAEF 199 (216)
Q Consensus 142 -v~~~~~~~~~~~l~~~~~~~-~i-------------------~~~~~~i~~~~~~~~~~~l~s-~~~d~~v~vw~~~~~ 199 (216)
-..+.|--+-..|++.+.+. .+ ....-.|.--.|+||.++|+- |-.+.++..+.+...
T Consensus 216 rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~ 295 (1012)
T KOG1445|consen 216 RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR 295 (1012)
T ss_pred hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence 22344444333343333221 11 112234455567888887665 445788888887665
Q ss_pred cc
Q 043942 200 RR 201 (216)
Q Consensus 200 ~~ 201 (216)
++
T Consensus 296 qP 297 (1012)
T KOG1445|consen 296 QP 297 (1012)
T ss_pred Cc
Confidence 43
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.64 E-value=4.6e-13 Score=102.61 Aligned_cols=183 Identities=28% Similarity=0.473 Sum_probs=141.9
Q ss_pred eeEEeecccc-ceEEEEE-ccCCC-EEEEEcC-CCcEEEEECCC-CceEEEEeCCCCcc----------------c-CcE
Q 043942 6 WASEILGHKD-SFSSLAF-STDGQ-LLASGGF-HGLVQNRDTSS-RNLQCTVEGPRGGI----------------E-DST 63 (216)
Q Consensus 6 ~~~~~~~h~~-~v~~~~~-s~~~~-~l~s~~~-d~~v~vwd~~~-~~~~~~~~~~~~~~----------------~-~~~ 63 (216)
....+..+.. .+..+.+ ++++. .++..+. |+.+++|+... ......+..|...+ . ++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 4555555433 6777777 78887 5555455 99999999998 66666666655433 3 899
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeE-EeecccccccccceEEEeeeecC
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFH-AIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
+++|+..++..+..+.+|...+.+++|+|++. .+++++.|+.+++||...+.... .+.. |...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~~ 244 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG---------------HSDS 244 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC---------------CCcc
Confidence 99999999888888988999999999999998 55566999999999988776666 3443 5555
Q ss_pred eEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
. ...|+|++.++++++.++.+ ..|...+.++.|+|++..+++++.|+.+++|+.........
T Consensus 245 ~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 245 V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 3 33899999888888888877 14678999999999888888888898899998877654443
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.63 E-value=3.6e-13 Score=103.23 Aligned_cols=177 Identities=32% Similarity=0.559 Sum_probs=143.0
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCC-------------Cc-c------cCcEEEEE
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPR-------------GG-I------EDSTVWMW 67 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~-------------~~-~------~~~~v~i~ 67 (216)
.+..|...+.++.+.+.+..++.++.|+.+.+|+..... ....+.... .. . .++.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456789999999999999999999999999999998875 443333311 11 1 48899999
Q ss_pred ECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecC-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 68 NADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 68 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
|... ......+..|...|..++|+|+++.+++++. |+.+++|++..+..+..+.. |...+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~v~~~ 204 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG---------------HTDPVSSL 204 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---------------CCCceEEE
Confidence 9998 7788888899999999999999998888885 99999999998777777776 88999999
Q ss_pred EeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 146 SWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 146 ~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
+|+|++. .+++++.|+.+ ..|.... -..|+|++.++++++.|+.+++|++.....
T Consensus 205 ~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 9999998 55554777766 1222332 227999998899999999999999987654
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=4.6e-15 Score=111.70 Aligned_cols=175 Identities=15% Similarity=0.184 Sum_probs=134.2
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT 86 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~ 86 (216)
..++..|.+.|..++|.|....|++++.|+.+++|+++....- +...-+++.++++|.++|.
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s------------------~~~~~epi~tfraH~gPVl 348 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKS------------------AEKDVEPILTFRAHEGPVL 348 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCc------------------cccceeeeEEEecccCceE
Confidence 3477789999999999999899999999999999998431100 0011357788999999999
Q ss_pred EEEEcCCCcEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 87 CGDFTTDGKTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
|+++.+++..+.+|+.||+|+.|++-...-. -.... ........+|.+.+..+++++....|++++.||++
T Consensus 349 ~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp------~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 349 CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP------SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL 422 (577)
T ss_pred EEEecCCceEEEeeccCceeeeeccCCCCCcccccCc------chhccceeccccceeeeeecccccceeeecCCceEEe
Confidence 9999999999999999999999976522110 00000 00112234599999999999999999999999988
Q ss_pred ---------------------------------------------------------------EeeeCCEEEEEEecCCC
Q 043942 164 ---------------------------------------------------------------DGHIDAIQSLSVSAIRE 180 (216)
Q Consensus 164 ---------------------------------------------------------------~~~~~~i~~~~~~~~~~ 180 (216)
......+..+.++|.+.
T Consensus 423 w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~ 502 (577)
T KOG0642|consen 423 WEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD 502 (577)
T ss_pred eccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC
Confidence 11124567788899999
Q ss_pred eEEEEeCCCcEEEEEcccccceeec
Q 043942 181 SLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 181 ~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
+.+++..|+.|+++|..+++.+...
T Consensus 503 ~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 503 ITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred eeEecccCCceecccccccccchhe
Confidence 9999999999999999988866543
No 192
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=3.5e-13 Score=104.27 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=117.5
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEc---CCCcEEEEECCCCceEEE--EeCCCCcc----------------cCc
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGG---FHGLVQNRDTSSRNLQCT--VEGPRGGI----------------EDS 62 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---~d~~v~vwd~~~~~~~~~--~~~~~~~~----------------~~~ 62 (216)
|...+.+..+...+.+.+|+|||+.|+..+ .+..+.+|++.+++.... +..+.... .+.
T Consensus 188 g~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 188 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred CCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCc
Confidence 333455556677899999999999988654 245799999988754332 22221111 223
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC-C--eEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN-A--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.|++||+.+++... +..+...+....|+|||+.|+..+.+ + .|+.+|+.+++.. .+.. ..
T Consensus 268 ~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~---------------~~ 330 (429)
T PRK03629 268 NLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW---------------EG 330 (429)
T ss_pred EEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec---------------CC
Confidence 68899998876544 33344567899999999988776654 3 4555677665433 2322 23
Q ss_pred cCeEEEEeCCCCcEEEEecccC---eE----------E--eeeCCEEEEEEecCCCeEEEEeCCCc---EEEEEcccccc
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDG---KV----------D--GHIDAIQSLSVSAIRESLVSVSVDGT---ARVFEIAEFRR 201 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~---~i----------~--~~~~~i~~~~~~~~~~~l~s~~~d~~---v~vw~~~~~~~ 201 (216)
.......|+|+|++++..+.++ .+ . ..........|+|||++|+.++.++. +.++++. ++.
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~ 409 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRF 409 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCC
Confidence 3455788999999887755432 12 0 00112346789999999998887764 5667763 333
Q ss_pred eeecC
Q 043942 202 ATKAP 206 (216)
Q Consensus 202 ~~~~~ 206 (216)
...++
T Consensus 410 ~~~l~ 414 (429)
T PRK03629 410 KARLP 414 (429)
T ss_pred eEECc
Confidence 34343
No 193
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.62 E-value=1.2e-14 Score=101.56 Aligned_cols=178 Identities=14% Similarity=0.202 Sum_probs=118.3
Q ss_pred EeeccccceEEEEEcc-CCCEEEEEcCCC-------cEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeee-
Q 043942 9 EILGHKDSFSSLAFST-DGQLLASGGFHG-------LVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS- 79 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~- 79 (216)
.|..|.+.|+.++-+| +.+.|+|+-.+- .+.||.+....... +..+-+++..+.
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-----------------~~~tlE~v~~Ldt 120 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-----------------NSSTLECVASLDT 120 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-----------------ccchhhHhhcCCH
Confidence 4556778899999998 445666654321 13344433211000 000112233333
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCC--CCcEEEE
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG--TSKYLVT 156 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~ 156 (216)
.+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+..... ..+....++-+|+| +++.+++
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s----------~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES----------AEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccc----------ccccceecccccCCCCccceEEE
Confidence 3446899999999999998875 88999999998766 444433111 11456677888988 7777776
Q ss_pred ecccCeE--------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEccccc-ceeecCCcceeEEE
Q 043942 157 GCVDGKV--------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFR-RATKAPSYSFKLFF 214 (216)
Q Consensus 157 ~~~~~~i--------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~-~~~~~~~~~~~~~~ 214 (216)
.+....- .+|...|..+.|+|+.+ +|++|+.||.|++||.+..+ ++..++.|+--++.
T Consensus 190 t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 190 TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 5543222 78889999999999976 57899999999999999754 55678888766553
No 194
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.62 E-value=3.1e-14 Score=98.24 Aligned_cols=103 Identities=17% Similarity=0.305 Sum_probs=77.0
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
.++|.+++|+|+|+.||....+ .+..|.+||++ ++.+..+. ...+..+.|+|+
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~------------------------~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~ 111 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGS------------------------MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPD 111 (194)
T ss_pred CCceEEEEECcCCCEEEEEEcc------------------------CCcccEEEcCc-ccEeEeec--CCCceEEEECCC
Confidence 4579999999999988765421 23345555554 44444443 456789999999
Q ss_pred CcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 94 GKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 94 ~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
|+++++++. .|.+.+||+++.+.+.... + ..+..++|+|+|++++++...
T Consensus 112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----------------~-~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----------------H-SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCEEeeccc----------------c-CcEEEEEEcCCCCEEEEEEec
Confidence 999999874 4679999999888877764 3 347899999999999998754
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1.3e-15 Score=112.30 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=128.8
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
.|..+..++.| ..|..+.|-|..-+|++++..|.++--|+.+|+.+..+....+.. .+|+|.+
T Consensus 199 ~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 199 NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEe
Confidence 35566667665 578899999988899999999999999999998887765433322 8999999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
|.....+++..+..|.++|.++++.++|++++|++.|+.++|||++....+.++.. ..+...++
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----------------p~~a~~ls 341 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----------------PHPASNLS 341 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----------------CCCccccc
Confidence 99999999999999999999999999999999999999999999998887766652 34455566
Q ss_pred eCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942 147 WPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDG 189 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~ 189 (216)
+|..|...++-+..=.+ ....++|.++.|+|-...|-.|..-|
T Consensus 342 ~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 342 LSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 66554332222221111 12235899999999766655554443
No 196
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=6.2e-14 Score=100.81 Aligned_cols=147 Identities=16% Similarity=0.317 Sum_probs=104.3
Q ss_pred eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942 11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDF 90 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 90 (216)
.+| .+|++++|++||..+++++. .+..|.+||..++..+.....-.+.++-+.|
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~-------------------------gsssi~iWdpdtg~~~pL~~~glgg~slLkw 246 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASF-------------------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKW 246 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeeccc-------------------------CcceEEEEcCCCCCcccccccCCCceeeEEE
Confidence 355 68999999999999999986 3455666666666554433334466889999
Q ss_pred cCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeE------
Q 043942 91 TTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKV------ 163 (216)
Q Consensus 91 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i------ 163 (216)
+||+.+|..+.-|+..++|+............ ..+.|...+|+|+|++|+.. +..-.+
T Consensus 247 SPdgd~lfaAt~davfrlw~e~q~wt~erw~l---------------gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 247 SPDGDVLFAATCDAVFRLWQENQSWTKERWIL---------------GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred cCCCCEEEEecccceeeeehhcccceecceec---------------cCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 99999999999999999996554332222222 44588999999999876543 333333
Q ss_pred ------------------------------EeeeCCEEEEEEecCCCeEEEEeCCC--------cEEEEEccc
Q 043942 164 ------------------------------DGHIDAIQSLSVSAIRESLVSVSVDG--------TARVFEIAE 198 (216)
Q Consensus 164 ------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~--------~v~vw~~~~ 198 (216)
.-..+.+.+++|+|.|++|++.=..+ .|.+||.+.
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 12246789999999999999764332 355677654
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.62 E-value=3.9e-15 Score=107.85 Aligned_cols=125 Identities=17% Similarity=0.209 Sum_probs=101.2
Q ss_pred eeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cE
Q 043942 76 NMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KY 153 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 153 (216)
..+.+|.++|..++|+| +...||+||.|.+|.+|++-.+.....+.. ......+|...|.-+.|+|.. +.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte--------pvv~L~gH~rrVg~V~wHPtA~NV 146 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE--------PVVELYGHQRRVGLVQWHPTAPNV 146 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc--------ceEEEeecceeEEEEeecccchhh
Confidence 34678999999999999 667899999999999999876543332221 112233499999999999964 67
Q ss_pred EEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942 154 LVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 154 l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
|++++.|..+ ..|..-|++++|+.||.+|++.+.|++|||||.++++.+.+-..|
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred HhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 8888888887 458899999999999999999999999999999998877665443
No 198
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.62 E-value=7.7e-15 Score=112.10 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=113.8
Q ss_pred EEEEcc---CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942 19 SLAFST---DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK 95 (216)
Q Consensus 19 ~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 95 (216)
+..|++ ....|+.+..||.|.++|....... + ..+.+.....|.+.|..+.|.|-..
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-------------------~-ee~~lk~~~aH~nAifDl~wapge~ 113 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-------------------L-EERQLKKPLAHKNAIFDLKWAPGES 113 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcc-------------------h-hhhhhcccccccceeEeeccCCCce
Confidence 356665 2357888998888888886543210 1 1223455678999999999999777
Q ss_pred EEEEecCCCeEEEEeCCCCceeEE--eecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE---------
Q 043942 96 TICTGSDNATLSIWNPKGGENFHA--IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV--------- 163 (216)
Q Consensus 96 ~l~t~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i--------- 163 (216)
.|++++.|.++++||++..+.... +.+ |...+.+++|.|.. ..|++|+.||.+
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~G---------------H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGRLNLG---------------HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred eEEEccCCceeeeeeeccceeecceeecc---------------cccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 899999999999999998877654 444 99999999999954 578899999988
Q ss_pred --------------------------------EeeeCCEEE---EEEecCCCeEEEEeC-CCcEEEEEccccccee
Q 043942 164 --------------------------------DGHIDAIQS---LSVSAIRESLVSVSV-DGTARVFEIAEFRRAT 203 (216)
Q Consensus 164 --------------------------------~~~~~~i~~---~~~~~~~~~l~s~~~-d~~v~vw~~~~~~~~~ 203 (216)
..+...|.+ +.+..|...||++|. |+.|+|||++......
T Consensus 179 ~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 179 VDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred hhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 233344444 556688889999887 9999999999765443
No 199
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.8e-13 Score=103.92 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=119.6
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcC---CCcEEEEECCCCceEEEE--eCCCCcc----------------cCc
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGF---HGLVQNRDTSSRNLQCTV--EGPRGGI----------------EDS 62 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~ 62 (216)
|...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++..... .+..... ...
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 4455667778889999999999999888764 468999999887653221 1111000 234
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.|++||+.++.. ..+..+........|+|||+.++..+. + ..|+++|+..+.... +.. ..
T Consensus 271 ~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~---------------~~ 333 (435)
T PRK05137 271 DIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF---------------GG 333 (435)
T ss_pred eEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec---------------CC
Confidence 577888887655 445556666778999999998887663 3 368888987655433 322 33
Q ss_pred cCeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeCC------CcEEEEEccc
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSVD------GTARVFEIAE 198 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~d------~~v~vw~~~~ 198 (216)
..+....|+|+|+.++....++ .+ ......+....|+|||+.|+..+.+ ..+++.++..
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 4456678999999988765432 22 1112245678999999988765542 2577778765
Q ss_pred cc
Q 043942 199 FR 200 (216)
Q Consensus 199 ~~ 200 (216)
..
T Consensus 414 ~~ 415 (435)
T PRK05137 414 RN 415 (435)
T ss_pred Cc
Confidence 43
No 200
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6.7e-14 Score=106.03 Aligned_cols=193 Identities=18% Similarity=0.257 Sum_probs=142.2
Q ss_pred eEEeeccccceEEEEEccCCCE-EEEEcCCCcEEEEECCCCceEEEE----------------------------eCCCC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQL-LASGGFHGLVQNRDTSSRNLQCTV----------------------------EGPRG 57 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~----------------------------~~~~~ 57 (216)
++.| .|...-+.+..+|||+| +|||-+...|++||+....+...- +.|..
T Consensus 45 iQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 45 IQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HHhc-CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 3344 36777889999999997 557778899999999865322111 11110
Q ss_pred cc---------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942 58 GI---------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110 (216)
Q Consensus 58 ~~---------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd 110 (216)
.. ....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|.+||
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 00 667788889999998888887788999999999999999999999999999
Q ss_pred CCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEE
Q 043942 111 PKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSV 175 (216)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~ 175 (216)
.+....+..+.......+.. .......|+++.|+.+|-.+++|..+|.+ .....+|..+.|
T Consensus 204 pR~ksrv~~l~~~~~v~s~p----g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~ 279 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHP----GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDW 279 (703)
T ss_pred chhhhhheeeecccccCCCc----cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecc
Confidence 99888777776533211100 00123459999999999999999999987 344568999999
Q ss_pred ecC--CCeEEEEeCCCcEEEEEcccccceeec
Q 043942 176 SAI--RESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 176 ~~~--~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
.+. ++.++++ ....++|||-.+++....+
T Consensus 280 ~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asi 310 (703)
T KOG2321|consen 280 QDTDQQNKVVSM-DKRILKIWDECTGKPMASI 310 (703)
T ss_pred cccCCCceEEec-chHHhhhcccccCCceeec
Confidence 876 3455555 3567899999988876543
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=1.3e-12 Score=92.50 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=126.8
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------cCcEEEEEECCCc
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------EDSTVWMWNADRG 72 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~~v~i~d~~~~ 72 (216)
...+++|+.|...++.|..+| .+||+.+.-+....-+....+. ..+.|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999998888888655 7999987643322222111111 6788999997777
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccc--------------------------
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSL-------------------------- 125 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~-------------------------- 125 (216)
+++.++. ...+|.++.+.++ .|++. ..+.|+||.+. +.+.++.+.....
T Consensus 86 ~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7877776 5678999999865 34433 35678888877 4444444433110
Q ss_pred ---ccc---ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeE
Q 043942 126 ---EFS---LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESL 182 (216)
Q Consensus 126 ---~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l 182 (216)
... .+.-.....|...|.+++.+.+|..+|+++..|++ -.....|.+++|||++.+|
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL 241 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence 000 00113334589999999999999999999999998 1123579999999999999
Q ss_pred EEEeCCCcEEEEEccccc
Q 043942 183 VSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 183 ~s~~~d~~v~vw~~~~~~ 200 (216)
+++|+.|+++|+.++...
T Consensus 242 avsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEcCCCeEEEEEeecCC
Confidence 999999999999998744
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.59 E-value=1.6e-14 Score=102.78 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=119.4
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe-----------CCCC---cc--cCcEEEEEECCCcceeeeeeccC
Q 043942 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE-----------GPRG---GI--EDSTVWMWNADRGAYLNMFSGHG 82 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-----------~~~~---~~--~~~~v~i~d~~~~~~~~~~~~~~ 82 (216)
-.+|||+|+++|+++.- .+.|-|.++.+..+.+. .... +. .++.|.+|++...+-.-++....
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 46899999999999855 67777877764332111 1110 11 78899999999887777777777
Q ss_pred CCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecc----cccccccce--EEE--------------------
Q 043942 83 SGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRS----SLEFSLNYW--MIC-------------------- 135 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~--~~~-------------------- 135 (216)
..+..+.|+|||+.+ .+...|-.|.+|.+.+.+....-... ...+.+.+. .+.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll 171 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILL 171 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHH
Confidence 889999999999655 56668999999999876543322110 001111100 000
Q ss_pred ---eeeecCeEEEEeCCCCcEEEEecc--cCeE--EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 136 ---TSLYDGVTCLSWPGTSKYLVTGCV--DGKV--DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 136 ---~~~~~~v~~~~~~~~~~~l~~~~~--~~~i--~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
....-..+.+.|+|||+.+++=.. +-.+ ....-.+..++|+|.+++|+.|+.|+++|+-+--+.+
T Consensus 172 ~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 172 KEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 002334567778888887776322 2222 3334578899999999999999999999986644433
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=2.1e-12 Score=97.02 Aligned_cols=174 Identities=14% Similarity=0.209 Sum_probs=112.5
Q ss_pred cceEEEEEccCCCEEEEEcC-CCcEEEEECCC-C---ceEEEEeCCCCcc----------------cCcEEEEEECCCcc
Q 043942 15 DSFSSLAFSTDGQLLASGGF-HGLVQNRDTSS-R---NLQCTVEGPRGGI----------------EDSTVWMWNADRGA 73 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~-~---~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~ 73 (216)
+....++++|++++|++++. ++.|.+|++.+ + +....+.....+. .++.|.+||+++..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 35678999999998888764 78999999964 2 2222222211100 67899999997632
Q ss_pred eeee-----ee-ccCCCeeEEEEcCCCcEEEEecC-CCeEEEEeCCC--Cce--eEEeecccccccccceEEEeeeecCe
Q 043942 74 YLNM-----FS-GHGSGLTCGDFTTDGKTICTGSD-NATLSIWNPKG--GEN--FHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 74 ~~~~-----~~-~~~~~v~~~~~~~~~~~l~t~~~-d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
.+.. .. ........++|+|++++++++.. ++.|.+||++. ++. ...+...+.. . ......
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~--~-------~~~~~~ 230 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD--F-------SDTRWA 230 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc--C-------CCCccc
Confidence 2210 11 12234678999999999988775 89999999974 322 2222210000 0 011223
Q ss_pred EEEEeCCCCcEEEEecc-cCeE--------------Eee---eCCEEEEEEecCCCeEEEEeC-CCcEEEEEcc
Q 043942 143 TCLSWPGTSKYLVTGCV-DGKV--------------DGH---IDAIQSLSVSAIRESLVSVSV-DGTARVFEIA 197 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~-~~~i--------------~~~---~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~ 197 (216)
..+.++|++++++++.. ++.+ ..+ ......+.++|+|++|+++.. +++|.+|++.
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 46889999999998865 4444 111 113457899999999987775 8999999885
No 204
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=3.2e-13 Score=104.57 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=102.7
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCC
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGS 83 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 83 (216)
|+..+.+..+...+.+.+|+|||+.|+..+.+. ....|++||+.+++... +....+
T Consensus 185 G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~-----------------------~~~~I~~~dl~~g~~~~-l~~~~g 240 (427)
T PRK02889 185 GQNAQSALSSPEPIISPAWSPDGTKLAYVSFES-----------------------KKPVVYVHDLATGRRRV-VANFKG 240 (427)
T ss_pred CCCceEeccCCCCcccceEcCCCCEEEEEEccC-----------------------CCcEEEEEECCCCCEEE-eecCCC
Confidence 444555667778899999999999998877432 23446666766665432 332344
Q ss_pred CeeEEEEcCCCcEEE-EecCCCeEEEEe--CCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 84 GLTCGDFTTDGKTIC-TGSDNATLSIWN--PKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~-t~~~d~~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
.....+|+|||+.|+ +.+.++...+|. +..+. ...+.. +........|+|||+.++..+..
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~---------------~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ---------------SSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC---------------CCCCCcCeEEcCCCCEEEEEecC
Confidence 566899999999886 566777755554 44443 333332 33345667899999987765542
Q ss_pred -Ce--E-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcccccc
Q 043942 161 -GK--V-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAEFRR 201 (216)
Q Consensus 161 -~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~~~~ 201 (216)
+. + ...........|+|+|++|+..+.++ .|.+||+.+++.
T Consensus 305 ~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 305 GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 32 2 11112234578999999998776554 699999887653
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.57 E-value=2e-13 Score=106.52 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=122.9
Q ss_pred cccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCce--EEEEe----CCCCcc------------------cCcEEEEE
Q 043942 13 HKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNL--QCTVE----GPRGGI------------------EDSTVWMW 67 (216)
Q Consensus 13 h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~--~~~~~----~~~~~~------------------~~~~v~i~ 67 (216)
-...|.|++|+| +..+++.|..+|.|.+||+..+.. ...+. .|..++ .||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 568899999999999999987654 22211 111111 78889999
Q ss_pred ECCCcce---------------------------------------------------------------eeeeeccCCC
Q 043942 68 NADRGAY---------------------------------------------------------------LNMFSGHGSG 84 (216)
Q Consensus 68 d~~~~~~---------------------------------------------------------------~~~~~~~~~~ 84 (216)
+++.-.. ...+..|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8642100 1122346678
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCe
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGK 162 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~ 162 (216)
|.++.++|-+..++..+.|.++++|... ...++..+.. +.+.+++++|||.. ..|+++..+|.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~---------------~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS---------------SPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh---------------ccceeeeeEEcCcCceEEEEEcCCCc
Confidence 8888888866555444448899999877 5555555554 66779999999966 46777788998
Q ss_pred E----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 163 V----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 163 i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+ ..+......+.|+++|+.|+.|...|++++|++..
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 8 22245566778888999999999999999999964
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=4.4e-13 Score=96.52 Aligned_cols=165 Identities=18% Similarity=0.300 Sum_probs=119.3
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-------------cc----cCcEEEEEECCC----cc
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-------------GI----EDSTVWMWNADR----GA 73 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------------~~----~~~~v~i~d~~~----~~ 73 (216)
-.+..++|++.-..+|++..|-.|++||-.+ +....++.... .. ..+-|++|.... ++
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 3577899999767799999999999999776 22222221111 00 677789997642 12
Q ss_pred e----------eeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 74 Y----------LNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 74 ~----------~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
. +....+| ..|+++.|++||..+++++ .|..|.+||..++..+..... ..+.+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~---------------glgg~ 241 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK---------------GLGGF 241 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---------------CCCce
Confidence 1 1122344 5799999999999999988 678899999999887665543 56778
Q ss_pred EEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.-+.|+||+.+|+++.-|+.. ....+.|...+|+|+|++|+... .|.-++|.+.
T Consensus 242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~ 309 (445)
T KOG2139|consen 242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLT 309 (445)
T ss_pred eeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEEe
Confidence 899999999999999999876 22345899999999998765433 2344555554
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=8.7e-14 Score=101.50 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=106.1
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------cCc
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------EDS 62 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~ 62 (216)
.+.....|...|.++.|+|||+.|++-+.| ..+||+.+++..++......... ..+
T Consensus 178 t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~ 256 (398)
T KOG0771|consen 178 TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGG 256 (398)
T ss_pred hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCC
Confidence 334455799999999999999999999999 99999999985554443211110 223
Q ss_pred EEEEEECCCcc-----eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 63 TVWMWNADRGA-----YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 63 ~v~i~d~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
.|+.||+.... +..+.......|++++.+++|++++.|+.||.|.+++..+.+.++-.+. .
T Consensus 257 ~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~--------------a 322 (398)
T KOG0771|consen 257 GVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE--------------A 322 (398)
T ss_pred ceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh--------------h
Confidence 33333332111 1111111234699999999999999999999999999998888776654 2
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEE
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSV 175 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~ 175 (216)
|..-|+.+.|+|+.+++++.+.+ ++..|+.++.
T Consensus 323 H~~~VT~ltF~Pdsr~~~svSs~-----~~~~v~~l~v 355 (398)
T KOG0771|consen 323 HLGFVTGLTFSPDSRYLASVSSD-----NEAAVTKLAV 355 (398)
T ss_pred heeeeeeEEEcCCcCcccccccC-----CceeEEEEee
Confidence 88899999999999988876544 3444544444
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.6e-12 Score=100.98 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=116.0
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCC---CcEEEEECCCCceEEEE--eCCCCcc----------------cCc
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNLQCTV--EGPRGGI----------------EDS 62 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~ 62 (216)
|...+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++..... .+..... .+.
T Consensus 193 g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 193 GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 44455666777889999999999999987743 46999999887653321 1111111 234
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CCe--EEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.|++||+.+++.. .+..+.......+|+|||+.++..+. ++. |+++|+.+++... +.. ..
T Consensus 273 ~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~---------------~g 335 (433)
T PRK04922 273 EIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF---------------QG 335 (433)
T ss_pred eEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec---------------CC
Confidence 6899999877643 45555555678899999998887663 444 7777777665432 221 22
Q ss_pred cCeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeCC---CcEEEEEccc
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSVD---GTARVFEIAE 198 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~d---~~v~vw~~~~ 198 (216)
......+|+|+|++++..+.++ .+ ..+........|+|||++++..+.+ +.+.++++..
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 3344689999999988764432 22 1112234567999999988876653 4577777754
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=4.4e-13 Score=105.82 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=124.6
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT 91 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 91 (216)
.|...++|.++||+++++|++..||.|.+|.--..+ ........+.-|...|++++|+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~----------------------~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS----------------------DDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccc----------------------cccccceEEEecccccceeEEe
Confidence 477778999999999999999999999999632210 0011223455688899999999
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------
Q 043942 92 TDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------- 163 (216)
Q Consensus 92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------- 163 (216)
++|.+|++|+..+.+-+|.+.+++ .+-++. ..++|..+.++||+.+.+....|..+
T Consensus 261 ~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR---------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 261 SDGAYLLSGGREGVLVLWQLETGK-KQFLPR---------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred cCCceEeecccceEEEEEeecCCC-cccccc---------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 999999999999999999999988 444444 67899999999999999998889887
Q ss_pred -----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 164 -----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 164 -----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
....+-.+.++++|.-+.++-.+..+.|.+||+-+.+.+.+
T Consensus 325 ~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 325 EIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred hhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence 11245568889999777888899999999999988766543
No 210
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=7.4e-14 Score=101.63 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=126.7
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeee-ccCCCe
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS-GHGSGL 85 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~v 85 (216)
.+.+.+|.+-|+++.|+.++++|++|+.|..+++|++...-. -++.+++.... .|...|
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--------------------~k~~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--------------------RKTPKPIGVMEHPHRSNI 108 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--------------------hcCCCCceeccCccccce
Confidence 345678999999999999999999999999998888753211 01234444433 355789
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
.|++|....+.+.+|..+++|..-|+.+.+.+..+.... ..+.|+.+..+|..+.+++.+.++.+
T Consensus 109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~-------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~ 175 (609)
T KOG4227|consen 109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENN-------------NRGDVYHMDQHPTDNTLIVVTRAKLVSF 175 (609)
T ss_pred EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccC-------------cccceeecccCCCCceEEEEecCceEEE
Confidence 999999999999999999999999999998888776311 34589999999999999999999988
Q ss_pred ---------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942 164 ---------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 164 ---------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.........+.|+|.. .+|++.+..+-+-+||.+...
T Consensus 176 ~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 176 IDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred EeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence 1223456778888865 567788888899999987644
No 211
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.9e-12 Score=88.71 Aligned_cols=175 Identities=16% Similarity=0.133 Sum_probs=130.4
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCC----------ceEEEEeCCCCcc-------------cCcEEEEEECCC
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----------NLQCTVEGPRGGI-------------EDSTVWMWNADR 71 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----------~~~~~~~~~~~~~-------------~~~~v~i~d~~~ 71 (216)
..|..-+|+|.+++|+.|..+|.|.+..+.+. ..+-..+.|+.++ .||.|+=|..+.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E 90 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNE 90 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehh
Confidence 35677799999999999999999999988642 2333445666665 789999888653
Q ss_pred cce------eeee--ecc-----CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 72 GAY------LNMF--SGH-----GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 72 ~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
... +... .-| --.|+++...|..+-+++++.|+.++.||+++|+...++.+ |
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG---------------H 155 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG---------------H 155 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC---------------C
Confidence 211 1111 111 23588999999888888888999999999999999999998 9
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE-----------------------Eee-eCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV-----------------------DGH-IDAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i-----------------------~~~-~~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
.+.+-++.-......+++|++||.+ ..| ..+|-+++- +..+|+.|+ ...+.+|
T Consensus 156 tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslw 232 (325)
T KOG0649|consen 156 TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLW 232 (325)
T ss_pred cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEE
Confidence 9999999986666778999999998 111 234555554 556777554 6789999
Q ss_pred EcccccceeecCC
Q 043942 195 EIAEFRRATKAPS 207 (216)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (216)
++++.++...+|.
T Consensus 233 hLrsse~t~vfpi 245 (325)
T KOG0649|consen 233 HLRSSESTCVFPI 245 (325)
T ss_pred eccCCCceEEEec
Confidence 9999887665543
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-12 Score=106.94 Aligned_cols=175 Identities=13% Similarity=0.111 Sum_probs=118.3
Q ss_pred CCceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH 81 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 81 (216)
.|.++..+..|...|..++.++.. .+|+|||.||+|++||......- ..+.+...++...
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------------------~~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------------------GGSARSELTYSPE 1097 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------------------cceeeeeEEEecc
Confidence 578899999999999999998754 99999999999999998653311 0011222233335
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE-EeCC-CCc-EEEEec
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL-SWPG-TSK-YLVTGC 158 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~-~l~~~~ 158 (216)
...+.++...+.+..+|.++.||.|.+.+++-....+.........+. ...+.+.++ ++.. .+. .++.+.
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~-------~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNL-------KKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccc-------cCCCceEEeecccccccceeEEEEE
Confidence 677899999999999999999999999998852111100000000000 022223332 3322 233 555565
Q ss_pred ccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 159 VDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 159 ~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
..+.+ ....+.|++++.+|.+++++.|+..|.+.+||++=+.++.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence 55555 3445789999999999999999999999999998655443
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=7.9e-14 Score=104.86 Aligned_cols=104 Identities=21% Similarity=0.317 Sum_probs=85.1
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG 84 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 84 (216)
.++..+.--.+.|+..+|+|||++||+.+.||.+||+|..+.+ .+..++.--+.
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--------------------------Llg~mkSYFGG 334 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--------------------------LLGVMKSYFGG 334 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH--------------------------HHHHHHhhccc
Confidence 3445555456689999999999999999988888887765443 23334444577
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
..|++|+|||++|++|+.|.-|.||.+...+.+..-.. |...|..++|+|
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG---------------HkSWVs~VaFDp 384 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG---------------HKSWVSVVAFDP 384 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc---------------cccceeeEeecc
Confidence 99999999999999999999999999999988877766 999999999986
No 214
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=1.2e-11 Score=92.83 Aligned_cols=183 Identities=12% Similarity=0.105 Sum_probs=114.8
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCC-Cce--EEEEeCCCCcc----------------cCcEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSS-RNL--QCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~-~~~--~~~~~~~~~~~----------------~~~~v~ 65 (216)
.++++. +.+....++++|++++|++++ .++.|.+|++.. +.. .........+. .++.|.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 445554 345677899999999887654 578899999873 332 22222111111 578899
Q ss_pred EEECCCc----ceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 66 MWNADRG----AYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 66 i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
+|++++. +.+..+. +......++++|+++++++++ .++.|.+||+.+...+......... .....
T Consensus 106 v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~---------~~~g~ 175 (330)
T PRK11028 106 VSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT---------TVEGA 175 (330)
T ss_pred EEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee---------cCCCC
Confidence 9998742 2222222 223467889999999886554 6799999999863322110000000 00223
Q ss_pred CeEEEEeCCCCcEEEEecc-cCeE-----Ee-------------------eeCCEEEEEEecCCCeEEEEeC-CCcEEEE
Q 043942 141 GVTCLSWPGTSKYLVTGCV-DGKV-----DG-------------------HIDAIQSLSVSAIRESLVSVSV-DGTARVF 194 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~-~~~i-----~~-------------------~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw 194 (216)
....+.|+|++++++++.. ++.+ .. +......+.++|++++++++.. ++.|.+|
T Consensus 176 ~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~ 255 (330)
T PRK11028 176 GPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVF 255 (330)
T ss_pred CCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEE
Confidence 4578899999999988765 5555 10 0011225789999999988754 7899999
Q ss_pred Ecccc
Q 043942 195 EIAEF 199 (216)
Q Consensus 195 ~~~~~ 199 (216)
++...
T Consensus 256 ~i~~~ 260 (330)
T PRK11028 256 SVSED 260 (330)
T ss_pred EEeCC
Confidence 98653
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.51 E-value=4.7e-13 Score=107.41 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=134.2
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------cCcEEEEEECCCccee
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~~~~v~i~d~~~~~~~ 75 (216)
.|....+..+...++.+..+..+-+||...+.....+.....+. .-+.|.+|+....+.-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 34444455566788888889999999998887666665554433 6677899998743333
Q ss_pred eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE-EeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH-AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
..+.+|.+.+..+.|+.||+++++.|+|+++++|++++.+... ..- +|...+..++|.|+ .+
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f---------------gHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF---------------GHSARVWACCFLPN--RI 231 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc---------------cccceeEEEEeccc--ee
Confidence 3688999999999999999999999999999999999887655 222 29999999999998 89
Q ss_pred EEecccCeE-------------Eee-eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 155 VTGCVDGKV-------------DGH-IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 155 ~~~~~~~~i-------------~~~-~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
++++.|-.. .+| ...|..++..++...++|++.|+.+++|++...
T Consensus 232 ~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999998876 233 357899999999999999999999999998753
No 216
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.2e-12 Score=92.34 Aligned_cols=157 Identities=11% Similarity=0.143 Sum_probs=109.9
Q ss_pred eeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceE------EEEe--------C--CCCcc--------
Q 043942 6 WASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQ------CTVE--------G--PRGGI-------- 59 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~------~~~~--------~--~~~~~-------- 59 (216)
...++......|++++|.| -|-.||+++.||++|||+..+.-.+ .+++ . +..++
T Consensus 104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH 183 (361)
T ss_pred EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence 3456777888999999999 4678999999999999987654221 2222 0 00011
Q ss_pred -------------cCcEEEEEECCCc----ceeeeeeccCCCeeEEEEcCC----CcEEEEecCCCeEEEEeCCCCceeE
Q 043942 60 -------------EDSTVWMWNADRG----AYLNMFSGHGSGLTCGDFTTD----GKTICTGSDNATLSIWNPKGGENFH 118 (216)
Q Consensus 60 -------------~~~~v~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~----~~~l~t~~~d~~i~~wd~~~~~~~~ 118 (216)
.-+.++||....+ ..+.++.+|..+|++++|.|+ -..||+++.|| |++|.++.....-
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i 262 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAI 262 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchh
Confidence 3347888876543 345667899999999999995 25789999999 9999998432111
Q ss_pred ---Eeec--ccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 119 ---AIRR--SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 119 ---~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.... ..............+|+++|..+.|+-.|..|.+.+.||.+
T Consensus 263 ~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V 312 (361)
T KOG2445|consen 263 EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV 312 (361)
T ss_pred hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence 0000 01112222333345699999999999999999999999998
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=7.1e-13 Score=106.99 Aligned_cols=170 Identities=12% Similarity=0.180 Sum_probs=126.2
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCCcc---eeee
Q 043942 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADRGA---YLNM 77 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~~~---~~~~ 77 (216)
-+.|.....+|.+++.-..|+|||.........+....... .||.|++||.+... .+..
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 45777765567766668899999999887777665433322 89999999998543 4667
Q ss_pred eeccCCC--eeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee-ecCeEEEEeCCCCcE
Q 043942 78 FSGHGSG--LTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL-YDGVTCLSWPGTSKY 153 (216)
Q Consensus 78 ~~~~~~~--v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 153 (216)
.+.|+.. |..+.+.+.|- .|++|+.||.|++||++.......+.... .-. .+..+++..++....
T Consensus 1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~-----------~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA-----------HWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee-----------ccccCccceeeeeccCCCe
Confidence 7888877 99999988665 49999999999999999742221111100 001 224899999999999
Q ss_pred EEEecccCeE--------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 154 LVTGCVDGKV--------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 154 l~~~~~~~~i--------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+++|+. +.+ ....+.+.+++|+|..-++|+|+.|..|.||.-...+
T Consensus 1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 999987 544 1223567999999999999999999999999876543
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=90.48 Aligned_cols=135 Identities=15% Similarity=0.223 Sum_probs=100.1
Q ss_pred ccceEEEEEcc-CCC--EEEEEcCCCcEEEEECCCCceEEEEe----------CCCCcc----------------cCcEE
Q 043942 14 KDSFSSLAFST-DGQ--LLASGGFHGLVQNRDTSSRNLQCTVE----------GPRGGI----------------EDSTV 64 (216)
Q Consensus 14 ~~~v~~~~~s~-~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~----------~~~~~~----------------~~~~v 64 (216)
.+.+.|..+.- ++. +|+.|-.+|.|.+||+.++..+..+. .|..++ .+..+
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl 229 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKL 229 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence 35677776543 333 45667778999999999984433332 222222 45567
Q ss_pred EEEECCC--ccee--eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 65 WMWNADR--GAYL--NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 65 ~i~d~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
..|.++. +... ....-.+-.|..+...||++.+||++.|+.|++|..++..++..++. |.+
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky---------------Hsa 294 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY---------------HSA 294 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh---------------hhc
Confidence 7777763 2211 11222334588999999999999999999999999999999999988 999
Q ss_pred CeEEEEeCCCCcEEEEecccCeE
Q 043942 141 GVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.|++++|+|+...+++++.|+.|
T Consensus 295 gvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 295 GVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred ceeEEEeCCCCchhhhccCCceE
Confidence 99999999999999999999876
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.46 E-value=1.3e-10 Score=88.02 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=102.8
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH 81 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 81 (216)
++.+.+.++......-..+.++|||+++++++.||.|.++|+.+++. +.+++.
T Consensus 24 ~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--------------------------v~~i~~- 76 (369)
T PF02239_consen 24 ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV--------------------------VATIKV- 76 (369)
T ss_dssp TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE--------------------------EEEEE--
T ss_pred CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE--------------------------EEEEec-
Confidence 45677888876544445578999999999999777766666665554 444442
Q ss_pred CCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-Eecc
Q 043942 82 GSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TGCV 159 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~ 159 (216)
.....++++++||+++++++ ..+.+.++|.++.+.++.++........ ....+..+..+|....++ +.-+
T Consensus 77 G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--------~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 77 GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--------PESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--------S---EEEEEE-SSSSEEEEEETT
T ss_pred CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc--------cCCCceeEEecCCCCEEEEEEcc
Confidence 33467899999999998776 7899999999999998888753211100 123455666666655333 3333
Q ss_pred cCeE---------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccccceee
Q 043942 160 DGKV---------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 160 ~~~i---------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~~~~~ 204 (216)
.+.+ ...........|+|+++|++.+ ..++.+-++|.++++....
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 3444 2233466788999999987664 4577899999888766543
No 220
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.8e-11 Score=93.16 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=132.7
Q ss_pred cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c-----------------------------------cCcEE
Q 043942 24 TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I-----------------------------------EDSTV 64 (216)
Q Consensus 24 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~-----------------------------------~~~~v 64 (216)
|...++|....||.+++|+...++....+...... . ..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45679999999999999999988877666432211 1 78889
Q ss_pred EEEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 65 WMWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
.+|+...++....+. .|.+.|.++.++.+-..|.+++.|..+.+|+...++....+.. ....+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---------------~~~~~ 147 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---------------QKPLV 147 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---------------CCCcc
Confidence 999999888877765 5889999999999999999999999999999999999988887 67788
Q ss_pred EEEEeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecC-----CCeEEEE-eCCCcEEEEEccc
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAI-----RESLVSV-SVDGTARVFEIAE 198 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~-----~~~l~s~-~~d~~v~vw~~~~ 198 (216)
..++.+|||..+++++..-.+ .+|.++|.++.|..+ |.++.++ ..+.-+.+|-+..
T Consensus 148 ~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 148 SSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999988876554 799999999999887 6776654 4567778887765
No 221
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=4.1e-11 Score=92.88 Aligned_cols=175 Identities=17% Similarity=0.182 Sum_probs=112.8
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCC---CcEEEEECCCCceEEEEeCCC--Ccc----------------cCcE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNLQCTVEGPR--GGI----------------EDST 63 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~--~~~----------------~~~~ 63 (216)
...+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++......... ... .+..
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 3345566677778999999999999987654 479999998875433221110 000 2345
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CC--eEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
|++||+.++... .+..+........|+|+++.|+..+. ++ .|+++|+.+++... +.. ...
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~---------------~~~ 322 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTF---------------RGG 322 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eec---------------CCC
Confidence 888888876543 34445455567899999998876653 33 58888887665432 222 334
Q ss_pred CeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEc
Q 043942 141 GVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEI 196 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~ 196 (216)
......|+|+|++++..+.++ .+ ...........|+|+|++|+..+.++ .+++.+.
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 566788999999888877654 33 01111234568999999888776653 3455554
No 222
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=6.4e-12 Score=95.98 Aligned_cols=111 Identities=16% Similarity=0.314 Sum_probs=91.3
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc--
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-- 152 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 152 (216)
-..+++|.+.|.++...|.|.+|++|+.||+|++|.+.+|.++..+. ..+.|.+++|+|.+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----------------~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----------------FDSEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----------------ecceeEEEEecCCCCce
Confidence 34578999999999999999999999999999999999999999887 567899999999765
Q ss_pred EEEEecccCeE--------------------------------------------------EeeeCCEEEEEEecCCCeE
Q 043942 153 YLVTGCVDGKV--------------------------------------------------DGHIDAIQSLSVSAIRESL 182 (216)
Q Consensus 153 ~l~~~~~~~~i--------------------------------------------------~~~~~~i~~~~~~~~~~~l 182 (216)
.|+++-.+..+ ..|...|.++.|+..|.||
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 45555444422 4567889999999999999
Q ss_pred EEEeCC---CcEEEEEcccccc
Q 043942 183 VSVSVD---GTARVFEIAEFRR 201 (216)
Q Consensus 183 ~s~~~d---~~v~vw~~~~~~~ 201 (216)
++...+ ..|.|+++...+.
T Consensus 537 atV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred EEeccCCCcceEEEEecccccc
Confidence 986553 5788999876443
No 223
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=6e-13 Score=100.65 Aligned_cols=112 Identities=22% Similarity=0.452 Sum_probs=97.7
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC--CCc
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG--TSK 152 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~ 152 (216)
...+.+|.+.|++++|+.+|.+|++|++|-.+.|||....+.++.+.. +|...|.++.|-| +.+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--------------gHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST--------------GHTANIFSVKFVPYTNNR 108 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec--------------ccccceeEEeeeccCCCe
Confidence 356889999999999999999999999999999999998888887764 3889999999988 456
Q ss_pred EEEEecccCeE------------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942 153 YLVTGCVDGKV------------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 153 ~l~~~~~~~~i------------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.+++|..|..| ..|...|..++-.|++ +.+-++++||+++-+|+++..
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred EEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 88889888887 4566788888889998 778899999999999998743
No 224
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.43 E-value=1.5e-13 Score=108.36 Aligned_cols=188 Identities=18% Similarity=0.278 Sum_probs=134.5
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------cCcEEEEEEC
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------EDSTVWMWNA 69 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------~~~~v~i~d~ 69 (216)
+++.+...+.||.+.|+.++.+.+..++|+++.|..|++|.+.++.++..+.+|.+.+ .||++++||.
T Consensus 220 et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 220 ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDA 299 (1113)
T ss_pred cchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccccCCCCCceEeccc
Confidence 6778889999999999999999999999999999999999999999999999988665 7999999998
Q ss_pred CCcceeee-----eeccCCCeeEEEEcCCCcEEEEecCCC-------------------------------------eEE
Q 043942 70 DRGAYLNM-----FSGHGSGLTCGDFTTDGKTICTGSDNA-------------------------------------TLS 107 (216)
Q Consensus 70 ~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~t~~~d~-------------------------------------~i~ 107 (216)
+-...+.. +. ....+.++.|..++..++|++.|+ .++
T Consensus 300 r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 300 RLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred cccccccCCCCCCcc-cccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEee
Confidence 71111100 00 112233333444444444444444 455
Q ss_pred EEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE---------------EeeeCCEE
Q 043942 108 IWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV---------------DGHIDAIQ 171 (216)
Q Consensus 108 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i---------------~~~~~~i~ 171 (216)
+|++.+|...+.... |.+.+..+.++|-. ....+++.||.. .+ ...+.
T Consensus 379 vwnl~~g~l~H~l~g---------------hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~ 442 (1113)
T KOG0644|consen 379 VWNLYTGQLLHNLMG---------------HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLV 442 (1113)
T ss_pred eeecccchhhhhhcc---------------cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceee
Confidence 555555555544444 88889999999844 455567778866 33 45677
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 172 SLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 172 ~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
..+||++|+.++....-|.++|.....++.....+
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak 477 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAK 477 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEeccCCCccccccc
Confidence 88999999999888778999998876666554443
No 225
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5e-11 Score=92.72 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=99.5
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCC
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGS 83 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 83 (216)
|...+.+..+...+....|+|||+.|+..+.+. ....|++||+.+++... +....+
T Consensus 188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~-----------------------~~~~l~~~~l~~g~~~~-l~~~~g 243 (430)
T PRK00178 188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ-----------------------KRPRIFVQNLDTGRREQ-ITNFEG 243 (430)
T ss_pred CCCceEEecCCCceeeeeECCCCCEEEEEEcCC-----------------------CCCEEEEEECCCCCEEE-ccCCCC
Confidence 334455666777889999999999988776432 22346666666554322 222334
Q ss_pred CeeEEEEcCCCcEEEE-ecCCC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-
Q 043942 84 GLTCGDFTTDGKTICT-GSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV- 159 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 159 (216)
.....+|+|||+.|+. .+.++ .|++||+.+++... +.. +........|+|+|+.++..+.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~---------------~~~~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN---------------HPAIDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc---------------CCCCcCCeEECCCCCEEEEEECC
Confidence 4557899999998874 44444 68888998776433 322 3334556789999987765543
Q ss_pred cCe--E-------------EeeeCCEEEEEEecCCCeEEEEeCC-C--cEEEEEccccc
Q 043942 160 DGK--V-------------DGHIDAIQSLSVSAIRESLVSVSVD-G--TARVFEIAEFR 200 (216)
Q Consensus 160 ~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d-~--~v~vw~~~~~~ 200 (216)
++. + ...........|+|+|++|+..+.+ + .|.+||+.+++
T Consensus 308 ~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 308 GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 322 2 0011123456899999999876643 3 57888987654
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=1e-11 Score=89.12 Aligned_cols=185 Identities=17% Similarity=0.227 Sum_probs=125.3
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCcc-----------------------------
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGGI----------------------------- 59 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~----------------------------- 59 (216)
.+-|.++.|..+|.+||||..+|.|.++.-.... ....++.|...-
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4578999999999999999999999999765432 333444444422
Q ss_pred -cCcEEEEEECCCcce-----------------------------------eee-eeccCCCeeEEEEcCCCcEEEEecC
Q 043942 60 -EDSTVWMWNADRGAY-----------------------------------LNM-FSGHGSGLTCGDFTTDGKTICTGSD 102 (216)
Q Consensus 60 -~~~~v~i~d~~~~~~-----------------------------------~~~-~~~~~~~v~~~~~~~~~~~l~t~~~ 102 (216)
.|.+|++|.+..... .+. -.+|+..|+++.++.|...++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999998753211 000 12577889999999999998886 5
Q ss_pred CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccCeE------------------
Q 043942 103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDGKV------------------ 163 (216)
Q Consensus 103 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~i------------------ 163 (216)
|=.|.+|+++-......+-.-...... ....-|++..|+|. .+.++-++..|.|
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmE-------eLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANME-------ELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHH-------HHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence 778999999854432222110000000 03345788888884 4667777888887
Q ss_pred ------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc-cccceeecCC
Q 043942 164 ------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA-EFRRATKAPS 207 (216)
Q Consensus 164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~-~~~~~~~~~~ 207 (216)
.+--..|.++.|+++|+|+++-+ =-+|++||+. +.++....+.
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEee
Confidence 11124789999999999998763 2789999994 4455444443
No 227
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.4e-11 Score=97.63 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=129.0
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECC-C-
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNAD-R- 71 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~-~- 71 (216)
.+...+.|+|-...+++++....|+|||.+.++....+.....+. .||.|+||+-- .
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 356678899988889999988899999999998887776554432 89999999843 2
Q ss_pred ---cceeeeeec-------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 72 ---GAYLNMFSG-------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 72 ---~~~~~~~~~-------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
.+.+..+.+ ..+.=.-++|.....+|++++.-+.|++||.........++.. ....
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--------------s~t~ 1210 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--------------SSTL 1210 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--------------CCcc
Confidence 222222221 1222245788887777777777899999999988887777652 3455
Q ss_pred eEEEEeC-CCCcEEEEecccCeE-----------------EeeeCC--EEEEEEecCCC-eEEEEeCCCcEEEEEcccc
Q 043942 142 VTCLSWP-GTSKYLVTGCVDGKV-----------------DGHIDA--IQSLSVSAIRE-SLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 142 v~~~~~~-~~~~~l~~~~~~~~i-----------------~~~~~~--i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~ 199 (216)
++++.-+ ..|+.+++|..||.+ ..|... |..+.+.++|- .|++++.||.|++||++..
T Consensus 1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred ceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 6666543 357999999999998 566666 99999998775 4999999999999999874
No 228
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.3e-11 Score=93.51 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=87.6
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC---CeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN---ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
+..|.+||..... .+.+..+...+...+|+|||+.|+.++.+ ..|++||+.+++......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~---------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS---------------- 245 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------------
Confidence 4789999987554 45566778889999999999999887643 469999998876433221
Q ss_pred eecCeEEEEeCCCCcEEEEec-ccCeE---------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEccc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGC-VDGKV---------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAE 198 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~-~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~ 198 (216)
.......++|+|||+.|+.+. .+|.. ..+...+....|+|||+.|+..+ .++...||++..
T Consensus 246 ~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 246 FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 122334689999999887764 56643 22344577899999999877655 578888888754
No 229
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.37 E-value=4.2e-11 Score=85.95 Aligned_cols=143 Identities=19% Similarity=0.333 Sum_probs=99.7
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc-----------cCcEEEEE--ECC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI-----------EDSTVWMW--NAD 70 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~-----------~~~~v~i~--d~~ 70 (216)
.++....|...|..+-|+..-+++++.+.|..+.---.+.++.+..+.. ...+. ..+.|..- ..+
T Consensus 106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~ 185 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN 185 (404)
T ss_pred hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence 4455667999999999999889999999887765444444444332221 11111 22333222 223
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
.-.++.++.+|.+.+.+++|.|..+.+.+|..|..+.+||+--++-. .+... |.+.|..+..-+
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g---------------h~~kV~~l~~~~ 250 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG---------------HNDKVQALSYAQ 250 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc---------------chhhhhhhhhhh
Confidence 44567788999999999999999999999999999999999854432 33333 667777777766
Q ss_pred CCcEEEEecccCeE
Q 043942 150 TSKYLVTGCVDGKV 163 (216)
Q Consensus 150 ~~~~l~~~~~~~~i 163 (216)
--+.+.+++.||.+
T Consensus 251 ~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 251 HTRQLISCGEDGGI 264 (404)
T ss_pred hheeeeeccCCCeE
Confidence 66777788888777
No 230
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.37 E-value=1.2e-11 Score=90.19 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=100.8
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT 96 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 96 (216)
+..+..++.++++|.+..+....+++...... ..++++.. .-...-+.+.|..+...
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~--------------~~kl~~~~---------~v~~~~~ai~~~~~~~s 121 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK--------------GAKLLDVS---------CVPKRPTAISFIREDTS 121 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC--------------cceeeeEe---------ecccCcceeeeeeccce
Confidence 34455677888888888777666666543221 12222211 11222334444444433
Q ss_pred EEE---ecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942 97 ICT---GSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------- 163 (216)
Q Consensus 97 l~t---~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------- 163 (216)
... +++...+.+|....+.....+- |-..++.++|+||+++++++..|..|
T Consensus 122 v~v~dkagD~~~~di~s~~~~~~~~~lG----------------hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~ 185 (390)
T KOG3914|consen 122 VLVADKAGDVYSFDILSADSGRCEPILG----------------HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV 185 (390)
T ss_pred EEEEeecCCceeeeeecccccCcchhhh----------------hhhhhheeeecCCCCEEEEecCCceEEEEecCcccc
Confidence 333 3455556666655544433332 88999999999999999999999998
Q ss_pred -----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 164 -----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 164 -----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
.+|..-|..++.-++ ..|+++|.|+++++||+.+++.+..++.
T Consensus 186 IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 186 IESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred hhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccch
Confidence 689999999998665 4589999999999999999998755443
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.36 E-value=1.4e-10 Score=82.98 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=126.7
Q ss_pred CCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEE---------EEeCCCCcc-------------
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQC---------TVEGPRGGI------------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~---------~~~~~~~~~------------- 59 (216)
+.+.-..++....++.+++|||||+ .|.+...+-.|.||.+.+.+... -+..+..+-
T Consensus 80 Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 80 QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDY 159 (447)
T ss_pred cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHH
Confidence 3444556666778899999999995 56677788999999998764332 111122111
Q ss_pred -----------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942 60 -----------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110 (216)
Q Consensus 60 -----------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd 110 (216)
.++.+.+||.--...+..+. -.-.+..++|+|.+++|+.|+.|+.+++.+
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence 67778899865443433333 234689999999999999999999999876
Q ss_pred CCCCceeEEeec------cc------------------cccccc---------------ce------------EEEeeee
Q 043942 111 PKGGENFHAIRR------SS------------------LEFSLN---------------YW------------MICTSLY 139 (216)
Q Consensus 111 ~~~~~~~~~~~~------~~------------------~~~~~~---------------~~------------~~~~~~~ 139 (216)
--+-+...++-. +. ..+.+. .. .-.....
T Consensus 239 h~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk 318 (447)
T KOG4497|consen 239 HFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPK 318 (447)
T ss_pred eeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcc
Confidence 554433222211 00 000000 00 0000123
Q ss_pred cCeEEEEeCCCCcEEEEecccCe--E-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDGK--V-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
..+..++|++|..++++-.++-. + .....+|....|+|....|+.+.....+++|....
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred cccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 44677899999999888655421 1 23456899999999988888887778899998765
No 232
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=1e-10 Score=91.10 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=93.6
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC 87 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~ 87 (216)
+.+..+...+.+..|+|||+.|+..+.+. ....|++||+.+++... +....+....
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~-----------------------g~~~L~~~dl~tg~~~~-lt~~~g~~~~ 266 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFEN-----------------------RKAEIFVQDIYTQVREK-VTSFPGINGA 266 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecC-----------------------CCcEEEEEECCCCCeEE-ecCCCCCcCC
Confidence 34444556778899999999888766432 12345666666554322 2222233457
Q ss_pred EEEcCCCcEEEE-ecCCCe--EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cCe-
Q 043942 88 GDFTTDGKTICT-GSDNAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DGK- 162 (216)
Q Consensus 88 ~~~~~~~~~l~t-~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~- 162 (216)
.+|+|||+.|+. .+.++. |+++|+.+++... +.. +........|+|||+.++..+. ++.
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~---------------~~~~~~~p~wSpDG~~I~f~s~~~g~~ 330 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITR---------------HRAIDTEPSWHPDGKSLIFTSERGGKP 330 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Ccc---------------CCCCccceEECCCCCEEEEEECCCCCc
Confidence 899999998865 455554 8888988765433 322 3344567889999998766543 332
Q ss_pred -E-------------EeeeCCEEEEEEecCCCeEEEEeC-CC--cEEEEEccccc
Q 043942 163 -V-------------DGHIDAIQSLSVSAIRESLVSVSV-DG--TARVFEIAEFR 200 (216)
Q Consensus 163 -i-------------~~~~~~i~~~~~~~~~~~l~s~~~-d~--~v~vw~~~~~~ 200 (216)
+ ..........+|+|||++|+..+. ++ .|.++|+.+++
T Consensus 331 ~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 331 QIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred eEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 2 111122345689999999887655 34 45556766654
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.6e-11 Score=90.61 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=135.6
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe-CCCCcc------------------cCcEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE-GPRGGI------------------EDSTVW 65 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~~------------------~~~~v~ 65 (216)
.+...|..|.+-|+.+.|+..|..|++++.|..|.+||...++....+. +|...+ .||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 4556788999999999999999999999999999999998887665553 333322 677777
Q ss_pred EEECC-Ccce--eeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccc-----------ccc
Q 043942 66 MWNAD-RGAY--LNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEF-----------SLN 130 (216)
Q Consensus 66 i~d~~-~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----------~~~ 130 (216)
+=.+. ++.. ...+..|.++|..++.-|+. .-+.+++.|+.+.-+|++.+.....+....... .+.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 76654 2322 23455699999999999965 568899999999999998765433332211000 000
Q ss_pred ---ceEEE--------------------------------eeeecCeEEEEeCCCCcEEEEecccCeE------------
Q 043942 131 ---YWMIC--------------------------------TSLYDGVTCLSWPGTSKYLVTGCVDGKV------------ 163 (216)
Q Consensus 131 ---~~~~~--------------------------------~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------ 163 (216)
.+.+. ....-.|++++|+.++.-+.++..|-.|
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 00000 0123458899999766655555444433
Q ss_pred ---------------EeeeC--CEEEEEE-ecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 164 ---------------DGHID--AIQSLSV-SAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 164 ---------------~~~~~--~i~~~~~-~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
++|.. .|..+-| -|..+|+++|+.=|.|.||+-.+++.+.
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 34433 3555554 6788999999999999999987776543
No 234
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.34 E-value=5.7e-12 Score=63.62 Aligned_cols=39 Identities=38% Similarity=0.627 Sum_probs=37.3
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRD 42 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 42 (216)
|++++++++|.+.|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 578999999999999999999999999999999999997
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=5.1e-11 Score=90.79 Aligned_cols=163 Identities=13% Similarity=0.249 Sum_probs=124.0
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~ 80 (216)
|++|+.+..+..-.+.++++..++...+|++|+.+|.|..||.++.....++.... .+..
T Consensus 162 LEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~--------------------~v~s 221 (703)
T KOG2321|consen 162 LEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS--------------------SVNS 221 (703)
T ss_pred ccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc--------------------ccCC
Confidence 57899999998888999999999998999999999999999998776655544221 1222
Q ss_pred cC-----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC--CcE
Q 043942 81 HG-----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT--SKY 153 (216)
Q Consensus 81 ~~-----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 153 (216)
|. ..|+++.|+.+|-.+++|+.+|.+.+||++..+++..-.. +...+|..+.|.+. +..
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh--------------~~e~pi~~l~~~~~~~q~~ 287 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDH--------------GYELPIKKLDWQDTDQQNK 287 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeeccc--------------CCccceeeecccccCCCce
Confidence 33 3499999999999999999999999999998887654432 14567888888765 344
Q ss_pred EEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 154 LVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 154 l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
+++.. ..+ ......+..+|+-|++-+++++-.+..+..|=+...
T Consensus 288 v~S~D--k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 288 VVSMD--KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred EEecc--hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 54432 222 334456899999999999999988888777766543
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.31 E-value=4.7e-09 Score=79.58 Aligned_cols=205 Identities=15% Similarity=0.193 Sum_probs=122.1
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCC-------c---c----------
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRG-------G---I---------- 59 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~-------~---~---------- 59 (216)
+.+++.+++++.... ..++++|+||++++++. ..+.+.++|.++.+.++.+..... . +
T Consensus 65 ~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV 143 (369)
T PF02239_consen 65 LATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV 143 (369)
T ss_dssp TTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred CCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence 457788888886554 57899999999988776 579999999999999888754311 0 1
Q ss_pred ----cCcEEEEEECCCcceee-eeeccCCCeeEEEEcCCCcEEEEe-cCCCeEEEEeCCCCceeEEeeccccc-------
Q 043942 60 ----EDSTVWMWNADRGAYLN-MFSGHGSGLTCGDFTTDGKTICTG-SDNATLSIWNPKGGENFHAIRRSSLE------- 126 (216)
Q Consensus 60 ----~~~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~~~~------- 126 (216)
..+.|.+.|......+. .............|+|++++++.+ ..++.|.++|.++++.+..+......
T Consensus 144 v~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 144 VNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp EEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred EEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence 45667777766543332 222234567789999999987664 56779999999988877655431110
Q ss_pred -ccccc---eEEE---------ee-------------------eecCeEEEEeCCCCcEEEEe----cccCeE-------
Q 043942 127 -FSLNY---WMIC---------TS-------------------LYDGVTCLSWPGTSKYLVTG----CVDGKV------- 163 (216)
Q Consensus 127 -~~~~~---~~~~---------~~-------------------~~~~v~~~~~~~~~~~l~~~----~~~~~i------- 163 (216)
+.+.. +... .+ ..+.-..+..+|+++++++. ...+.+
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 00110 1000 00 11222556779999999887 333444
Q ss_pred --------EeeeCCEEEEEEecCCCeEEEEeCC--CcEEEEEcccccceeecC
Q 043942 164 --------DGHIDAIQSLSVSAIRESLVSVSVD--GTARVFEIAEFRRATKAP 206 (216)
Q Consensus 164 --------~~~~~~i~~~~~~~~~~~l~s~~~d--~~v~vw~~~~~~~~~~~~ 206 (216)
......+..+.|+++|+++..+..+ +.|.+||..+.+....++
T Consensus 304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 1111248999999999977655443 379999999998877665
No 237
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=7.6e-11 Score=86.22 Aligned_cols=111 Identities=12% Similarity=0.223 Sum_probs=92.9
Q ss_pred eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC------ceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 76 NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG------ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
+.+.+|.+.|..+.|+.++++|++|+.|..+++|.+... +++..... .|...|.+++|..
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~--------------~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH--------------PHRSNIFSLEFDL 115 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccC--------------ccccceEEEEEcc
Confidence 346689999999999999999999999999999998732 33332221 1678999999999
Q ss_pred CCcEEEEecccCeE-------------Eee---eCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 150 TSKYLVTGCVDGKV-------------DGH---IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 150 ~~~~l~~~~~~~~i-------------~~~---~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
..+++++|+.++.+ ..| .+.|+.+..+|-.+.|++.+.++.|.+||.+...
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 99999999999988 233 3489999999999999999999999999998755
No 238
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=3.4e-09 Score=82.14 Aligned_cols=180 Identities=11% Similarity=0.075 Sum_probs=102.2
Q ss_pred eEEeeccccceEEEEEccCCCE--E-EEEcCC--CcEEEEECCCCceEEEE--eCCCCcc---c---------------C
Q 043942 7 ASEILGHKDSFSSLAFSTDGQL--L-ASGGFH--GLVQNRDTSSRNLQCTV--EGPRGGI---E---------------D 61 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~--l-~s~~~d--~~v~vwd~~~~~~~~~~--~~~~~~~---~---------------~ 61 (216)
.+.+......+.+-.|+|||+. + ++...+ ..|.+.++.+++..... .+..... . +
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 3445545566778899999975 2 233333 35777788777543322 2211111 1 2
Q ss_pred cEEEEEECCCc---ceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEE--eCCC-CceeEEeecccccccccceEE
Q 043942 62 STVWMWNADRG---AYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIW--NPKG-GENFHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 62 ~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~w--d~~~-~~~~~~~~~~~~~~~~~~~~~ 134 (216)
..+..|++..+ ..........+.....+|+|||+.|+..+ .++...+| ++.. +.....+..
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~------------ 324 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK------------ 324 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc------------
Confidence 22333565542 22222222233456789999999887655 45654444 4432 222333322
Q ss_pred EeeeecCeEEEEeCCCCcEEEEeccc-C--eE-------------EeeeCCEEEEEEecCCCeEEEEeC---CCcEEEEE
Q 043942 135 CTSLYDGVTCLSWPGTSKYLVTGCVD-G--KV-------------DGHIDAIQSLSVSAIRESLVSVSV---DGTARVFE 195 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~i-------------~~~~~~i~~~~~~~~~~~l~s~~~---d~~v~vw~ 195 (216)
....+....|+|||+.|+..+.+ + .+ ......+....|+|||+.|+..+. +..|++++
T Consensus 325 ---~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 325 ---KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ---CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 33456788999999988765443 2 22 111235677899999998875433 35688889
Q ss_pred cccccc
Q 043942 196 IAEFRR 201 (216)
Q Consensus 196 ~~~~~~ 201 (216)
+..++.
T Consensus 402 l~~g~~ 407 (428)
T PRK01029 402 LITKKT 407 (428)
T ss_pred CCCCCE
Confidence 876654
No 239
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.23 E-value=2.1e-09 Score=75.73 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=98.9
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC---
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD--- 93 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~--- 93 (216)
=.-++||||+.+||.+...|+|+++|+...+. ..+..... ....-...|..+.|.+.
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~-------------------~~~d~~~Aiagl~Fl~~~~s 105 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMS-------------------FPGDLSDAIAGLIFLEYKKS 105 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccc-------------------cCCccccceeeeEeeccccc
Confidence 35789999999999999999999999864322 22221110 00112345556655432
Q ss_pred ---CcEEEEecCCCeEEEEeCCCC-----ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 94 ---GKTICTGSDNATLSIWNPKGG-----ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 94 ---~~~l~t~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
...|++-..+|.++-|-+..+ +..+.+.. .......|.++.++|..+.|++|+....-
T Consensus 106 ~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf------------~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~ 173 (282)
T PF15492_consen 106 AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSF------------SSHYPHGINSAVYHPKHRLLLVGGCEQNQDG 173 (282)
T ss_pred cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEe------------cccCCCceeEEEEcCCCCEEEEeccCCCCCc
Confidence 124555556666666554322 12222221 11146688999999988877776542110
Q ss_pred ----------------------------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942 164 ----------------------------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTA 191 (216)
Q Consensus 164 ----------------------------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v 191 (216)
......|..+..||||+.||+...+|.|
T Consensus 174 ~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 174 MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSL 253 (282)
T ss_pred cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeE
Confidence 1124578999999999999999999999
Q ss_pred EEEEcccccceee
Q 043942 192 RVFEIAEFRRATK 204 (216)
Q Consensus 192 ~vw~~~~~~~~~~ 204 (216)
.+|++.+.+...+
T Consensus 254 sLW~iPsL~~~~~ 266 (282)
T PF15492_consen 254 SLWEIPSLRLQRS 266 (282)
T ss_pred EEEecCcchhhcc
Confidence 9999998766544
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=3.9e-10 Score=79.46 Aligned_cols=167 Identities=16% Similarity=0.121 Sum_probs=114.3
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE--EEeCCCCcc-----------------cCcEEEEEECC-Ccceee
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC--TVEGPRGGI-----------------EDSTVWMWNAD-RGAYLN 76 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~-----------------~~~~v~i~d~~-~~~~~~ 76 (216)
-.++.|++.+..++++..+|.+.+-+.......+ +++.|+.+. .|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 3467888888889999999999866655554333 555555443 89999999999 333333
Q ss_pred e-eeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc-
Q 043942 77 M-FSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK- 152 (216)
Q Consensus 77 ~-~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 152 (216)
. .+-|...|.++.-+| .+.+++||+.|-.|++||.++ ++++..-+ ..+.|..++++|.-.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~----------------v~GGVWRi~~~p~~~~ 267 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK----------------VGGGVWRIKHHPEIFH 267 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc----------------cccceEEEEecchhhh
Confidence 3 456888899998876 678999999999999999995 45554443 457788888887432
Q ss_pred -EEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEE-EEEcccc
Q 043942 153 -YLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSV-DGTAR-VFEIAEF 199 (216)
Q Consensus 153 -~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~-vw~~~~~ 199 (216)
.++++-.+|.- ..|.+-.....|.....+|+||+. |+.++ +|-.-++
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 22222222211 456666667777555567888774 77755 7765443
No 241
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.23 E-value=3.1e-09 Score=83.51 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=106.8
Q ss_pred CcEEEEECCCC-ceEEEEeCCCCcc----------------cCcEEEEEECCCcce--eee----eeccCCCeeEEEEcC
Q 043942 36 GLVQNRDTSSR-NLQCTVEGPRGGI----------------EDSTVWMWNADRGAY--LNM----FSGHGSGLTCGDFTT 92 (216)
Q Consensus 36 ~~v~vwd~~~~-~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~--~~~----~~~~~~~v~~~~~~~ 92 (216)
+.+.+|++... .....+....... .+|.|.+||++.+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 46899999876 3333333322211 899999999987654 222 235888999999976
Q ss_pred CC--cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE------
Q 043942 93 DG--KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV------ 163 (216)
Q Consensus 93 ~~--~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i------ 163 (216)
+. .-+++++.||.|..|+++.-.............. ..........++.++|.+ +...+++|+++|.|
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~---~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH---KGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccc---cccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 44 4489999999999998885543221111100000 000001445688999977 45678899999988
Q ss_pred ----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 164 ----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 164 ----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
..|.++|..+.++|-+..++..+.|-++++|.-.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence 4567899999999987655555559999999977
No 242
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.7e-09 Score=84.28 Aligned_cols=123 Identities=12% Similarity=0.060 Sum_probs=86.4
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
...|.++|.... ....+..+...+.+.+|+|||+.|+..+. +..|++||+.+++... +..
T Consensus 181 ~~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~--------------- 243 (435)
T PRK05137 181 IKRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGN--------------- 243 (435)
T ss_pred ceEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eec---------------
Confidence 347888887544 34556667888999999999999887653 4689999999876543 222
Q ss_pred eecCeEEEEeCCCCcEEE-EecccCe--E-------------EeeeCCEEEEEEecCCCeEEEEeC-CC--cEEEEEccc
Q 043942 138 LYDGVTCLSWPGTSKYLV-TGCVDGK--V-------------DGHIDAIQSLSVSAIRESLVSVSV-DG--TARVFEIAE 198 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~-~~~~~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~-d~--~v~vw~~~~ 198 (216)
....+....|+|||+.|+ +.+.++. + ..+........|+|||+.|+..+. +| .|++||+..
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g 323 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG 323 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC
Confidence 445667889999998775 4444443 2 223344567899999998887664 33 678888765
Q ss_pred cc
Q 043942 199 FR 200 (216)
Q Consensus 199 ~~ 200 (216)
++
T Consensus 324 ~~ 325 (435)
T PRK05137 324 SN 325 (435)
T ss_pred CC
Confidence 43
No 243
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=3e-10 Score=80.90 Aligned_cols=186 Identities=15% Similarity=0.230 Sum_probs=122.1
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCcc-----------------------------
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGGI----------------------------- 59 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~----------------------------- 59 (216)
.+.|+++.|...|.||++|...|.|.+|.-+... ....++.|....
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4679999999999999999999999999765432 222344444322
Q ss_pred -cCcEEEEEECCCcc-------------------e-----------------------eeee-eccCCCeeEEEEcCCCc
Q 043942 60 -EDSTVWMWNADRGA-------------------Y-----------------------LNMF-SGHGSGLTCGDFTTDGK 95 (216)
Q Consensus 60 -~~~~v~i~d~~~~~-------------------~-----------------------~~~~-~~~~~~v~~~~~~~~~~ 95 (216)
.+.+|++|.+.... + .+.. ..|...+.++.|+.|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999875320 0 0001 35777789999999888
Q ss_pred EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE-----------
Q 043942 96 TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV----------- 163 (216)
Q Consensus 96 ~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i----------- 163 (216)
.++++ .|-.|.+|++........+-........+ ...-|++..|+|.- +.+.-++..|.|
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmee-------LteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEE-------LTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHH-------HHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 88776 57789999988554332221100000000 23346777788743 445556666666
Q ss_pred -------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc-ceeecCCc
Q 043942 164 -------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR-RATKAPSY 208 (216)
Q Consensus 164 -------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~-~~~~~~~~ 208 (216)
.+-...|..+.|+++|+|+++-+ =-+|++||++..+ ++..+|.|
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechH
Confidence 22235789999999999998764 3689999998644 44445443
No 244
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=5.1e-09 Score=81.37 Aligned_cols=146 Identities=23% Similarity=0.149 Sum_probs=86.5
Q ss_pred eeccccceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942 10 ILGHKDSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG 88 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~ 88 (216)
+....+.+...+|+|||+.|+ +.+.++...+|. +|+.++. ...+..+.......
T Consensus 235 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~------------------------~d~~~~~-~~~lt~~~~~~~~~ 289 (427)
T PRK02889 235 VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT------------------------VNADGSG-LRRLTQSSGIDTEP 289 (427)
T ss_pred eecCCCCccceEECCCCCEEEEEEccCCCceEEE------------------------EECCCCC-cEECCCCCCCCcCe
Confidence 333445566889999998876 456565544443 3443332 23444455556678
Q ss_pred EEcCCCcEEEEecC-CCeEEEEeC--CCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC---e
Q 043942 89 DFTTDGKTICTGSD-NATLSIWNP--KGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG---K 162 (216)
Q Consensus 89 ~~~~~~~~l~t~~~-d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~ 162 (216)
.|+|||+.++..+. ++...+|.+ .+++... +.. .........|+|+|++++..+.++ .
T Consensus 290 ~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~---------------~g~~~~~~~~SpDG~~Ia~~s~~~g~~~ 353 (427)
T PRK02889 290 FFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTF---------------TGSYNTSPRISPDGKLLAYISRVGGAFK 353 (427)
T ss_pred EEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-Eec---------------CCCCcCceEECCCCCEEEEEEccCCcEE
Confidence 89999998876553 455555544 4443222 221 122234578999999988766543 2
Q ss_pred E------------EeeeCCEEEEEEecCCCeEEEEeCCC-c--EEEEEc
Q 043942 163 V------------DGHIDAIQSLSVSAIRESLVSVSVDG-T--ARVFEI 196 (216)
Q Consensus 163 i------------~~~~~~i~~~~~~~~~~~l~s~~~d~-~--v~vw~~ 196 (216)
+ ...........|+|||++|+..+.++ . +.+.++
T Consensus 354 I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 354 LYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred EEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 3 11112346779999999988776543 3 444444
No 245
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.5e-09 Score=79.26 Aligned_cols=137 Identities=14% Similarity=0.212 Sum_probs=109.1
Q ss_pred cceEEEEEccCCC-EEEEEcCC--CcEEEEECCCCceEEEEeCCCCcc---------------------------cCcEE
Q 043942 15 DSFSSLAFSTDGQ-LLASGGFH--GLVQNRDTSSRNLQCTVEGPRGGI---------------------------EDSTV 64 (216)
Q Consensus 15 ~~v~~~~~s~~~~-~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~---------------------------~~~~v 64 (216)
.++..+.-++... .+|+|+.. ..+++||++..+.+.+-....... .-+.+
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv 228 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV 228 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence 3455666666444 56668888 889999999886554443322211 56789
Q ss_pred EEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE-eecccccccccceEEEeeeecCe
Q 043942 65 WMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA-IRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 65 ~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
++||++.+ +++..+.--..+++++...|.++++++|...+.+..||++.++.... +.. ..+.+
T Consensus 229 R~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg---------------~tGsi 293 (412)
T KOG3881|consen 229 RLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG---------------ITGSI 293 (412)
T ss_pred EEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC---------------ccCCc
Confidence 99999854 67788877788999999999999999999999999999999988766 555 78899
Q ss_pred EEEEeCCCCcEEEEecccCeEEee
Q 043942 143 TCLSWPGTSKYLVTGCVDGKVDGH 166 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i~~~ 166 (216)
+++..+|..+++++++-|+.+.-|
T Consensus 294 rsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred ceEEEcCCCceEEeeccceeEEEe
Confidence 999999999999999999999444
No 246
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.18 E-value=4.2e-09 Score=86.98 Aligned_cols=176 Identities=11% Similarity=0.047 Sum_probs=118.3
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce-------EEEEeCCCCcc--------------------cCcEEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL-------QCTVEGPRGGI--------------------EDSTVW 65 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-------~~~~~~~~~~~--------------------~~~~v~ 65 (216)
-...+.++...+.++.+|.++.||.|++.++.-.+. ......+..+. ..+.+.
T Consensus 1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 356788999999999999999999999999876211 11111111111 567788
Q ss_pred EEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 66 MWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 66 i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
.||+++.....+++ ...+.|++++.+|-+.++++|+..|.+.+||++=+..+.....+ +..+++
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--------------~~~~i~ 1242 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--------------ARAPIR 1242 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--------------ccCCcc
Confidence 99998765554443 23477999999999999999999999999999977777666542 335566
Q ss_pred EEEeCC---CCcEEEEecc--cCeE---------------------------------EeeeCCEEEEEEecCCCeEEEE
Q 043942 144 CLSWPG---TSKYLVTGCV--DGKV---------------------------------DGHIDAIQSLSVSAIRESLVSV 185 (216)
Q Consensus 144 ~~~~~~---~~~~l~~~~~--~~~i---------------------------------~~~~~~i~~~~~~~~~~~l~s~ 185 (216)
.+..+| .....++++. .+.+ ..+.-......+..-+.++.+|
T Consensus 1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltg 1322 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTG 1322 (1431)
T ss_pred eEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeec
Confidence 555544 2234444333 3333 0111222333444445688899
Q ss_pred eCCCcEEEEEcccccce
Q 043942 186 SVDGTARVFEIAEFRRA 202 (216)
Q Consensus 186 ~~d~~v~vw~~~~~~~~ 202 (216)
+.|..|+.||....+..
T Consensus 1323 gsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCccceeeccCCCcccc
Confidence 99999999999876654
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=7.1e-09 Score=79.04 Aligned_cols=168 Identities=10% Similarity=0.111 Sum_probs=114.6
Q ss_pred ccccceEEEEEccCC--CEEEE-----EcCCCcEEEEECCCCceEEEE---------------eCCCCcc----------
Q 043942 12 GHKDSFSSLAFSTDG--QLLAS-----GGFHGLVQNRDTSSRNLQCTV---------------EGPRGGI---------- 59 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~--~~l~s-----~~~d~~v~vwd~~~~~~~~~~---------------~~~~~~~---------- 59 (216)
-|...|..+.+||.. ..+|+ .+.-..|++|..........+ .....++
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK 242 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence 366789999999863 33443 244567899887632111111 0000000
Q ss_pred ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEE--ecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICT--GSDNATLSIWNPKGGENFHAIRRSSLEFSLNY 131 (216)
Q Consensus 60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 131 (216)
.+.++++++++.....-.+. ..++|.++.|+|+++.+++ |-.=..+.++|++ ++.+..+.
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~---------- 310 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP---------- 310 (566)
T ss_pred CCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----------
Confidence 56677777777333333333 5789999999999987655 4467789999988 88887774
Q ss_pred eEEEeeeecCeEEEEeCCCCcEEEEecccC---eE------------EeeeCCEEEEEEecCCCeEEEEeC------CCc
Q 043942 132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDG---KV------------DGHIDAIQSLSVSAIRESLVSVSV------DGT 190 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~i------------~~~~~~i~~~~~~~~~~~l~s~~~------d~~ 190 (216)
.++-+++-|+|.|++++.++-++ .+ ......-+-+.|+|||++|+|++. |+.
T Consensus 311 -------egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 311 -------EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred -------CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCC
Confidence 46778999999999998887654 33 122234567899999999998764 688
Q ss_pred EEEEEccc
Q 043942 191 ARVFEIAE 198 (216)
Q Consensus 191 v~vw~~~~ 198 (216)
++||++..
T Consensus 384 ~KiwhytG 391 (566)
T KOG2315|consen 384 IKIWHYTG 391 (566)
T ss_pred eEEEEecC
Confidence 99999853
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.18 E-value=2.1e-07 Score=70.44 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=109.0
Q ss_pred cceEEEEEccCCCEEEEEcC-CCcEEEEECCC-CceEEE---Ee----CCC----Cc-----c--------------cCc
Q 043942 15 DSFSSLAFSTDGQLLASGGF-HGLVQNRDTSS-RNLQCT---VE----GPR----GG-----I--------------EDS 62 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~-~~~~~~---~~----~~~----~~-----~--------------~~~ 62 (216)
.....++++|++++|+++.. +|.|.++++.. +..... +. ++. .. + ...
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 44567999999999998875 89999999987 433322 21 111 00 0 455
Q ss_pred EEEEEECCCcc--e--eeeee-ccCCCeeEEEEcCCCcEEEEe-cCCCeEEEEeCC--CCce--eEEeecccccccccce
Q 043942 63 TVWMWNADRGA--Y--LNMFS-GHGSGLTCGDFTTDGKTICTG-SDNATLSIWNPK--GGEN--FHAIRRSSLEFSLNYW 132 (216)
Q Consensus 63 ~v~i~d~~~~~--~--~~~~~-~~~~~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~--~~~~--~~~~~~~~~~~~~~~~ 132 (216)
.|.+|++.... . ...+. ........++|+|+++++.+. -.++.|.++++. ++.. ++.+...... ..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~--~~-- 242 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG--FT-- 242 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT--SC--
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc--cc--
Confidence 67777776543 2 12222 234567899999999887554 578889999988 4432 2222211000 00
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEeccc-CeE------------------EeeeCCEEEEEEecCCCeEEEEeC-CCcEE
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCVD-GKV------------------DGHIDAIQSLSVSAIRESLVSVSV-DGTAR 192 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~v~ 192 (216)
.......++++|+|++|+++... +.| .........++++|+|++|+++.. ++.|.
T Consensus 243 -----~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 243 -----GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp -----SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred -----ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 12357889999999998876643 333 112344789999999999988765 68999
Q ss_pred EEEcc
Q 043942 193 VFEIA 197 (216)
Q Consensus 193 vw~~~ 197 (216)
+|++.
T Consensus 318 vf~~d 322 (345)
T PF10282_consen 318 VFDID 322 (345)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99875
No 249
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.17 E-value=1.5e-10 Score=58.31 Aligned_cols=39 Identities=28% Similarity=0.724 Sum_probs=36.5
Q ss_pred cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd 110 (216)
++++.++++|.+.|++++|+|+++++++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 250
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=7.8e-09 Score=80.33 Aligned_cols=124 Identities=17% Similarity=0.102 Sum_probs=83.2
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe-cCCC--eEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG-SDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~-~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
+..+++||+.+++... +....+.+...+|+|||+.|+.. +.++ .|++||+.+++......
T Consensus 222 ~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~---------------- 284 (429)
T PRK03629 222 RSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---------------- 284 (429)
T ss_pred CcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC----------------
Confidence 4578899998775432 22233445578999999988754 4444 59999998876544332
Q ss_pred eecCeEEEEeCCCCcEEEEecccC-e--E-------------EeeeCCEEEEEEecCCCeEEEEeCC---CcEEEEEccc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDG-K--V-------------DGHIDAIQSLSVSAIRESLVSVSVD---GTARVFEIAE 198 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~-~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d---~~v~vw~~~~ 198 (216)
....+....|+|+|+.|+..+.++ . + ...........|+|||++|+..+.+ ..|.+||+.+
T Consensus 285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~ 364 (429)
T PRK03629 285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT 364 (429)
T ss_pred CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 334567889999999887665532 2 2 1122345568899999999876543 3588899877
Q ss_pred ccc
Q 043942 199 FRR 201 (216)
Q Consensus 199 ~~~ 201 (216)
++.
T Consensus 365 g~~ 367 (429)
T PRK03629 365 GGV 367 (429)
T ss_pred CCe
Confidence 653
No 251
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=3.7e-09 Score=82.31 Aligned_cols=124 Identities=14% Similarity=0.134 Sum_probs=82.7
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEE-EecCCC--eEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTIC-TGSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
...|++||+.+++... +....+.....+|+|||+.++ +.+.++ .|++||+.+++... +..
T Consensus 227 ~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~--------------- 289 (433)
T PRK04922 227 RSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN--------------- 289 (433)
T ss_pred CcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc---------------
Confidence 4579999998776533 333445556889999998775 444444 59999998776433 322
Q ss_pred eecCeEEEEeCCCCcEEEEecc-cCe--E-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEccc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCV-DGK--V-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAE 198 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~-~~~--i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~ 198 (216)
+.......+|+|||+.++..+. +|. + ..+.......+|+|+|++|+..+.++ .|.+||+.+
T Consensus 290 ~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 290 HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC
Confidence 3334467899999998876653 332 2 11122344689999999998765433 689999877
Q ss_pred ccc
Q 043942 199 FRR 201 (216)
Q Consensus 199 ~~~ 201 (216)
++.
T Consensus 370 g~~ 372 (433)
T PRK04922 370 GSV 372 (433)
T ss_pred CCe
Confidence 654
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=6.7e-10 Score=94.65 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=136.7
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG 72 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~ 72 (216)
++.+-..|.++.-+|...+.+||+.||.|++|....++.+..++.....- .||.+.+|.+. .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 34456778899999999999999999999999998888777665432211 89999999988 6
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEec---CCCeEEEEeCCCCceeEEe-ecccccccccceEEEeeeecCeEEEEeC
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGS---DNATLSIWNPKGGENFHAI-RRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
++....+.|+.....++|-. ..+++++ .++.+.+||..-......+ .. |...++++++-
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~---------------H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC---------------HDGGATVLAYA 2345 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee---------------cCCCceEEEEc
Confidence 67777888999899999875 6777765 6788999997643222111 33 89999999999
Q ss_pred CCCcEEEEecccCeE---------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 149 GTSKYLVTGCVDGKV---------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i---------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
|..+.|++|+.+|.+ ..|.-+. ++ ...++++++..|.++||++.....+..+|.
T Consensus 2346 P~~qllisggr~G~v~l~D~rqrql~h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcceEEEecCCcCcEEEeehHHHHHHHHhhh----hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999999999998 2232222 44 667899999999999999999877776664
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=1e-09 Score=79.03 Aligned_cols=196 Identities=18% Similarity=0.228 Sum_probs=134.8
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeC--CCCcc---------------cCcEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEG--PRGGI---------------EDSTVWM 66 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~--~~~~~---------------~~~~v~i 66 (216)
.+++.++||.+.|+....-|-..-+++.+.|.++|||--. .++....+.. +..+. .++++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 3556788999999999999988889999999999999543 3444333321 11111 4555554
Q ss_pred EECC----CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec--cccc--------------
Q 043942 67 WNAD----RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR--SSLE-------------- 126 (216)
Q Consensus 67 ~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~--~~~~-------------- 126 (216)
+.+. +....+....|...+..+-|+-...++++.+.|..+.---.+.+..+..+.. ....
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS 174 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence 4432 2334455667999999999998888999999887766544444433211111 0000
Q ss_pred ----------ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCe
Q 043942 127 ----------FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRES 181 (216)
Q Consensus 127 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~ 181 (216)
..........+|.+++.+++|.|....+++|..|..+ .+|...|..+..-+--+.
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 1112233344588889999999999999999888877 677778888877777788
Q ss_pred EEEEeCCCcEEEEEccccc
Q 043942 182 LVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 182 l~s~~~d~~v~vw~~~~~~ 200 (216)
+.+++.||.|.+|+.+...
T Consensus 255 l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eeeccCCCeEEEEecccee
Confidence 9999999999999987543
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=4.1e-07 Score=68.09 Aligned_cols=193 Identities=14% Similarity=0.141 Sum_probs=116.3
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcC----------CCcEEEEECCCCceEEEEeCCCCcc------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGF----------HGLVQNRDTSSRNLQCTVEGPRGGI------------ 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~~~------------ 59 (216)
++++.+.++..-..+- .+ +||||+.|+.+.. +..|.+||..+++.+.++..+..+.
T Consensus 35 ~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l 112 (352)
T TIGR02658 35 EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL 112 (352)
T ss_pred CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence 3556666666443332 34 9999988877665 7899999999999999888644311
Q ss_pred -------------cCcEEEEEECCCcceeeeeeccCC-------------------------------CeeEE-------
Q 043942 60 -------------EDSTVWMWNADRGAYLNMFSGHGS-------------------------------GLTCG------- 88 (216)
Q Consensus 60 -------------~~~~v~i~d~~~~~~~~~~~~~~~-------------------------------~v~~~------- 88 (216)
.+..|.+.|+.+++.+..+.-... .....
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~ 192 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED 192 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc
Confidence 367777888777665543321000 00010
Q ss_pred -------EEcC-CCcEEEEecCCCeEEEEeCCCCcee-----EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 89 -------DFTT-DGKTICTGSDNATLSIWNPKGGENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 89 -------~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
.|.+ +++++.+... |.|.+.|+...... ..+..... ...+ ......-++++|+++.++
T Consensus 193 ~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~---~~~w-----rP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 193 EYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK---ADGW-----RPGGWQQVAYHRARDRIY 263 (352)
T ss_pred cccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc---cccc-----CCCcceeEEEcCCCCEEE
Confidence 1122 5555555444 67777775432211 11110000 0000 233344589999998887
Q ss_pred Eeccc----------CeE-------------EeeeCCEEEEEEecCCC-eEEEEe-CCCcEEEEEcccccceeec
Q 043942 156 TGCVD----------GKV-------------DGHIDAIQSLSVSAIRE-SLVSVS-VDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 156 ~~~~~----------~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~-~d~~v~vw~~~~~~~~~~~ 205 (216)
+.... +.+ ..-...+..++++||++ +|++.. .++.|.+.|..+++.+..+
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 74311 223 22356789999999999 777665 5788999999999888776
No 255
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.11 E-value=2.3e-07 Score=67.34 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=126.8
Q ss_pred EEEEEcc-CCCEEEEEcCCCc-EEEEECCCCceEEEEeCCCCcc-----------------------cCcEEEEEECC-C
Q 043942 18 SSLAFST-DGQLLASGGFHGL-VQNRDTSSRNLQCTVEGPRGGI-----------------------EDSTVWMWNAD-R 71 (216)
Q Consensus 18 ~~~~~s~-~~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~~v~i~d~~-~ 71 (216)
..++.+| ....++.+-.-|. ..+||..+++....+..+...- ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3567788 4455666655554 6688999988887776544322 78899999999 6
Q ss_pred cceeeeeeccCCCeeEEEEcCCCcEEEEecC------------------CCeEEEEeCCCCceeEEeecccccccccceE
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSD------------------NATLSIWNPKGGENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 133 (216)
.+.+..+..|.-....+.+.||++.|+++.. +-.+.+.|..+|+.+.......
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~--------- 158 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP--------- 158 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc---------
Confidence 7888888888777889999999988877631 1224445555555544432211
Q ss_pred EEeeeecCeEEEEeCCCCcEEEEecccCeE--------------------------EeeeCCEEEEEEecCCCeEEEEe-
Q 043942 134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------------------DGHIDAIQSLSVSAIRESLVSVS- 186 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------------------~~~~~~i~~~~~~~~~~~l~s~~- 186 (216)
..+...+..++++++|..++..-..|.- ..-.+.+-++++++++.++++.+
T Consensus 159 --~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 159 --DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred --cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 1267789999999998877766555432 23357899999999998886555
Q ss_pred CCCcEEEEEcccccceeecCCcc
Q 043942 187 VDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 187 ~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
.-+.+.+||..+++.+...+...
T Consensus 237 rGg~~~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSVPLPD 259 (305)
T ss_pred CCCEEEEEECCCCCEeeccccCc
Confidence 56889999999988776655443
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.1e-08 Score=78.32 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=86.1
Q ss_pred ceEEEEEccCCCEEEEE-cCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942 16 SFSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 94 (216)
.....+|+|||+.|+.. +.++. ..|+++|+.+++. ..+..+.......+|+||+
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~------------------------~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG 317 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQ------------------------PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDG 317 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCC------------------------eEEEEEECCCCCe-EECccCCCCccceEECCCC
Confidence 34567899999877754 43332 2355566665543 2344455556788999999
Q ss_pred cEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC---eE---E-
Q 043942 95 KTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG---KV---D- 164 (216)
Q Consensus 95 ~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~i---~- 164 (216)
+.++..+. + ..|+++|+.+++...... .........|+|+|++++..+.++ .+ .
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~----------------~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKVSRLTF----------------EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEEec----------------CCCCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 98876553 3 357777887766433221 112233468999999887765432 12 0
Q ss_pred --------eeeCCEEEEEEecCCCeEEEEeC-CCc--EEEEEcccccceeec
Q 043942 165 --------GHIDAIQSLSVSAIRESLVSVSV-DGT--ARVFEIAEFRRATKA 205 (216)
Q Consensus 165 --------~~~~~i~~~~~~~~~~~l~s~~~-d~~--v~vw~~~~~~~~~~~ 205 (216)
..........|+|||+.|+..+. ++. +++++.. ++....+
T Consensus 382 ~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l 432 (448)
T PRK04792 382 ETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL 432 (448)
T ss_pred CCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC
Confidence 00011223479999998876554 343 6667763 4333333
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=2e-09 Score=87.17 Aligned_cols=113 Identities=22% Similarity=0.248 Sum_probs=94.1
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG 88 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~ 88 (216)
.+.+|.+.|.++.|+.||++++++|.|.++|+|++++.+... ...-+|...|..+
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------------------------~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------------------------CTGFGHSARVWAC 224 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------------------------cccccccceeEEE
Confidence 578999999999999999999999999998888887665321 1344699999999
Q ss_pred EEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 89 DFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 89 ~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.|.|+ .++|++.|.+.++|+.. +..+..+... ....+..++..++....++++.|+.+
T Consensus 225 ~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h--------------~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 225 CFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEH--------------SGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred Eeccc--eeEEeccceEEEEEecc-cceehhhhhh--------------hhcceeEEEEcCCceEEEeeccCcch
Confidence 99988 99999999999999766 5555555541 34678899999999999999999988
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=5.4e-08 Score=75.20 Aligned_cols=145 Identities=12% Similarity=0.070 Sum_probs=87.0
Q ss_pred ceEEEEEccCCCE-EEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942 16 SFSSLAFSTDGQL-LASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 16 ~v~~~~~s~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 94 (216)
......|+|||+. ++..+.++ .+..|+++|+.+++...... ..+.....+|+|||
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~-----------------------~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGE-----------------------RKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccC-----------------------CCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 5667788888874 55444432 13457777777665543332 44556678899999
Q ss_pred cEEEEe-c--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-Ce--E-----
Q 043942 95 KTICTG-S--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-GK--V----- 163 (216)
Q Consensus 95 ~~l~t~-~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~--i----- 163 (216)
+.++.. + .+..|.++|+.+++... +.. .........|+|||+.|+..+.. +. +
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~---------------~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITN---------------YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEE-ccc---------------CCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 877643 3 34568888988776433 332 22223345799999876655432 22 2
Q ss_pred ------EeeeCCEEEEEEecCCCeEEEEeCC---------CcEEEEEccccc
Q 043942 164 ------DGHIDAIQSLSVSAIRESLVSVSVD---------GTARVFEIAEFR 200 (216)
Q Consensus 164 ------~~~~~~i~~~~~~~~~~~l~s~~~d---------~~v~vw~~~~~~ 200 (216)
...........|+|+|++|+..+.. ..|.+.|+.+++
T Consensus 309 ~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 309 NSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 0000111235899999998866543 267777877654
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=1.1e-09 Score=86.16 Aligned_cols=110 Identities=19% Similarity=0.370 Sum_probs=84.9
Q ss_pred eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCc------------c----cCcEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGG------------I----EDSTVWMW 67 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~------------~----~~~~v~i~ 67 (216)
.-..+.+|...|+.+.|+|.. ..+++++.|-.+..||+++.. ..........+ + ..+.|++|
T Consensus 106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vw 185 (1081)
T KOG0309|consen 106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVW 185 (1081)
T ss_pred eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEE
Confidence 334567899999999999965 689999999999999998753 22222211111 1 67889999
Q ss_pred ECCCc-ceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCc
Q 043942 68 NADRG-AYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGE 115 (216)
Q Consensus 68 d~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~ 115 (216)
|.+.| .++..+++|...|..++|+. ....+++++.|++|++||.....
T Consensus 186 d~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 186 DLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 99965 67788899999999999976 34578899999999999987543
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=3.3e-08 Score=77.06 Aligned_cols=144 Identities=19% Similarity=0.133 Sum_probs=86.0
Q ss_pred ccceEEEEEccCCCEEEE-EcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 14 KDSFSSLAFSTDGQLLAS-GGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
.+.+...+|+|||+.|+. .+.++ +..|++||+.++... .+..+........|+|
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g------------------------~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDG------------------------NPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK 296 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCC------------------------CceEEEEECCCCCeE-EcccCCCCcCCeEECC
Confidence 344556889999987774 33332 234556666655432 3444555566789999
Q ss_pred CCcEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-C--eE---
Q 043942 93 DGKTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-G--KV--- 163 (216)
Q Consensus 93 ~~~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~--~i--- 163 (216)
|++.++..+. + ..|+++|+.+++...... .........|+|+|+.++..+.+ + .+
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~----------------~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF----------------VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEeec----------------CCCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 9998876553 3 357788887776433221 11222356789999988766543 2 12
Q ss_pred ---------EeeeCCEEEEEEecCCCeEEEEeCC-C--cEEEEEccc
Q 043942 164 ---------DGHIDAIQSLSVSAIRESLVSVSVD-G--TARVFEIAE 198 (216)
Q Consensus 164 ---------~~~~~~i~~~~~~~~~~~l~s~~~d-~--~v~vw~~~~ 198 (216)
...........|+|||+.++..+.+ + .+.++++..
T Consensus 361 dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 361 DLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 0111122356899999998876543 3 466666643
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.06 E-value=4.3e-08 Score=76.12 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=82.7
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEE-ecCC--CeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICT-GSDN--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t-~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
..|++||+.+++... +..+.+.+.+++|+||++.|+. .+.+ ..|++||+.++..... .. +
T Consensus 214 ~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~---------------~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TN---------------G 276 (417)
T ss_pred cEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CC---------------C
Confidence 579999998876543 3335566778999999987764 4444 3589999987654332 22 2
Q ss_pred ecCeEEEEeCCCCcEEEEecc-cC--eE-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcccc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCV-DG--KV-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAEF 199 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~-~~--~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~~ 199 (216)
........|+|+|+.|+..+. .+ .+ ..+...+....|+|+|++++.++.++ .|.+||+.++
T Consensus 277 ~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 277 PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 233445688999988765543 22 22 12334566789999999999887765 7889998764
Q ss_pred c
Q 043942 200 R 200 (216)
Q Consensus 200 ~ 200 (216)
.
T Consensus 357 ~ 357 (417)
T TIGR02800 357 G 357 (417)
T ss_pred C
Confidence 3
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=5.2e-08 Score=73.45 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=65.0
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
.+-++|.++++.. .+...-+.|.++..+|+|+.++.+.....+.+.|+.++.....-.. ..+-|
T Consensus 383 ~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS---------------~~~lI 446 (668)
T COG4946 383 KLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS---------------EYGLI 446 (668)
T ss_pred eEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc---------------cccee
Confidence 6777777766543 3444667899999999999999999999999999999876544333 55667
Q ss_pred EEEEeCCCCcEEEEecccCeE
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i 163 (216)
+.+.|+|+++++|-+-.+|.+
T Consensus 447 tdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 447 TDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred EEEEEcCCceeEEEecCccee
Confidence 777888888877777666654
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=9.4e-10 Score=86.41 Aligned_cols=161 Identities=13% Similarity=0.204 Sum_probs=120.6
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
.....|++|+....++|.|+.||.++|..+.+...-....+-. ...+-..-+++.+|.+.|..+.|+.+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla-----------a~snLsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA-----------AASNLSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccc-----------cccccchhhhhccCcceEEEEEeccc
Confidence 3567899999999999999999999999887654222211100 01111223568899999999999999
Q ss_pred CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942 94 GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------- 163 (216)
Q Consensus 94 ~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------- 163 (216)
.+.|-|...+|.|.+|-+-+|....+..... ..+-|.+++|+.+|..+.....||.+
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR-------------nKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI 149 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNR-------------NKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI 149 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCc-------------CccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence 9999999999999999998886544332211 45678999999999999888888877
Q ss_pred ---EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 164 ---DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 164 ---~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.-.......+.|++|.+.++.+-..|.++++|...
T Consensus 150 wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 150 WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cchhcchheccceeecccHHHHHhhhcCCcEEEecccc
Confidence 11123456789999999888888889999998653
No 264
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=7.8e-09 Score=74.66 Aligned_cols=150 Identities=14% Similarity=0.172 Sum_probs=92.9
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE-eCCCCcc------------------------cCcEEEE
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV-EGPRGGI------------------------EDSTVWM 66 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~~------------------------~~~~v~i 66 (216)
+|...|++++++.|++.++++. |=.|.+|+++-......+ ...+... +.|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 6889999999999999999887 778999998754333222 1111110 8999999
Q ss_pred EECCCccee------ee----------eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccccccc
Q 043942 67 WNADRGAYL------NM----------FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSLEFSL 129 (216)
Q Consensus 67 ~d~~~~~~~------~~----------~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~ 129 (216)
.|++....- .. +..--..|..+.|+++|+++++-+. -+|++||+. ..+++..++...-....
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 999843211 10 1111246889999999999988643 589999994 45666555541100000
Q ss_pred cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
-........-..-..++|+.++.++++|+.+..+
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceE
Confidence 0000000011122457888888888888877655
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=2.1e-09 Score=77.53 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=89.5
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT- 92 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~- 92 (216)
++.|.++.|...++++..|...|.|.++|++.+.. ..+.+...+. |...|+++..-.
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq---------------------G~~~~a~rly-h~Ssvtslq~Lq~ 309 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ---------------------GNGWCAQRLY-HDSSVTSLQILQF 309 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc---------------------CCCcceEEEE-cCcchhhhhhhcc
Confidence 44566667776667777777666666666554310 1133444554 889999998877
Q ss_pred CCcEEEEecCCCeEEEEeCCCCce---eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeeeCC
Q 043942 93 DGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDA 169 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~~ 169 (216)
++++|++.+.+|+|++||++--+. +..+.+ |. +.. .
T Consensus 310 s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG---------------Hv---N~~-----------------------a 348 (425)
T KOG2695|consen 310 SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG---------------HV---NLS-----------------------A 348 (425)
T ss_pred ccceEeeccCcCceeEeeehhhhcccceeeeec---------------cc---ccc-----------------------c
Confidence 788999999999999999986554 444443 21 111 1
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 170 IQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 170 i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
-.-+...+.+..++++++|...|||.+..+..+..+|.
T Consensus 349 ~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 349 YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 12234556777888899999999999999888776654
No 266
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.1e-09 Score=83.72 Aligned_cols=165 Identities=14% Similarity=0.238 Sum_probs=114.8
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT 86 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~ 86 (216)
+..+.||...|..++--.+.+-+++++.|.+|++|.++..-. .+.+..+..+++.|..+|.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------------------~~~tsaCQfTY~aHkk~i~ 788 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------------------EIGTSACQFTYQAHKKPIH 788 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------------------ccccceeeeEhhhccCccc
Confidence 456779999999988777778899999999999999864210 1223456677889999999
Q ss_pred EEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeE--
Q 043942 87 CGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKV-- 163 (216)
Q Consensus 87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i-- 163 (216)
++.|-.+.+.++++ |+.|.+||.--++.+......+.+ +....|.++. +-+...+..+ +.+.++
T Consensus 789 ~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~----------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl 855 (1034)
T KOG4190|consen 789 DIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE----------GAGGNIKCLE-NVDRHILIAGCSAESTVKL 855 (1034)
T ss_pred ceeeeeccceeeec--cCcceeecccccchhHhhhcCccc----------CCCceeEecc-cCcchheeeeccchhhhee
Confidence 99999888888765 889999999888776544332211 0111222221 1133333333 334433
Q ss_pred -----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 164 -----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 164 -----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.+...-+.+++..+.|+.++++-..|++.+-|.++++.+.
T Consensus 856 ~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 856 FDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred eecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 2233567889999999999999889999999999888544
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.98 E-value=8.3e-08 Score=72.71 Aligned_cols=101 Identities=8% Similarity=0.009 Sum_probs=65.8
Q ss_pred cCCCeeEEEEcCCCcEEEEe--cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 81 HGSGLTCGDFTTDGKTICTG--SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
..++|....|.|.++.+++. -.+..+.++|++.. ....++. ..=+.+.|+|.+++++.++
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe-----------------~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE-----------------QKRNTIFFSPHERYILFAG 334 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc-eEEecCC-----------------cccccccccCcccEEEEec
Confidence 46789999999988776654 47888999999844 4444432 2334455566666665554
Q ss_pred ccCeE----------------EeeeCCEEEEEEecCCCeEEEEe------CCCcEEEEEcccc
Q 043942 159 VDGKV----------------DGHIDAIQSLSVSAIRESLVSVS------VDGTARVFEIAEF 199 (216)
Q Consensus 159 ~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~------~d~~v~vw~~~~~ 199 (216)
-+..- .-......-+.|+|+++++.+.. .|..++|||+...
T Consensus 335 F~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 335 FDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred CCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 43322 11123345568999999887653 3788999998653
No 268
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.96 E-value=3.6e-09 Score=73.56 Aligned_cols=137 Identities=12% Similarity=0.111 Sum_probs=84.6
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeC------------CCCcc---------cCcEEEEEEC
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEG------------PRGGI---------EDSTVWMWNA 69 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~------------~~~~~---------~~~~v~i~d~ 69 (216)
.|.++-.+-+.+-.++.++++..||.+.+.+.+.-. ....+.. +...+ .-+..+.|++
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecc
Confidence 344433333334456789999999999999876521 1111110 11111 2333444544
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEe
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+..+.+..-......|.+++-+|.. ..+++|+.||.+.+||.++.... ..+.. |..++..+.|
T Consensus 167 ~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a---------------hk~~i~eV~F 231 (319)
T KOG4714|consen 167 DPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA---------------HKAEIWEVHF 231 (319)
T ss_pred cccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH---------------hhhhhhheec
Confidence 4222111111122348899999954 56678889999999999987433 23333 8899999999
Q ss_pred CC-CCcEEEEecccCeE
Q 043942 148 PG-TSKYLVTGCVDGKV 163 (216)
Q Consensus 148 ~~-~~~~l~~~~~~~~i 163 (216)
+| ++..|+++++||.+
T Consensus 232 Hpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 232 HPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cCCCchheeEecCCCcE
Confidence 98 67889999999988
No 269
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.96 E-value=1.5e-06 Score=65.76 Aligned_cols=172 Identities=17% Similarity=0.164 Sum_probs=107.4
Q ss_pred cceEEEEEccCCCEEEEEcC----CCcEEEEECCCC--c--eEEEEe-CCCCcc----------------cCcEEEEEEC
Q 043942 15 DSFSSLAFSTDGQLLASGGF----HGLVQNRDTSSR--N--LQCTVE-GPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~----d~~v~vwd~~~~--~--~~~~~~-~~~~~~----------------~~~~v~i~d~ 69 (216)
.....++++|++++|.++.. ++.|..|++... + .+.... ....+. .++.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34567899999999988876 568988887764 2 222332 111111 7899999999
Q ss_pred CC-cceeee---ee----------ccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCce-eEEeecccccccccceE
Q 043942 70 DR-GAYLNM---FS----------GHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 70 ~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~ 133 (216)
.. +..... +. .......++.++|+++++++.. ....|.+|++..... +......
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---------- 186 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---------- 186 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE----------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc----------
Confidence 86 332221 11 1124577999999999887754 445799999986552 2111100
Q ss_pred EEeeeecCeEEEEeCCCCcEEEEecc-cCeE------------------------EeeeCCEEEEEEecCCCeEEEEe-C
Q 043942 134 ICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV------------------------DGHIDAIQSLSVSAIRESLVSVS-V 187 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i------------------------~~~~~~i~~~~~~~~~~~l~s~~-~ 187 (216)
........+.+.|+|+++++++..+ ++.+ .........++++|||++|.++. .
T Consensus 187 -~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 187 -KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp -ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred -ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 0014567899999999998776554 3434 00112578899999999987765 4
Q ss_pred CCcEEEEEcc
Q 043942 188 DGTARVFEIA 197 (216)
Q Consensus 188 d~~v~vw~~~ 197 (216)
++.|.+|++.
T Consensus 266 ~~sI~vf~~d 275 (345)
T PF10282_consen 266 SNSISVFDLD 275 (345)
T ss_dssp TTEEEEEEEC
T ss_pred CCEEEEEEEe
Confidence 6889999994
No 270
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=1.1e-08 Score=82.25 Aligned_cols=152 Identities=14% Similarity=0.243 Sum_probs=110.7
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT 91 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 91 (216)
+..++-|+-...+..+|+++.+..+.......++ ..|+|.+-|.++.+.++++.+|.+.|..++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 3567777777778888888887776665555333 7899999999999999999999999887765
Q ss_pred CCCcEEEEecC---------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccC
Q 043942 92 TDGKTICTGSD---------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDG 161 (216)
Q Consensus 92 ~~~~~l~t~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~ 161 (216)
.|+.|++++. |..|+|||++..+.+..+.. +.+ ..-+.|.|. ...+++++..|
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~---------------~~~-P~flrf~Psl~t~~~V~S~sG 288 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF---------------PYG-PQFLRFHPSLTTRLAVTSQSG 288 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc---------------ccC-chhhhhcccccceEEEEeccc
Confidence 5889998874 56699999998876655543 111 133344442 23344444444
Q ss_pred eE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 162 KV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 162 ~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
.. ......+..++++++++.++.+..+|.|.+|.
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 43 22334589999999999999999999999998
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=3.7e-09 Score=90.35 Aligned_cols=104 Identities=11% Similarity=0.216 Sum_probs=86.0
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc---ce
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG---AY 74 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~---~~ 74 (216)
..|+.+.|+.+|+.+..+..||.+.+|... .+.....++|.... .++.+.+||.... ..
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccce
Confidence 678888899999999999999999999987 45555555555433 7899999997532 23
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR 121 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 121 (216)
+. ..|.+.++++++.|..+.|++|+.+|.|++||++..+.++.++
T Consensus 2331 v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2331 VH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred ee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 33 7899999999999999999999999999999999888777665
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.94 E-value=1.1e-07 Score=73.08 Aligned_cols=113 Identities=14% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCceeEEee--ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec
Q 043942 3 QGDWASEIL--GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 3 ~g~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~ 80 (216)
.|+.-..+. .|.+.|.++.++.+-..|.+++.|+.+..|+..+ .+.+..+..
T Consensus 89 ~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~--------------------------~~~~~~~~~ 142 (541)
T KOG4547|consen 89 GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE--------------------------KVIIRIWKE 142 (541)
T ss_pred CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc--------------------------ceeeeeecc
Confidence 345555554 5888999999988888899999777766666553 444445555
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-----CcEEE
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-----SKYLV 155 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~ 155 (216)
....+.++.++||+..+++++ +.|++||+++++.+..|++ |.++|+++.|... |.++.
T Consensus 143 ~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg---------------h~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG---------------HGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC---------------CCcceEEEEEEEeccccccceee
Confidence 666788999999999999886 6799999999999999998 9999999999665 66666
Q ss_pred Eec
Q 043942 156 TGC 158 (216)
Q Consensus 156 ~~~ 158 (216)
++.
T Consensus 206 ssa 208 (541)
T KOG4547|consen 206 SSA 208 (541)
T ss_pred ecc
Confidence 543
No 273
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=3e-06 Score=60.63 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=113.5
Q ss_pred CCCceeEEeeccccceEEEE--EccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEE
Q 043942 2 NQGDWASEILGHKDSFSSLA--FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVW 65 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~--~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~ 65 (216)
.+|+.+.+..- ........ ..+++..+++++.++.+..||..+|+.+.......... .++.++
T Consensus 11 ~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~ 89 (238)
T PF13360_consen 11 RTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLY 89 (238)
T ss_dssp TTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEE
T ss_pred CCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeE
Confidence 46666666643 11111112 33356678888899999999999999988887633311 578999
Q ss_pred EEECCCcceeeee-eccC---CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 66 MWNADRGAYLNMF-SGHG---SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 66 i~d~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
.+|..+|+.+... .... ..........++..++.+..++.+..+|+++|+.+............. .. ....
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~----~~~~ 164 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP-IS----SFSD 164 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---EE----EETT
T ss_pred ecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc-ee----eecc
Confidence 9999999988774 3221 111222333347788888889999999999999987776522110000 00 0011
Q ss_pred e-EEEEeCCCCcEEEEecccCeE-----------E-eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 142 V-TCLSWPGTSKYLVTGCVDGKV-----------D-GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 142 v-~~~~~~~~~~~l~~~~~~~~i-----------~-~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+ ..+.+. ++ .++.++.++.+ . .....+.. ....++..|+.++.++.+..||+++++..
T Consensus 165 ~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 165 INGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred cccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 1 122222 33 44444444422 1 11112222 13457777887779999999999998753
No 274
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.94 E-value=8.1e-08 Score=80.69 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=108.6
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-cCcEEEE-E-------ECCCcce---------
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-EDSTVWM-W-------NADRGAY--------- 74 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-~~~~v~i-~-------d~~~~~~--------- 74 (216)
-...|.+++||||++.|+....++++.+-+ .+.+.+.+...+.... .+..|.+ | .-..|+.
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 346899999999999999999898887764 4455555444333221 0111110 0 0000110
Q ss_pred -----eeeeeccCCCeeEEEEcCCCcEEEEecC------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 75 -----LNMFSGHGSGLTCGDFTTDGKTICTGSD------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 75 -----~~~~~~~~~~v~~~~~~~~~~~l~t~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
...+. ....-..++|..||.++|+.+. -+.++||+-+ |.....-.. ..+--.
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~---------------v~gLe~ 260 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP---------------VDGLEG 260 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc---------------CCCccC
Confidence 01122 3345678999999999998763 3679999965 664443332 223345
Q ss_pred EEEeCCCCcEEEEeccc---CeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 144 CLSWPGTSKYLVTGCVD---GKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~---~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.++|.|.|++||+.... ..| ......|..+.|++|+..||..-.|. |.+|-..+..
T Consensus 261 ~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 261 ALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 78999999999987651 112 13346799999999999999876554 9999887643
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.93 E-value=6.5e-07 Score=63.62 Aligned_cols=129 Identities=15% Similarity=0.099 Sum_probs=93.0
Q ss_pred cCcEEEEEECCCcceeeeeeccCC------CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeE--Eeecccccccccc
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGS------GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFH--AIRRSSLEFSLNY 131 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~ 131 (216)
..|.|.+|..........+++-.. ...++.|++.+..++++-.+|.+.+-+...+.... ..+.
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~--------- 163 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV--------- 163 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc---------
Confidence 566666666554333333332211 23578889989999999999999866655454333 5555
Q ss_pred eEEEeeeecCeEEEEeCC-CCcEEEEecccCeE----------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEE
Q 043942 132 WMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV----------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARV 193 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~v 193 (216)
|..+..-..|+. +.+.+++|++|+.+ +.|...|.++.-+| .+.++++|+.|-.|++
T Consensus 164 ------He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 164 ------HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred ------cceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence 888888888865 45788999999988 67888899988876 4779999999999999
Q ss_pred EEccc-cccee
Q 043942 194 FEIAE-FRRAT 203 (216)
Q Consensus 194 w~~~~-~~~~~ 203 (216)
||.++ ++++.
T Consensus 238 ~DtRnm~kPl~ 248 (339)
T KOG0280|consen 238 LDTRNMGKPLF 248 (339)
T ss_pred eehhcccCccc
Confidence 99996 44443
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.92 E-value=6.7e-07 Score=62.87 Aligned_cols=163 Identities=12% Similarity=0.038 Sum_probs=115.7
Q ss_pred CEEEEEcCCCcEEEEECCCCceEE-EEeCCCCcc-----------------cCcEEEEEECCCcceeeeeeccCC--Cee
Q 043942 27 QLLASGGFHGLVQNRDTSSRNLQC-TVEGPRGGI-----------------EDSTVWMWNADRGAYLNMFSGHGS--GLT 86 (216)
Q Consensus 27 ~~l~s~~~d~~v~vwd~~~~~~~~-~~~~~~~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~--~v~ 86 (216)
.+||.|+..|...+|...+.+... ....+...+ .|.++++.++.-+..... .|.. .+.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~n 162 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQN 162 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eecccccee
Confidence 479999999999999998765433 223333322 667777777654322211 1332 378
Q ss_pred EEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 87 CGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
+++++++++++++.++...|..|.+..... +..+...+ ..+.-.+..|+.....+|++..||.+
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~-------------t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP-------------TSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc-------------cCCCceeeeeccCcceEEEEecCCcEEE
Confidence 999999999999999999999999875432 22222111 45666788999999999999999988
Q ss_pred -----------------EeeeCCEEEEEEecCCC--eEEEEeCCCcEEEEEcccccceee
Q 043942 164 -----------------DGHIDAIQSLSVSAIRE--SLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 164 -----------------~~~~~~i~~~~~~~~~~--~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
..|.+.+..+.|++.|. +|+..-.-+.+++-|+++.+..+.
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 45789999999998663 455454567899999998776543
No 277
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=3.4e-06 Score=60.85 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=107.3
Q ss_pred EEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeC---------CCCcc---cCcEEEEEECCCcceeeeeec-----
Q 043942 19 SLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEG---------PRGGI---EDSTVWMWNADRGAYLNMFSG----- 80 (216)
Q Consensus 19 ~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---------~~~~~---~~~~v~i~d~~~~~~~~~~~~----- 80 (216)
++.|.+ ++.++++--..+.|..|+..+++....-.. ..... ..+.+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~ 83 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGGV 83 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTCS
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCCc
Confidence 578888 667777777788999999888755331111 11111 445556668887754433332
Q ss_pred cCCCeeEEEEcCCCcEEEEecCC--------CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDN--------ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
.....+.+++.|+|++.++.... +.+..++.. ++...... .-...+.++|+|+++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~----------------~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD----------------GLGFPNGIAFSPDGK 146 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE----------------EESSEEEEEEETTSS
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec----------------CcccccceEECCcch
Confidence 33567899999999987776543 567777777 55333332 455678999999998
Q ss_pred EEEE-ecccCeE-----------------E--eee--CCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 153 YLVT-GCVDGKV-----------------D--GHI--DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 153 ~l~~-~~~~~~i-----------------~--~~~--~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.|+. -+..+.| . ... +..-.++++.+|++.++.-..+.|.+++.. ++...
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 7664 4555555 0 011 136789999999988887788999999977 66544
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=2.9e-06 Score=61.94 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=115.6
Q ss_pred ccccceEEEEEccCCCEEEEEcCC---CcEEEEECCC--CceEEEE----eCCCCcc---------------cCcEEEEE
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFH---GLVQNRDTSS--RNLQCTV----EGPRGGI---------------EDSTVWMW 67 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~--~~~~~~~----~~~~~~~---------------~~~~v~i~ 67 (216)
.+.+.++-|+|+|+++.|.++..+ |.|-.|.+.. |+....- .++..+- ..+.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456678899999999999888654 6777776654 4433221 1111111 67788888
Q ss_pred ECCC-cce---eeeeeccCCC----------eeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccce
Q 043942 68 NADR-GAY---LNMFSGHGSG----------LTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYW 132 (216)
Q Consensus 68 d~~~-~~~---~~~~~~~~~~----------v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
-+++ |.. +..+ .|.+. +....+.|++++|++.+ .-..|.+|++..|+....-...-
T Consensus 117 p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-------- 187 (346)
T COG2706 117 PLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-------- 187 (346)
T ss_pred EcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc--------
Confidence 8865 322 2222 24444 88899999999998876 33469999999776533222100
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecc-cCeE------------------------EeeeCCEEEEEEecCCCeEEEEeC
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV------------------------DGHIDAIQSLSVSAIRESLVSVSV 187 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i------------------------~~~~~~i~~~~~~~~~~~l~s~~~ 187 (216)
......+.+.|+|++++.++.++ ++.| .....+...+..+|||++|.++..
T Consensus 188 ----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 188 ----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred ----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 14567899999999998776544 5554 122346678899999999988754
Q ss_pred -CCcEEEEEcccc
Q 043942 188 -DGTARVFEIAEF 199 (216)
Q Consensus 188 -d~~v~vw~~~~~ 199 (216)
...|-+|.+...
T Consensus 264 g~dsI~~f~V~~~ 276 (346)
T COG2706 264 GHDSIAVFSVDPD 276 (346)
T ss_pred CCCeEEEEEEcCC
Confidence 357778877653
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.90 E-value=1.2e-06 Score=66.43 Aligned_cols=161 Identities=12% Similarity=0.162 Sum_probs=114.4
Q ss_pred EccCCCEEEEEcCCCcEEEEECCCCceEEE-EeCCCC-----cc----------------------cCcEEEEEECCCcc
Q 043942 22 FSTDGQLLASGGFHGLVQNRDTSSRNLQCT-VEGPRG-----GI----------------------EDSTVWMWNADRGA 73 (216)
Q Consensus 22 ~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~-----~~----------------------~~~~v~i~d~~~~~ 73 (216)
.+.||+.++-. ..|.|.+||..+.+..+. +..+.. .. +.|...+.+...+.
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~ 352 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY 352 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe
Confidence 34577666543 467899999887654332 111111 00 55555555555444
Q ss_pred eeeeeeccCCCeeEEEEcCCCcEEEEecCCC-eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
.++. +|.+.|.-..+..+++-++.|..|| .+-++|.++++...... .-+.|.++..+|+|+
T Consensus 353 ~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~----------------~lg~I~av~vs~dGK 414 (668)
T COG4946 353 SIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK----------------DLGNIEAVKVSPDGK 414 (668)
T ss_pred eEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----------------CccceEEEEEcCCCc
Confidence 3322 4667788888888888899999998 89999999776544333 567899999999999
Q ss_pred EEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCC----CcEEEEEcccccc
Q 043942 153 YLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVD----GTARVFEIAEFRR 201 (216)
Q Consensus 153 ~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d----~~v~vw~~~~~~~ 201 (216)
+++++.....+ +...+-|+.+.|||+++++|-+--+ ..|+++|+..++.
T Consensus 415 ~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 415 KVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred EEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 99999887776 3445679999999999999976555 4789999987664
No 280
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=3.2e-07 Score=71.30 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=76.3
Q ss_pred cccceEEEEEccCCCEEEEEcC-----CCcEEEEECCCC---ceEEEEeCCCC---c-c-------------cCc--EEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGF-----HGLVQNRDTSSR---NLQCTVEGPRG---G-I-------------EDS--TVW 65 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~-----d~~v~vwd~~~~---~~~~~~~~~~~---~-~-------------~~~--~v~ 65 (216)
..+.....+|||||+.|+..+. +-.+..|++..+ +.......... . . .++ .++
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly 308 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIY 308 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 3445567899999998886553 223445776642 22222211111 0 1 233 344
Q ss_pred EEECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEecCC---CeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 66 MWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN---ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 66 i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
++++.. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++...... ....
T Consensus 309 ~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~----------------~~~~ 372 (428)
T PRK01029 309 IMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT----------------SPEN 372 (428)
T ss_pred EEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC----------------CCCC
Confidence 444432 22233444444567789999999988876543 469999999886543322 2234
Q ss_pred eEEEEeCCCCcEEEEec
Q 043942 142 VTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~ 158 (216)
+....|+|||+.|+...
T Consensus 373 ~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 373 KESPSWAIDSLHLVYSA 389 (428)
T ss_pred ccceEECCCCCEEEEEE
Confidence 56789999999877543
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.90 E-value=1.2e-06 Score=63.89 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=97.4
Q ss_pred eEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942 17 FSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK 95 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 95 (216)
+.+..+.|++++|++.+. --.|.+|++.++..... ....+ ......+-|.|+|+++
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~----------------------~~~~v-~~G~GPRHi~FHpn~k 203 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPA----------------------DPAEV-KPGAGPRHIVFHPNGK 203 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccc----------------------ccccc-CCCCCcceEEEcCCCc
Confidence 788899999998888763 22455555543332111 01112 2445678999999999
Q ss_pred EEEEec-CCCeEEEEeCCCC-ce---eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe-E------
Q 043942 96 TICTGS-DNATLSIWNPKGG-EN---FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK-V------ 163 (216)
Q Consensus 96 ~l~t~~-~d~~i~~wd~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-i------ 163 (216)
+....+ -+++|.+|..... .. ++.+..-+..+. ......++..+++|++|+++..-.. |
T Consensus 204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~---------g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT---------GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC---------CCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 886655 6899999998874 22 222221111111 3445677888999999988765322 2
Q ss_pred ------------EeeeCCEEEEEEecCCCeEEEEeCC-CcEEEEEccc
Q 043942 164 ------------DGHIDAIQSLSVSAIRESLVSVSVD-GTARVFEIAE 198 (216)
Q Consensus 164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d-~~v~vw~~~~ 198 (216)
..+......+.++|.|++|+++.++ ..|.+|....
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 2333446889999999999988875 5789998765
No 282
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=8.9e-08 Score=76.22 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=102.8
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 94 (216)
+.++|++++ ++.|+-|.-+|.|++.+.. +.+ .+...|... ..+|
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~---------------------------~~~-~~~~~~s~~------~~~G 83 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ---------------------------GNP-KTNFDHSSS------ILEG 83 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC---------------------------Ccc-ccccccccc------ccCC
Confidence 445666665 4688888877777666643 111 222234332 5579
Q ss_pred cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-----CcEEEEecccCeE------
Q 043942 95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-----SKYLVTGCVDGKV------ 163 (216)
Q Consensus 95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~~~i------ 163 (216)
.++++|+.||+|.+-.+.+.+....+. ...++.+++++|+ .+.+++|+..|.+
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~~~~~d----------------f~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~w 147 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDEITQYD----------------FKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNW 147 (846)
T ss_pred ceEEEecCCCcEEEeeccCCccceeEe----------------cCCcceeEEeccchhhhhhhheeecCcceEEEehhhh
Confidence 999999999999999999888887776 5678999999997 5678899988855
Q ss_pred ---------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 164 ---------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 164 ---------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
....++|.++.| .|+++|-++.+| |+|||+...+.+..+|.
T Consensus 148 lgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 148 LGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred hcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCC
Confidence 344689999999 788888887665 79999998887765543
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.86 E-value=8.8e-07 Score=75.83 Aligned_cols=172 Identities=12% Similarity=0.076 Sum_probs=102.2
Q ss_pred eEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942 17 FSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK 95 (216)
Q Consensus 17 v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 95 (216)
.+.++++| ++.++++.+.++.|++||..++... .+.+ ++.....+ +.. . ....-.....++++|+++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G------~G~~~~~~---g~~-~-~~~~~~~P~GIavspdG~ 752 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG------DGYERNLN---GSS-G-TSTSFAQPSGISLSPDLK 752 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec------CCccccCC---CCc-c-ccccccCccEEEEeCCCC
Confidence 35789999 5666777777889999998665432 1111 01000000 000 0 001123467899999988
Q ss_pred EE-EEecCCCeEEEEeCCCCceeEEeeccccc------cc-ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942 96 TI-CTGSDNATLSIWNPKGGENFHAIRRSSLE------FS-LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---- 163 (216)
Q Consensus 96 ~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---- 163 (216)
.| ++-+.++.|++||+.++............ +. ..... ....-.....++++++|..+++-..++.|
T Consensus 753 ~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g-~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD 831 (1057)
T PLN02919 753 ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG-SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLD 831 (1057)
T ss_pred EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch-hhhhccCCceeeEeCCCcEEEEECCCCEEEEEE
Confidence 54 55567799999999876532211110000 00 00000 00011234578889999887777777776
Q ss_pred ---------Ee--------------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 164 ---------DG--------------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 164 ---------~~--------------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.+ .-.....++++++|+.+++-+.++.|++||+.+++.
T Consensus 832 ~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 832 PATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00 112467899999999888888899999999988654
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=8.8e-08 Score=73.26 Aligned_cols=103 Identities=15% Similarity=0.248 Sum_probs=79.1
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
.++|.++.|+|+|+.|+.+-.- .-..+.+||++ +.++..+ ..++-+++-|+|.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGf------------------------MPAkvtifnlr-~~~v~df--~egpRN~~~fnp~ 322 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGF------------------------MPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPH 322 (566)
T ss_pred CCCceEEEECCCCCEEEEEEec------------------------ccceEEEEcCC-CCEeEeC--CCCCccceEECCC
Confidence 6899999999999887765421 34556666665 4444443 4566789999999
Q ss_pred CcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 94 GKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 94 ~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
|++++.++. -|.|-+||+.+.+.+..+.. ..-+-+.|+|||++|+++..-
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----------------~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----------------ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccchhhcccccc-----------------CCceEEEEcCCCcEEEEEecc
Confidence 999998874 48899999999888877754 445678999999999998765
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.9e-07 Score=71.71 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=66.6
Q ss_pred CCeeEEEEcCCCcEEEEec---CCCeEEEEeCCC-Cc---eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 83 SGLTCGDFTTDGKTICTGS---DNATLSIWNPKG-GE---NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
..|...+|.|.|+.+++-+ ...++.+|.+++ .. .+..+ .....+.+.|+|.|++++
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-----------------dk~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-----------------DKKFANTVFWSPKGRFVV 508 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh-----------------cccccceEEEcCCCcEEE
Confidence 4577889999998776654 345678887773 21 12222 234567899999999988
Q ss_pred Eecc---cCeE---------------EeeeCCEEEEEEecCCCeEEEEeC------CCcEEEEEccc
Q 043942 156 TGCV---DGKV---------------DGHIDAIQSLSVSAIRESLVSVSV------DGTARVFEIAE 198 (216)
Q Consensus 156 ~~~~---~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~------d~~v~vw~~~~ 198 (216)
.+.. .|.+ ..| ...+.+.|+|.|+|+++++. |.--++|++..
T Consensus 509 va~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 509 VAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred EEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 7644 4444 222 34578999999999999874 45567887753
No 286
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=8.7e-07 Score=68.62 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=83.4
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
..+......|+|||+.++...... .+..|+++|+.++.. ..+..+........|+|
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~-----------------------g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SP 286 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPK-----------------------GQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVE 286 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccC-----------------------CCcEEEEEECCCCcE-EEcccCCCccCccEECC
Confidence 444455677888887666443211 345677777766653 33443443344568999
Q ss_pred CCcEEEEecC-CC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC--------
Q 043942 93 DGKTICTGSD-NA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG-------- 161 (216)
Q Consensus 93 ~~~~l~t~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-------- 161 (216)
||+.|+..+. .+ .|.+.|+.+++....... .. ....|+|+|+.++......
T Consensus 287 DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~----------------g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~ 348 (419)
T PRK04043 287 DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH----------------GK--NNSSVSTYKNYIVYSSRETNNEFGKNT 348 (419)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEeCccC----------------CC--cCceECCCCCEEEEEEcCCCcccCCCC
Confidence 9988776653 22 588888887665333221 11 1237899999877655432
Q ss_pred -eE------------EeeeCCEEEEEEecCCCeEEEEeCC-C--cEEEEEccc
Q 043942 162 -KV------------DGHIDAIQSLSVSAIRESLVSVSVD-G--TARVFEIAE 198 (216)
Q Consensus 162 -~i------------~~~~~~i~~~~~~~~~~~l~s~~~d-~--~v~vw~~~~ 198 (216)
.+ ...........|+|||+.|+..+.+ + .+.+.++..
T Consensus 349 ~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 349 FNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 23 0001123357899999988765543 3 355666644
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.82 E-value=1.2e-08 Score=74.83 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=70.7
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG 88 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~ 88 (216)
.+-||-.-++.++|+||++.++++..|..|+|-....... ++ .-+-||..-|..+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~--------------------Ie-----sfclGH~eFVS~i 200 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV--------------------IE-----SFCLGHKEFVSTI 200 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc--------------------hh-----hhccccHhheeee
Confidence 4458999999999999999999999999888765442211 11 1234799999999
Q ss_pred EEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942 89 DFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS 123 (216)
Q Consensus 89 ~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 123 (216)
+.-++ ..|++++.|+++++||+++|+.+..+...
T Consensus 201 sl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 201 SLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred eeccC-ceeeecCCCCcEEEEecccCCcccccchh
Confidence 98764 56999999999999999999998777653
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1e-08 Score=78.69 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=90.9
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC-CCCc--------------------ccC
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG-PRGG--------------------IED 61 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~--------------------~~~ 61 (216)
+..+..+++.|+.+|.++.|-.+-++++++ ||.+++||.--+..+..... +..+ ...
T Consensus 773 tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae 850 (1034)
T KOG4190|consen 773 TSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE 850 (1034)
T ss_pred cceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch
Confidence 445778889999999999999988888775 67899999876655442221 1111 167
Q ss_pred cEEEEEECCCcceeeeee-----ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 62 STVWMWNADRGAYLNMFS-----GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.+|+++|.+.......++ +.++.+.+++..+.|+.++.+-..|.|.+.|.++|+.+.....
T Consensus 851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 889999998776554443 4556789999999999999999999999999999997776554
No 289
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=4.4e-08 Score=73.80 Aligned_cols=191 Identities=16% Similarity=0.199 Sum_probs=124.0
Q ss_pred EEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeC--CCCc--c-------------------cCcE
Q 043942 8 SEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGG--I-------------------EDST 63 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~--~-------------------~~~~ 63 (216)
..+..|.++|.-++.-|+. ..|.+++.|+.+.-.|++.......+.. .... + .+-.
T Consensus 226 ~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf 305 (559)
T KOG1334|consen 226 KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQF 305 (559)
T ss_pred eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhh
Confidence 3455799999999999966 5699999999999999887643322211 1111 0 5666
Q ss_pred EEEEECCCcce------eeeee------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942 64 VWMWNADRGAY------LNMFS------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY 131 (216)
Q Consensus 64 v~i~d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 131 (216)
+++||.+.-.. +.++. ...-.|++++|+.++.-++++..|-.|+++.-.-+.-....+..... ...
T Consensus 306 ~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~--~~~ 383 (559)
T KOG1334|consen 306 ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPRE--QYV 383 (559)
T ss_pred hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchh--hcc
Confidence 78888764221 12221 12346899999988888888888889999954322110000000000 000
Q ss_pred eEEEeeee--cCeEEEEe-CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 132 WMICTSLY--DGVTCLSW-PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 132 ~~~~~~~~--~~v~~~~~-~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
..+..+|. ..|..+-| .|...|+++|+..|.| .+...-|.++.=+|.-..||++|-|..|+||
T Consensus 384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred chhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeee
Confidence 01111232 33666655 7899999999999998 3334478888889999999999999999999
Q ss_pred Eccccc
Q 043942 195 EIAEFR 200 (216)
Q Consensus 195 ~~~~~~ 200 (216)
-..+.+
T Consensus 464 TP~~~e 469 (559)
T KOG1334|consen 464 TPLTAE 469 (559)
T ss_pred cCCccc
Confidence 874433
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.4e-08 Score=73.77 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=121.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeC---CCC---------cc--------cCcE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEG---PRG---------GI--------EDST 63 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~---~~~---------~~--------~~~~ 63 (216)
+.+..+..|...|.+++.+-+|.++.|.+. |..++++|+++-....-++. +.. .+ .++.
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~ 123 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGK 123 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCC
Confidence 345667788899999999999999999777 99999999887544422211 111 00 7888
Q ss_pred EEEEECCCcc--eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecC
Q 043942 64 VWMWNADRGA--YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 64 v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
+.++|-.... ....-.-|..+|.++.++|.+..+++....|.|..|.... ...++.
T Consensus 124 i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~---~~qfPr------------------- 181 (558)
T KOG0882|consen 124 IFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG---PFQFPR------------------- 181 (558)
T ss_pred cEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC---cccCcc-------------------
Confidence 8999977433 2233345889999999999999999999999999998773 111111
Q ss_pred eEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
..+.|.+.....+.+. ........++.|+|+|..+.+-+.|..|+++.+++++..+.+
T Consensus 182 -~~l~~~~K~eTdLy~f-----~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 182 -TNLNFELKHETDLYGF-----PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred -ccccccccccchhhcc-----cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 1122222211111110 223456789999999999999999999999999998876554
No 291
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.74 E-value=4.3e-07 Score=70.30 Aligned_cols=79 Identities=16% Similarity=0.064 Sum_probs=62.2
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT 91 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 91 (216)
.....|.|++++|+.+.|+.|+.||.|.+||...+. ..+....-.++.++|+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----------------------------t~~~ka~~~P~~iaWH 308 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----------------------------TLLAKAEFIPTLIAWH 308 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----------------------------eeeeeecccceEEEEc
Confidence 466789999999999999999988888888865331 1111234457899999
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCceeE
Q 043942 92 TDGKTICTGSDNATLSIWNPKGGENFH 118 (216)
Q Consensus 92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~ 118 (216)
|+|..+++|+..|.+.+||+.-.....
T Consensus 309 p~gai~~V~s~qGelQ~FD~ALspi~~ 335 (545)
T PF11768_consen 309 PDGAIFVVGSEQGELQCFDMALSPIKM 335 (545)
T ss_pred CCCcEEEEEcCCceEEEEEeecCccce
Confidence 999999999999999999998554433
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=8e-09 Score=83.20 Aligned_cols=180 Identities=14% Similarity=0.211 Sum_probs=126.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcE------------EEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDST------------VWM 66 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~------------v~i 66 (216)
+.+++++.|....+|++|+-+.+.|+.|+-.|.|++++..+|.......+|..++ .||. ..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 4567788899999999999999999999999999999999999999998888876 3333 345
Q ss_pred EECC-CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 67 WNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 67 ~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
|++. ++.+.+++.. -.++.|+.....-+.|+......+||+.++....++-..... ..-.-+..
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~-----------~~y~~n~a 1236 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVT-----------SSYSNNLA 1236 (1516)
T ss_pred hccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchh-----------hhhhcccc
Confidence 6654 3344444432 357788775555555665567999999999877664321111 12223677
Q ss_pred EeCCCCcEEEEecccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942 146 SWPGTSKYLVTGCVDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
.|+|+...++ .||.+ .... --..-.|+|+|..++.-+ -|||+++++.+...|..
T Consensus 1237 ~FsP~D~LIl---ndGvLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1237 HFSPCDTLIL---NDGVLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ccCCCcceEe---eCceeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc
Confidence 8999888775 45555 1111 112346899998888765 48999998887766653
No 293
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=1.1e-07 Score=75.17 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=110.2
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--------------CC--cc--cCcEEEEEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--------------RG--GI--EDSTVWMWN 68 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--------------~~--~~--~~~~v~i~d 68 (216)
-+++.||.+.|.-+.|+.+.+.|-|...+|.|.||-+..+......-.. .. ++ .||.|.+=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 4678999999999999999999999999999999998766322111111 11 11 455554444
Q ss_pred CCCccee-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 69 ADRGAYL-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 69 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+...+.- ..++ ......+.|++|.+.++.+-..|.+.++|.... ....+...... +....+......+..+.|
T Consensus 144 vdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~~c~V---n~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 144 VDGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEKDCEV---NGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred eccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhhceEE---eeeeeecCCCccccceee
Confidence 3322111 0111 123457889999998888888999999997632 11111110000 000011112223445555
Q ss_pred --------CCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942 148 --------PGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 148 --------~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d 188 (216)
.|+...++++..+|.+ ......+..+.|+++|..|+.|+.|
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 3578889999999887 2233678999999999999998864
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.66 E-value=7.5e-06 Score=69.22 Aligned_cols=169 Identities=16% Similarity=0.278 Sum_probs=101.3
Q ss_pred cccceEEEEEccCCCEEEEEcC------CCcEEEEECCCCceEEEEeCCCCcc--------------------cCcEEEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGF------HGLVQNRDTSSRNLQCTVEGPRGGI--------------------EDSTVWM 66 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~~~~v~i 66 (216)
+.+.-..++|-.||++||+.+. -..+|||+-+ |+...+-+ +..+. ....|.+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence 3445568999999999998874 2578999976 43322222 11110 3455566
Q ss_pred EECCC---cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecC
Q 043942 67 WNADR---GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 67 ~d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
|.-+. |+....+......|..+.|++|+..||....|. |.+|-..+-.- .+++.... ...
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~--------------~~~ 350 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS--------------SES 350 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC--------------CCC
Confidence 65432 221122223456799999999999999977665 99999887542 33333211 111
Q ss_pred eEEEEeCCCC-cEEEEecccCeE-------------------------------------------------EeeeCCEE
Q 043942 142 VTCLSWPGTS-KYLVTGCVDGKV-------------------------------------------------DGHIDAIQ 171 (216)
Q Consensus 142 v~~~~~~~~~-~~l~~~~~~~~i-------------------------------------------------~~~~~~i~ 171 (216)
+..+.|+|.. ..|...+.+|.+ .....+|.
T Consensus 351 ~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~ 430 (928)
T PF04762_consen 351 VNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVN 430 (928)
T ss_pred CCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcE
Confidence 1223333321 112222221111 33457899
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 172 SLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 172 ~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+++|++++..+++-..||.+.+|....
T Consensus 431 ~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 431 DVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 999999998888888999999998544
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=2.3e-06 Score=68.47 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=85.8
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------------------cCcEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------------------EDSTV 64 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------------------~~~~v 64 (216)
|...-.++.|+|.| +||-|+ ...|.+-|..+.+.++.++.|...+ -.|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33446688999977 666666 5578899999988888888777654 67899
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcC---CC-cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTT---DG-KTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.+||...+..+..+..|...+..+.|-+ +. ..|+.-....++-+|+..+|...-....
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y 153 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY 153 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc
Confidence 9999999888888888889999999976 33 4677777888999999999987765554
No 296
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.8e-07 Score=69.55 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=99.4
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942 18 SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI 97 (216)
Q Consensus 18 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 97 (216)
+-+.|||-|.||+|--.-| |.+|--.....++.+. |.+ |.-+.|||+.++|
T Consensus 214 tyv~wSP~GTYL~t~Hk~G---------------------------I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYL 264 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG---------------------------IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYL 264 (698)
T ss_pred eeEEecCCceEEEEEeccc---------------------------eeeecCccHHHHHhcc-CCC-ceeeecCCccceE
Confidence 4678999999999977544 4455555555555665 766 8899999999999
Q ss_pred EEecC-----------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---
Q 043942 98 CTGSD-----------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--- 163 (216)
Q Consensus 98 ~t~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--- 163 (216)
+|=+. ...+.+||+++|.....+..... ....-.-+.||.|++++|....++..
T Consensus 265 VT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------------~~~~WP~frWS~DdKy~Arm~~~sisIyE 332 (698)
T KOG2314|consen 265 VTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------------PYLKWPIFRWSHDDKYFARMTGNSISIYE 332 (698)
T ss_pred EEecCCccccCcccCCCceEEEEEccccchhcceeccCC------------CccccceEEeccCCceeEEeccceEEEEe
Confidence 98552 26799999999998887765110 11112346899999999988777654
Q ss_pred ----------EeeeCCEEEEEEecCCCeEEEEeCC-----CcEEEEEcccccce
Q 043942 164 ----------DGHIDAIQSLSVSAIRESLVSVSVD-----GTARVFEIAEFRRA 202 (216)
Q Consensus 164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d-----~~v~vw~~~~~~~~ 202 (216)
.-.-..|....|+|.++.||--... ..+.+-.+.+.+.+
T Consensus 333 tpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 333 TPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred cCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 2234578899999999888854321 34455555544433
No 297
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.53 E-value=3.9e-07 Score=44.81 Aligned_cols=39 Identities=36% Similarity=0.572 Sum_probs=35.7
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRD 42 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 42 (216)
++++..+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 567888899999999999999999999999999999986
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.51 E-value=0.00019 Score=54.05 Aligned_cols=154 Identities=8% Similarity=-0.056 Sum_probs=96.9
Q ss_pred CcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEEEECCCcceeeeeeccC-------CC
Q 043942 36 GLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWMWNADRGAYLNMFSGHG-------SG 84 (216)
Q Consensus 36 ~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i~d~~~~~~~~~~~~~~-------~~ 84 (216)
+.|.+.|..+++.+.++.....+. .+..|.+||..+.+.+..+.... ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 789999999998888776532221 57889999999999988876422 22
Q ss_pred eeEEEEcCCCcEEEEec-C-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-EecccC
Q 043942 85 LTCGDFTTDGKTICTGS-D-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TGCVDG 161 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~ 161 (216)
...++++|||+++++.. . +..|.+.|+.+++.+.++..... .... ....-..+....||..+. +-..+|
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~----~~vy----~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC----YHIF----PTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC----cEEE----EecCCccEEEeecCceEEEEecCCC
Confidence 34789999999998776 4 79999999999999988875211 1000 011112223345555443 223333
Q ss_pred eEEeeeCCEE---------EEEEec-CCCeEEEEeCCCcEEEEEccc
Q 043942 162 KVDGHIDAIQ---------SLSVSA-IRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 162 ~i~~~~~~i~---------~~~~~~-~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.......++. .-.|.+ +|+++....+ |+|.+-|+..
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~ 224 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSS 224 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCC
Confidence 3311111110 013455 7877766655 9999999643
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.50 E-value=0.00013 Score=56.05 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCe-----
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGL----- 85 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v----- 85 (216)
++..++.++.++.+..+|..+++............ .++.++.||.++++.+..........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 46678888889999999999998876654332111 68889999999998876665332211
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 120 (216)
.+... .+..++.+..++.+..+|.++|+.+...
T Consensus 184 ~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 184 ASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 11111 1346778888999999999999876544
No 300
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.49 E-value=3.6e-07 Score=72.58 Aligned_cols=170 Identities=15% Similarity=0.299 Sum_probs=110.6
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ce---EEEEeC----------CCCcc------cCcEEEEEECCC--
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NL---QCTVEG----------PRGGI------EDSTVWMWNADR-- 71 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~---~~~~~~----------~~~~~------~~~~v~i~d~~~-- 71 (216)
.+++..+..+|.|+-+|.++.-| +.+-|+... .. +..+.. |.... ....-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 46788999999999999988766 445565443 22 111111 11100 444556777653
Q ss_pred -cceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 72 -GAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 72 -~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
......+.+|...|+.+.|+|.. ..+++++.|-.+..||+++... +..+.. .......++|+
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~---------------w~s~asqVkwn 167 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS---------------WRSAASQVKWN 167 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec---------------ccccCceeeec
Confidence 23445567899999999999854 5789999999999999998653 334433 44556677776
Q ss_pred C-CCcEEEEecccC-eE-------------EeeeCCEEEEEEecC-CCeEEEEeCCCcEEEEEcccc
Q 043942 149 G-TSKYLVTGCVDG-KV-------------DGHIDAIQSLSVSAI-RESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 149 ~-~~~~l~~~~~~~-~i-------------~~~~~~i~~~~~~~~-~~~l~s~~~d~~v~vw~~~~~ 199 (216)
. ++..+++...+. .+ .+|...|..++|..- ...+.+++.|++|+.||....
T Consensus 168 yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 168 YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 5 334443322211 11 556677777777542 345788999999999998753
No 301
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.48 E-value=3.6e-06 Score=65.38 Aligned_cols=66 Identities=15% Similarity=0.321 Sum_probs=56.6
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
....+.+.+++|+...++.|+.||.|.+||...+..... . ..-.++.++|+|+|.++++|+..
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----------------a~~~P~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----------------AEFIPTLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----------------ecccceEEEEcCCCcEEEEEcCC
Confidence 567899999999999999999999999999886643322 2 44667899999999999999999
Q ss_pred CeE
Q 043942 161 GKV 163 (216)
Q Consensus 161 ~~i 163 (216)
|.+
T Consensus 321 Gel 323 (545)
T PF11768_consen 321 GEL 323 (545)
T ss_pred ceE
Confidence 988
No 302
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.48 E-value=0.0002 Score=61.89 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=104.2
Q ss_pred EEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEEEeC-CC----------------Ccc--------------cCcEEE
Q 043942 18 SSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCTVEG-PR----------------GGI--------------EDSTVW 65 (216)
Q Consensus 18 ~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~----------------~~~--------------~~~~v~ 65 (216)
..++++++ ++++++-...+.|+++|... +.+..+.. .. .++ .+..|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788874 66777777888999999764 44433322 10 000 233455
Q ss_pred EEECCCcceeeeeecc-----------------CCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccc
Q 043942 66 MWNADRGAYLNMFSGH-----------------GSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEF 127 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 127 (216)
.+|..++. +.++.+- -.....++++| ++..+++.+.++.|++||..++... .+.......
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 55554432 2222110 11346799999 5666777778899999999876543 222211000
Q ss_pred cccceEEEeeeecCeEEEEeCCCCcEEEE-ecccCeEE------------ee-----------------------eCCEE
Q 043942 128 SLNYWMICTSLYDGVTCLSWPGTSKYLVT-GCVDGKVD------------GH-----------------------IDAIQ 171 (216)
Q Consensus 128 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~~i~------------~~-----------------------~~~i~ 171 (216)
.................++++|++..+++ -+.++.|. .. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00000000001234567888998875444 34445550 00 01235
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 172 SLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 172 ~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.++++++|+.+++-+.++.|++||..++..
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v 837 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRV 837 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeE
Confidence 889999999888888899999999876543
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.2e-06 Score=63.67 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=68.9
Q ss_pred CceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccC
Q 043942 4 GDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHG 82 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 82 (216)
|.+.+.+ -|...|+++..-. ++++|.+.+.+|+|++||++--+. +.-+.++++|.
T Consensus 289 ~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-----------------------~~~V~qYeGHv 344 (425)
T KOG2695|consen 289 GWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-----------------------KKSVMQYEGHV 344 (425)
T ss_pred CcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-----------------------ccceeeeeccc
Confidence 4455555 4888899988776 778888888888877777664332 22355666775
Q ss_pred CCee--EEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942 83 SGLT--CGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS 123 (216)
Q Consensus 83 ~~v~--~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 123 (216)
+.-. -+...+....+++++.|...++|.++.+..+.+++..
T Consensus 345 N~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 345 NLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 4322 2334566778889999999999999999999888753
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=4.2e-05 Score=61.59 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=87.0
Q ss_pred CCceeEEeeccccceEEEEEccCC------------CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDG------------QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------- 59 (216)
+.+.++.+..|+..|+.+.|.|-. -+||++...|.|.+||...+..+..++.+..++
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 346778888999999999998721 157788888999999999887777766665544
Q ss_pred ---------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCC
Q 043942 60 ---------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 60 ---------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~ 112 (216)
..+++.+|+..+|+.+.....-.....|+.+.| |.+.+..-+..|.+.+-+.-
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 678899999999999888776667788899999 66777777777777776653
No 305
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.45 E-value=2.6e-05 Score=64.12 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=79.9
Q ss_pred cCCCcEEEEECCCCceEEEEeCCCCc-c---------------------cCcEEEEEECCCc-ceeeeee----ccCCCe
Q 043942 33 GFHGLVQNRDTSSRNLQCTVEGPRGG-I---------------------EDSTVWMWNADRG-AYLNMFS----GHGSGL 85 (216)
Q Consensus 33 ~~d~~v~vwd~~~~~~~~~~~~~~~~-~---------------------~~~~v~i~d~~~~-~~~~~~~----~~~~~v 85 (216)
.....++-.|++.|+.+..+..+... + .++.+..||++-. ..+..-. ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34577888899999998888776644 2 8888999999853 2221111 133457
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG 161 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 161 (216)
+|++-..+| +||+|+.+|.|++||-- |+. ...++. ...+|..+..+.||+++++.+..-
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~---------------lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPG---------------LGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCC---------------CCCCeeEEEecCCCcEEEEeecce
Confidence 788777665 79999999999999943 433 233333 679999999999999987655443
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=2.7e-06 Score=68.92 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=42.8
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
.-|.+.+|..++.+.-.....|..+|..+.|+++|..++|+..-|.+.+|...
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45556666666555544556699999999999999999999999999999876
No 307
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.41 E-value=8.8e-06 Score=68.10 Aligned_cols=171 Identities=10% Similarity=0.087 Sum_probs=98.2
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC------CCcc---cCcEEEEEECCCc-----ceeeee
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP------RGGI---EDSTVWMWNADRG-----AYLNMF 78 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~~---~~~~v~i~d~~~~-----~~~~~~ 78 (216)
-...|.+++||||++.++..+..+++.+-.- +-.++.....+ ...+ ..+.=.-+....| +++...
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 3468999999999999998888777655332 11111111110 0000 0000001111111 000000
Q ss_pred e--c---cCCCeeEEEEcCCCcEEEEe-----cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 79 S--G---HGSGLTCGDFTTDGKTICTG-----SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 79 ~--~---~~~~v~~~~~~~~~~~l~t~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
+ + ..+.=+++.|.-||.++++. ...+.|++||-+ |.....-.. ....-.+++|-
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~---------------~~~l~~~LsWk 250 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP---------------VEGLQHSLSWK 250 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc---------------ccccccceeec
Confidence 0 0 11223579999999999883 333899999977 543332222 33445678999
Q ss_pred CCCcEEEEecc---cCeE-----------------EeeeCCEEEEEEecCCCeEEE---EeCCCcEEEEEccccc
Q 043942 149 GTSKYLVTGCV---DGKV-----------------DGHIDAIQSLSVSAIRESLVS---VSVDGTARVFEIAEFR 200 (216)
Q Consensus 149 ~~~~~l~~~~~---~~~i-----------------~~~~~~i~~~~~~~~~~~l~s---~~~d~~v~vw~~~~~~ 200 (216)
|.|..+++... ++.| ......+..++|+.++..|+. ......|++|-+.+..
T Consensus 251 Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 251 PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 99999887543 3333 112234899999999999886 4445559999887743
No 308
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.40 E-value=0.00014 Score=55.86 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCeeE-EE
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGLTC-GD 89 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~-~~ 89 (216)
.+..++.++.++.+..+|..+++.+.......... .++.++.+|..+|+.+...... +.+.+ ..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~ 142 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPL 142 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCE
Confidence 46688888899999999999998877655433211 6788999999999887665432 22221 11
Q ss_pred EcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
. .+..++.++.++.+..||.++|+.+-.+..
T Consensus 143 v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 143 V--ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred E--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 1 345677778899999999999988776654
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.40 E-value=2.1e-06 Score=60.21 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=48.6
Q ss_pred cCeEEEEeCCCCcE-EEEecccCeE---------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEccc
Q 043942 140 DGVTCLSWPGTSKY-LVTGCVDGKV---------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 140 ~~v~~~~~~~~~~~-l~~~~~~~~i---------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~ 198 (216)
..|.+++-+|..+. +++|+.||.+ ..|..+++.+.|+| ++..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 44888998986654 5566777766 78999999999999 568999999999999999763
No 310
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.38 E-value=3.1e-05 Score=54.80 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=79.6
Q ss_pred cCcEEEEEECCCccee-eeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 60 EDSTVWMWNADRGAYL-NMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
..|...+|...+.+.. .....|...|+-+.=.- ...-+..++.|+++++.++.-+........
T Consensus 92 ~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~--------------- 156 (344)
T KOG4532|consen 92 ASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN--------------- 156 (344)
T ss_pred ccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec---------------
Confidence 5567777777754432 22333433332221111 123466678888888888875544333321
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
..-.+.++.++++++++++.++...+ ......=-+..|+.+...+|++.+||++.|||++...
T Consensus 157 ~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 157 QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred cccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 11237888999999999988887766 1111222456788888999999999999999998744
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.34 E-value=0.00045 Score=50.60 Aligned_cols=151 Identities=13% Similarity=0.152 Sum_probs=92.6
Q ss_pred CCceeEEeeccccce--EEEEEccCCCEEEEEcC-----CCcEEEEECC-CCceEEEEeCCCCcc---------------
Q 043942 3 QGDWASEILGHKDSF--SSLAFSTDGQLLASGGF-----HGLVQNRDTS-SRNLQCTVEGPRGGI--------------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v--~~~~~s~~~~~l~s~~~-----d~~v~vwd~~-~~~~~~~~~~~~~~~--------------- 59 (216)
+|+..+.+....+.- ---.||+||++|++.-. .|.|-|||.. +.+.+.++..+.-..
T Consensus 37 ~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 37 TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 455555554322221 13589999999998744 4889999998 445555554322111
Q ss_pred -------------------cCcEEEEEECCCcceeeeee----ccCCCeeEEEEcCCCcEEEEecCCCe-------EEEE
Q 043942 60 -------------------EDSTVWMWNADRGAYLNMFS----GHGSGLTCGDFTTDGKTICTGSDNAT-------LSIW 109 (216)
Q Consensus 60 -------------------~~~~v~i~d~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~t~~~d~~-------i~~w 109 (216)
.+.++.+.|..+|+.+.+.. .|...+.-+++.++|..++..-..+. +.++
T Consensus 117 NGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~ 196 (305)
T PF07433_consen 117 NGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH 196 (305)
T ss_pred cCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE
Confidence 66777788888888776633 36678999999999876665543322 3333
Q ss_pred eCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 110 NPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 110 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
+ .+..+..+....... ......+-++++++++.++++.+..|..
T Consensus 197 ~--~g~~~~~~~~p~~~~--------~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 197 R--RGGALRLLPAPEEQW--------RRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred c--CCCcceeccCChHHH--------HhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 3 222222222211000 0145778999999999988877776654
No 312
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=1.2e-05 Score=65.50 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=99.1
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------cCcEEEEEECCCc
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------EDSTVWMWNADRG 72 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------~~~~v~i~d~~~~ 72 (216)
.|.-+.. ++++|.+|...|+|.+-|.++.+.+.++..|.+.+ .|.-|+|||+++-
T Consensus 179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm 256 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM 256 (1118)
T ss_pred ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhh
Confidence 4544444 56899999999999999999999999999998876 7888999999987
Q ss_pred ceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCC---CCc-eeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 73 AYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPK---GGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
+.+.-+.-+.+ ..-+.|+|. ...+++++..|...+-|.. +.. ....+.. ....+..+++
T Consensus 257 ral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p---------------~~s~i~~fDi 320 (1118)
T KOG1275|consen 257 RALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP---------------NGSGISAFDI 320 (1118)
T ss_pred hccCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc---------------CCCcceeEEe
Confidence 76655554444 356778884 4578888899999999843 321 1222222 4455899999
Q ss_pred CCCCcEEEEecccCeE
Q 043942 148 PGTSKYLVTGCVDGKV 163 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i 163 (216)
++++..++.+..+|.+
T Consensus 321 Ssn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHV 336 (1118)
T ss_pred cCCCceEEEecccCcE
Confidence 9999999999999888
No 313
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.2e-06 Score=64.53 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=63.6
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee-EEEEcC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT-CGDFTT 92 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~-~~~~~~ 92 (216)
...|.-+.|+|.-.++|++..+|.|-+..++ .-++|++ .-|...++ +++|.|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n------------------~qRlwti---------p~p~~~v~~sL~W~~ 72 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN------------------WQRLWTI---------PIPGENVTASLCWRP 72 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec------------------cceeEec---------cCCCCccceeeeecC
Confidence 3468889999999999999988877776653 2234444 33444555 999999
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceeEEe
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENFHAI 120 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 120 (216)
||+.|+.|-.||+|++.|+.++..+..+
T Consensus 73 DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 73 DGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred CCCEEEEEecCCeEEEEEccCCCceecc
Confidence 9999999999999999999999887764
No 314
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.29 E-value=3.9e-06 Score=41.03 Aligned_cols=38 Identities=32% Similarity=0.685 Sum_probs=33.6
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWN 110 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd 110 (216)
++...+..|...|.++.|++++..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.4e-05 Score=59.35 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=59.4
Q ss_pred EeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942 9 EILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC 87 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~ 87 (216)
-+..|...|.+++|||..+ ++..++.+.+|+ |.|+++...+..+..+ ..+++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkik--------------------------i~dlet~~~vssy~a~-~~~wS 240 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIK--------------------------IMDLETSCVVSSYIAY-NQIWS 240 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEE--------------------------EEecccceeeeheecc-CCcee
Confidence 4556778899999999766 677777555554 5555555556666666 77999
Q ss_pred EEEcCCC-cEEEEecCCCeEEEEeCCCCc
Q 043942 88 GDFTTDG-KTICTGSDNATLSIWNPKGGE 115 (216)
Q Consensus 88 ~~~~~~~-~~l~t~~~d~~i~~wd~~~~~ 115 (216)
.+|.-|. ++|..|-..|.|.+||++..+
T Consensus 241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 241 CCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeeccCCcceeEEeccCceEEEEEccCCC
Confidence 9998765 466777799999999999653
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=6.9e-05 Score=60.46 Aligned_cols=111 Identities=14% Similarity=0.136 Sum_probs=75.1
Q ss_pred eeccccceEEEEEccC-------------CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC--cc---------------
Q 043942 10 ILGHKDSFSSLAFSTD-------------GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG--GI--------------- 59 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~-------------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--~~--------------- 59 (216)
|..|.+.|.-..+.-+ |++++||+.||+|.|-.+.+.+...++..+.. .+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv 133 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFV 133 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhhee
Confidence 4556666655555444 99999999999999999888765554433222 11
Q ss_pred ---cCcEEEEEECCC-ccee-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942 60 ---EDSTVWMWNADR-GAYL-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS 124 (216)
Q Consensus 60 ---~~~~v~i~d~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 124 (216)
..| +.++.-+- +... ..+..-.++|.++.|. |+++|-++.+| |++||+.+++.+..++.+.
T Consensus 134 ~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 134 SGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred ecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCC
Confidence 222 55554331 1111 1344566899999996 78999998887 9999999988887776643
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.24 E-value=3.8e-05 Score=59.50 Aligned_cols=122 Identities=13% Similarity=0.124 Sum_probs=73.5
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe-cCCCe--EEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG-SDNAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~-~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
..++++|+++++....+. ..+.-..-+|+|||+.|+.+ ..|+. |++.|+..+.... +.. .
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~---------------~ 280 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN---------------G 280 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc---------------C
Confidence 468888888776544443 33334567899999987654 45555 6777877666333 332 2
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeC-CCc--EEEEEcccc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSV-DGT--ARVFEIAEF 199 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~-d~~--v~vw~~~~~ 199 (216)
.+.-..-.|+|||+.++-.+..+-. ......-..-.|+|||++|+..+. +|. |.+.++.++
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 2222366789999988765544322 111112226678999999987764 344 555655444
Q ss_pred c
Q 043942 200 R 200 (216)
Q Consensus 200 ~ 200 (216)
.
T Consensus 361 ~ 361 (425)
T COG0823 361 G 361 (425)
T ss_pred C
Confidence 3
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.24 E-value=0.00051 Score=55.03 Aligned_cols=60 Identities=8% Similarity=0.019 Sum_probs=43.3
Q ss_pred ecCeEEEEeCCCCcEEEEecc-cCeE-------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEE
Q 043942 139 YDGVTCLSWPGTSKYLVTGCV-DGKV-------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTAR 192 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~-~~~i-------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~ 192 (216)
....-.+.++|||+++++++. +..+ ..-.......+|+++|+...|--.|..|-
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeE
Confidence 345567889999999887765 4443 01122345678999998777888899999
Q ss_pred EEEccc
Q 043942 193 VFEIAE 198 (216)
Q Consensus 193 vw~~~~ 198 (216)
.|++..
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999876
No 319
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.22 E-value=0.00099 Score=49.51 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=60.7
Q ss_pred EEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCCC-cc-------------cCcEEEEEE-----
Q 043942 18 SSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPRG-GI-------------EDSTVWMWN----- 68 (216)
Q Consensus 18 ~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~-~~-------------~~~~v~i~d----- 68 (216)
-.+..+|+++.+++++ ..-.|.+||..+.....++..+.. .. .++.+.++|
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 3467899999888764 234699999999999998877764 11 445555555
Q ss_pred ------CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCcee
Q 043942 69 ------ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENF 117 (216)
Q Consensus 69 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~ 117 (216)
+..++.+..+.- .+ +.+.+-...+.+.+-|.||.+....+. .|+..
T Consensus 119 SVtVVDl~~~kvv~ei~~-PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDT-PG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp EEEEEETTTTEEEEEEEG-TS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred eEEEEECCCCceeeeecC-CC--EEEEEecCCCceEEEecCCceEEEEECCCCCEe
Confidence 444454444431 22 112221123457788889999999888 45554
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00075 Score=55.21 Aligned_cols=178 Identities=13% Similarity=0.069 Sum_probs=107.4
Q ss_pred EEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------c-Cc-EEEEEECCCc------
Q 043942 21 AFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------E-DS-TVWMWNADRG------ 72 (216)
Q Consensus 21 ~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------~-~~-~v~i~d~~~~------ 72 (216)
+|++.+..++.|+.+|.|.+.+-.- +....++.....+ . +. .+++||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 5778888999999999887766321 2223333333221 1 33 7999998742
Q ss_pred cee--eeeec-----cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 73 AYL--NMFSG-----HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 73 ~~~--~~~~~-----~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
.++ ..+.. ...++.+++.+.+-+.+|.|-.+|.|..+.-+ ..+.... .. ........+|+.+
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD---i~RDrgs-r~-------~~~~~~~~pITgL 177 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD---ILRDRGS-RQ-------DYSHRGKEPITGL 177 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc---chhcccc-ce-------eeeccCCCCceee
Confidence 222 11222 24578899999999999999999999998532 1111100 00 0001156789999
Q ss_pred EeCCCCcE-EEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC-Ccc
Q 043942 146 SWPGTSKY-LVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP-SYS 209 (216)
Q Consensus 146 ~~~~~~~~-l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~-~~~ 209 (216)
.+..++.. ++++..+... ..|...+.+..+++....++.++ +..+.+|+....++...++ ++.
T Consensus 178 ~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 178 ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 98777665 3333333211 45566777777776555455444 5678999988766666665 444
Q ss_pred ee
Q 043942 210 FK 211 (216)
Q Consensus 210 ~~ 211 (216)
..
T Consensus 257 k~ 258 (933)
T KOG2114|consen 257 KE 258 (933)
T ss_pred EE
Confidence 33
No 321
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.15 E-value=0.0018 Score=50.40 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=65.7
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK 162 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 162 (216)
+++..++.||+++++|.-..+|.+.+...+-.+...++... .......+.|.-+...++.- .+..
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~--------------~~~~p~~~~WCG~dav~l~~-~~~l 281 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD--------------SKSPPKQMAWCGNDAVVLSW-EDEL 281 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC--------------cCCCCcEEEEECCCcEEEEe-CCEE
Confidence 56889999999999998888999988887655555555542 23455677776554443333 2211
Q ss_pred E-EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942 163 V-DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF 210 (216)
Q Consensus 163 i-~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~ 210 (216)
. .+..+ ..+.|..++..++..-.|| +||..-...+.+.+.|....
T Consensus 282 ~lvg~~~--~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp~~~~ 327 (410)
T PF04841_consen 282 LLVGPDG--DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVPDSTE 327 (410)
T ss_pred EEECCCC--CceEEeccCceEEeccCCc-eEEEeCCceEEEEECCHHHH
Confidence 1 11111 2234444555444444465 78877666666666665443
No 322
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.15 E-value=8.5e-05 Score=56.96 Aligned_cols=134 Identities=11% Similarity=0.101 Sum_probs=88.0
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT 91 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 91 (216)
+-.++|...+|.|+++.|++.+.- ....+.++|++.. . .+......=+.+-|+
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~------------------------~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fs 324 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGY------------------------MPASVSVFDLRGN-L--RFYFPEQKRNTIFFS 324 (561)
T ss_pred cccccceeeeecccCCceeEEecc------------------------cccceeecccccc-e--EEecCCccccccccc
Confidence 447899999999999888876621 3344445555533 2 222344455678899
Q ss_pred CCCcEEEEecCC---CeEEEEeCCCCceeE-EeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe-----
Q 043942 92 TDGKTICTGSDN---ATLSIWNPKGGENFH-AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK----- 162 (216)
Q Consensus 92 ~~~~~l~t~~~d---~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~----- 162 (216)
|.+++++.++-| |.+-+||........ .+. .....-+.|+|+++++.+....-.
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-----------------~~n~s~~~wspd~qF~~~~~ts~k~~~Dn 387 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-----------------GLNTSYCDWSPDGQFYDTDTTSEKLRVDN 387 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEee-----------------cCCceEeeccCCceEEEecCCCcccccCc
Confidence 999999998865 669999988544333 343 234456789999999887654332
Q ss_pred -E----E--eeeCCEEEEEEecCCCeEEEEeCCC
Q 043942 163 -V----D--GHIDAIQSLSVSAIRESLVSVSVDG 189 (216)
Q Consensus 163 -i----~--~~~~~i~~~~~~~~~~~l~s~~~d~ 189 (216)
+ . ......+.+.|.|.+++..+.+.+.
T Consensus 388 ~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 388 SIKLWDVYGAKVFELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ceEEEEecCchhhhhhhccccCCcccceeeccCC
Confidence 2 0 1112557788999888877766554
No 323
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.14 E-value=1.4e-05 Score=57.61 Aligned_cols=163 Identities=11% Similarity=0.120 Sum_probs=105.0
Q ss_pred eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942 11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDF 90 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 90 (216)
.+|...|++++|+.|.+.++++. |=.|.+|+++- .|+...|.|+... .+..-..-|++..|
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i--------------~D~sFnIVDiKP~----nmeeLteVItSaeF 229 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEI--------------IDGSFNIVDIKPH----NMEELTEVITSAEF 229 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccc--------------cCCceEEEeccCc----cHHHHHHHHhhccc
Confidence 57888999999999998888876 66788888764 4666666676522 12223356788899
Q ss_pred cC-CCcEEEEecCCCeEEEEeCCCCce------eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 91 TT-DGKTICTGSDNATLSIWNPKGGEN------FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 91 ~~-~~~~l~t~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
+| ....++-.+..|.|++-|++.... +......+.. ...+..-...|..+.|+++|+++++-+....-
T Consensus 230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~-----~~ff~eivsSISD~kFs~ngryIlsRdyltvk 304 (460)
T COG5170 230 HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD-----VDFFEEIVSSISDFKFSDNGRYILSRDYLTVK 304 (460)
T ss_pred CHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc-----chhHHHHhhhhcceEEcCCCcEEEEeccceEE
Confidence 99 456778888999999999984321 1111111100 00011134568889999999999875543211
Q ss_pred --------------Eee------------eCC---EEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 164 --------------DGH------------IDA---IQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 164 --------------~~~------------~~~---i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.-| ... =-.+.|+-|.+.+++|+..+..-++-+.
T Consensus 305 iwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 000 011 1346777788888888888877777643
No 324
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=0.00021 Score=51.28 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=85.8
Q ss_pred cCcEEEEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEE--------------------EeCCCCceeE
Q 043942 60 EDSTVWMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSI--------------------WNPKGGENFH 118 (216)
Q Consensus 60 ~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~--------------------wd~~~~~~~~ 118 (216)
..|.|-+||.+.+ +.+..+..|.-....+.|.+||+.++.+.. -|.. .|..+|..+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcCccEEEEeccccchhh
Confidence 5677888888743 556677788777889999999999988642 2333 2222222222
Q ss_pred EeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------------------EeeeCCEEE
Q 043942 119 AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------------------DGHIDAIQS 172 (216)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------------------~~~~~~i~~ 172 (216)
+.... ...+.-.+..++..+||...+.+-..|.- ....+.|-+
T Consensus 216 kh~Lp-----------~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs 284 (366)
T COG3490 216 KHTLP-----------ASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS 284 (366)
T ss_pred hccCc-----------hhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh
Confidence 11110 01155678889999999887766555433 122356778
Q ss_pred EEEecCCCeEEEEeCC-CcEEEEEcccccceeec
Q 043942 173 LSVSAIRESLVSVSVD-GTARVFEIAEFRRATKA 205 (216)
Q Consensus 173 ~~~~~~~~~l~s~~~d-~~v~vw~~~~~~~~~~~ 205 (216)
++.+.+..+++..+-. +...+||..++......
T Consensus 285 iA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 285 IAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred eeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 8888766766665554 55689999998866543
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=3.3e-05 Score=61.32 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=82.6
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
|...|.--+++..+++++.|+.-|.+++|+-..++... ....+-.+.+.....++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-------------------------~~~~~~~~~~~~~~vs~ 86 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-------------------------LKNEGATGITCVRSVSS 86 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-------------------------ccccCccceEEEEEecc
Confidence 44556666777788999999988888887765443221 11222345567778888
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
+..++|.|+..|.|.++-+..+.........+.. ..|...|++++|++++..+++|...|.+
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d---------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD---------KSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeecccc---------ccCCceEEEEEecccccEEeecCCCceE
Confidence 9999999999999999988864332211111100 0167899999999999999999999988
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.09 E-value=0.0027 Score=49.68 Aligned_cols=132 Identities=12% Similarity=0.079 Sum_probs=68.6
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------cCcEEEEEECCCcceeeee
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------~~~~v~i~d~~~~~~~~~~ 78 (216)
.+....-.+..+.++|+|+.++.++ ||.-.++.....+....-.+....- .+++|.++.--+......+
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence 3334445678999999999888855 7777777754433322211111100 3444555321111111122
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
+. ...+..+-. |..|...+.+ .|.+||..+++.+..+.. .+|..+.|++++++++..+
T Consensus 106 ~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----------------~~vk~V~Ws~~g~~val~t 163 (443)
T PF04053_consen 106 KL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV-----------------SAVKYVIWSDDGELVALVT 163 (443)
T ss_dssp ---SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS------------------E-EEEEE-TTSSEEEEE-
T ss_pred cC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec-----------------CCCcEEEEECCCCEEEEEe
Confidence 21 112333322 7777776554 899999999999998864 2489999999999999888
Q ss_pred ccCeE
Q 043942 159 VDGKV 163 (216)
Q Consensus 159 ~~~~i 163 (216)
.+...
T Consensus 164 ~~~i~ 168 (443)
T PF04053_consen 164 KDSIY 168 (443)
T ss_dssp S-SEE
T ss_pred CCeEE
Confidence 77655
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.00033 Score=56.10 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=80.3
Q ss_pred eEEEEEccCCCEEEEEcCC----CcEEEEECCCCceEEEEeCCC--C--------cccCcEEEEEECCC----c-ceeee
Q 043942 17 FSSLAFSTDGQLLASGGFH----GLVQNRDTSSRNLQCTVEGPR--G--------GIEDSTVWMWNADR----G-AYLNM 77 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~--~--------~~~~~~v~i~d~~~----~-~~~~~ 77 (216)
...++++|+|+++++.+.+ .++..-+..+......+.... . -+.++.|.+.|.++ + ..+..
T Consensus 237 pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~y 316 (635)
T PRK02888 237 LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRY 316 (635)
T ss_pred cccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEE
Confidence 3567889999998887632 223333333322222221110 0 01457899999998 3 44444
Q ss_pred eeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccc-eEEEeeeecCeEEEEeCCCCcEEE
Q 043942 78 FSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNY-WMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 78 ~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
+. -......++++|||+++++++ .+.++.|.|+.+.+....-+. .++. ......-.......+|+++|+.+.
T Consensus 317 IP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~-----~~~~~vvaevevGlGPLHTaFDg~G~ayt 390 (635)
T PRK02888 317 VP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI-----KPRDAVVAEPELGLGPLHTAFDGRGNAYT 390 (635)
T ss_pred EE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC-----CccceEEEeeccCCCcceEEECCCCCEEE
Confidence 44 556688999999999887665 689999999997653110000 0000 000000233445667788877666
Q ss_pred EecccCeE
Q 043942 156 TGCVDGKV 163 (216)
Q Consensus 156 ~~~~~~~i 163 (216)
+-.-|..+
T Consensus 391 slf~dsqv 398 (635)
T PRK02888 391 TLFLDSQI 398 (635)
T ss_pred eEeeccee
Confidence 66666655
No 328
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=4.9e-05 Score=56.61 Aligned_cols=93 Identities=12% Similarity=0.043 Sum_probs=71.0
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
+++.+..+-+...-+..+...|.+++|+|..+ ++..++.+.+|++.|+++...+..+..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-------------------- 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-------------------- 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--------------------
Confidence 67777666666666777888999999999776 788899999999999997766555542
Q ss_pred EEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEccccc
Q 043942 143 TCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~ 200 (216)
+ ..+++++|+-|.. ++..|-..|.|.|||++..+
T Consensus 235 -----------------------~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 235 -----------------------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred -----------------------c-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 2 5667778877654 55566668888899887654
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.02 E-value=0.0021 Score=49.81 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=89.5
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCC---------Ccc----------cCcEEEEEECCCcceeeeeeccC--C-
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPR---------GGI----------EDSTVWMWNADRGAYLNMFSGHG--S- 83 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---------~~~----------~~~~v~i~d~~~~~~~~~~~~~~--~- 83 (216)
+..++.+..++.+..+|..+|+.+....... .+. .++.+..+|..+|+.+...+... +
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 3456677788999999999998887765421 111 56777778888877655432110 0
Q ss_pred ----CeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 84 ----GLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 84 ----~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
....+.-+| .+..+..++.++.+..+|..+|+.+-........ .... ..+.+. ..+.++..++.-
T Consensus 240 ~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~~---~~~~vy--~~~~~g~l~ald 310 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN----DFAV---DGGRIY--LVDQNDRVYALD 310 (394)
T ss_pred cchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc----CcEE---ECCEEE--EEcCCCeEEEEE
Confidence 011111222 3456667778999999999999876554321100 0000 000000 011222222222
Q ss_pred cccCeEEeee-----CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 158 CVDGKVDGHI-----DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 158 ~~~~~i~~~~-----~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
-.+|.+.-.. ....+... .+.+|+.++.||.+++.|..+++.+-+
T Consensus 311 ~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 311 TRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred CCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 2222220000 01111111 245677888899999999988876543
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.01 E-value=0.0023 Score=46.01 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=81.5
Q ss_pred EeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc-CCCee
Q 043942 9 EILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH-GSGLT 86 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~v~ 86 (216)
.+.+-...+..++|+|+.+ ++++....+.|...+.. |+.++.+.-. .+..-
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---------------------------G~vlr~i~l~g~~D~E 68 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD---------------------------GKVLRRIPLDGFGDYE 68 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------------------EEEEEE-SS-SSEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC---------------------------CCEEEEEeCCCCCCce
Confidence 4555556799999999765 55555655555555432 3333333322 24578
Q ss_pred EEEEcCCCcEEEEecCCCeEEEEeCCCCc-e--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 87 CGDFTTDGKTICTGSDNATLSIWNPKGGE-N--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 87 ~~~~~~~~~~l~t~~~d~~i~~wd~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.|++..++.++++--.++.+.++++.... . ......-..... ...+..+-.++|+|.++.|+++-+....
T Consensus 69 gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~N~G~EGla~D~~~~~L~v~kE~~P~ 141 (248)
T PF06977_consen 69 GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP-------NKGNKGFEGLAYDPKTNRLFVAKERKPK 141 (248)
T ss_dssp EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S----------SS--EEEEEETTTTEEEEEEESSSE
T ss_pred eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc-------cCCCcceEEEEEcCCCCEEEEEeCCCCh
Confidence 89998888888877779999999984321 1 111111000000 1145668899999977666655443221
Q ss_pred -------------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccccc
Q 043942 164 -------------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 164 -------------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~ 200 (216)
......+.+++++|.. ++++-+..+..|..+| .+++
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~ 203 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR 203 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC
Confidence 1123457889999864 5566666778888887 3344
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=6e-05 Score=59.94 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK 162 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 162 (216)
..|.--+++..+++++.|+..|.+++|+-..++....-.. +....+.....+++..++|.|+..|.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~--------------~~~~~~~~~~vs~~e~lvAagt~~g~ 99 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE--------------GATGITCVRSVSSVEYLVAAGTASGR 99 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc--------------CccceEEEEEecchhHhhhhhcCCce
Confidence 3344444566789999999999999999776654432221 02344556677888888888888888
Q ss_pred E--------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 163 V--------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 163 i--------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
| ..|...|++++|++|+..+.+|...|+|..-.+..
T Consensus 100 V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 100 VSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 8 45778999999999999999999999999888776
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.97 E-value=0.0017 Score=50.09 Aligned_cols=105 Identities=14% Similarity=0.093 Sum_probs=63.8
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE------EEeCC--CCcccCcEEEEEECCCc---------ceeeee
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC------TVEGP--RGGIEDSTVWMWNADRG---------AYLNMF 78 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~------~~~~~--~~~~~~~~v~i~d~~~~---------~~~~~~ 78 (216)
.|..+.|+++..-|+.+...|.|-+|.....+... ..+.. .....++.-.+-|+... .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998899999999999999876543332 11100 00113334445565431 233344
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR 121 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 121 (216)
....++|++++.+ |=.+++.|..+|.+.+.|++....+..-.
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~ 124 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNEN 124 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeecc
Confidence 5567899999987 55699999999999999999777766533
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0001 Score=55.80 Aligned_cols=168 Identities=13% Similarity=0.103 Sum_probs=103.4
Q ss_pred eccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-CceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEE
Q 043942 11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGD 89 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~ 89 (216)
+-|..+|.++.+++.+..+++....|.|.-|.... -+.. .+-.-|.+....-+..+.-......++.
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP------------r~~l~~~~K~eTdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP------------RTNLNFELKHETDLYGFPKAKTEPTSFE 208 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCc------------cccccccccccchhhcccccccCccceE
Confidence 35889999999999999999999899999998763 1100 0011233333333333333456678999
Q ss_pred EcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeee-C
Q 043942 90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHI-D 168 (216)
Q Consensus 90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~-~ 168 (216)
|+|++..+.+-+.|..|+++++++|+.++.+............ ..-.+..+.|.. .+++ +..+..|. .
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~k-----s~y~l~~VelgR---Rmav---erelek~~~~ 277 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPK-----SPYGLMHVELGR---RMAV---ERELEKHGST 277 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccc-----cccccceeehhh---hhhH---HhhHhhhcCc
Confidence 9999999999999999999999999998888753222111100 112223333321 1111 11112222 2
Q ss_pred CEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.-+.+.|+..|++|+-++.=| |++.++.++...
T Consensus 278 ~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ 310 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTILG-IKVINLDTNTVV 310 (558)
T ss_pred ccceeEEcCCCCEEEeeccee-EEEEEeecCeEE
Confidence 335677888888887766433 677777766544
No 334
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.93 E-value=0.0032 Score=44.88 Aligned_cols=97 Identities=19% Similarity=0.155 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCC----Ccc----------cCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPR----GGI----------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT 91 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----~~~----------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 91 (216)
..+++.|+..+.+..-|..+|+...+..... .++ ..+.+++.+.++|.....+.....--......
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 3578888889999999999987765432111 111 78889999999998887776543322344557
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 92 TDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+++..+..|+.|+..+..|.++...+...+.
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEeccc
Confidence 7899999999999999999998888777654
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.91 E-value=0.0024 Score=49.53 Aligned_cols=96 Identities=17% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----cc----------cCcEEEEEECCCcceeeeeeccCCCeeE-EEE
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----GI----------EDSTVWMWNADRGAYLNMFSGHGSGLTC-GDF 90 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----~~----------~~~~v~i~d~~~~~~~~~~~~~~~~v~~-~~~ 90 (216)
+..++.++.++.+..+|.++|+...+.+.... +. .++.++-+|.++|+.+............ ..-
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 45677788899999999999987766654322 11 6788999999999888766532111000 001
Q ss_pred cC--CCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942 91 TT--DGKTICTGSDNATLSIWNPKGGENFHAIR 121 (216)
Q Consensus 91 ~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 121 (216)
+| .+..++.++.++.+..+|..+|+.+-...
T Consensus 200 sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 200 APATAFGGAIVGGDNGRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred CCEEECCEEEEEcCCCEEEEEEccCChhhheec
Confidence 12 23456677889999999999998765543
No 336
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.90 E-value=0.00059 Score=48.84 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=70.8
Q ss_pred cccceEEEEEccCCCEEEEEcCCC-----------cEEEEECCCCceEEEEeC-CCCcc--cCcEEEEEECCCcceeeee
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHG-----------LVQNRDTSSRNLQCTVEG-PRGGI--EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~-----------~v~vwd~~~~~~~~~~~~-~~~~~--~~~~v~i~d~~~~~~~~~~ 78 (216)
+...|.++.++|..++|+.|+... -+..|.+-++.+....-. ....+ ...+-.+|.+-+.+.....
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 467899999999989888876321 356677666544333211 11111 1122334443322222111
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
......|..|..+|||..|++.+.+|.|.+|++-+-+.......
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 22456799999999999999999999999999998777666653
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=2.1e-05 Score=63.96 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=76.5
Q ss_pred CCeeEEEEcCCCcEEEEec----CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 83 SGLTCGDFTTDGKTICTGS----DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
+..+-.+|+|...++++++ ..|.|.+|- ++|++..... .+-.+++++|+|..-.|+.|=
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt----------------~P~hatSLCWHpe~~vLa~gw 78 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT----------------YPVHATSLCWHPEEFVLAQGW 78 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc----------------cceehhhhccChHHHHHhhcc
Confidence 3345578999999998876 457788774 4565444333 344567799999877777776
Q ss_pred ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 159 VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 159 ~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.-|.+ ..|..+|..+.|||+|..|+++..-|.|.+|...-..
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 66655 5778899999999999999999999999999887433
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.84 E-value=6.4e-06 Score=64.69 Aligned_cols=147 Identities=20% Similarity=0.282 Sum_probs=90.1
Q ss_pred ccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCc--ceee--eeec-cCCCe
Q 043942 12 GHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRG--AYLN--MFSG-HGSGL 85 (216)
Q Consensus 12 ~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~--~~~~--~~~~-~~~~v 85 (216)
+|....++++|++ |.+.||.|-.... .+..+.|||+.++ .+.. .+.+ .....
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhr----------------------nds~~~Iwdi~s~ltvPke~~~fs~~~l~gq 157 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHR----------------------NDSSLKIWDINSLLTVPKESPLFSSSTLDGQ 157 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhc----------------------ccCCccceecccccCCCccccccccccccCc
Confidence 4566788888888 5566776632111 3445555555543 1111 1111 23345
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV 163 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i 163 (216)
.+++|..+.+++.+|...+.+.++|++.. .....+ ....+..+..+| .+.++++-. ||.+
T Consensus 158 ns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-----------------nTk~vqG~tVdp~~~nY~cs~~-dg~i 219 (783)
T KOG1008|consen 158 NSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-----------------NTKYVQGITVDPFSPNYFCSNS-DGDI 219 (783)
T ss_pred cccccccCcchhhcccccchhhhhhhhhhhhhhhhh-----------------hhhhcccceecCCCCCceeccc-cCce
Confidence 68888888999999999999999999832 222222 223455666677 666666544 5555
Q ss_pred ---------------Eee-----eCCEEEEEEecCCC-eEEEEeC-CCcEEEEEccc
Q 043942 164 ---------------DGH-----IDAIQSLSVSAIRE-SLVSVSV-DGTARVFEIAE 198 (216)
Q Consensus 164 ---------------~~~-----~~~i~~~~~~~~~~-~l~s~~~-d~~v~vw~~~~ 198 (216)
..| ...+..++|+|... .+++... .++|+.+++..
T Consensus 220 AiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 220 AIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 111 12489999999643 4555555 58899999864
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.82 E-value=0.0042 Score=48.68 Aligned_cols=163 Identities=12% Similarity=0.175 Sum_probs=83.2
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-------Ccc----cCcEEEEEECCCcceeeeeeccCCC
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-------GGI----EDSTVWMWNADRGAYLNMFSGHGSG 84 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------~~~----~~~~v~i~d~~~~~~~~~~~~~~~~ 84 (216)
.-....|.+. ..+|+-...+.|.++.--+.+..+.++.+. +.. .++.|.+||.++++.+..+.-. +
T Consensus 70 ~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~ 146 (443)
T PF04053_consen 70 SGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVS--A 146 (443)
T ss_dssp E-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS---E
T ss_pred ceeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcCCcccceEEcCcEEEEECCCCEEEEEhhHcceeeEEecC--C
Confidence 3446778884 457777778889997433333222222221 111 5667999999999999988733 3
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCC-----------ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGG-----------ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
|..+.|++++.+++..+.+ .+.+++.... .....+.. ....|.+.+|..+ -+
T Consensus 147 vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---------------~~~~IkSg~W~~d-~f 209 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---------------ISERIKSGCWVED-CF 209 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---------------E-S--SEEEEETT-EE
T ss_pred CcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---------------ecceeEEEEEEcC-EE
Confidence 8999999999999988755 6777765532 01222211 2456777777655 33
Q ss_pred EEEe---------cccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 154 LVTG---------CVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 154 l~~~---------~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+++. +.-+.+..-..++.=+...|+.+.+.....|+.+..+.+..
T Consensus 210 iYtT~~~lkYl~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 210 IYTTSNHLKYLVNGETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEE-TTEEEEEETTEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEcCCeEEEEEcCCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 3332 22233333355666677777667777777788887776653
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.82 E-value=0.0053 Score=43.86 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=54.6
Q ss_pred CCcEEEEECCCCceEEEEeCCC---Ccc--------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942 35 HGLVQNRDTSSRNLQCTVEGPR---GGI--------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI 97 (216)
Q Consensus 35 d~~v~vwd~~~~~~~~~~~~~~---~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 97 (216)
+|.|..||..+++.+....... ... .++.++.||..+|+.+..... ...+.... ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 4556666666666555554311 000 788999999999998877764 23222211 2235566
Q ss_pred EEecCCCeEEEEeCCCCceeEEe
Q 043942 98 CTGSDNATLSIWNPKGGENFHAI 120 (216)
Q Consensus 98 ~t~~~d~~i~~wd~~~~~~~~~~ 120 (216)
+.++.++.+..+|..+|+.+...
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEE
T ss_pred ccccceeeeEecccCCcceeeee
Confidence 66668889999999999988774
No 341
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.81 E-value=0.0059 Score=44.07 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=77.5
Q ss_pred ccceEEEEEccCCCEEEEEcCC--------CcEEEEECCCCceEEEEeCC--CCcc--------------cCcEEEEEEC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFH--------GLVQNRDTSSRNLQCTVEGP--RGGI--------------EDSTVWMWNA 69 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d--------~~v~vwd~~~~~~~~~~~~~--~~~~--------------~~~~v~i~d~ 69 (216)
....+.+++.|+|++.++.... |.+..++.. ++.......- ..++ ..+.|..+++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEec
Confidence 4568899999999987776543 457777777 4433322211 1111 4555666666
Q ss_pred CCc-c------eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 70 DRG-A------YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 70 ~~~-~------~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
... . ....+....+..-.+++..+|++.++....+.|.++|.+ |+.+..+.. ....+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~---------------p~~~~ 227 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL---------------PVPRP 227 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----------------SSSSE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC---------------CCCCE
Confidence 421 1 111122222347789999999988887788999999988 888887775 33578
Q ss_pred EEEEe-CCCCcEEEE
Q 043942 143 TCLSW-PGTSKYLVT 156 (216)
Q Consensus 143 ~~~~~-~~~~~~l~~ 156 (216)
++++| .++.+.|+.
T Consensus 228 t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEEESTTSSEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 89999 466555544
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.79 E-value=0.0048 Score=46.46 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=68.7
Q ss_pred cEEEEEECCCc----ceeeee--eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEE
Q 043942 62 STVWMWNADRG----AYLNMF--SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 62 ~~v~i~d~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~ 134 (216)
|.+.++++.+. ..+..+ ....++|++++-- +++ ++.+. .+.|.+|++...+ ....-...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~----------- 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD----------- 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE------------
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-----------
Confidence 99999999873 222222 2356888888766 444 44433 4789999998777 33222110
Q ss_pred EeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 135 CTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
....+.++... ++++++|.....+ .....+++++.+-++++.++.+..+|.+.++...
T Consensus 128 ---~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 128 ---SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ---BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ---ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 11223333322 3344444433332 1224568888888777788899999999999886
Q ss_pred c
Q 043942 198 E 198 (216)
Q Consensus 198 ~ 198 (216)
.
T Consensus 203 ~ 203 (321)
T PF03178_consen 203 P 203 (321)
T ss_dssp S
T ss_pred C
Confidence 3
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.72 E-value=0.00082 Score=52.27 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=71.5
Q ss_pred EEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE
Q 043942 19 SLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI 97 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 97 (216)
..+|+|||++|+-+. .||. -.|+++|+.++.. ..+..-.+.-..=.|+|||+.+
T Consensus 242 ~P~fspDG~~l~f~~~rdg~------------------------~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~i 296 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGS------------------------PDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKI 296 (425)
T ss_pred CccCCCCCCEEEEEECCCCC------------------------ccEEEEcCCCCcc-eecccCCccccCccCCCCCCEE
Confidence 468999998776544 4443 3345556655542 2244333333467799999988
Q ss_pred EEec-CCCe--EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-Ce--EE-------
Q 043942 98 CTGS-DNAT--LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-GK--VD------- 164 (216)
Q Consensus 98 ~t~~-~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~--i~------- 164 (216)
+..+ ..|. |.+.|.+.+.. ..+.. ....-..-.|+|||++++..+.. |. +.
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~---------------~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQV-TRLTF---------------SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred EEEeCCCCCcceEEECCCCCce-eEeec---------------cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 7665 4444 66666664443 33332 11222267889999988876642 32 21
Q ss_pred ------eeeCCEEEEEEecCCCeEEEEeC
Q 043942 165 ------GHIDAIQSLSVSAIRESLVSVSV 187 (216)
Q Consensus 165 ------~~~~~i~~~~~~~~~~~l~s~~~ 187 (216)
........-.|.|+++.++..+.
T Consensus 361 ~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 361 GKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CcEEEccccccCCCCCcCCCCceEEEecc
Confidence 11222334456777777665443
No 344
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=7.9e-05 Score=61.16 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=89.5
Q ss_pred eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
...+++.|+...+|++|+.+.++|+.|+..|.|+++++.+|........ |...++.+.=+.+|..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc---------------H~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC---------------HQSAVTLVEPSVDGST 1157 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc---------------cccccccccccCCcce
Confidence 4556777888999999999999999999999999999999998887777 9999999998999998
Q ss_pred EEEecccCe-E-----------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 154 LVTGCVDGK-V-----------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 154 l~~~~~~~~-i-----------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
+++.+.-.. + ..|. ..-.++.|+...+.-+.|.......+||+.++.+..+
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred eeeeccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 877655443 2 2221 2335667776655545555556789999998776544
No 345
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00033 Score=58.61 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=53.8
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
-.++|++++|+.+|+.++.|-.+|.|.+||+..++..+.+..... ....+..+.+..++..+.++...
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a------------p~t~vi~v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA------------PVTGVIFVGRTSQNSKLLTSDTG 196 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC------------ccceEEEEEEeCCCcEEEEccCC
Confidence 457899999999999999999999999999999999888876110 22334445556666677777666
Q ss_pred CeE
Q 043942 161 GKV 163 (216)
Q Consensus 161 ~~i 163 (216)
|.+
T Consensus 197 Gsf 199 (1206)
T KOG2079|consen 197 GSF 199 (1206)
T ss_pred Cce
Confidence 644
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.0038 Score=38.58 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=45.9
Q ss_pred eEEEEEcc---CC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 17 FSSLAFST---DG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 17 v~~~~~s~---~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
|++|++.. || +.|+.|+.|..||+|+-. ..+..+. ....|+++.-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----------------------------e~~~Ei~-e~~~v~~L~~~~ 52 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----------------------------EIVAEIT-ETDKVTSLCSLG 52 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----------------------------cEEEEEe-cccceEEEEEcC
Confidence 56777665 33 579999988888888732 2334444 345677777665
Q ss_pred CCcEEEEecCCCeEEEEeCC
Q 043942 93 DGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~ 112 (216)
. ..++.+-.+|+|-+|+-.
T Consensus 53 ~-~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 53 G-GRFAYALANGTVGVYDRS 71 (111)
T ss_pred C-CEEEEEecCCEEEEEeCc
Confidence 4 568888899999999753
No 347
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.68 E-value=0.011 Score=43.47 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942 178 IRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 178 ~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
...||+..+. +.|-||++.+++..+.++....+..
T Consensus 237 ~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~~~l 271 (275)
T PF00780_consen 237 SSPYLIAFSS-NSIEVRSLETGELVQTIPLPNIRLL 271 (275)
T ss_pred ECCEEEEECC-CEEEEEECcCCcEEEEEECCCEEEE
Confidence 3457777665 5599999999999988887777654
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.68 E-value=0.00022 Score=36.87 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=27.7
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEEC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDT 43 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 43 (216)
...|.+++|+|...+||.+..+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999988
No 349
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.67 E-value=0.0025 Score=51.82 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=79.7
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK 95 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 95 (216)
.+...+++|+|+.++..-... | .... ....+.+++.. +.......+ ...+.-.|+|+|+
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~-----~-~~~d------------~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~ 409 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLG-----R-GAPD------------PASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDAD 409 (591)
T ss_pred CcccceECCCCCEEEEEEeec-----C-CCCC------------cceEEEEEeCC-CcceeeecC--CCCCCceECCCCC
Confidence 566778888888776554200 0 0000 12344455542 222222222 2378889999998
Q ss_pred EEEEecCC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------
Q 043942 96 TICTGSDN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------- 163 (216)
Q Consensus 96 ~l~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------- 163 (216)
.+++.... ..+++.+-.....+............ .....|..+.|+|||..++... ++.+
T Consensus 410 ~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 410 AVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDG 481 (591)
T ss_pred ceEEEecCcceEEEeccCCCceEEEEeccCchhhh-------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCC
Confidence 88877543 22333332222222222211100000 1346799999999999877654 3454
Q ss_pred -----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 164 -----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 164 -----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
..-...+.++.|..++.++ .+..++.-.+|.+.
T Consensus 482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 482 QYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 1112235788999998855 44445555566654
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.67 E-value=0.0095 Score=42.56 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=36.1
Q ss_pred CCCceeEEeeccccceE-EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942 2 NQGDWASEILGHKDSFS-SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 54 (216)
++|+....+..-. .|. .....+++.++..++.|++.+..|..+...+.+.+.
T Consensus 81 ~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 81 KTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred cchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 4565555554332 233 244567889999999999999999998877766544
No 351
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.65 E-value=0.011 Score=42.66 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=74.4
Q ss_pred ceEEEEEccCCCEEEEEcCCC--cEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeee
Q 043942 16 SFSSLAFSTDGQLLASGGFHG--LVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~ 77 (216)
....+.|..+|.++-+.+.-| .|+.+|+.+++.......+..-- .++...+||..+.+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEE
Confidence 355788877888888888766 79999999999888777665422 889999999999888888
Q ss_pred eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 78 FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+.- .+.=..++ .+++.|+.......++++|..+.+....+..
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence 763 34456666 4677777777788999999988877666654
No 352
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0015 Score=50.90 Aligned_cols=118 Identities=17% Similarity=0.253 Sum_probs=82.6
Q ss_pred EEEEcCCCcEEEEECCCCceEEEEeCCCCc-c---------------------cCcEEEEEECCC-cc-eeeeeeccC--
Q 043942 29 LASGGFHGLVQNRDTSSRNLQCTVEGPRGG-I---------------------EDSTVWMWNADR-GA-YLNMFSGHG-- 82 (216)
Q Consensus 29 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~---------------------~~~~v~i~d~~~-~~-~~~~~~~~~-- 82 (216)
|.++.....++--|++.|+.+.++..+... . .++.|+-||++- +. .+...++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 445556677888899999988888766551 1 888999999883 22 333334443
Q ss_pred --CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 83 --SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 83 --~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
....|.+-..+| ++++|+.+|.|++||- .+.. ...++. ...+|..+..+.+|.++++.+.
T Consensus 429 ~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPg---------------LG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 429 TKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPG---------------LGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred cccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccc---------------cCCceeeEEeeccCcEEEEecc
Confidence 345566655444 8999999999999997 4443 344554 7889999999999998876655
Q ss_pred cCeE
Q 043942 160 DGKV 163 (216)
Q Consensus 160 ~~~i 163 (216)
.-.+
T Consensus 492 tyLl 495 (644)
T KOG2395|consen 492 TYLL 495 (644)
T ss_pred cEEE
Confidence 4433
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00052 Score=54.25 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=54.4
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE-EEEeCCCCcEEEEeccc
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT-CLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~ 160 (216)
...+.-+.|+|.-..+|++..+|.+.+..+. .+.+..++. +...++ +++|.|||+.+++|-.|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~---------------p~~~v~~sL~W~~DGkllaVg~kd 83 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI---------------PGENVTASLCWRPDGKLLAVGFKD 83 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC---------------CCCccceeeeecCCCCEEEEEecC
Confidence 3457889999999999999999999999888 777777764 444454 88888888888888888
Q ss_pred CeEEee
Q 043942 161 GKVDGH 166 (216)
Q Consensus 161 ~~i~~~ 166 (216)
|.+.-|
T Consensus 84 G~I~L~ 89 (665)
T KOG4640|consen 84 GTIRLH 89 (665)
T ss_pred CeEEEE
Confidence 877444
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.013 Score=45.73 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=36.5
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
.|.+|+.. |+.+.++.-..+.+.++.|..+.. |+.-..||.++++|+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCC
Confidence 58888876 556666554448899999998655 4455689999999986
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.55 E-value=0.015 Score=48.52 Aligned_cols=124 Identities=15% Similarity=0.276 Sum_probs=85.2
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-------CcEEEEecCCCeEEEEeCCCCce-eEEeecccccccccc
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-------GKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEFSLNY 131 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~ 131 (216)
....|+-.|+++|+.+..+..+... .-..+.|+ ....+.|-.++.+..||.+-... +..-.. ...
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~--k~Y---- 574 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS--KQY---- 574 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc--ccc----
Confidence 5678899999999999999877653 23344443 33456677788999999995331 111000 000
Q ss_pred eEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.......|++-+.+| +||+|+.+|.| .+...+|.++..+.||+++++.+ +..+.+++..
T Consensus 575 -----~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 575 -----SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred -----ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 033455667666655 68899999988 45578999999999999987654 6778888864
No 356
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.53 E-value=0.00048 Score=35.62 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=29.8
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN 116 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 116 (216)
...|.+++|+|...++|.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 357
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.45 E-value=0.025 Score=41.97 Aligned_cols=144 Identities=10% Similarity=0.139 Sum_probs=70.6
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
-.+.+..+.-++||+++++++.-....-||. ....-...-+.-...|..+.|.|
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~--------------------------G~~~w~~~~r~~~~riq~~gf~~ 196 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDP--------------------------GQTTWQPHNRNSSRRIQSMGFSP 196 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-T--------------------------T-SS-EEEE--SSS-EEEEEE-T
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecC--------------------------CCccceEEccCccceehhceecC
Confidence 3456777777888887777764333334442 21111111222356799999999
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------- 163 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------- 163 (216)
++.+.+.+ ..+.|++=+.. .....+....... . ...-.+..++|.++....++|+....+
T Consensus 197 ~~~lw~~~-~Gg~~~~s~~~--~~~~~w~~~~~~~-~-------~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW 265 (302)
T PF14870_consen 197 DGNLWMLA-RGGQIQFSDDP--DDGETWSEPIIPI-K-------TNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTW 265 (302)
T ss_dssp TS-EEEEE-TTTEEEEEE-T--TEEEEE---B-TT-S-------S--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-
T ss_pred CCCEEEEe-CCcEEEEccCC--CCccccccccCCc-c-------cCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccc
Confidence 98877765 88888887722 1112221100000 0 033457899999887777766655444
Q ss_pred ------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 164 ------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 164 ------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
..-...++.+.|.++.+-++. +.+|.+.-|
T Consensus 266 ~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 266 QKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred eECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 122346889999776555554 468877655
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.45 E-value=0.0009 Score=51.04 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=67.2
Q ss_pred ccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC
Q 043942 23 STDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD 102 (216)
Q Consensus 23 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~ 102 (216)
|||+++++.... .-+.|... ..+...+||+++++....... ...+....|+|+|+.++...
T Consensus 1 S~d~~~~l~~~~--~~~~~r~s---------------~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~- 61 (353)
T PF00930_consen 1 SPDGKFVLFATN--YTKQWRHS---------------FKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR- 61 (353)
T ss_dssp -TTSSEEEEEEE--EEEESSSE---------------EEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-
T ss_pred CCCCCeEEEEEC--cEEeeeec---------------cceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-
Confidence 578887776553 22233221 456788899988765544333 56788999999999998875
Q ss_pred CCeEEEEeCCCCceeEEeecccccccccceEE--Eeee-ecCeEEEEeCCCCcEEEEeccc
Q 043942 103 NATLSIWNPKGGENFHAIRRSSLEFSLNYWMI--CTSL-YDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 103 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
++.|.+++..++...+..... ......+..- .... -+.-..+-|+||+++|+....|
T Consensus 62 ~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 62 DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 678999998877444322221 1000000000 0000 1234568899999998865443
No 359
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.43 E-value=0.016 Score=48.17 Aligned_cols=95 Identities=11% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
...|..+.++|+|++++..+..+ |.|-.+-. ......+.. ....+.|-.+.-+..++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~---------------g~~~i~Crt~~v~~~~~~----- 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFED---------------GKKEINCRTVPVDERFFT----- 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccC---------------CCcceeEEEEEechhhcc-----
Confidence 35788999999999999888755 55544432 111112221 223344444333333332
Q ss_pred CeEEeeeCCEEEEEEecC---CCeEEEEeCCCcEEEEEccccc
Q 043942 161 GKVDGHIDAIQSLSVSAI---RESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 161 ~~i~~~~~~i~~~~~~~~---~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
......|..+.|+|. +..|+.-..|+++|+||+...+
T Consensus 143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 124567889999986 4788888889999999997644
No 360
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.042 Score=45.64 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=94.6
Q ss_pred eEEeeccccc-eEEEEEccCCCEEEEEcCCC-----cEEEEECCCC------ceEE--EEe---CCCCc--c--------
Q 043942 7 ASEILGHKDS-FSSLAFSTDGQLLASGGFHG-----LVQNRDTSSR------NLQC--TVE---GPRGG--I-------- 59 (216)
Q Consensus 7 ~~~~~~h~~~-v~~~~~s~~~~~l~s~~~d~-----~v~vwd~~~~------~~~~--~~~---~~~~~--~-------- 59 (216)
++.++++... |..+....+.++|++.+.|+ .+++|+++.. .++. .+. .+..+ .
T Consensus 57 ~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~ 136 (933)
T KOG2114|consen 57 IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED 136 (933)
T ss_pred eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence 3566677666 55554444557888877664 4899998643 2231 111 22111 1
Q ss_pred --------cCcEEEEEECC----CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeeccccc
Q 043942 60 --------EDSTVWMWNAD----RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLE 126 (216)
Q Consensus 60 --------~~~~v~i~d~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~ 126 (216)
.+|.|..+.-. .+....-...-..+|+.+++..++..++.......|.+|.+....+ ...+..
T Consensus 137 l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~---- 212 (933)
T KOG2114|consen 137 LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDN---- 212 (933)
T ss_pred ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeecc----
Confidence 78888877643 1221111222346899999999888744444556799999884332 333443
Q ss_pred ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942 127 FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-DGHIDAIQSLSVSAIRESLVSVSVDGTA 191 (216)
Q Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-~~~~~~i~~~~~~~~~~~l~s~~~d~~v 191 (216)
+..+++|..+++....+++++.+..- ....+.=.+.+|.-.++..+....-|.+
T Consensus 213 -----------~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~ 267 (933)
T KOG2114|consen 213 -----------NGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLL 267 (933)
T ss_pred -----------CCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEE
Confidence 77788888888766645555554433 2222222344554344444433333333
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.045 Score=40.89 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=92.9
Q ss_pred EEEEccCCCEEE-EEcCCCcEEEEECCCCceEE-EEeCCCCcc-----------cCcEEEEEECCCcceeeeee----c-
Q 043942 19 SLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQC-TVEGPRGGI-----------EDSTVWMWNADRGAYLNMFS----G- 80 (216)
Q Consensus 19 ~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~-~~~~~~~~~-----------~~~~v~i~d~~~~~~~~~~~----~- 80 (216)
+..|.++...|+ +--..+.|.-|+..+++... ......... .+..+.+++.+++..+..+. +
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCC
Confidence 345777666444 44456778888887653322 211111111 45556667765554422221 1
Q ss_pred cCCCeeEEEEcCCCcEEEEecC-----------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 81 HGSGLTCGDFTTDGKTICTGSD-----------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
.....+.+...|+|.+.++... -|.++.+|. .+.....+.. +-...+.++|||
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~---------------~~~~~NGla~Sp 172 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD---------------DLTIPNGLAFSP 172 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC---------------cEEecCceEECC
Confidence 1245678888999987776544 122333333 3444333332 345567899999
Q ss_pred CCcEEEEeccc-CeE---------------------EeeeCCEEEEEEecCCCeEEEEeCCC-cEEEEEcccccceee
Q 043942 150 TSKYLVTGCVD-GKV---------------------DGHIDAIQSLSVSAIRESLVSVSVDG-TARVFEIAEFRRATK 204 (216)
Q Consensus 150 ~~~~l~~~~~~-~~i---------------------~~~~~~i~~~~~~~~~~~l~s~~~d~-~v~vw~~~~~~~~~~ 204 (216)
|++.++.+... +.+ ....+..-.++...+|.+-+++-.+| .|.+|+.. ++++..
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence 99877766553 333 11123344555566677665444444 89999887 665543
No 362
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.25 E-value=0.058 Score=41.76 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=79.4
Q ss_pred CCCEEEEEc-CCCcEEEEECCC----CceEEEEeC------------------CCCcc-----------cCcEEEEEECC
Q 043942 25 DGQLLASGG-FHGLVQNRDTSS----RNLQCTVEG------------------PRGGI-----------EDSTVWMWNAD 70 (216)
Q Consensus 25 ~~~~l~s~~-~d~~v~vwd~~~----~~~~~~~~~------------------~~~~~-----------~~~~v~i~d~~ 70 (216)
+.++|+..+ ..+.|+|.|..+ .+..+.++. +.+.+ ..|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666655 678999999874 344444432 00101 45567777877
Q ss_pred CcceeeeeeccC---CCeeEEEEcCCCcEEEEecC--------------------CCeEEEEeCCCCceeEEeecccccc
Q 043942 71 RGAYLNMFSGHG---SGLTCGDFTTDGKTICTGSD--------------------NATLSIWNPKGGENFHAIRRSSLEF 127 (216)
Q Consensus 71 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~t~~~--------------------d~~i~~wd~~~~~~~~~~~~~~~~~ 127 (216)
+.+......... ..-..+-|.|..+.++|... -+++.+||+.+.+.++++....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~--- 242 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE--- 242 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T---
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC---
Confidence 776666665432 23457778888888887642 3679999999999999987632
Q ss_pred cccceEEEeeeecCeEEEEe--CCCCcEEEEec-ccCeE---------------------E---------------eeeC
Q 043942 128 SLNYWMICTSLYDGVTCLSW--PGTSKYLVTGC-VDGKV---------------------D---------------GHID 168 (216)
Q Consensus 128 ~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-~~~~i---------------------~---------------~~~~ 168 (216)
.......+.| .|+..+=++++ ....| . .-..
T Consensus 243 ----------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~ 312 (461)
T PF05694_consen 243 ----------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP 312 (461)
T ss_dssp ----------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred ----------CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence 1112333444 34443322221 12222 1 1124
Q ss_pred CEEEEEEecCCCeEEEEeC-CCcEEEEEccccc
Q 043942 169 AIQSLSVSAIRESLVSVSV-DGTARVFEIAEFR 200 (216)
Q Consensus 169 ~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~~ 200 (216)
-|+.+..|.|.++|..+.. +|.++.||+....
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 4799999999999987665 8999999998744
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.026 Score=42.11 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=73.2
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCC-CcEEEEECCC--CceEEEEeCCCCcccCcEEEEEECCCcceeeeeec
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFH-GLVQNRDTSS--RNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-~~v~vwd~~~--~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~ 80 (216)
|..++.+..|-..-+.++||||++.|..+... +.|..|++.. +.. ........+..
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~---------------------~~~~~~~~~~~ 210 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPI---------------------GGRRGFVDFDE 210 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCcc---------------------CCcceEEEccC
Confidence 44555555656667889999999877776643 5666665542 110 00111122223
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCC-eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe-CCCCcEEEEe
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNA-TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW-PGTSKYLVTG 157 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~ 157 (216)
..+..-.++...+|.+.+++...| .|..|+.+ ++.+..+.. ....+++++| .|+.+.|+..
T Consensus 211 ~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---------------P~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 211 EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---------------PVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred CCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---------------CCCCCccceEeCCCcCEEEEE
Confidence 445666788888898886555554 89999999 988888875 4356677777 4555554443
No 364
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.21 E-value=0.016 Score=40.78 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=66.5
Q ss_pred EEEEEccCCCEEE-EEcCCCcEEEEE--CCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942 18 SSLAFSTDGQLLA-SGGFHGLVQNRD--TSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 18 ~~~~~s~~~~~l~-s~~~d~~v~vwd--~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 94 (216)
+.++|+.+.+.+. +-+.+-.|.-|| ..+|.. .+.=.++|++..++...+.. -.++...+|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~------------snr~~i~dlrk~~~~e~~~P-----DGm~ID~eG 223 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL------------SNRKVIFDLRKSQPFESLEP-----DGMTIDTEG 223 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccc------------cCcceeEEeccCCCcCCCCC-----CcceEccCC
Confidence 4567776655443 445566676666 555543 12223567765544333321 234446688
Q ss_pred cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
++.+++-..++|...|..+|+.+.++.. ....+++++|--
T Consensus 224 ~L~Va~~ng~~V~~~dp~tGK~L~eikl---------------Pt~qitsccFgG 263 (310)
T KOG4499|consen 224 NLYVATFNGGTVQKVDPTTGKILLEIKL---------------PTPQITSCCFGG 263 (310)
T ss_pred cEEEEEecCcEEEEECCCCCcEEEEEEc---------------CCCceEEEEecC
Confidence 8888888899999999999999999987 678899999953
No 365
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.21 E-value=0.021 Score=46.54 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=66.3
Q ss_pred CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe--CCCCcEEEEecccC
Q 043942 84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW--PGTSKYLVTGCVDG 161 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~~ 161 (216)
...-+.-+.-++..++-+....+.+||.+.+....+... ...+.|.++.| .|+++.+++.+..+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f--------------~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF--------------SEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee--------------cCCCceeeceeeecCCCCEEEEEEcCc
Confidence 344455555566555666667899999998774333221 14788999999 47888877777776
Q ss_pred eE-------------------------Eeee-CCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 162 KV-------------------------DGHI-DAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 162 ~i-------------------------~~~~-~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
.+ ..+. .+|.+..|.++|.+++.+| +.+.|++-
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 66 2233 6889999999998877654 56777763
No 366
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.18 E-value=0.0093 Score=51.00 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=52.8
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK 162 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~ 162 (216)
..|.++.|..+.+.++.+...|.|.+-|..+......-. -...|.+++|+||+..++..+..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~----------------vd~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN----------------VDNGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee----------------ccCceEEEeecCCCcEEEEEeCCcE
Confidence 579999999999999999999999999877654332222 5678999999999999988888776
Q ss_pred E
Q 043942 163 V 163 (216)
Q Consensus 163 i 163 (216)
+
T Consensus 133 l 133 (1265)
T KOG1920|consen 133 L 133 (1265)
T ss_pred E
Confidence 6
No 367
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.073 Score=41.20 Aligned_cols=175 Identities=16% Similarity=0.152 Sum_probs=112.2
Q ss_pred EEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEEECCCcceeeee
Q 043942 18 SSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 18 ~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~d~~~~~~~~~~ 78 (216)
..++.++.+. .+++...+..|.+.|..+.+..........+. .++++.+.|..+.+.+...
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 4677888776 45555556899999988777766665433222 2577777777777777664
Q ss_pred eccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
.--..+ ..++++|+|..+..+. .++.+.+.|........ -..... .........+.++|+|.++.+.
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~----------~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL----------VGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc----------cccCCCCceEEECCCCCEEEEE
Confidence 422233 8999999999666554 78999999977554442 110000 0023445678889999866655
Q ss_pred cccC---eE----------EeeeC-----CEEEEEEecCCCeEEEEeC-CCcEEEEEcccccceee
Q 043942 158 CVDG---KV----------DGHID-----AIQSLSVSAIRESLVSVSV-DGTARVFEIAEFRRATK 204 (216)
Q Consensus 158 ~~~~---~i----------~~~~~-----~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~~~~~~ 204 (216)
.... .+ ..... ....+..+|+|+++..... .+.+.+-|..+......
T Consensus 225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 4433 44 22211 2345789999998887744 58888888877665543
No 368
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.063 Score=39.22 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=89.0
Q ss_pred eccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c-------------cCcEEEEEECCCcc
Q 043942 11 LGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I-------------EDSTVWMWNADRGA 73 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~-------------~~~~v~i~d~~~~~ 73 (216)
.+-...|.++.|+|+.+.|++......-.|+=..+|+.+.++...... + .++.++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344456999999999999998888888888888889998887643221 1 55566666554331
Q ss_pred eee-----e--ee--cc-CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 74 YLN-----M--FS--GH-GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 74 ~~~-----~--~~--~~-~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
.+. . +. .+ +.....++|.|....|..+=..+-+.+|.+..................+. -.-..+.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~-----~f~~DvS 236 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD-----LFVLDVS 236 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccc-----eEeeccc
Confidence 111 1 11 12 45678999999888888887777788877663321111111000000000 0234567
Q ss_pred EEEeCCC-CcEEEEecccCeE
Q 043942 144 CLSWPGT-SKYLVTGCVDGKV 163 (216)
Q Consensus 144 ~~~~~~~-~~~l~~~~~~~~i 163 (216)
.+.|++. +..++.+.+++.+
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l 257 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRL 257 (316)
T ss_pred cceecCCCCcEEEEecCCceE
Confidence 7788764 4455555555555
No 369
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.06 E-value=0.064 Score=38.72 Aligned_cols=107 Identities=11% Similarity=0.204 Sum_probs=66.6
Q ss_pred eeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 77 MFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
.+.+-...+..++|+|+.+ ++++....+.|.-++.. |+.+..++.. .....-.+++..++.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--------------g~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--------------GFGDYEGITYLGNGRYVL 80 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--------------S-SSEEEEEE-STTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--------------CCCCceeEEEECCCEEEE
Confidence 3445555699999999754 66777788999888875 7877777642 234566777777776666
Q ss_pred EecccCeE-------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 156 TGCVDGKV-------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 156 ~~~~~~~i-------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+.-.++.+ ..+...+-.++|+|.++.|+.+-+..-..+|.+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 65555554 12345689999999877777776666666776654
No 370
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.04 E-value=0.00041 Score=55.03 Aligned_cols=105 Identities=20% Similarity=0.331 Sum_probs=72.6
Q ss_pred eeccCCCeeEEEEcC-CCcEEEEec----CCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 78 FSGHGSGLTCGDFTT-DGKTICTGS----DNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 78 ~~~~~~~v~~~~~~~-~~~~l~t~~----~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
..++....++++|++ |.+.||.|- .|..+.+||+.++-. ...... . .+......+++|-.+
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~f-----s-------~~~l~gqns~cwlrd 165 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLF-----S-------SSTLDGQNSVCWLRD 165 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccc-----c-------cccccCccccccccC
Confidence 456778899999998 556676663 456699999987632 111110 0 013345568899888
Q ss_pred CcEEEEecccCeE-------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEE
Q 043942 151 SKYLVTGCVDGKV-------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFE 195 (216)
Q Consensus 151 ~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~ 195 (216)
.+.+.+|.....+ ......+..+..+| .+.|+++.. ||.|-+||
T Consensus 166 ~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 166 TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence 8888888777655 22234677788888 778888776 99999999
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.02 E-value=0.033 Score=43.56 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=57.6
Q ss_pred eEEEEEccCCCEEEEE-cCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeee-eeccCCCeeEEEEcCCC
Q 043942 17 FSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNM-FSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~ 94 (216)
+....+||+|+++|.+ +..|. ....++++|+++++.+.. +... ....+.|.+++
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~----------------------e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~ 181 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGS----------------------EWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDG 181 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTS----------------------SEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTS
T ss_pred eeeeeECCCCCEEEEEecCCCC----------------------ceEEEEEEECCCCcCcCCccccc--ccceEEEeCCC
Confidence 3457889999888755 33332 345577777777755432 2211 12349999998
Q ss_pred cEEEEecC-----------CCeEEEEeCCCCcee--EEeecccccccccceEEEeeeecC-eEEEEeCCCCcEEEE
Q 043942 95 KTICTGSD-----------NATLSIWNPKGGENF--HAIRRSSLEFSLNYWMICTSLYDG-VTCLSWPGTSKYLVT 156 (216)
Q Consensus 95 ~~l~t~~~-----------d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~ 156 (216)
+.++.... ...|+.|.+.+.... ..+... .... ...+..++++++++.
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~--------------~~~~~~~~~~~s~d~~~l~i 243 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP--------------DEPFWFVSVSRSKDGRYLFI 243 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T--------------TCTTSEEEEEE-TTSSEEEE
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec--------------CCCcEEEEEEecCcccEEEE
Confidence 87665442 334788888776443 333321 1122 456667777777654
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.00 E-value=0.015 Score=47.38 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=58.8
Q ss_pred CCeeEEEEcCCCcEEEEec------CC--CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 83 SGLTCGDFTTDGKTICTGS------DN--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~------~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
..+...+++|+|+.++... .| ..+.+++.. +.. ..+. .......-.|+|+|..+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt----------------~g~~~t~PsWspDG~~l 411 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVL----------------EGHSLTRPSWSLDADAV 411 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeee----------------cCCCCCCceECCCCCce
Confidence 4678899999999887654 23 346665643 222 2222 12236778889988876
Q ss_pred EEeccc------------CeE-----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 155 VTGCVD------------GKV-----------DGHIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 155 ~~~~~~------------~~i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
++.... +.+ ......|..+.|||||..++... ++.|++
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 665432 122 11245799999999999887655 577776
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.94 E-value=0.038 Score=34.22 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=57.2
Q ss_pred eeEEEEcC---CC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 85 LTCGDFTT---DG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 85 v~~~~~~~---~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
|+++++.. +| +.|++|+.|..|++|+-. ..+.++. ..+.+..++-... ..++.+-.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~----------------e~~~v~~L~~~~~-~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT----------------ETDKVTSLCSLGG-GRFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe----------------cccceEEEEEcCC-CEEEEEecC
Confidence 55666544 33 589999999999999743 6666666 4567788776665 558888889
Q ss_pred CeE-----------EeeeCCEEEEEEec-CC---CeEEEEeCCCcE
Q 043942 161 GKV-----------DGHIDAIQSLSVSA-IR---ESLVSVSVDGTA 191 (216)
Q Consensus 161 ~~i-----------~~~~~~i~~~~~~~-~~---~~l~s~~~d~~v 191 (216)
|++ ......++++++.. ++ .-|++|=.+|.|
T Consensus 63 GTVGvY~~~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 63 GTVGVYDRSQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred CEEEEEeCcceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 988 12223355555433 32 246666666665
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.94 E-value=0.087 Score=38.30 Aligned_cols=133 Identities=16% Similarity=0.150 Sum_probs=79.6
Q ss_pred ceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942 16 SFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 94 (216)
.+.+.+++++++.+|... .++ ...++++..... ..... ....+..-.|++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~------------------------~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDG------------------------GRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCC------------------------CCEEEEEcCCCc--ceeec-cCCccccccccCCC
Confidence 688999999998877655 111 122233322211 11111 22367788999998
Q ss_pred cEEEEecCCCeEEEEe-CCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec---ccCeE------
Q 043942 95 KTICTGSDNATLSIWN-PKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC---VDGKV------ 163 (216)
Q Consensus 95 ~~l~t~~~d~~i~~wd-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~i------ 163 (216)
...+....+...+++. ..++... ....... ....|..+.++|||..++... .++.+
T Consensus 78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~-------------~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPG-------------LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred CEEEEEcCCCceEEEEecCCCcceeEEecccc-------------cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 7777766666666664 3333322 2222100 112899999999999877654 23444
Q ss_pred -----------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942 164 -----------------DGHIDAIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 164 -----------------~~~~~~i~~~~~~~~~~~l~s~~~d 188 (216)
......++++.|.+++.+++.+...
T Consensus 145 r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 145 RDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred eCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 1223578999999999987766553
No 375
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.061 Score=42.46 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=63.2
Q ss_pred CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.|..+..++.|..++-++.+|.+-++=.+..-....+.. ....|+|=.++-+.+ +++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD---------------gk~~v~CRt~~i~~~-~ftss----- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED---------------GKSTVNCRTTPVAER-FFTSS----- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecC---------------CCceEEEEeecccce-eeccC-----
Confidence 567788899999999999998766654333222333332 233355555544444 33332
Q ss_pred EeeeCCEEEEEEecCC---CeEEEEeCCCcEEEEEcccccceee
Q 043942 164 DGHIDAIQSLSVSAIR---ESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 164 ~~~~~~i~~~~~~~~~---~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
..-.+..++|+|+. ..|..-+.|+.+|+||+.....+..
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 22356788999976 5677777899999999987665543
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.11 Score=44.56 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=37.2
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG 57 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~ 57 (216)
.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 46899999999999999999999999999888877776665444
No 377
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.77 E-value=0.17 Score=39.28 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=66.6
Q ss_pred eEEEEEccCCCEEEEEc--------------------CCCcEEEEECCCCceEEEEeCCCCcc-----------------
Q 043942 17 FSSLAFSTDGQLLASGG--------------------FHGLVQNRDTSSRNLQCTVEGPRGGI----------------- 59 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~--------------------~d~~v~vwd~~~~~~~~~~~~~~~~~----------------- 59 (216)
-+..-|.|..+.++|.. ....+.+||+.+.+.++++.......
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 45677888888888875 24579999999999999998765432
Q ss_pred ----cCcEEEEEEC-CCcc----eeeeeec-----------------cCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC
Q 043942 60 ----EDSTVWMWNA-DRGA----YLNMFSG-----------------HGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK 112 (216)
Q Consensus 60 ----~~~~v~i~d~-~~~~----~~~~~~~-----------------~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~ 112 (216)
-.++|..|-- ..++ .+..+.. -..-|+.|..|.|.++|..++ .+|.++.||+.
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 2333333322 2221 1222211 134579999999999987655 78999999998
Q ss_pred CCceeE---Eeeccc-ccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 113 GGENFH---AIRRSS-LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 113 ~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
+..... ++.... +.........-....+...-+..|.||+.++..
T Consensus 343 DP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 343 DPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp STTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 754332 222111 100000000000023345667788888877654
No 378
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.69 E-value=0.1 Score=41.88 Aligned_cols=105 Identities=10% Similarity=0.028 Sum_probs=61.8
Q ss_pred CCeeEEEEcCC----CcEEEEecCCCeEEEEeCCC-----CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 83 SGLTCGDFTTD----GKTICTGSDNATLSIWNPKG-----GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 83 ~~v~~~~~~~~----~~~l~t~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
..|..+.|.|- ...++..-..+.|.||.+.. ++.+.....+-.+ ...--...+.|+|....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e----------~~pvLpQGCVWHPk~~i 126 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE----------PFPVLPQGCVWHPKKAI 126 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC----------CcccCCCcccccCCCce
Confidence 45899999984 33455556778899998862 2222221110000 01111245678887777
Q ss_pred EEEecc-cCeE--------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcc
Q 043942 154 LVTGCV-DGKV--------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIA 197 (216)
Q Consensus 154 l~~~~~-~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~ 197 (216)
|++-.. |-.+ ....+.|.+.+|.+||+.|+.+- ..=.-++||-.
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 665333 3323 33457899999999998877553 33345788854
No 379
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.61 E-value=0.17 Score=39.36 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=32.1
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT 51 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 51 (216)
+..-++...++|++++.|.=| ++|.|..+|.+.|.|++....+..
T Consensus 78 P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp EEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred chhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEee
Confidence 344455668899999998554 899999999999999987766655
No 380
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.53 E-value=0.23 Score=37.49 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=70.5
Q ss_pred CCEEEEEcC----------CCcEEEEECCCC----ceEE---EEeCCCCcc-------------cCcEEEEEECCCcc-e
Q 043942 26 GQLLASGGF----------HGLVQNRDTSSR----NLQC---TVEGPRGGI-------------EDSTVWMWNADRGA-Y 74 (216)
Q Consensus 26 ~~~l~s~~~----------d~~v~vwd~~~~----~~~~---~~~~~~~~~-------------~~~~v~i~d~~~~~-~ 74 (216)
..+|+.|.. .|.+.++++... ..+. .... .+++ .++.|.+|++...+ .
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~-~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l 120 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV-KGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTL 120 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE-SS-EEEEEEETTEEEEEETTEEEEEEEETTSSE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee-cCcceEhhhhCCEEEEeecCEEEEEEccCcccc
Confidence 467777652 288999999884 1221 1221 1112 78899999998776 3
Q ss_pred eeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 75 LNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 75 ~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
.....- ....+.++... +++++.|...+.+.++..+. +..+..+.... ....++++.+-+++.
T Consensus 121 ~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~-------------~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 121 LKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDY-------------QPRWVTAAEFLVDED 185 (321)
T ss_dssp EEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEES-------------S-BEEEEEEEE-SSS
T ss_pred hhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecC-------------CCccEEEEEEecCCc
Confidence 333221 22345555544 66999999888888875543 22233332110 234467777765556
Q ss_pred EEEEecccCeE
Q 043942 153 YLVTGCVDGKV 163 (216)
Q Consensus 153 ~l~~~~~~~~i 163 (216)
.++.+..+|.+
T Consensus 186 ~~i~~D~~gnl 196 (321)
T PF03178_consen 186 TIIVGDKDGNL 196 (321)
T ss_dssp EEEEEETTSEE
T ss_pred EEEEEcCCCeE
Confidence 77777777776
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.49 E-value=0.22 Score=37.14 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=54.0
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
-.+.+..+.-+++|++++++..-....-||.-...-...... ....+..+.|+|++...+.+ ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~---------------~~~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN---------------SSRRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----------------SSS-EEEEEE-TTS-EEEEE-TT
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC---------------ccceehhceecCCCCEEEEe-CC
Confidence 345688888899999999988777777887553322222222 45789999999998765544 55
Q ss_pred CeE-------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 161 GKV-------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 161 ~~i-------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
|.+ ......+.+++|.++++..++++ .|.+.+
T Consensus 207 g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 207 GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV 257 (302)
T ss_dssp TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred cEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence 555 11223479999999888777665 555543
No 382
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.48 E-value=0.024 Score=28.51 Aligned_cols=32 Identities=9% Similarity=0.336 Sum_probs=26.5
Q ss_pred CCeeEEEEcCCC---cEEEEecCCCeEEEEeCCCC
Q 043942 83 SGLTCGDFTTDG---KTICTGSDNATLSIWNPKGG 114 (216)
Q Consensus 83 ~~v~~~~~~~~~---~~l~t~~~d~~i~~wd~~~~ 114 (216)
+.+.+++|+|.. .+|+.+-.-+.+.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 58888888899999999953
No 383
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.47 E-value=0.12 Score=42.35 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeee-ccCCCeeEEEEc--CCCcEEEEecCCC
Q 043942 28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS-GHGSGLTCGDFT--TDGKTICTGSDNA 104 (216)
Q Consensus 28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~t~~~d~ 104 (216)
.++.|+.-+.+.+.|- ...++.|||.+.+.....-. ...+.|.+++|. |+++.+++.+..+
T Consensus 33 ~li~gss~~k~a~V~~----------------~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDS----------------SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred ceEeecccCcEEEEEC----------------CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 4666666666665543 45678899998776443322 346789999995 5888898888999
Q ss_pred eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 105 TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 105 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
.|.++.-.........+ .- ...+..........+|.+..|.++|..++.++.
T Consensus 97 ~v~l~~Q~R~dy~~~~p--~w-~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGP--SW-APIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred EEEEEEccchhhhcCCc--cc-ceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 99998643211000000 00 000111111113478999999999987776554
No 384
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.04 Score=47.28 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=79.0
Q ss_pred EEeecccc-ceEEEEEccCCCEEEE--EcCCCcEEEEECCCCceEE-----EEeCCCCcc--------------------
Q 043942 8 SEILGHKD-SFSSLAFSTDGQLLAS--GGFHGLVQNRDTSSRNLQC-----TVEGPRGGI-------------------- 59 (216)
Q Consensus 8 ~~~~~h~~-~v~~~~~s~~~~~l~s--~~~d~~v~vwd~~~~~~~~-----~~~~~~~~~-------------------- 59 (216)
.+++-|.. ++..+...+|+...+. .+.+..|..||+++-.... -+..+....
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 44554443 5667777788765443 3445578899987542211 111111100
Q ss_pred ---cCcEEEEEECCCc-ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEE
Q 043942 60 ---EDSTVWMWNADRG-AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 60 ---~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (216)
.|+.|++..+... .....+. -....++++|+|.|+.++.|-..|++.-|... .+....++..+..
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~--------- 241 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE--------- 241 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC---------
Confidence 4555555444321 1112222 34568999999999999999999999888765 4444445443322
Q ss_pred eeeecCeEEEEeCCCCcEEEE
Q 043942 136 TSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~l~~ 156 (216)
....|.+++|-....++++
T Consensus 242 --e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 242 --ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --CCcceeEEEEecceeEEEE
Confidence 3466888888766666554
No 385
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.38 E-value=0.22 Score=37.51 Aligned_cols=62 Identities=13% Similarity=0.311 Sum_probs=45.4
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEE-ecCCCeEEEEeCCCCceeEEeec
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICT-GSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t-~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
....|-++|+.+++.+.++.. ...+.+|..+.+.+ +|.+ ...++.+.+||..+|+.+..+..
T Consensus 267 pgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 455688889999999988874 34588999998765 5544 45689999999999999888764
No 386
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.33 Score=37.68 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=86.5
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
.++.|.+.|..+.+......- ......++++|+++.+..+.. ++.+.+.|..+++.......
T Consensus 94 ~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-------------- 158 (381)
T COG3391 94 DSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-------------- 158 (381)
T ss_pred CCCeEEEEcCcccceeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec--------------
Confidence 467888888776666655442 226778999999977766554 78999999998888777553
Q ss_pred eeecCeEEEEeCCCCcEEEEec-ccCeE----------Eee--------eCCEEEEEEecCCCeEEEEeCC---CcEEEE
Q 043942 137 SLYDGVTCLSWPGTSKYLVTGC-VDGKV----------DGH--------IDAIQSLSVSAIRESLVSVSVD---GTARVF 194 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~~-~~~~i----------~~~--------~~~i~~~~~~~~~~~l~s~~~d---~~v~vw 194 (216)
...+ ..++++|+|+.++... .++.+ ..+ ......+.++|+|+++...-.. +.+...
T Consensus 159 -G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 159 -GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred -CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 2233 8899999999776665 44544 101 1234678889999866544332 588888
Q ss_pred Eccccccee
Q 043942 195 EIAEFRRAT 203 (216)
Q Consensus 195 ~~~~~~~~~ 203 (216)
|..++....
T Consensus 237 d~~~~~v~~ 245 (381)
T COG3391 237 DTATGNVTA 245 (381)
T ss_pred eCCCceEEE
Confidence 877755443
No 387
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=0.01 Score=41.47 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=58.5
Q ss_pred CCEEEEEcCCCcEEEEECCCCc----------e--EEEEeCCCC------cccCcEEEEEECCCcceeeeeeccC-CCee
Q 043942 26 GQLLASGGFHGLVQNRDTSSRN----------L--QCTVEGPRG------GIEDSTVWMWNADRGAYLNMFSGHG-SGLT 86 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~----------~--~~~~~~~~~------~~~~~~v~i~d~~~~~~~~~~~~~~-~~v~ 86 (216)
+..++.|+.+|.|.+|...-.. . ...+..... ...++.|+.|++..++.+.....|+ ..+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 4568899999999999876211 0 011111111 1188999999988877777666676 4555
Q ss_pred EEEEcCCCcEEEEe--cCCCeEEEEeCCCC
Q 043942 87 CGDFTTDGKTICTG--SDNATLSIWNPKGG 114 (216)
Q Consensus 87 ~~~~~~~~~~l~t~--~~d~~i~~wd~~~~ 114 (216)
.......++.++.+ |.|..++.|++..-
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 55556666777777 77777888877643
No 388
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.29 E-value=0.44 Score=38.30 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=62.3
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-------------------cc----cCcEEEEEECCCcceeeeeeccC
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-------------------GI----EDSTVWMWNADRGAYLNMFSGHG 82 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------------------~~----~~~~v~i~d~~~~~~~~~~~~~~ 82 (216)
+..++.++.++.+...|..+++.+-..+.... .+ .++.|+-+|.++|+.+.+.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 44677777889999999999887765543221 11 56788888999998887665332
Q ss_pred CC--eeEEEEcC--CCcEEEEec---------CCCeEEEEeCCCCceeEEeec
Q 043942 83 SG--LTCGDFTT--DGKTICTGS---------DNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 83 ~~--v~~~~~~~--~~~~l~t~~---------~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.. -..+.-+| .+..++.++ .++.+..+|..+|+.+-.+..
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 21 00111112 123454443 368899999999998877654
No 389
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.28 E-value=0.037 Score=27.82 Aligned_cols=31 Identities=35% Similarity=0.432 Sum_probs=25.0
Q ss_pred cceEEEEEccC-C--CEEEEEcCCCcEEEEECCC
Q 043942 15 DSFSSLAFSTD-G--QLLASGGFHGLVQNRDTSS 45 (216)
Q Consensus 15 ~~v~~~~~s~~-~--~~l~s~~~d~~v~vwd~~~ 45 (216)
+.|.++.|+|. + ++|+.+-..+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999984 4 5888888788888888874
No 390
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.23 E-value=0.056 Score=42.01 Aligned_cols=48 Identities=21% Similarity=0.117 Sum_probs=38.7
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 54 (216)
...|......+.+++.+|++++.|+.+.-|.|.++|+.++..++.+++
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 345556667799999999999999988889999999998876655544
No 391
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.32 Score=35.61 Aligned_cols=84 Identities=10% Similarity=0.170 Sum_probs=53.8
Q ss_pred CcEEEEEECCCcceeeeeeccCCC--eeEEEEcCCCcEEEEecC-----CCeEEEEeCCCCc-eeEEeecccccccccce
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSG--LTCGDFTTDGKTICTGSD-----NATLSIWNPKGGE-NFHAIRRSSLEFSLNYW 132 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~t~~~-----d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~ 132 (216)
.-...++|.++.+...++...++. .---.|+|||.+|...-. .|.|-+||.+.+- .+-++..
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t---------- 159 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST---------- 159 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc----------
Confidence 344567888776655554432221 122458999999876543 3779999998542 3445554
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
+.-..-.+.|.+||+.++.+..
T Consensus 160 -----~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 160 -----HGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred -----CCcCcceeEEecCCcEEEEeCC
Confidence 5555667788889988877643
No 392
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.042 Score=47.17 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=73.1
Q ss_pred cCcEEEEEECCCccee-----eeee------ccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCce-eEEeeccccc
Q 043942 60 EDSTVWMWNADRGAYL-----NMFS------GHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGEN-FHAIRRSSLE 126 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~ 126 (216)
.+-.|..||+++-... .-+. .......++.|+|.-. ..+....|+.|++.-+..... ...++
T Consensus 122 ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p----- 196 (1405)
T KOG3630|consen 122 NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP----- 196 (1405)
T ss_pred CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-----
Confidence 4457888998753211 1111 1223456788888533 345666888888877664332 22223
Q ss_pred ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEE
Q 043942 127 FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSV 185 (216)
Q Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~ 185 (216)
.....++++|+|.|..++.|-.+|.+ ..-...|.+++|-....++++-
T Consensus 197 -----------~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 197 -----------VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -----------cccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 56778999999999999999999988 1114689999998887777653
No 393
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.96 E-value=0.53 Score=36.21 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=57.3
Q ss_pred CCCCceeEEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------
Q 043942 1 INQGDWASEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------- 59 (216)
Q Consensus 1 l~~g~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------- 59 (216)
|++++ +.+|..+. .......++|+++.++-......++--|+.+.+....+..+..-.
T Consensus 67 L~t~~-i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~ 145 (386)
T PF14583_consen 67 LATGE-ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEIS 145 (386)
T ss_dssp TTT-E-EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEE
T ss_pred cccCE-EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEe
Confidence 34554 34455433 223356778888877666556788888999887655554443311
Q ss_pred --------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecC------CCeEEEEeCC
Q 043942 60 --------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSD------NATLSIWNPK 112 (216)
Q Consensus 60 --------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~------d~~i~~wd~~ 112 (216)
....|.-.|+.+|+....+. ....+.-+.|+|. ...|+-|.. |..|.+.+.+
T Consensus 146 ~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 146 REDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp GGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred ehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 56667777888877655555 4566778899994 455555542 3345555544
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.024 Score=39.72 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=51.8
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------- 163 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------- 163 (216)
-+..++.|+.+|.|.+|.............. ......+.+.-..++.+..+++.+|.+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-------------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-------------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-------------ccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 3567899999999999987722111111100 011111222223345577778888877
Q ss_pred -----Eeee-CCEEEEEEecCCCeEEEE--eCCCcEEEEEcccc
Q 043942 164 -----DGHI-DAIQSLSVSAIRESLVSV--SVDGTARVFEIAEF 199 (216)
Q Consensus 164 -----~~~~-~~i~~~~~~~~~~~l~s~--~~d~~v~vw~~~~~ 199 (216)
..|. .++..+..+..+++++.+ |.|..++.|++...
T Consensus 136 ~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 136 VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 2222 344455555555666666 66667777776543
No 395
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.91 E-value=0.37 Score=35.07 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=55.4
Q ss_pred CeeEEEEcCCCcEEEEec---CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 84 GLTCGDFTTDGKTICTGS---DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
.+.+.+++++++.++... ....++++... ....... ....+....|++++...+....+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~----------------~g~~l~~PS~d~~g~~W~v~~~~ 86 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL----------------TGGSLTRPSWDPDGWVWTVDDGS 86 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec----------------cCCccccccccCCCCEEEEEcCC
Confidence 688999999998776655 34445555543 2222221 11244555666665443332222
Q ss_pred CeE------------------EeeeCCEEEEEEecCCCeEEEEe---CCCcEEEEEcc
Q 043942 161 GKV------------------DGHIDAIQSLSVSAIRESLVSVS---VDGTARVFEIA 197 (216)
Q Consensus 161 ~~i------------------~~~~~~i~~~~~~~~~~~l~s~~---~d~~v~vw~~~ 197 (216)
... ..-...|+.+.+||||..++... .++.|.+=-+.
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 87 GGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred CceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 211 11112899999999998776544 35777776654
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.25 Score=36.23 Aligned_cols=120 Identities=10% Similarity=0.175 Sum_probs=72.9
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc------cccccc-eEEEeeeecCeEEEEeCCCC
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL------EFSLNY-WMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~v~~~~~~~~~ 151 (216)
.+-...+.++.|+|+.+.|.+......-.++=..+|+.+..++.... +..... +.+.......++-+...+++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 34445599999999999998887777777776677888888775322 111111 11111223334445555554
Q ss_pred cEEEEecccCeE--Eee-eCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 152 KYLVTGCVDGKV--DGH-IDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 152 ~~l~~~~~~~~i--~~~-~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
..+-.....-.+ ..+ ......++|+|..+.|..+-+-+=+.||.+..
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 443322211011 112 55678999999998888888777777777653
No 397
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.81 E-value=0.21 Score=35.94 Aligned_cols=132 Identities=11% Similarity=0.148 Sum_probs=68.0
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-C--CeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-N--ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
-.+||+.+++....-...+--..+-.+-+||+++.+|+. + ..+++++..+............... ...
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~---------~~R 118 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ---------SGR 118 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc---------CCC
Confidence 457888876543221122233444567889999999874 2 3466666543110001100000000 111
Q ss_pred CeEEEEeCCCCcEEEEecccCeE-----E-e------------------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 141 GVTCLSWPGTSKYLVTGCVDGKV-----D-G------------------HIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~~i-----~-~------------------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
---....-|||+.|+.|+..... . . ....---+...|+|++++.+..+. .|||.
T Consensus 119 WYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~ 196 (243)
T PF07250_consen 119 WYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDY 196 (243)
T ss_pred ccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeC
Confidence 12233345789988888876543 0 0 001112345568999998887654 46787
Q ss_pred ccccceeecC
Q 043942 197 AEFRRATKAP 206 (216)
Q Consensus 197 ~~~~~~~~~~ 206 (216)
.+.+.+..+|
T Consensus 197 ~~n~v~~~lP 206 (243)
T PF07250_consen 197 KTNTVVRTLP 206 (243)
T ss_pred CCCeEEeeCC
Confidence 7765544443
No 398
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.77 E-value=0.25 Score=34.58 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=34.7
Q ss_pred cEEEEecCCCeEEEEeCCC--CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 95 KTICTGSDNATLSIWNPKG--GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 95 ~~l~t~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
+.|+.+...+.|.+|++.. .+....|. .-+.|..+.++..|.++++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----------------Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS----------------TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc----------------chhheeEEEeccccceEEEEEee
Confidence 4444446667899999983 34556665 44778888888888888876443
No 399
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.69 E-value=0.71 Score=35.55 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=43.9
Q ss_pred CCCceeEEeeccccceE-----EEEEccCCCEEEEEc-CC--CcEEEEECCCCceEEEEeCCCCcc--------------
Q 043942 2 NQGDWASEILGHKDSFS-----SLAFSTDGQLLASGG-FH--GLVQNRDTSSRNLQCTVEGPRGGI-------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~-----~~~~s~~~~~l~s~~-~d--~~v~vwd~~~~~~~~~~~~~~~~~-------------- 59 (216)
.||-.+..|..+...-. .=+|.+||+.|+.++ .| ..+.+.|+.+++..+.-.+.....
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 35666777764433222 235677887666554 34 456777888888776655432211
Q ss_pred --cCcEEEEEECCCcceeeeeeccCCCeeEEEEc--CCCcEEE
Q 043942 60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT--TDGKTIC 98 (216)
Q Consensus 60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~ 98 (216)
.+..|.-.|+++.+....+......+-...|. .++..++
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEE
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEE
Confidence 34456666677766555555555555445553 3555543
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.68 E-value=0.32 Score=40.89 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=55.8
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
-.|..+.++|+|+++|..|..|. .|-.+... -....++... ..-..+.+.+.. ... ...+...|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~---~~i~Crt~~v~~--~~~-~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGK---KEINCRTVPVDE--RFF-TSNSSLEIKQVRWHPW 157 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCC---cceeEEEEEech--hhc-cCCCCceEEEEEEcCC
Confidence 36889999999999999987554 44333211 1001111000 001122222211 111 1234567899999995
Q ss_pred ---CcEEEEecCCCeEEEEeCCCCc
Q 043942 94 ---GKTICTGSDNATLSIWNPKGGE 115 (216)
Q Consensus 94 ---~~~l~t~~~d~~i~~wd~~~~~ 115 (216)
+..|+.-..|+++++||+....
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCCC
Confidence 5789999999999999998654
No 401
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.66 E-value=0.18 Score=39.86 Aligned_cols=123 Identities=15% Similarity=0.238 Sum_probs=76.4
Q ss_pred CCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECC-Ccceeeeeecc
Q 043942 25 DGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNAD-RGAYLNMFSGH 81 (216)
Q Consensus 25 ~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~-~~~~~~~~~~~ 81 (216)
+..+|. .++....++--|++.|+.+.++..+...+ ++..|.-.|.+ .|..+...+.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es- 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES- 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-
Confidence 444444 44555667777788888877776655432 56666666665 2333332221
Q ss_pred CCCeeEEEEcC----CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 82 GSGLTCGDFTT----DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 82 ~~~v~~~~~~~----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
...++.-.|+. ...+++.|+..|-|++||--.-+....++. ....|..+..+.+|.++++.
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~---------------lG~aIk~idvta~Gk~ilaT 621 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG---------------LGDAIKHIDVTANGKHILAT 621 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc---------------cccceeeeEeecCCcEEEEe
Confidence 12222222322 345899999999999999664444444554 67888999999999988766
Q ss_pred cccCeE
Q 043942 158 CVDGKV 163 (216)
Q Consensus 158 ~~~~~i 163 (216)
+..-.+
T Consensus 622 Ck~yll 627 (776)
T COG5167 622 CKNYLL 627 (776)
T ss_pred ecceEE
Confidence 655433
No 402
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.57 E-value=1.2 Score=37.32 Aligned_cols=111 Identities=12% Similarity=0.107 Sum_probs=67.0
Q ss_pred CeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCc-eeEEe----e--cccccccccceEEEeeeecCeEEEEeC--CCCc
Q 043942 84 GLTCGDFTT--DGKTICTGSDNATLSIWNPKGGE-NFHAI----R--RSSLEFSLNYWMICTSLYDGVTCLSWP--GTSK 152 (216)
Q Consensus 84 ~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~-~~~~~----~--~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 152 (216)
.|+-|.... +...|+.|.+||.|.+|.+++-. .+... . .......+. ...........++++ ...+
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~---f~~~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF---FHLRVGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC---eEeecCCceeEEEEEecCcce
Confidence 344444433 45688899999999999774210 00000 0 000000000 011134467778887 7777
Q ss_pred EEEEecccCeE-----------------EeeeCCEEEEEEecCC---C---eEEEEeCCCcEEEEEcc
Q 043942 153 YLVTGCVDGKV-----------------DGHIDAIQSLSVSAIR---E---SLVSVSVDGTARVFEIA 197 (216)
Q Consensus 153 ~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~---~---~l~s~~~d~~v~vw~~~ 197 (216)
+||+++....| ..+...|.+++|-++. . .|++++-.|.+.+|++.
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 88877777666 2355678899997643 2 77888889999998883
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.74 Score=38.26 Aligned_cols=33 Identities=24% Similarity=0.222 Sum_probs=21.9
Q ss_pred CCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+.+..+..||+.++|+--..+|.+.+-+....+
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhh
Confidence 456677777777777777777777666554433
No 404
>PRK10115 protease 2; Provisional
Probab=95.46 E-value=0.71 Score=38.87 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=45.8
Q ss_pred ceEEEEEccCCCEEEEEcCC-CcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942 16 SFSSLAFSTDGQLLASGGFH-GLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 94 (216)
.+..+.++|||++|+.+... |. ....+++.|+.++..+...-... -..++|.+|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~----------------------E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~ 183 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSR----------------------RQYGIRFRNLETGNWYPELLDNV--EPSFVWANDS 183 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCc----------------------EEEEEEEEECCCCCCCCccccCc--ceEEEEeeCC
Confidence 35667788888877765322 21 44557777887775332211111 1468999988
Q ss_pred cEEEEecCC------CeEEEEeCCCC
Q 043942 95 KTICTGSDN------ATLSIWNPKGG 114 (216)
Q Consensus 95 ~~l~t~~~d------~~i~~wd~~~~ 114 (216)
+.|+....+ ..|+.+++.++
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCC
Confidence 866655332 36888888877
No 405
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=95.43 E-value=0.83 Score=35.98 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=25.4
Q ss_pred CCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
..|.+++..+..+.+++.+.++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999999999999999999999975
No 406
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.26 Score=39.08 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=75.8
Q ss_pred CCCCceeEEeeccccceEEEEEccCCC--E-----EEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQ--L-----LASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------ 59 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~--~-----l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------ 59 (216)
|++|+.+.+.+-|.+ |+-+.+.|+.+ . -+.|-.|..|.-||++-.. .+...+.+.-.-
T Consensus 363 IE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s 441 (644)
T KOG2395|consen 363 IERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES 441 (644)
T ss_pred cccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC
Confidence 678999999998877 77888888653 2 2345567889999987432 222222222111
Q ss_pred -------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 60 -------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 60 -------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
.+|.|++||--..+....+.+-..+|..+..+.+|++|+..+ +..+.+.++.
T Consensus 442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 789999999743344445777888999999999999887654 5577777664
No 407
>PHA02713 hypothetical protein; Provisional
Probab=95.38 E-value=0.94 Score=37.16 Aligned_cols=32 Identities=6% Similarity=0.051 Sum_probs=21.7
Q ss_pred CCCeEEEEeCCC--cEEEEEcccccceeecCCcc
Q 043942 178 IRESLVSVSVDG--TARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 178 ~~~~l~s~~~d~--~v~vw~~~~~~~~~~~~~~~ 209 (216)
+++..++||.|+ .+-.||..+.+=....|.|+
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 677788888887 67788887766444434333
No 408
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.6 Score=32.65 Aligned_cols=88 Identities=20% Similarity=0.233 Sum_probs=56.5
Q ss_pred CCCEEEEEcCC--CcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCcceeeeeeccCCCe
Q 043942 25 DGQLLASGGFH--GLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRGAYLNMFSGHGSGL 85 (216)
Q Consensus 25 ~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~v 85 (216)
+|.++.+.+.- ..|++||+.+++.+.......... .++.-..+|.++-+.+..+. -++.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 45667776643 469999999998887766553222 67777777877766655544 23333
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGGE 115 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~ 115 (216)
..++ .|+..|+.++...+++.-|.++..
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhh
Confidence 4444 356667776666677777766543
No 409
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.24 E-value=1 Score=34.57 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=25.1
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCce
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNL 48 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~ 48 (216)
...+....|||+|+.+|-.. ++.|.+++..+++.
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 45677888999998888776 57888888776643
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.18 E-value=1.2 Score=34.96 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=28.0
Q ss_pred CEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.+.+++.+|++++.++...=|.|.++|+.++..+.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr 343 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR 343 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh
Confidence 47889999999888776656999999998766443
No 411
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.13 E-value=0.19 Score=35.70 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=24.0
Q ss_pred EcCCCcEEEEecCCCeEEEEeCCCCceeE
Q 043942 90 FTTDGKTICTGSDNATLSIWNPKGGENFH 118 (216)
Q Consensus 90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~ 118 (216)
+..++.++++-+.+|.+++||+.+++.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 34568899999999999999999887643
No 412
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.10 E-value=1.4 Score=35.48 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=65.3
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEEeCCCC-----------------------------cccCcEEEEEECCCcceeeee
Q 043942 28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRG-----------------------------GIEDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----------------------------~~~~~~v~i~d~~~~~~~~~~ 78 (216)
.++.++.+|.+...|..+++.+-..+.... ...++.+.-.|..+++.+-+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~ 382 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEK 382 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEe
Confidence 577888999999999999988766542100 002577888898888877665
Q ss_pred eccC--------CCe--eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 79 SGHG--------SGL--TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 79 ~~~~--------~~v--~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.... ... ..+.. .+..++.++.||.++.+|.++|+.+-.++.
T Consensus 383 ~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 383 REGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 4320 111 11222 467888889999999999999998877764
No 413
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.08 E-value=0.9 Score=33.09 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=62.7
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCCcceeeeeecc-----CCCeeEEE
Q 043942 28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADRGAYLNMFSGH-----GSGLTCGD 89 (216)
Q Consensus 28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~~~~~~~~~~~-----~~~v~~~~ 89 (216)
...-.-.++...+||..+.+.+.++.-+..+- ....++++|..+.+....+.-. -..++.+.
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE 181 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELE 181 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEE
T ss_pred EEEEEecCCeEEEEccccceEEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEE
Confidence 33344567889999999999998887654432 5567888898877666555422 23466777
Q ss_pred EcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942 90 FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS 124 (216)
Q Consensus 90 ~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 124 (216)
|- +|...|=.=....|...|..+|+....+....
T Consensus 182 ~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 182 YI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp EE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred EE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 76 67666666677789999999999888777543
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.03 E-value=1.2 Score=34.36 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=14.4
Q ss_pred cceEEEEEccCCCEEEEEc
Q 043942 15 DSFSSLAFSTDGQLLASGG 33 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~ 33 (216)
.....|+|.++|+++++-.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~ 32 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEG 32 (367)
T ss_pred CCCceeeECCCCCEEEEeC
Confidence 3456899999998777654
No 415
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.97 E-value=0.57 Score=41.28 Aligned_cols=130 Identities=14% Similarity=0.227 Sum_probs=80.1
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEE-cCC-------CcEEEEecCCCeEEEEeCCCCce---eEEeeccccccc
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDF-TTD-------GKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFS 128 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~-------~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~ 128 (216)
-|+.+.+|+.+++.....+.+-...|..+.. -|. =++++.-+.--.|.++-+.-.+. ...+..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~------ 170 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT------ 170 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc------
Confidence 7889999999987776666666555555543 222 22333333333444443321110 000100
Q ss_pred ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------------------------E-eeeCCEEE
Q 043942 129 LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------------------------D-GHIDAIQS 172 (216)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------------------------~-~~~~~i~~ 172 (216)
..........|+++....+|+.+++|-.++.. . .+..+|..
T Consensus 171 ---~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 171 ---SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred ---ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 01111145668888878888877766555332 2 45679999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 173 LSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 173 ~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+..+...+.+.+-+..++|.+|++..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 99988888999999999999999976
No 416
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.94 E-value=0.34 Score=33.00 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=25.4
Q ss_pred CCeeEEEEcCCC------cEEEEecCCCeEEEEeCCC
Q 043942 83 SGLTCGDFTTDG------KTICTGSDNATLSIWNPKG 113 (216)
Q Consensus 83 ~~v~~~~~~~~~------~~l~t~~~d~~i~~wd~~~ 113 (216)
..+..++|+|.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 3688889999999998764
No 417
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.70 E-value=2 Score=35.09 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCC--------------Cc-------c----cCcEEEEEECCCcceeeeeec
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--------------GG-------I----EDSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--------------~~-------~----~~~~v~i~d~~~~~~~~~~~~ 80 (216)
+..++.++.++.|+-.|..+++.+-++.... .. + .++.+.-+|.++|+.+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4567777778899999999998777654311 00 0 577788888888888765542
Q ss_pred cCCC-eeEEEEcC---CCcEEEEec------CCCeEEEEeCCCCceeEEeec
Q 043942 81 HGSG-LTCGDFTT---DGKTICTGS------DNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 81 ~~~~-v~~~~~~~---~~~~l~t~~------~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.... -..+.-+| ++. ++.+. .++.|.-+|.++|+.+-.+..
T Consensus 149 ~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred ccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 1100 01111122 344 44443 368999999999998876654
No 418
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.61 E-value=1.5 Score=33.37 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=24.1
Q ss_pred CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942 84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN 116 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 116 (216)
..+.|+|.||++.+++ ...|.|++++ ..+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~ 33 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSL 33 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcC
Confidence 3578999999877665 5699999999 44554
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.07 E-value=3.4 Score=35.33 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC------------------------------------cc----cCcEEE
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG------------------------------------GI----EDSTVW 65 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~------------------------------------~~----~~~~v~ 65 (216)
+..+..++.++.|.-.|..+|+.+-+++.... .+ .|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777788889999999999987766543211 01 566677
Q ss_pred EEECCCcceeeeeeccCCCe-------------eEEEEcC--CCcEEEEecC----------CCeEEEEeCCCCceeEEe
Q 043942 66 MWNADRGAYLNMFSGHGSGL-------------TCGDFTT--DGKTICTGSD----------NATLSIWNPKGGENFHAI 120 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~t~~~----------d~~i~~wd~~~~~~~~~~ 120 (216)
-.|.++|+....+.. .+.+ ..+.-.| .+..+++|+. +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 778888887765531 1111 0111122 2345555532 688999999999998777
Q ss_pred ec
Q 043942 121 RR 122 (216)
Q Consensus 121 ~~ 122 (216)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 64
No 420
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.94 E-value=0.52 Score=33.50 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=50.9
Q ss_pred EccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec
Q 043942 22 FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS 101 (216)
Q Consensus 22 ~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~ 101 (216)
+..++++|++...+|.+++||+.+++....-. .+..+-....... ......|..+.++.+|.-+++-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-----------Si~pll~~~~~~~-~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-----------SIAPLLNSSPVSD-KSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-----------cHHHHhccccccc-CCCCCcEEEEEEcCCCCEEEEEe
Confidence 44568899999999999999998876533210 0000000000000 03456688888888887776654
Q ss_pred CCCeEEEEeCCCCceeE
Q 043942 102 DNATLSIWNPKGGENFH 118 (216)
Q Consensus 102 ~d~~i~~wd~~~~~~~~ 118 (216)
+|..+.|+..-+.-..
T Consensus 86 -ng~~y~y~~~L~~W~~ 101 (219)
T PF07569_consen 86 -NGDSYSYSPDLGCWIR 101 (219)
T ss_pred -CCCEEEeccccceeEE
Confidence 4678888877554444
No 421
>PRK13684 Ycf48-like protein; Provisional
Probab=93.91 E-value=2.2 Score=32.55 Aligned_cols=100 Identities=11% Similarity=0.113 Sum_probs=55.6
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG 161 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 161 (216)
...++++.+.++++.++++ ..|.+.+=..+.+..-......... ....+..+.+.+++..+++ +.+|
T Consensus 214 ~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~-----------~~~~l~~v~~~~~~~~~~~-G~~G 280 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEIT-----------NGYGYLDLAYRTPGEIWAG-GGNG 280 (334)
T ss_pred cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccc-----------cccceeeEEEcCCCCEEEE-cCCC
Confidence 4568899999998877765 4566543233444332211110000 1234677888887765544 4555
Q ss_pred eE----------Ee------eeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 162 KV----------DG------HIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 162 ~i----------~~------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
.+ .. -....+.+.|..+++.++ .+..|.|..|+
T Consensus 281 ~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 281 TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 54 11 112466777766666655 45678877665
No 422
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.55 E-value=0.02 Score=44.60 Aligned_cols=122 Identities=10% Similarity=0.162 Sum_probs=77.2
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee-
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS- 79 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~- 79 (216)
.....|-|.+.-++.++.+..+..||-... .......+...+ ..+.+.+||+.+...- .+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc-eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc
Confidence 335677787766888887878888875422 222221111111 7889999999854221 121
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
+-+..-.-+.|++....++.+...+.+.+++..+.+....... |...++++++.+.+..+.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk---------------h~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK---------------HQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc---------------cccceeEEEecccceeee
Confidence 1111122378899888999998899999999887665444433 777888888888765443
No 423
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=93.41 E-value=0.39 Score=37.61 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=83.9
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCC
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGS 83 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 83 (216)
++.++.+..-...|..+-..|||+.|..-+. ..+.++++.+...... ++-|-..+... .
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-------------kl~~dspg~~~-------~ 268 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-------------KLVDDSPGDSR-------H 268 (733)
T ss_pred hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-------------hhhhcCCCchH-------H
Confidence 3444445555667888889999998776554 4666776654322100 00000001000 1
Q ss_pred Cee-EEEEcCCCcEEEEecCCCeEEEE-eCCCCcee--EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 84 GLT-CGDFTTDGKTICTGSDNATLSIW-NPKGGENF--HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 84 ~v~-~~~~~~~~~~l~t~~~d~~i~~w-d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
.|+ .+..-.-|.-++.++.||.|.-| |.+.+... .....- +. ...++..+.-..+.+-+++-+.
T Consensus 269 ~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f--~l----------~pa~~~~l~pe~~rkgF~~l~~ 336 (733)
T COG4590 269 QVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNF--KL----------APAEVQFLLPETNRKGFYSLYR 336 (733)
T ss_pred HHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeecc--cc----------CcccceeeccccccceEEEEcC
Confidence 111 11122345667778888888776 44433221 111110 00 1122222221222233444444
Q ss_pred cCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 160 DGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 160 ~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+|.+ ..-...+.-+++||++.++++- +.|.++++.+++..+.
T Consensus 337 ~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 337 NGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred CCceeeeecccCcceehhhhhcCcceeeeCcccchheee-cCCceEEEEecCCCCC
Confidence 5544 2222356778999999998865 3688999998875543
No 424
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.37 E-value=1.5 Score=35.94 Aligned_cols=40 Identities=18% Similarity=0.079 Sum_probs=31.1
Q ss_pred ceEEEEEcc----CCCEEEEEcCCCcEEEEECCCCceEEEEeCC
Q 043942 16 SFSSLAFST----DGQLLASGGFHGLVQNRDTSSRNLQCTVEGP 55 (216)
Q Consensus 16 ~v~~~~~s~----~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 55 (216)
.+..++.++ +..++++.+.|+.+|+||+.+++++.+....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 445566665 6689999999999999999999998877655
No 425
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.35 E-value=4.9 Score=34.85 Aligned_cols=119 Identities=8% Similarity=0.070 Sum_probs=73.0
Q ss_pred cCcEEEEEECCCcceeeeeecc--CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 60 EDSTVWMWNADRGAYLNMFSGH--GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
..|.|.++....+..+.....+ .+.+.++.-- +|+++|. -...|++|+..+.+.++.-..
T Consensus 805 ~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~--------------- 866 (1096)
T KOG1897|consen 805 VNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECN--------------- 866 (1096)
T ss_pred ccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhc---------------
Confidence 5677777777664333333222 2344443321 5666654 456899999988865554433
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
+..++..+...-.|..+++|..-+.+ ..+..+.+++.+-.+..++ -+..+|.+++-...
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFTVRKD 942 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEEEEEec
Confidence 66777888887788888888776666 3445667777765554444 34456777665443
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.25 E-value=2.9 Score=31.86 Aligned_cols=26 Identities=35% Similarity=0.416 Sum_probs=21.1
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEE
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRD 42 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd 42 (216)
..+.|+|.|||++|++- ..|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~e-~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE-RSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEEE-TTTEEEEEE
T ss_pred CceEEEEeCCCcEEEEe-CCceEEEEe
Confidence 45789999999877764 488888888
No 427
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.19 E-value=0.5 Score=22.96 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=16.8
Q ss_pred eeccccceEEEEEccCCCEEEEEcC
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGF 34 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~ 34 (216)
+......-....|||||++|+-++.
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEec
Confidence 3344556778999999998886653
No 428
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.90 E-value=1.9 Score=29.31 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=24.9
Q ss_pred CCEEEEEEecCC------CeEEEEeCCCcEEEEEccc
Q 043942 168 DAIQSLSVSAIR------ESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 168 ~~i~~~~~~~~~------~~l~s~~~d~~v~vw~~~~ 198 (216)
..+..++|||.| -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 3678888899999998664
No 429
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.66 E-value=2.9 Score=35.31 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=28.8
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN 47 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 47 (216)
...+.++.-+|.|+-++.+..||.+++|+.....
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 4567788889999999999999999999976543
No 430
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.59 E-value=0.66 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=23.2
Q ss_pred CCCcEEEEec-CCCeEEEEeCCCCceeEEeec
Q 043942 92 TDGKTICTGS-DNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 92 ~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~ 122 (216)
|+++.|.++. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666544 688999999988887777664
No 431
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=92.50 E-value=5.3 Score=33.01 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=46.9
Q ss_pred CCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceeee
Q 043942 25 DGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 25 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~~ 77 (216)
++...++|+.| ..+..||....+............ .-.++-.||..+.+-...
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 35688888888 346778877766333111111100 333466677665432111
Q ss_pred eeccCCCeeEEEE-cCCCcEEEEecCC------CeEEEEeCCCCcee
Q 043942 78 FSGHGSGLTCGDF-TTDGKTICTGSDN------ATLSIWNPKGGENF 117 (216)
Q Consensus 78 ~~~~~~~v~~~~~-~~~~~~l~t~~~d------~~i~~wd~~~~~~~ 117 (216)
-. .......... .-+|...++|+.+ .++..||..+++..
T Consensus 412 a~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 412 AP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 11 1111122221 1257788888755 34677888776543
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.50 E-value=4.3 Score=31.98 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=30.9
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
.||.+.+|+-+.-.....+.+ ---...+.|.+....+++++.+..+..|...
T Consensus 153 ~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 153 MDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 455555555443322222222 2223456777878888898888888888654
No 433
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.48 E-value=2.8 Score=35.97 Aligned_cols=89 Identities=12% Similarity=0.118 Sum_probs=54.8
Q ss_pred cceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceE--EEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942 15 DSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQ--CTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT 91 (216)
Q Consensus 15 ~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 91 (216)
.+..+++|+| +.+.||..+..|+-.||++..+... ..+..... ..|.| ++|.+ .+ ..-..+.|.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~--~~gsi-~~d~~---------e~-s~w~rI~W~ 212 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN--ISGSI-IFDPE---------EL-SNWKRILWV 212 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC--CCccc-cCCCc---------cc-CcceeeEec
Confidence 3567899999 4578999999999999999222111 11110000 11222 12211 11 445688898
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCcee
Q 043942 92 TDGKTICTGSDNATLSIWNPKGGENF 117 (216)
Q Consensus 92 ~~~~~l~t~~~d~~i~~wd~~~~~~~ 117 (216)
++.+.|+.++.. .+.++|+++....
T Consensus 213 ~~~~~lLv~~r~-~l~~~d~~~~~~~ 237 (765)
T PF10214_consen 213 SDSNRLLVCNRS-KLMLIDFESNWQT 237 (765)
T ss_pred CCCCEEEEEcCC-ceEEEECCCCCcc
Confidence 888888887654 6889999977653
No 434
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.35 E-value=3.9 Score=31.08 Aligned_cols=74 Identities=9% Similarity=0.009 Sum_probs=45.9
Q ss_pred CeeEEEEcCCCcEEEEecCC------CeEEEEeCCCCceeEEeeccc-ccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 84 GLTCGDFTTDGKTICTGSDN------ATLSIWNPKGGENFHAIRRSS-LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
..-+|++.+++.++++.-.+ ..|.-++.. |+....+..+. ........ .....+.....++++|+|+.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~-~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT-SGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc-ccccCCCCeEEEEECCCCCEEEE
Confidence 44578887788888887777 889999977 77766653321 11000000 00115567889999999996665
Q ss_pred ecc
Q 043942 157 GCV 159 (216)
Q Consensus 157 ~~~ 159 (216)
+.+
T Consensus 164 ~~E 166 (326)
T PF13449_consen 164 AME 166 (326)
T ss_pred EEC
Confidence 433
No 435
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.18 E-value=0.1 Score=44.00 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=31.1
Q ss_pred cCcEEEEEECC--Cccee-----eeeeccCCCeeEEEEcC---CCcEEEEecCCCeEEEEeCCCC
Q 043942 60 EDSTVWMWNAD--RGAYL-----NMFSGHGSGLTCGDFTT---DGKTICTGSDNATLSIWNPKGG 114 (216)
Q Consensus 60 ~~~~v~i~d~~--~~~~~-----~~~~~~~~~v~~~~~~~---~~~~l~t~~~d~~i~~wd~~~~ 114 (216)
.-|.+.|||+. .|+.. .....-...+.-+.|.| +.-++..+-.++.+++......
T Consensus 151 ~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH
Confidence 45667777765 23221 11222233455666665 5556666777888888766543
No 436
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.10 E-value=5.8 Score=32.49 Aligned_cols=109 Identities=9% Similarity=0.029 Sum_probs=61.7
Q ss_pred ccceEEEEEccCC----CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc---CC--C
Q 043942 14 KDSFSSLAFSTDG----QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH---GS--G 84 (216)
Q Consensus 14 ~~~v~~~~~s~~~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~---~~--~ 84 (216)
-+.|..+.|.|-+ .-|.+......|.||.+..... ++++.+..-..+ .- -
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~---------------------e~~K~l~sQtcEi~e~~pvL 114 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT---------------------ERNKLLMSQTCEIREPFPVL 114 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc---------------------ccccceeeeeeeccCCcccC
Confidence 3568899999843 2455555566777887642110 011111111100 11 1
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
.....|+|....|++-.....--+++++.... ...+. ..+.|-|.+|.+||+.|+++-.
T Consensus 115 pQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~----------------~~G~IhCACWT~DG~RLVVAvG 175 (671)
T PF15390_consen 115 PQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK----------------TSGLIHCACWTKDGQRLVVAVG 175 (671)
T ss_pred CCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc----------------CCceEEEEEecCcCCEEEEEeC
Confidence 24567999888877665554444555553322 22232 5678999999999998876543
No 437
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.74 E-value=0.7 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=22.1
Q ss_pred cCCCeEEEEe-CCCcEEEEEcccccceeecCC
Q 043942 177 AIRESLVSVS-VDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 177 ~~~~~l~s~~-~d~~v~vw~~~~~~~~~~~~~ 207 (216)
|++++|+++. .++.|.++|..+.+....++.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666544 578999999988777665544
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.68 E-value=6.1 Score=31.93 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=58.8
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCc----EEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDS----TVWMWNADRGAYLNMFSGHGSGLTCGDF 90 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~----~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 90 (216)
-.|..+..++.|..++-++.+|.+.++=.+..- ......|| +.+..-+. ..+.+-. ..-.+...+|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-------~~s~~eDgk~~v~CRt~~i~--~~~ftss-~~ltl~Qa~W 173 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-------KNSEFEDGKSTVNCRTTPVA--ERFFTSS-TSLTLKQAAW 173 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcC-------ccceecCCCceEEEEeeccc--ceeeccC-Cceeeeeccc
Confidence 357788889999999998888876654322111 11111233 11222222 2222211 2234678899
Q ss_pred cCCC---cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 91 TTDG---KTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 91 ~~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+|+. ..|..-+.|..+++||+.....+....+
T Consensus 174 HP~S~~D~hL~iL~sdnviRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 174 HPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPG 208 (741)
T ss_pred cCCccCCceEEEEecCcEEEEEecCCcchhhccCC
Confidence 9965 6777778899999999987766654443
No 439
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=6.5 Score=34.86 Aligned_cols=31 Identities=29% Similarity=0.301 Sum_probs=26.0
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCC
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSR 46 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 46 (216)
....++|+|...++|.+...|.|+++-...-
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccce
Confidence 4557899999999999999999999976543
No 440
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.60 E-value=4.5 Score=30.17 Aligned_cols=137 Identities=8% Similarity=0.084 Sum_probs=80.0
Q ss_pred CcEEEEEECCCcceeeeeec------cCCCeeEEEEcCCC-----cEE-EEecCCCeEEEEeCCCCceeEEeeccccccc
Q 043942 61 DSTVWMWNADRGAYLNMFSG------HGSGLTCGDFTTDG-----KTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFS 128 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 128 (216)
.-.+.+||+.+++.++++.- ..+.+..+.+.... .++ ++=+..+.|-|+|+.+++.-..... .....
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~ 111 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPD 111 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC-Cccee
Confidence 34566777777766655442 23456777776522 233 3333456899999999887665554 32222
Q ss_pred ccce-EE----EeeeecCeEEEEeCC---CCcEEEEecccCe-E-------------------------Eeee-CCEEEE
Q 043942 129 LNYW-MI----CTSLYDGVTCLSWPG---TSKYLVTGCVDGK-V-------------------------DGHI-DAIQSL 173 (216)
Q Consensus 129 ~~~~-~~----~~~~~~~v~~~~~~~---~~~~l~~~~~~~~-i-------------------------~~~~-~~i~~~ 173 (216)
+... .. .....+.+..++.+| ++++|+-....+. + .+.. .....+
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~ 191 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGM 191 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEE
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceE
Confidence 2111 11 111344577777765 6677765443332 2 1222 366788
Q ss_pred EEecCCCeEEEEeCCCcEEEEEccc
Q 043942 174 SVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 174 ~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+++++|.++++--..+.|..|+...
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTT
T ss_pred EECCCCcEEEecCCCCeEEEEeCCC
Confidence 8999999999888899999999876
No 441
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=91.41 E-value=0.29 Score=39.88 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=38.3
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC-eEEEEeC
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-TLSIWNP 111 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-~i~~wd~ 111 (216)
..+.+-|......+..++.|..++..++|.+.+..+++++-.| .|.++.+
T Consensus 295 ~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 295 NLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred ceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence 3366667777777788999999999999999999999887544 3555444
No 442
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.30 E-value=6 Score=31.07 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=32.7
Q ss_pred CcEEEEEECCCccee--eeeeccCCC--eeEEEEcCCCcEEEEec---CC-CeEEEEeCCCC
Q 043942 61 DSTVWMWNADRGAYL--NMFSGHGSG--LTCGDFTTDGKTICTGS---DN-ATLSIWNPKGG 114 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~t~~---~d-~~i~~wd~~~~ 114 (216)
...|+.|.+.+.... ..+...... ...+..++++++++..+ .+ ..+.+.|+..+
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 556777777765332 334443333 56788899999877533 33 56888888875
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.93 E-value=4.4 Score=30.09 Aligned_cols=54 Identities=11% Similarity=0.278 Sum_probs=37.1
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec------CCCeEEEEeCCCCc
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS------DNATLSIWNPKGGE 115 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~------~d~~i~~wd~~~~~ 115 (216)
..|++||..+.+-..--.+-.+.|+.+.|..+.+.++.|. ....+..||+.+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 4577777766554443344567899999987777777664 35568889888664
No 444
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.81 E-value=0.83 Score=37.33 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=29.8
Q ss_pred CCeeEEEEcC----CCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 83 SGLTCGDFTT----DGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 83 ~~v~~~~~~~----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.....+++++ +..++++.+.|+++++||+.+++.+.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 3455566666 678999999999999999999999776643
No 445
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.74 E-value=11 Score=32.99 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=68.0
Q ss_pred eEEEEEccC-CCEEEEEc----------CCCcEEEEECCCCceEEEEe---CCCCcc------------cCcEEEEEECC
Q 043942 17 FSSLAFSTD-GQLLASGG----------FHGLVQNRDTSSRNLQCTVE---GPRGGI------------EDSTVWMWNAD 70 (216)
Q Consensus 17 v~~~~~s~~-~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~---~~~~~~------------~~~~v~i~d~~ 70 (216)
|.++.|..| +.+++.|. ..|.|.++.+..++.++.+. ...... -+..|++|+..
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t 856 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWT 856 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEcc
Confidence 445557776 67777775 34778888877743333221 111111 67889999999
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
+.+.++.-..+..++..+...-.+..++.|.--+.+.+.-.+
T Consensus 857 ~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 857 TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 887777777788889999999999999999887877775544
No 446
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=90.68 E-value=5.7 Score=32.85 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=62.5
Q ss_pred CcEEEEEECCCccee--eeeeccCCCeeEEEEcCCCcEEEEecCC------CeEEEEeCCCCceeEEeecccccccccce
Q 043942 61 DSTVWMWNADRGAYL--NMFSGHGSGLTCGDFTTDGKTICTGSDN------ATLSIWNPKGGENFHAIRRSSLEFSLNYW 132 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
-..+..||..++... ..+. ....-.+++.. ++...++|+.| ..+..||.+..+-...-+...
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~-------- 369 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT-------- 369 (571)
T ss_pred cceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--------
Confidence 345566666655322 2222 12223344443 46788888888 357788888776433111100
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEE-ecCCCeEEEEeCCC----
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSV-SAIRESLVSVSVDG---- 189 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~-~~~~~~l~s~~~d~---- 189 (216)
........ .-+|...++|+.||.- ............ .-+|...++||.++
T Consensus 370 -----~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 370 -----KRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred -----ccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence 11111111 1256778888888754 001111112211 23677777787553
Q ss_pred --cEEEEEcccccce
Q 043942 190 --TARVFEIAEFRRA 202 (216)
Q Consensus 190 --~v~vw~~~~~~~~ 202 (216)
++..||..+.+-.
T Consensus 443 l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 443 LNSVECYDPETNTWT 457 (571)
T ss_pred cceEEEEcCCCCcee
Confidence 5677887765543
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.50 E-value=0.44 Score=40.46 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=15.9
Q ss_pred EccCCCEEEEEcCCCcEEEEEC
Q 043942 22 FSTDGQLLASGGFHGLVQNRDT 43 (216)
Q Consensus 22 ~s~~~~~l~s~~~d~~v~vwd~ 43 (216)
.||||+.||++..||.++.|.+
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eCCCCcEEEEeecCCccceeee
Confidence 5677777777777777777664
No 448
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.22 E-value=8.2 Score=30.86 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=26.3
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE 115 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~ 115 (216)
.-...+.|+|.||++.|++--..|.|++++..++.
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~ 62 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGE 62 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCc
Confidence 34557899999999877765446999999866543
No 449
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.06 E-value=1.3 Score=21.42 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=19.0
Q ss_pred ccCCCeeEEEEcCCCcEEEEec-CC--CeEEEE
Q 043942 80 GHGSGLTCGDFTTDGKTICTGS-DN--ATLSIW 109 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~-~d--~~i~~w 109 (216)
.....-....|+|||+.|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455677899999999887665 33 444444
No 450
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.91 E-value=12 Score=32.24 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=39.9
Q ss_pred CcEEEEEECCCcceeeeeeccCCC---------eeEEEEcC-CCc---EEEEecCCCeEEEEeCCCCceeEEee
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSG---------LTCGDFTT-DGK---TICTGSDNATLSIWNPKGGENFHAIR 121 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~---------v~~~~~~~-~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~ 121 (216)
.+.|.-.|.+||+..-.++..... ..-+.+.. +|+ .++.++.+|.+.++|-++|+.+...+
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 455666777788777666542111 11222322 453 78899999999999999998876543
No 451
>PHA03098 kelch-like protein; Provisional
Probab=89.88 E-value=9.7 Score=31.14 Aligned_cols=23 Identities=9% Similarity=-0.033 Sum_probs=15.6
Q ss_pred CCCeEEEEeCC-----CcEEEEEccccc
Q 043942 178 IRESLVSVSVD-----GTARVFEIAEFR 200 (216)
Q Consensus 178 ~~~~l~s~~~d-----~~v~vw~~~~~~ 200 (216)
+++.++.||.+ +.+.+||..+.+
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 66667777654 467888877643
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=9.6 Score=30.34 Aligned_cols=94 Identities=9% Similarity=0.081 Sum_probs=57.8
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
...++|.++.|++|.+.+|+--.+..|.+++....+.......... .....|...+|+.. .-++....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck-----------~k~~~IlGF~W~~s-~e~A~i~~ 131 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECK-----------TKNANILGFCWTSS-TEIAFITD 131 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhc-----------cCcceeEEEEEecC-eeEEEEec
Confidence 3567899999999999999999999999999853332222111000 02334666666544 22332222
Q ss_pred cCe-----------E---EeeeCCEEEEEEecCCCeEEEE
Q 043942 160 DGK-----------V---DGHIDAIQSLSVSAIRESLVSV 185 (216)
Q Consensus 160 ~~~-----------i---~~~~~~i~~~~~~~~~~~l~s~ 185 (216)
.|. + ..|.-.|.=..|+++.+.+.-+
T Consensus 132 ~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 132 QGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred CCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 221 1 5667777778888887755433
No 453
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=89.11 E-value=9.3 Score=33.12 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
-.|.|+.-+.+|+.+.+|-.| +.+|.+.
T Consensus 182 inV~civs~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 182 INVRCIVSEEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred ceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence 457888877789988888777 7777664
No 454
>PHA02713 hypothetical protein; Provisional
Probab=89.02 E-value=10 Score=31.35 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=15.6
Q ss_pred CCCEEEEEcCCC-----cEEEEECCCCc
Q 043942 25 DGQLLASGGFHG-----LVQNRDTSSRN 47 (216)
Q Consensus 25 ~~~~l~s~~~d~-----~v~vwd~~~~~ 47 (216)
+|+..+.||.++ .+..||..+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 456677777653 37788887654
No 455
>PRK13684 Ycf48-like protein; Provisional
Probab=88.07 E-value=10 Score=29.01 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEE-EeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSI-WNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG 161 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 161 (216)
..+..+.+.|++.+++++. .|.+.. +|-. ++.-..... .....++.+.+.++++.++++. .|
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~--------------~~~~~l~~i~~~~~g~~~~vg~-~G 235 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQR--------------NSSRRLQSMGFQPDGNLWMLAR-GG 235 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeC--------------CCcccceeeeEcCCCCEEEEec-CC
Confidence 4577888888877666654 344332 2211 221111111 0345677888888777655432 23
Q ss_pred eE-----------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 162 KV-----------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 162 ~i-----------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
.+ .. ....+.++.+.|+++.++ ++.+|.+..
T Consensus 236 ~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~ 284 (334)
T PRK13684 236 QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV 284 (334)
T ss_pred EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE
Confidence 33 10 113467888988877555 445776543
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.81 E-value=12 Score=29.49 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=56.4
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-----eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-----FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
...++.+.+.+++..++++ .+|.+.. ....++. ....... .....+..+.|.+++..+++
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~-------------~~~~~l~~v~~~~d~~~~a~ 344 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIK-------------SRGFGILDVGYRSKKEAWAA 344 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccC-------------CCCcceEEEEEcCCCcEEEE
Confidence 4568899999998888766 4555443 3333431 1222110 02235788888887776555
Q ss_pred ecccCeE-----------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 157 GCVDGKV-----------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 157 ~~~~~~i-----------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
| ..|.+ . .-....+.+.|.++++.++++ .+|.|.-|
T Consensus 345 G-~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 345 G-GSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred E-CCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 4 45544 1 113467889987777766655 57776544
No 457
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=87.56 E-value=1.7 Score=19.46 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=17.0
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 170 IQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 170 i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
..+++++++|+.+++-+....|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4667777777777776666666553
No 458
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.47 E-value=1.8 Score=19.84 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEecCCCeEEEEeCCCCceeEE
Q 043942 96 TICTGSDNATLSIWNPKGGENFHA 119 (216)
Q Consensus 96 ~l~t~~~d~~i~~wd~~~~~~~~~ 119 (216)
.++.++.++.+..+|.++|+.+-.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788899999999999887654
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.86 E-value=5.9 Score=31.43 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=57.8
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
.+++|.++.||+|.+.||.--.|.+|.+.+....+.. -....+.+..+..|....|..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~----------------------l~~~~~ck~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ----------------------LEYTQECKTKNANILGFCWTS 122 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchh----------------------hHHHHHhccCcceeEEEEEec
Confidence 4568889999999888888777776666655321110 011122333344577888876
Q ss_pred CCcEEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 93 DGKTICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
+ .-+|.-...| +-+|.....+ .+...+. +...|+-..|.++.+.+..+
T Consensus 123 s-~e~A~i~~~G-~e~y~v~pekrslRlVks---------------~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 123 S-TEIAFITDQG-IEFYQVLPEKRSLRLVKS---------------HNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred C-eeEEEEecCC-eEEEEEchhhhhhhhhhh---------------cccCccEEEEccccceEeee
Confidence 5 3444443333 5555544322 2222332 55566666666666654433
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.62 E-value=16 Score=32.94 Aligned_cols=128 Identities=16% Similarity=0.189 Sum_probs=67.4
Q ss_pred cCCCcEEEEECCCCceEEEEeCCCCcc------------------------cCcEEEEEECC----Ccce-----eeeee
Q 043942 33 GFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------EDSTVWMWNAD----RGAY-----LNMFS 79 (216)
Q Consensus 33 ~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------~~~~v~i~d~~----~~~~-----~~~~~ 79 (216)
+.|..+.+|+.+++.....+.+-...+ ..-.|.++-+. ++.. ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 357889999999976666555433322 22233333221 1100 01122
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC----CC---ceeEEeec--cccc-ccccceEEEeeeecCeEEEEeCC
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK----GG---ENFHAIRR--SSLE-FSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~----~~---~~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
...-.|.|+....+|+.+++|- || .+|.+. ++ +.-..+.. .... ..+........+.++|..+..+.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 2345688888777888777764 44 455442 11 11111111 0000 11111111124678999999998
Q ss_pred CCcEEEEecccCeE
Q 043942 150 TSKYLVTGCVDGKV 163 (216)
Q Consensus 150 ~~~~l~~~~~~~~i 163 (216)
..+.+.+-++.|.+
T Consensus 253 SR~IlY~lsek~~v 266 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTV 266 (1311)
T ss_pred ccceeeeeccCceE
Confidence 88888888877776
No 461
>PHA02790 Kelch-like protein; Provisional
Probab=86.51 E-value=16 Score=29.59 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=15.7
Q ss_pred CCcEEEEecCCC---eEEEEeCCCCce
Q 043942 93 DGKTICTGSDNA---TLSIWNPKGGEN 116 (216)
Q Consensus 93 ~~~~l~t~~~d~---~i~~wd~~~~~~ 116 (216)
+++..+.|+.++ .+..||.++.+-
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W 388 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQW 388 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEE
Confidence 577777777543 466788776543
No 462
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.42 E-value=6.8 Score=32.06 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=41.1
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+.+.-+|+.+++..-..+.......+. ..-.+..++.++.||.++.+|.++|+.+-.+..
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457788888887776554222111121 112455777888899999999999999988765
No 463
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=85.72 E-value=3.9 Score=21.91 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=25.8
Q ss_pred eEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTA 191 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v 191 (216)
..+++..|||+++++|..... .......-+.+.+||.+=-+-+.+|.+
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~--~~~~~~~l~Rln~DGsLDttFg~~G~v 50 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNS--SGNNDFVLARLNADGSLDTTFGTGGKV 50 (55)
T ss_pred eEEEEECCCCcEEEEEEeecC--CCcccEEEEEECCCCCccCCcCCCcEE
Confidence 456777778887777754321 122233445566666544444445544
No 464
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=84.88 E-value=16 Score=28.29 Aligned_cols=19 Identities=16% Similarity=0.129 Sum_probs=14.1
Q ss_pred CCeeEEEEcCCCcEEEEec
Q 043942 83 SGLTCGDFTTDGKTICTGS 101 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~ 101 (216)
.....++|.|||.+.++-+
T Consensus 124 ~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred ccccCceECCCCCEEEecc
Confidence 4477899999998766544
No 465
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=84.36 E-value=6.5 Score=23.32 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=33.7
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK 112 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~ 112 (216)
.-+.|..||..+-+. ... --...+.|.++|++++|..++ ..+.|+++..+
T Consensus 34 ~~~~Vvyyd~~~~~~--va~-g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 34 PWGNVVYYDGKEVKV--VAS-GFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEEeCCEeEE--eec-cCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 456777888654222 222 224467899999999887665 67889998765
No 466
>PHA03098 kelch-like protein; Provisional
Probab=84.17 E-value=20 Score=29.29 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=15.2
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCc
Q 043942 25 DGQLLASGGFH-----GLVQNRDTSSRN 47 (216)
Q Consensus 25 ~~~~l~s~~~d-----~~v~vwd~~~~~ 47 (216)
+++.++.||.+ ..+..||..+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 56677777765 346778877654
No 467
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.85 E-value=22 Score=28.95 Aligned_cols=118 Identities=14% Similarity=0.241 Sum_probs=71.9
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-------EEEEecCCCeEEEEeCCC-CceeEEeecccccccccce
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-------TICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYW 132 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~ 132 (216)
...++--|++.|+.+..+.-|... -+.|.|..+ .-+.|-.+..|.-.|.+- |..+....
T Consensus 489 ~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e----------- 555 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE----------- 555 (776)
T ss_pred cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-----------
Confidence 334455566777777777766553 577777432 233444555566666653 32222221
Q ss_pred EEEeeeecCeEEEEeCC----CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEE
Q 043942 133 MICTSLYDGVTCLSWPG----TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVF 194 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~----~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw 194 (216)
..+.++.-.|+. ...++++++..|.| .+....|..+..+.+|+++++.+ ...+.+-
T Consensus 556 -----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~ 629 (776)
T COG5167 556 -----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLT 629 (776)
T ss_pred -----ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEE
Confidence 223333333432 44689999999887 55667899999999999876554 4567777
Q ss_pred Ecc
Q 043942 195 EIA 197 (216)
Q Consensus 195 ~~~ 197 (216)
|++
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 764
No 468
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.26 E-value=28 Score=29.70 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=60.7
Q ss_pred CcEEEEecCCCeEEEEeCCCCceeEE------eec-ccccccccceEEEeeeecCeEEEEeCC--CCcEEEEecccCeE-
Q 043942 94 GKTICTGSDNATLSIWNPKGGENFHA------IRR-SSLEFSLNYWMICTSLYDGVTCLSWPG--TSKYLVTGCVDGKV- 163 (216)
Q Consensus 94 ~~~l~t~~~d~~i~~wd~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~i- 163 (216)
.+++++|. .+.|.||+++.-..... +.. ...................|+.+.... +...|+.+.+||.+
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666654 67899999875433211 111 111000111010001334466665543 45678888999988
Q ss_pred --------------------------------EeeeCCEEEEEEe--cCCCeEEEEeCCCcEEEEEccc
Q 043942 164 --------------------------------DGHIDAIQSLSVS--AIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 164 --------------------------------~~~~~~i~~~~~~--~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.......++++++ ...++||+++....|.||-+..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 1112467889988 7788889888888888887665
No 469
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.95 E-value=7.8 Score=23.16 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=20.8
Q ss_pred CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 102 DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 102 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
.+|.+.-||..+++...... .-.-.+.+++++|+.+++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~----------------~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLD----------------GLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEE----------------EESSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehh----------------CCCccCeEEEcCCCCEEEEE
Confidence 45667777777665433333 22345666666666655543
No 470
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.83 E-value=23 Score=28.45 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=27.1
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR 46 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 46 (216)
.+-..-...+.|+|.|||++|++--..|.|++++..++
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34444566789999999988877655688888775443
No 471
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.40 E-value=8.3 Score=23.05 Aligned_cols=40 Identities=5% Similarity=0.023 Sum_probs=28.3
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG 100 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~ 100 (216)
..|.+.-||+.+++....+.+- .-.+.+++++|+.+++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence 6889999999988765445443 457899999999977665
No 472
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=81.89 E-value=18 Score=26.50 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.++.|+.|+.+| +.+++........... ....|..+..-|+-+.+++-++ +.+
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----------------~~~~I~ql~vl~~~~~llvLsd-~~l 58 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL----------------KLSSITQLSVLPELNLLLVLSD-GQL 58 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe----------------ecceEEEEEEecccCEEEEEcC-Ccc
Confidence 578899998888 9999983333222222 2334777777776665555443 444
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.62 E-value=23 Score=27.66 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=82.3
Q ss_pred cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Ccc---------------------c--CcEEEEEECC--Ccceeee
Q 043942 24 TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GGI---------------------E--DSTVWMWNAD--RGAYLNM 77 (216)
Q Consensus 24 ~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~---------------------~--~~~v~i~d~~--~~~~~~~ 77 (216)
|...+++...+++-+.+||+...+. +.+.... ..+ . ..+|++|.+. ++. +..
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~l-q~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~ 143 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKEL-QSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD 143 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EE-EEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEE-EeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence 3456888888899999999975433 3332111 100 2 2578888765 332 222
Q ss_pred eec-------cCCCeeEEEE--cC-CCc-EEEEecCCCeEEEEeCC---CC----ceeEEeecccccccccceEEEeeee
Q 043942 78 FSG-------HGSGLTCGDF--TT-DGK-TICTGSDNATLSIWNPK---GG----ENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 78 ~~~-------~~~~v~~~~~--~~-~~~-~l~t~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
+.. ....+..+++ +| +|. +++....+|.+..|.+. ++ +.++.|.. .
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----------------~ 207 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----------------G 207 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----------------S
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----------------C
Confidence 221 1123566665 33 454 55567788988888775 22 23444442 3
Q ss_pred cCeEEEEeCCCCcEEEEecccCeE---------------------EeeeCCEEEEEEe--cCC-CeEEEEeC-CCcEEEE
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSVS--AIR-ESLVSVSV-DGTARVF 194 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~~i---------------------~~~~~~i~~~~~~--~~~-~~l~s~~~-d~~v~vw 194 (216)
..+..+........|+.+-++.-| ......|..+++- +++ .||+.+++ +++..||
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence 345555555555555555554444 1123456666663 343 36665554 7889999
Q ss_pred Eccc
Q 043942 195 EIAE 198 (216)
Q Consensus 195 ~~~~ 198 (216)
+.+.
T Consensus 288 ~r~~ 291 (381)
T PF02333_consen 288 DREG 291 (381)
T ss_dssp ESST
T ss_pred ecCC
Confidence 9765
No 474
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=81.48 E-value=12 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=24.9
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEEeCCCCc
Q 043942 28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGG 58 (216)
Q Consensus 28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 58 (216)
+.+....||.|.+++..+++.+..+....++
T Consensus 43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~G 73 (135)
T TIGR03054 43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNG 73 (135)
T ss_pred EEEecCCCCeEEEEECCCCCEEEEecCCCCc
Confidence 4556678999999999999999999766554
No 475
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=81.19 E-value=7.9 Score=33.26 Aligned_cols=38 Identities=0% Similarity=-0.031 Sum_probs=31.0
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI 120 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~ 120 (216)
+.|.++....-+..++.+-.||+|.++|-.+.+.+...
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence 45777777777888999999999999999988766555
No 476
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.48 E-value=22 Score=26.74 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=24.5
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE 53 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 53 (216)
|+++...++|++|+|+-.-..|.+.|..+++.+..+.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC
Confidence 6677777778888887766666666666655544443
No 477
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.44 E-value=13 Score=24.13 Aligned_cols=99 Identities=14% Similarity=0.187 Sum_probs=0.0
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECC--------CcceeeeeeccCCCeeEE
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNAD--------RGAYLNMFSGHGSGLTCG 88 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~--------~~~~~~~~~~~~~~v~~~ 88 (216)
|..-.|......|+.++ ..++|.|++.. ....+..+. -...|+++
T Consensus 1 VaiGkfDG~~pcL~~aT--------------------------~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~ital 53 (136)
T PF14781_consen 1 VAIGKFDGVHPCLACAT--------------------------TGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITAL 53 (136)
T ss_pred CeEEEeCCCceeEEEEe--------------------------cCCEEEEECCCccccccccccCceeEEE-CCCceEEE
Q ss_pred EEcC----CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe----CCCCcEEEEec
Q 043942 89 DFTT----DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW----PGTSKYLVTGC 158 (216)
Q Consensus 89 ~~~~----~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l~~~~ 158 (216)
+-.+ +++-++.-+....+..||+.+...+.-.. -.+.++++.+ ......+++|+
T Consensus 54 aaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke----------------~~DGvn~i~~g~~~~~~~~l~ivGG 115 (136)
T PF14781_consen 54 AAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKE----------------VPDGVNAIVIGKLGDIPSPLVIVGG 115 (136)
T ss_pred EEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhh----------------CccceeEEEEEecCCCCCcEEEECc
No 478
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=79.89 E-value=4.3 Score=18.15 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=19.5
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEE
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRD 42 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd 42 (216)
..|.+++..+ .+++.+...+.+|+|.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 3577777765 5888888888888873
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.88 E-value=40 Score=29.26 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=62.5
Q ss_pred CCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCcee--EEeec-----ccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 83 SGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENF--HAIRR-----SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 83 ~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
.+...++|+| +.+.+|.....|...|||+...... ..+.. ..+..+.. ..+.-..+.|.++.+.|
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~-------e~s~w~rI~W~~~~~~l 218 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPE-------ELSNWKRILWVSDSNRL 218 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCc-------ccCcceeeEecCCCCEE
Confidence 3567899999 5678999999999999999221111 11110 01100111 22445678888888888
Q ss_pred EEecccCeE---------------EeeeCCEEEEEEecC--CCeEEEEeCCCcEEEEEccc
Q 043942 155 VTGCVDGKV---------------DGHIDAIQSLSVSAI--RESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 155 ~~~~~~~~i---------------~~~~~~i~~~~~~~~--~~~l~s~~~d~~v~vw~~~~ 198 (216)
++++..... .....+|.++.-+|. +..++-. ...|...++..
T Consensus 219 Lv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 219 LVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred EEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 777766554 122356777777776 2333322 24566666655
No 480
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=78.66 E-value=5.9 Score=19.06 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=19.0
Q ss_pred EEEEcCCCcEEEEECCCCceEEEEeC
Q 043942 29 LASGGFHGLVQNRDTSSRNLQCTVEG 54 (216)
Q Consensus 29 l~s~~~d~~v~vwd~~~~~~~~~~~~ 54 (216)
+..++.+|.+...|..+|+.+-.++.
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 45558888888888888887666543
No 481
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=78.51 E-value=56 Score=30.19 Aligned_cols=187 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCCCceeEEeeccccceEEEEEccCCC----EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQ----LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------- 59 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~----~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------- 59 (216)
+.+-..++.+-......+-+.++.... ++|..--||++.+=|..+.+..+.-.......
T Consensus 380 VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~ 459 (1899)
T KOG4659|consen 380 VGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPA 459 (1899)
T ss_pred EccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCcccc
Q ss_pred ------------------------cCcEEEEEECCCcce--------------------------eeeeeccCCCeeEEE
Q 043942 60 ------------------------EDSTVWMWNADRGAY--------------------------LNMFSGHGSGLTCGD 89 (216)
Q Consensus 60 ------------------------~~~~v~i~d~~~~~~--------------------------~~~~~~~~~~v~~~~ 89 (216)
.+|.+++-|-..-+. .....-|-...++++
T Consensus 460 desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~La 539 (1899)
T KOG4659|consen 460 DESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLA 539 (1899)
T ss_pred ccccCcchhcccceeccCCceeEccCCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeeccccee
Q ss_pred EcC--------CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942 90 FTT--------DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG 161 (216)
Q Consensus 90 ~~~--------~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 161 (216)
.+| |.+.++=-+.++.|+ +-.|.+.+.-......... ....-..+..+ .+++++++|.+.++-++..
T Consensus 540 V~Pmdnsl~Vld~nvvlrit~~~rV~---Ii~GrP~hC~~a~~t~~~s-kla~H~tl~~~-r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 540 VDPMDNSLLVLDTNVVLRITVVHRVR---IILGRPTHCDLANATSSAS-KLADHRTLLIQ-RDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred ecCCCCeEEEeecceEEEEccCccEE---EEcCCccccccCCCchhhh-hhhhhhhhhhh-hceeecCCceEEEEeccch
Q ss_pred eE-----------------------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEE
Q 043942 162 KV-----------------------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTAR 192 (216)
Q Consensus 162 ~i-----------------------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~ 192 (216)
.+ .++-..+.+++.+|||...++-...-.|+
T Consensus 615 riNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr 686 (1899)
T KOG4659|consen 615 RINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIR 686 (1899)
T ss_pred hhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhh
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=76.57 E-value=56 Score=29.22 Aligned_cols=132 Identities=10% Similarity=0.118 Sum_probs=69.4
Q ss_pred cCcEEEEEECC-CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc----c-cc-ccce
Q 043942 60 EDSTVWMWNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL----E-FS-LNYW 132 (216)
Q Consensus 60 ~~~~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~----~-~~-~~~~ 132 (216)
.++.++.|++- .++.+.-+....-.-.-.+..|...++++| ....+++||+...+.+.......+ . .. ....
T Consensus 910 ~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~R 988 (1205)
T KOG1898|consen 910 SSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGAR 988 (1205)
T ss_pred CCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceE
Confidence 56667777754 344332222111112235667766666554 456899999987765543332111 0 01 1122
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.........|.-+.|.|+++.|..-..|- ....|+.+.+ -|...++.+..=|++.+-.+.
T Consensus 989 I~VgD~qeSV~~~~y~~~~n~l~~fadD~----~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 989 IVVGDIQESVHFVRYRREDNQLIVFADDP----VPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeeccceEEEEEEecCCCeEEEEeCCC----ccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence 22334556677777777777666544442 2345666555 344456666555666665443
No 483
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=76.50 E-value=12 Score=31.16 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCC-cEEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHG-LVQNRD 42 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~-~v~vwd 42 (216)
+...+..+++|..++..++|.+.+..+++++-.| .|.++.
T Consensus 304 S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfR 344 (788)
T KOG2109|consen 304 SFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFR 344 (788)
T ss_pred chhhhhheeeecCcccccccccCceEEEEEeeccceeeeEE
Confidence 3455678999999999999999999999988665 344444
No 484
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.49 E-value=28 Score=25.25 Aligned_cols=33 Identities=18% Similarity=0.066 Sum_probs=28.1
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
..++|...|+.+|+.+.++.-....+++.+|--
T Consensus 231 ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 231 NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred cCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 567788888889999988888889999999963
No 485
>PRK13614 lipoprotein LpqB; Provisional
Probab=74.41 E-value=50 Score=27.56 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=26.4
Q ss_pred cCcEEEEEECCCcceeeeeeccCC-CeeEEEEcCCCcEEEEecCCC
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGS-GLTCGDFTTDGKTICTGSDNA 104 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~t~~~d~ 104 (216)
.++.+...+-..-.++.-..+... .+...+.++++..++....++
T Consensus 319 ~~G~l~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~ 364 (573)
T PRK13614 319 SDGELVRYENGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSR 364 (573)
T ss_pred cCCeEEEecCCCcccCCCccCcCcccccceeecCCCceEEEecCCC
Confidence 344444433222233333333333 677889999999988877766
No 486
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=73.36 E-value=30 Score=24.58 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=20.7
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEec
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGS 101 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~ 101 (216)
++..++. .-+.|..+.++..|++++|--
T Consensus 51 ~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 51 PLLCTFS-TVGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceeEEEc-chhheeEEEeccccceEEEEE
Confidence 3444554 337789999999999999864
No 487
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=73.33 E-value=36 Score=25.86 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
.++|+.+++.+..=-.... +-.|+ +|++.++=+..|.+..+|.++|+...... -.+....
T Consensus 188 ~vidv~s~evl~~GLsmPh---SPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~----------------vpG~~rG 247 (335)
T TIGR03032 188 CVIDIPSGEVVASGLSMPH---SPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAF----------------LPGFTRG 247 (335)
T ss_pred EEEEeCCCCEEEcCccCCc---CCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEE----------------CCCCCcc
Q ss_pred EEeCCCCcEEEEe
Q 043942 145 LSWPGTSKYLVTG 157 (216)
Q Consensus 145 ~~~~~~~~~l~~~ 157 (216)
+.|. |.+++++
T Consensus 248 L~f~--G~llvVg 258 (335)
T TIGR03032 248 LAFA--GDFAFVG 258 (335)
T ss_pred ccee--CCEEEEE
No 488
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=73.15 E-value=39 Score=25.76 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=40.2
Q ss_pred EEEEEccCCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEc
Q 043942 18 SSLAFSTDGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFT 91 (216)
Q Consensus 18 ~~~~~s~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~ 91 (216)
-++++.++|.++++.-.+ ..|+.++.. ++....+..+..-. .... .. .-...+....+++++
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~---------~~~~-~~-~~~~~N~G~E~la~~ 155 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFL---------PDAN-GT-SGRRNNRGFEGLAVS 155 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccc---------cccC-cc-ccccCCCCeEEEEEC
Confidence 367776777777776666 667666655 55444443222100 0000 00 111245678899999
Q ss_pred CCCcEEEEec
Q 043942 92 TDGKTICTGS 101 (216)
Q Consensus 92 ~~~~~l~t~~ 101 (216)
|+|+.|+++.
T Consensus 156 ~dG~~l~~~~ 165 (326)
T PF13449_consen 156 PDGRTLFAAM 165 (326)
T ss_pred CCCCEEEEEE
Confidence 9999666553
No 489
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=72.45 E-value=58 Score=27.47 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=19.6
Q ss_pred eeccccceEEEEEccCCCEEEEEcCC
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFH 35 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d 35 (216)
...+...+..+.|+|+|..++..+.+
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~ 80 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTD 80 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEecc
Confidence 33466778888999999988887733
No 490
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=72.17 E-value=38 Score=25.27 Aligned_cols=167 Identities=11% Similarity=0.091 Sum_probs=87.6
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc---c---cCcE---------EEEEECCCcceee-ee-
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---I---EDST---------VWMWNADRGAYLN-MF- 78 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---~---~~~~---------v~i~d~~~~~~~~-~~- 78 (216)
.-..++-+|||..-.++...+.|--.|..+++....--+.... + .|+. |.-.|.++..... .+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecc
Confidence 4567788889988888887777777777777655433221111 1 2332 3333333322211 11
Q ss_pred -eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 79 -SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 79 -~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
+.-........|.+.|++..|+.. |.---.|..+ ..+..+... .....+.++..|+|+.-++.
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaP--------------qG~gpyGi~atpdGsvwyas 206 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAP--------------QGGGPYGICATPDGSVWYAS 206 (353)
T ss_pred cccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccC--------------CCCCCcceEECCCCcEEEEe
Confidence 112345778889999988888752 1111111111 112222221 23445677778888876665
Q ss_pred cccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 158 CVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 158 ~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
-.+..| ......-..+--+|.|+.-+|....+.++.+|...
T Consensus 207 lagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 207 LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 555444 11122234444566676666655566666666554
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=72.07 E-value=18 Score=21.46 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=21.3
Q ss_pred cceEEEEEccCCCEEEEEc-CCCcEEEEECC
Q 043942 15 DSFSSLAFSTDGQLLASGG-FHGLVQNRDTS 44 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~ 44 (216)
...+.+.++|++++|..++ ..+.|++|...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4567889999988877665 45667777643
No 492
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=71.41 E-value=38 Score=29.73 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=39.8
Q ss_pred cEEEEEECCCcceeee-eeccCCCeeEEEEcCCCcEEEE-ecCCC-----eEEEEeCCCC-ceeEEeec
Q 043942 62 STVWMWNADRGAYLNM-FSGHGSGLTCGDFTTDGKTICT-GSDNA-----TLSIWNPKGG-ENFHAIRR 122 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~t-~~~d~-----~i~~wd~~~~-~~~~~~~~ 122 (216)
+.+.+-|.....+... ++ +...|.+-+|+|||+.|+- .+..+ .|++-|+++. ..+..++.
T Consensus 329 ~~L~~~D~dG~n~~~ve~~-~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIE-DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred CeEEEEecCCCCceEEEec-CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 4777777765554433 33 6778999999999999987 44333 4888888753 33344443
No 493
>PHA02790 Kelch-like protein; Provisional
Probab=71.10 E-value=54 Score=26.61 Aligned_cols=89 Identities=9% Similarity=0.001 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCC---cEEEEECCCCceEEEEeCC------CCcc-------cCcEEEEEECCCccee--eeeeccCCCee
Q 043942 25 DGQLLASGGFHG---LVQNRDTSSRNLQCTVEGP------RGGI-------EDSTVWMWNADRGAYL--NMFSGHGSGLT 86 (216)
Q Consensus 25 ~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~------~~~~-------~~~~v~i~d~~~~~~~--~~~~~~~~~v~ 86 (216)
+|+..+.|+.++ .+..||..+.+....-..+ .... -.|.+.+||.++.+-. ..+.......
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~e~ydp~~~~W~~~~~m~~~r~~~- 440 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEFYCESSNTWTLIDDPIYPRDNP- 440 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCceEEecCCCCcEeEcCCCCCCcccc-
Confidence 566667776543 4667887765433211111 0111 2344566777654322 2222111112
Q ss_pred EEEEcCCCcEEEEecCC-----CeEEEEeCCCCc
Q 043942 87 CGDFTTDGKTICTGSDN-----ATLSIWNPKGGE 115 (216)
Q Consensus 87 ~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~ 115 (216)
+++. -+++..+.|+.+ ..+..||..+++
T Consensus 441 ~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 441 ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEE-ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 2222 256777777754 345566655443
No 494
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.62 E-value=11 Score=18.27 Aligned_cols=21 Identities=14% Similarity=0.329 Sum_probs=15.8
Q ss_pred CCcEEEEecCCCeEEEEeCCC
Q 043942 93 DGKTICTGSDNATLSIWNPKG 113 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~ 113 (216)
.+..+..++.|+.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788888999999999764
No 495
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.04 E-value=53 Score=25.99 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=35.1
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE-----Ee---------------eeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV-----DG---------------HIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-----~~---------------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
....+..+.+.+++..++++.. |.+ .+ ....+.++.|.++++.+++ +..|.+....
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~ 354 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRG-GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST 354 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCC-ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC
Confidence 3456788888888887766533 333 00 0123788888887776554 4677766643
No 496
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=69.65 E-value=10 Score=32.93 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=22.0
Q ss_pred eCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 167 IDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 167 ~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.-.|.++.-+.+|+.+++|-.| +.+|.+.
T Consensus 181 GinV~civs~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 181 GINVRCIVSEEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred CceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence 3567888888889999888777 6667653
No 497
>PRK13615 lipoprotein LpqB; Provisional
Probab=69.28 E-value=66 Score=26.79 Aligned_cols=27 Identities=11% Similarity=0.267 Sum_probs=22.4
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
.+++.++++..++....++.+.++...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~ 363 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD 363 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC
Confidence 678999999999888878888887655
No 498
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification]
Probab=68.70 E-value=84 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=18.9
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEc
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGG 33 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 33 (216)
+++...-| ..+..+++++.+++++.|+
T Consensus 901 p~k~~~~~-Ktlqklvyh~~~~~~~Vgs 927 (1319)
T COG5161 901 PVKRTPKH-KTLQKLVYHCAGRYMVVGS 927 (1319)
T ss_pred ceeecccc-ccccceeeeccceEEEEEe
Confidence 34444445 4677888899888888775
No 499
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=68.33 E-value=30 Score=30.29 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=28.0
Q ss_pred eEEe-eccccceEEEEEccCCCEEEE-EcCCC-----cEEEEECCC
Q 043942 7 ASEI-LGHKDSFSSLAFSTDGQLLAS-GGFHG-----LVQNRDTSS 45 (216)
Q Consensus 7 ~~~~-~~h~~~v~~~~~s~~~~~l~s-~~~d~-----~v~vwd~~~ 45 (216)
.+.+ ..+..+|..-+|||||+.||- .+.++ .|++-|+.+
T Consensus 341 ~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 341 SRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred ceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 3334 346788999999999999997 45444 477777765
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=67.59 E-value=15 Score=31.35 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=28.8
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN 116 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 116 (216)
...++++.-+|.+..++.++.||.|.+|+......
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 34567888889999999999999999999875543
Done!