Query 043942
Match_columns 216
No_of_seqs 363 out of 1266
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 16:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 4.6E-38 1.6E-42 231.9 28.3 206 4-209 3-270 (304)
2 1got_B GT-beta; complex (GTP-b 100.0 2.1E-36 7.3E-41 226.2 27.9 194 5-213 46-316 (340)
3 1vyh_C Platelet-activating fac 100.0 1.1E-36 3.9E-41 233.0 26.3 197 1-212 137-383 (410)
4 3ow8_A WD repeat-containing pr 100.0 3.1E-36 1.1E-40 223.7 27.8 192 6-212 72-293 (321)
5 4gqb_B Methylosome protein 50; 100.0 1.3E-36 4.6E-41 227.5 24.8 178 10-202 123-335 (344)
6 1vyh_C Platelet-activating fac 100.0 8.6E-36 2.9E-40 228.2 25.8 189 7-210 101-339 (410)
7 3ow8_A WD repeat-containing pr 100.0 1.3E-35 4.6E-40 220.3 25.6 182 1-197 109-320 (321)
8 2pbi_B Guanine nucleotide-bind 100.0 6.8E-35 2.3E-39 219.2 28.8 194 5-213 55-330 (354)
9 4ery_A WD repeat-containing pr 100.0 6.2E-35 2.1E-39 215.6 27.9 188 4-206 13-231 (312)
10 3frx_A Guanine nucleotide-bind 100.0 2.8E-35 9.6E-40 218.4 25.4 180 4-199 55-318 (319)
11 4aow_A Guanine nucleotide-bind 100.0 4.4E-35 1.5E-39 218.3 25.9 182 3-201 27-340 (340)
12 3iz6_a 40S ribosomal protein R 100.0 2.5E-35 8.5E-40 223.6 23.4 190 4-201 56-378 (380)
13 3frx_A Guanine nucleotide-bind 100.0 1.8E-34 6E-39 214.1 25.6 186 5-206 8-235 (319)
14 2pbi_B Guanine nucleotide-bind 100.0 2.9E-34 9.9E-39 215.8 25.5 177 6-195 146-354 (354)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-34 4.4E-39 217.0 23.4 181 3-198 4-225 (345)
16 1got_B GT-beta; complex (GTP-b 100.0 5.6E-34 1.9E-38 213.1 25.7 177 5-195 134-340 (340)
17 4g56_B MGC81050 protein; prote 100.0 1.1E-34 3.7E-39 218.4 21.8 178 10-202 135-347 (357)
18 2xzm_R RACK1; ribosome, transl 100.0 1.4E-33 4.8E-38 211.2 27.1 181 5-198 12-244 (343)
19 1erj_A Transcriptional repress 100.0 2.4E-33 8E-38 213.6 28.5 187 16-211 125-354 (393)
20 2hes_X YDR267CP; beta-propelle 100.0 4.8E-33 1.6E-37 207.3 26.8 182 1-199 1-231 (330)
21 4gqb_B Methylosome protein 50; 100.0 4.5E-33 1.5E-37 208.4 25.5 185 12-211 80-301 (344)
22 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-33 6.1E-38 210.8 21.5 202 5-206 96-343 (345)
23 2pm7_B Protein transport prote 100.0 6.8E-33 2.3E-37 203.6 24.2 178 7-199 2-239 (297)
24 1erj_A Transcriptional repress 100.0 9.9E-33 3.4E-37 210.1 25.5 197 1-200 152-391 (393)
25 4ery_A WD repeat-containing pr 100.0 3.4E-32 1.2E-36 201.0 27.5 197 2-212 53-282 (312)
26 1nr0_A Actin interacting prote 100.0 1E-32 3.6E-37 220.8 25.9 187 2-205 47-277 (611)
27 2ymu_A WD-40 repeat protein; u 100.0 2.5E-32 8.7E-37 216.8 25.9 175 3-195 374-577 (577)
28 2pm7_B Protein transport prote 100.0 3.1E-32 1.1E-36 200.1 24.1 180 4-198 43-285 (297)
29 2xzm_R RACK1; ribosome, transl 100.0 8.7E-32 3E-36 201.4 25.7 179 4-199 66-286 (343)
30 3f3f_A Nucleoporin SEH1; struc 100.0 7.2E-32 2.5E-36 200.8 24.1 197 7-203 4-342 (351)
31 3jrp_A Fusion protein of prote 100.0 6E-32 2E-36 203.9 23.1 182 4-200 1-242 (379)
32 4gga_A P55CDC, cell division c 100.0 2.8E-31 9.4E-36 203.8 25.0 185 2-202 133-399 (420)
33 3ei3_B DNA damage-binding prot 100.0 6.5E-31 2.2E-35 199.2 26.7 186 3-205 62-289 (383)
34 3dm0_A Maltose-binding peripla 100.0 4.3E-31 1.5E-35 214.3 27.3 190 6-207 374-601 (694)
35 3bg1_A Protein SEC13 homolog; 100.0 1.4E-32 4.9E-37 203.5 16.9 176 8-198 7-247 (316)
36 1gxr_A ESG1, transducin-like e 100.0 1.3E-30 4.5E-35 193.7 27.2 177 12-204 95-302 (337)
37 4g56_B MGC81050 protein; prote 100.0 1.1E-31 3.9E-36 201.9 21.4 188 10-212 38-272 (357)
38 2ymu_A WD-40 repeat protein; u 100.0 1.3E-30 4.3E-35 207.1 28.4 190 4-212 334-552 (577)
39 2hes_X YDR267CP; beta-propelle 100.0 1E-30 3.5E-35 194.7 25.3 179 6-200 48-282 (330)
40 4e54_B DNA damage-binding prot 100.0 1.6E-31 5.3E-36 206.0 21.1 185 5-205 110-334 (435)
41 3zwl_B Eukaryotic translation 100.0 2.9E-30 9.9E-35 193.9 27.3 186 1-202 61-350 (369)
42 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-30 3.8E-35 214.8 27.0 205 4-208 3-269 (814)
43 1r5m_A SIR4-interacting protei 100.0 1.3E-30 4.3E-35 199.3 25.2 182 3-200 138-363 (425)
44 1nr0_A Actin interacting prote 100.0 2E-30 6.8E-35 207.6 26.8 188 3-204 136-361 (611)
45 3zwl_B Eukaryotic translation 100.0 4.2E-30 1.4E-34 193.0 27.0 195 6-205 24-256 (369)
46 3bg1_A Protein SEC13 homolog; 100.0 2.7E-31 9.4E-36 196.7 20.2 178 6-198 49-293 (316)
47 3dwl_C Actin-related protein 2 100.0 2.1E-32 7.3E-37 206.8 14.5 187 9-209 6-251 (377)
48 2aq5_A Coronin-1A; WD40 repeat 100.0 7.4E-31 2.5E-35 200.2 22.7 181 6-201 73-302 (402)
49 4a11_B DNA excision repair pro 100.0 8.1E-31 2.8E-35 199.5 22.4 202 3-204 32-371 (408)
50 4ggc_A P55CDC, cell division c 100.0 3.5E-30 1.2E-34 190.1 25.1 184 1-200 52-317 (318)
51 4aez_A CDC20, WD repeat-contai 100.0 4.2E-30 1.4E-34 196.1 26.2 186 2-202 121-340 (401)
52 3dm0_A Maltose-binding peripla 100.0 1.4E-30 4.8E-35 211.3 24.9 179 4-198 420-693 (694)
53 2ynn_A Coatomer subunit beta'; 100.0 2.9E-30 1E-34 190.2 24.3 182 1-198 84-302 (304)
54 4h5i_A Guanine nucleotide-exch 100.0 1.1E-30 3.7E-35 197.1 21.7 171 13-199 132-344 (365)
55 3v7d_B Cell division control p 100.0 1.4E-29 4.8E-34 196.3 27.6 185 1-204 149-427 (464)
56 1gxr_A ESG1, transducin-like e 100.0 2.1E-29 7.3E-34 187.1 27.5 175 6-197 133-336 (337)
57 3vl1_A 26S proteasome regulato 100.0 1.6E-30 5.3E-35 199.1 21.5 183 2-199 127-366 (420)
58 1k8k_C P40, ARP2/3 complex 41 100.0 5.8E-30 2E-34 192.8 24.2 187 9-209 3-244 (372)
59 3jrp_A Fusion protein of prote 100.0 5.5E-30 1.9E-34 193.1 24.1 182 3-199 44-288 (379)
60 3k26_A Polycomb protein EED; W 100.0 4.9E-31 1.7E-35 198.0 18.2 194 1-197 102-365 (366)
61 2j04_B YDR362CP, TAU91; beta p 100.0 5.7E-31 1.9E-35 206.5 18.5 176 8-198 201-428 (524)
62 4aez_A CDC20, WD repeat-contai 100.0 1.1E-29 3.7E-34 193.8 24.7 186 1-204 163-386 (401)
63 3vl1_A 26S proteasome regulato 100.0 8.1E-31 2.8E-35 200.7 18.4 194 7-201 91-325 (420)
64 3mmy_A MRNA export factor; mRN 100.0 2.3E-29 7.8E-34 189.0 24.8 208 4-212 29-318 (368)
65 4e54_B DNA damage-binding prot 100.0 9.5E-31 3.3E-35 201.7 17.1 144 7-163 157-320 (435)
66 3i2n_A WD repeat-containing pr 100.0 5.1E-30 1.8E-34 192.0 20.2 189 2-201 98-356 (357)
67 3dwl_C Actin-related protein 2 100.0 1.5E-30 5.1E-35 196.7 16.9 191 5-197 46-280 (377)
68 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-29 8.3E-34 215.1 24.9 198 2-199 645-914 (1249)
69 3gre_A Serine/threonine-protei 100.0 4.9E-30 1.7E-34 197.5 18.7 189 3-207 51-368 (437)
70 3vu4_A KMHSV2; beta-propeller 100.0 3.7E-29 1.3E-33 188.0 22.6 194 2-200 7-273 (355)
71 3sfz_A APAF-1, apoptotic pepti 100.0 8.4E-29 2.9E-33 211.7 27.3 190 7-211 608-884 (1249)
72 1sq9_A Antiviral protein SKI8; 100.0 3E-29 1E-33 190.6 22.0 188 6-206 54-330 (397)
73 3i2n_A WD repeat-containing pr 100.0 1E-28 3.5E-33 184.9 24.2 182 3-200 53-293 (357)
74 1k8k_C P40, ARP2/3 complex 41 100.0 5.3E-29 1.8E-33 187.5 22.6 177 6-198 44-274 (372)
75 2j04_B YDR362CP, TAU91; beta p 100.0 8E-30 2.7E-34 200.0 18.6 176 7-198 259-517 (524)
76 1sq9_A Antiviral protein SKI8; 100.0 3.4E-29 1.1E-33 190.3 21.4 192 7-200 109-397 (397)
77 4h5i_A Guanine nucleotide-exch 100.0 9.9E-29 3.4E-33 186.4 23.7 200 14-213 14-316 (365)
78 2pm9_A Protein WEB1, protein t 100.0 2.3E-29 7.8E-34 192.3 20.4 189 12-209 65-305 (416)
79 3v7d_B Cell division control p 100.0 1.5E-28 5.1E-33 190.6 25.1 204 6-213 113-356 (464)
80 2xyi_A Probable histone-bindin 100.0 9.3E-29 3.2E-33 190.3 23.6 182 4-200 171-412 (430)
81 3jro_A Fusion protein of prote 100.0 1E-29 3.6E-34 207.8 18.9 179 7-200 2-240 (753)
82 1r5m_A SIR4-interacting protei 100.0 3.4E-28 1.2E-32 185.8 25.9 196 12-209 43-330 (425)
83 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-28 1E-32 179.3 23.8 187 4-211 8-227 (313)
84 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-28 6.2E-33 188.9 23.4 176 2-200 161-367 (435)
85 3dw8_B Serine/threonine-protei 100.0 9.7E-29 3.3E-33 190.5 21.5 186 13-208 27-326 (447)
86 2pm9_A Protein WEB1, protein t 100.0 1.7E-29 5.9E-34 192.9 17.1 183 5-202 104-341 (416)
87 3odt_A Protein DOA1; ubiquitin 100.0 9.4E-28 3.2E-32 176.6 25.3 188 2-209 47-266 (313)
88 1pgu_A Actin interacting prote 100.0 2.5E-28 8.4E-33 194.9 23.6 185 5-207 54-292 (615)
89 2xyi_A Probable histone-bindin 100.0 5.1E-28 1.8E-32 186.2 24.4 176 8-198 122-353 (430)
90 3ei3_B DNA damage-binding prot 100.0 5.9E-28 2E-32 182.9 23.9 186 2-207 104-348 (383)
91 3k26_A Polycomb protein EED; W 100.0 2.3E-28 7.9E-33 183.4 21.5 176 9-201 13-263 (366)
92 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-28 3.7E-33 204.8 21.4 188 10-203 13-247 (902)
93 3dw8_B Serine/threonine-protei 100.0 1.2E-28 4.1E-33 190.0 19.6 193 6-202 73-377 (447)
94 3jro_A Fusion protein of prote 100.0 1.1E-28 3.9E-33 201.6 20.3 183 3-200 42-287 (753)
95 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.2E-27 1.1E-31 182.4 26.6 184 1-207 146-357 (445)
96 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.3E-27 7.9E-32 183.1 25.5 183 6-210 110-320 (445)
97 1yfq_A Cell cycle arrest prote 100.0 9.7E-28 3.3E-32 178.8 22.4 188 7-213 49-298 (342)
98 1p22_A F-BOX/WD-repeat protein 100.0 1.2E-27 4.1E-32 184.3 22.1 180 1-203 200-419 (435)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.3E-27 2.8E-31 180.4 24.8 169 12-196 100-337 (450)
100 4gq1_A NUP37; propeller, trans 100.0 1E-27 3.4E-32 182.6 17.9 190 8-199 130-390 (393)
101 1pgu_A Actin interacting prote 100.0 1.8E-26 6E-31 184.2 24.8 209 2-212 237-587 (615)
102 1yfq_A Cell cycle arrest prote 100.0 4.9E-27 1.7E-31 175.0 18.0 172 8-199 5-226 (342)
103 2aq5_A Coronin-1A; WD40 repeat 100.0 8.8E-27 3E-31 177.7 19.7 181 5-201 122-345 (402)
104 2w18_A PALB2, fancn, partner a 100.0 2.3E-26 8E-31 168.5 20.2 169 16-196 113-355 (356)
105 3mmy_A MRNA export factor; mRN 100.0 1.6E-26 5.5E-31 173.4 19.9 191 4-198 75-346 (368)
106 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-26 4.4E-31 173.4 19.1 170 20-204 42-250 (343)
107 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-25 5.3E-30 184.3 26.4 188 1-203 84-307 (814)
108 1l0q_A Surface layer protein; 99.9 1.2E-24 4.2E-29 165.0 28.9 190 1-208 19-243 (391)
109 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.1E-26 7.1E-31 178.1 19.4 176 14-206 4-279 (450)
110 3vu4_A KMHSV2; beta-propeller 99.9 5.2E-26 1.8E-30 170.9 19.0 182 2-200 89-338 (355)
111 3lrv_A PRE-mRNA-splicing facto 99.9 1.2E-25 4.2E-30 168.1 20.2 183 3-198 113-333 (343)
112 1l0q_A Surface layer protein; 99.9 4.2E-24 1.4E-28 162.1 28.3 188 2-207 62-284 (391)
113 3gre_A Serine/threonine-protei 99.9 1.2E-25 4.2E-30 172.9 19.1 182 13-195 167-437 (437)
114 2j04_A TAU60, YPL007P, hypothe 99.9 6.5E-26 2.2E-30 176.0 16.8 162 12-197 83-296 (588)
115 3bws_A Protein LP49; two-domai 99.9 3.1E-24 1.1E-28 164.8 26.0 188 2-206 152-398 (433)
116 2j04_A TAU60, YPL007P, hypothe 99.9 1E-26 3.5E-31 180.4 12.0 170 12-201 13-214 (588)
117 2oaj_A Protein SNI1; WD40 repe 99.9 2.4E-26 8.2E-31 190.8 14.2 182 8-205 429-671 (902)
118 3iz6_a 40S ribosomal protein R 99.9 2.8E-24 9.7E-29 162.8 20.4 151 2-163 188-368 (380)
119 4ggc_A P55CDC, cell division c 99.9 8.4E-23 2.9E-27 150.5 26.6 193 17-213 28-288 (318)
120 4gq1_A NUP37; propeller, trans 99.9 4.6E-25 1.6E-29 167.9 13.3 152 19-206 94-294 (393)
121 3bws_A Protein LP49; two-domai 99.9 7.2E-23 2.5E-27 157.2 25.5 180 2-198 199-432 (433)
122 2w18_A PALB2, fancn, partner a 99.9 9.2E-24 3.2E-28 154.9 19.2 145 2-163 166-350 (356)
123 4gga_A P55CDC, cell division c 99.9 1.1E-22 3.8E-27 156.0 25.7 194 16-213 107-368 (420)
124 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.3E-22 1.1E-26 153.2 25.1 186 4-209 168-397 (415)
125 3f3f_A Nucleoporin SEH1; struc 99.9 5.7E-23 2E-27 152.7 18.7 159 5-163 48-330 (351)
126 4aow_A Guanine nucleotide-bind 99.9 3.1E-22 1E-26 148.8 20.1 148 60-207 59-255 (340)
127 4a11_B DNA excision repair pro 99.9 8E-22 2.7E-26 149.8 20.2 197 2-199 130-406 (408)
128 2oit_A Nucleoporin 214KDA; NH2 99.9 5.4E-22 1.8E-26 152.7 14.1 157 13-199 91-279 (434)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-20 8.6E-25 142.8 17.9 182 2-201 103-347 (415)
130 2ojh_A Uncharacterized protein 99.9 9E-20 3.1E-24 132.6 19.4 181 2-201 30-261 (297)
131 3vgz_A Uncharacterized protein 99.9 2.2E-18 7.6E-23 128.6 25.8 194 2-207 77-312 (353)
132 2oit_A Nucleoporin 214KDA; NH2 99.8 5.5E-21 1.9E-25 147.1 10.6 160 14-197 36-222 (434)
133 1pby_B Quinohemoprotein amine 99.8 2.8E-18 9.5E-23 127.2 24.8 201 2-207 19-319 (337)
134 3vgz_A Uncharacterized protein 99.8 9.8E-19 3.4E-23 130.6 22.3 178 13-205 39-269 (353)
135 1nir_A Nitrite reductase; hemo 99.8 5.1E-18 1.7E-22 134.0 23.7 188 2-206 210-522 (543)
136 1nir_A Nitrite reductase; hemo 99.8 4.8E-18 1.6E-22 134.2 23.2 189 2-208 167-419 (543)
137 3u4y_A Uncharacterized protein 99.8 7.2E-18 2.5E-22 125.0 21.9 183 2-200 70-306 (331)
138 2ecf_A Dipeptidyl peptidase IV 99.8 8E-19 2.7E-23 143.3 17.7 187 14-203 36-326 (741)
139 1ri6_A Putative isomerase YBHE 99.8 1.2E-17 4E-22 124.1 21.2 171 12-197 35-261 (343)
140 3u4y_A Uncharacterized protein 99.8 2.3E-17 7.8E-22 122.3 21.9 157 2-201 28-210 (331)
141 1jmx_B Amine dehydrogenase; ox 99.8 6E-17 2.1E-21 120.6 23.1 199 2-206 29-333 (349)
142 1xfd_A DIP, dipeptidyl aminope 99.8 8.7E-18 3E-22 136.8 19.3 184 2-195 45-341 (723)
143 1ri6_A Putative isomerase YBHE 99.8 1E-16 3.4E-21 119.1 23.3 181 7-197 77-307 (343)
144 2ecf_A Dipeptidyl peptidase IV 99.8 4.8E-18 1.6E-22 138.7 17.2 166 16-197 110-366 (741)
145 2z3z_A Dipeptidyl aminopeptida 99.8 1.5E-17 5.3E-22 135.1 19.2 177 15-206 82-351 (706)
146 3hfq_A Uncharacterized protein 99.8 4.7E-16 1.6E-20 116.1 24.2 187 6-201 77-322 (347)
147 1xfd_A DIP, dipeptidyl aminope 99.8 2.1E-18 7.1E-23 140.5 11.9 179 16-202 18-293 (723)
148 3o4h_A Acylamino-acid-releasin 99.8 2.8E-18 9.5E-23 136.7 11.9 165 13-196 20-274 (582)
149 3scy_A Hypothetical bacterial 99.8 9.2E-16 3.1E-20 115.2 22.7 171 13-197 48-290 (361)
150 3hfq_A Uncharacterized protein 99.8 4.5E-16 1.5E-20 116.2 20.9 175 11-198 36-271 (347)
151 1k32_A Tricorn protease; prote 99.7 1.1E-16 3.7E-21 135.4 18.4 168 13-198 294-502 (1045)
152 1jmx_B Amine dehydrogenase; ox 99.7 2.2E-16 7.5E-21 117.6 17.7 123 19-158 4-165 (349)
153 2ojh_A Uncharacterized protein 99.7 4.4E-17 1.5E-21 118.3 13.3 170 4-189 73-293 (297)
154 1k32_A Tricorn protease; prote 99.7 1.5E-15 5.2E-20 128.4 24.1 191 8-200 372-639 (1045)
155 2z3z_A Dipeptidyl aminopeptida 99.7 3.6E-16 1.2E-20 127.1 18.3 169 17-200 183-437 (706)
156 1pby_B Quinohemoprotein amine 99.7 1.6E-15 5.6E-20 112.3 20.1 95 27-121 2-132 (337)
157 3pe7_A Oligogalacturonate lyas 99.7 1.8E-15 6.3E-20 114.4 19.9 184 2-201 18-276 (388)
158 1jof_A Carboxy-CIS,CIS-muconat 99.7 1.1E-14 3.7E-19 109.6 23.2 173 14-200 39-294 (365)
159 3scy_A Hypothetical bacterial 99.7 6.2E-14 2.1E-18 105.2 24.2 178 10-201 95-342 (361)
160 1z68_A Fibroblast activation p 99.7 1.7E-16 5.7E-21 129.3 10.6 190 2-200 44-348 (719)
161 4a5s_A Dipeptidyl peptidase 4 99.7 3.7E-15 1.3E-19 121.9 17.5 176 15-200 17-296 (740)
162 3dsm_A Uncharacterized protein 99.7 1.1E-13 3.8E-18 102.7 23.4 186 2-206 72-309 (328)
163 3pe7_A Oligogalacturonate lyas 99.7 8.3E-15 2.9E-19 110.8 16.9 183 2-201 68-332 (388)
164 1q7f_A NHL, brain tumor CG1071 99.6 3.5E-13 1.2E-17 97.9 24.1 171 13-200 75-282 (286)
165 1z68_A Fibroblast activation p 99.6 4.3E-15 1.5E-19 121.1 15.0 174 19-201 20-294 (719)
166 3o4h_A Acylamino-acid-releasin 99.6 1E-14 3.5E-19 116.2 15.5 162 17-197 112-314 (582)
167 1q7f_A NHL, brain tumor CG1071 99.6 8.6E-13 2.9E-17 95.8 23.1 169 13-197 28-237 (286)
168 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.5E-13 1.5E-17 100.8 21.4 155 13-199 143-342 (365)
169 3c5m_A Oligogalacturonate lyas 99.6 2.2E-13 7.5E-18 103.1 19.0 166 19-201 85-332 (396)
170 3azo_A Aminopeptidase; POP fam 99.6 1E-13 3.4E-18 112.0 17.7 161 5-197 115-322 (662)
171 3fvz_A Peptidyl-glycine alpha- 99.6 5.7E-13 1.9E-17 98.9 20.4 181 3-198 78-322 (329)
172 2dg1_A DRP35, lactonase; beta 99.6 1.1E-11 3.7E-16 91.9 26.8 177 5-197 35-262 (333)
173 3c5m_A Oligogalacturonate lyas 99.6 1.6E-14 5.5E-19 109.3 11.5 184 2-201 18-276 (396)
174 3e5z_A Putative gluconolactona 99.6 1.5E-12 5E-17 95.1 21.0 156 3-197 16-201 (296)
175 3fvz_A Peptidyl-glycine alpha- 99.6 1.3E-12 4.3E-17 97.0 20.2 186 14-205 23-284 (329)
176 4a5s_A Dipeptidyl peptidase 4 99.6 1.6E-13 5.4E-18 112.3 15.6 190 2-201 44-356 (740)
177 2oiz_A Aromatic amine dehydrog 99.5 7.6E-12 2.6E-16 94.1 23.4 197 2-205 39-343 (361)
178 1rwi_B Serine/threonine-protei 99.5 3.5E-12 1.2E-16 91.7 18.9 172 15-202 67-268 (270)
179 3no2_A Uncharacterized protein 99.5 4.9E-12 1.7E-16 91.6 18.8 169 25-204 4-201 (276)
180 2xdw_A Prolyl endopeptidase; a 99.5 5.2E-12 1.8E-16 103.0 21.0 177 13-205 123-375 (710)
181 3no2_A Uncharacterized protein 99.5 3.1E-11 1.1E-15 87.4 22.1 164 2-186 23-231 (276)
182 3e5z_A Putative gluconolactona 99.5 2E-11 6.7E-16 89.1 21.2 171 7-198 61-286 (296)
183 3azo_A Aminopeptidase; POP fam 99.5 9.4E-13 3.2E-17 106.3 14.1 176 9-200 18-276 (662)
184 1xip_A Nucleoporin NUP159; bet 99.5 3.3E-12 1.1E-16 96.2 15.3 145 16-200 39-193 (388)
185 2gop_A Trilobed protease; beta 99.4 2.5E-11 8.5E-16 90.4 18.8 161 15-200 59-293 (347)
186 2bkl_A Prolyl endopeptidase; m 99.4 1.4E-11 4.7E-16 100.2 18.1 168 12-197 118-348 (695)
187 2dg1_A DRP35, lactonase; beta 99.4 1.2E-11 4.1E-16 91.6 15.8 168 15-198 6-213 (333)
188 1rwi_B Serine/threonine-protei 99.4 9.6E-11 3.3E-15 84.1 19.1 170 16-200 25-224 (270)
189 1qks_A Cytochrome CD1 nitrite 99.4 3.5E-10 1.2E-14 89.7 23.4 173 2-205 185-380 (567)
190 3dsm_A Uncharacterized protein 99.4 1.9E-10 6.5E-15 85.3 20.2 166 16-201 45-256 (328)
191 1xip_A Nucleoporin NUP159; bet 99.4 3.8E-11 1.3E-15 90.4 15.1 129 12-156 86-230 (388)
192 3hrp_A Uncharacterized protein 99.3 2.2E-09 7.5E-14 82.0 23.6 176 15-200 131-356 (409)
193 2z2n_A Virginiamycin B lyase; 99.3 3.6E-09 1.2E-13 76.8 23.3 172 10-200 10-214 (299)
194 2xdw_A Prolyl endopeptidase; a 99.3 2.6E-10 8.7E-15 93.0 18.6 182 2-200 159-416 (710)
195 2mad_H Methylamine dehydrogena 99.3 7E-09 2.4E-13 78.2 24.2 181 17-204 127-356 (373)
196 2gop_A Trilobed protease; beta 99.3 9.3E-10 3.2E-14 81.8 19.1 166 3-197 94-330 (347)
197 2iwa_A Glutamine cyclotransfer 99.3 9.6E-09 3.3E-13 73.4 23.3 183 4-200 9-239 (266)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 4.7E-09 1.6E-13 76.8 21.8 171 13-199 69-300 (314)
199 3g4e_A Regucalcin; six bladed 99.3 2.5E-08 8.6E-13 72.8 25.0 178 10-205 8-236 (297)
200 2z2n_A Virginiamycin B lyase; 99.2 2.1E-08 7E-13 72.7 24.1 166 13-197 55-254 (299)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 1.1E-08 3.9E-13 74.8 22.8 175 10-202 13-260 (314)
202 1yr2_A Prolyl oligopeptidase; 99.2 1.9E-09 6.4E-14 88.4 19.0 168 13-197 161-392 (741)
203 2oiz_A Aromatic amine dehydrog 99.2 5.8E-09 2E-13 78.3 20.0 97 25-121 14-149 (361)
204 3c75_H MADH, methylamine dehyd 99.2 1.3E-08 4.3E-13 77.8 20.9 198 2-205 107-409 (426)
205 2qc5_A Streptogramin B lactona 99.2 1.2E-07 4.2E-12 68.6 25.0 166 13-196 18-216 (300)
206 3nol_A Glutamine cyclotransfer 99.1 3.5E-08 1.2E-12 69.8 20.3 113 5-122 32-164 (262)
207 3sjl_D Methylamine dehydrogena 99.1 1.2E-08 4.1E-13 76.7 18.4 186 16-207 138-372 (386)
208 3dr2_A Exported gluconolactona 99.1 4.1E-08 1.4E-12 71.9 21.0 153 6-199 36-225 (305)
209 2hz6_A Endoplasmic reticulum t 99.1 4.1E-11 1.4E-15 90.3 4.7 158 25-203 8-197 (369)
210 3hrp_A Uncharacterized protein 99.1 1.4E-07 4.7E-12 72.1 24.0 174 20-196 176-408 (409)
211 2qc5_A Streptogramin B lactona 99.1 1.9E-07 6.5E-12 67.6 23.9 166 14-197 61-259 (300)
212 2bkl_A Prolyl endopeptidase; m 99.1 1.2E-09 4.2E-14 88.9 13.3 166 18-201 171-400 (695)
213 2qe8_A Uncharacterized protein 99.1 2.2E-08 7.6E-13 74.6 18.6 168 13-200 65-280 (343)
214 3iuj_A Prolyl endopeptidase; h 99.1 1.4E-08 4.9E-13 82.6 18.0 169 13-199 127-360 (693)
215 3dr2_A Exported gluconolactona 99.1 6.9E-08 2.4E-12 70.7 19.5 166 8-189 79-298 (305)
216 1yr2_A Prolyl oligopeptidase; 99.0 2.3E-08 7.9E-13 82.0 17.7 166 17-200 211-443 (741)
217 3g4e_A Regucalcin; six bladed 99.0 5E-07 1.7E-11 65.8 22.5 159 13-186 52-260 (297)
218 3mbr_X Glutamine cyclotransfer 99.0 4.6E-07 1.6E-11 63.6 21.1 113 5-122 10-142 (243)
219 1mda_H Methylamine dehydrogena 99.0 6.3E-08 2.1E-12 72.7 17.8 52 2-55 54-115 (368)
220 3nok_A Glutaminyl cyclase; bet 99.0 2.8E-07 9.7E-12 65.3 19.0 112 5-122 44-173 (268)
221 1qks_A Cytochrome CD1 nitrite 99.0 1.6E-07 5.4E-12 74.6 19.0 122 61-199 176-330 (567)
222 2ece_A 462AA long hypothetical 99.0 1.6E-06 5.4E-11 66.2 23.4 162 24-198 93-352 (462)
223 2mad_H Methylamine dehydrogena 98.9 2.3E-06 7.8E-11 64.5 24.4 110 2-119 55-201 (373)
224 2ghs_A AGR_C_1268P; regucalcin 98.9 2.1E-06 7.2E-11 63.4 23.0 157 13-186 88-290 (326)
225 3sjl_D Methylamine dehydrogena 98.9 2.2E-07 7.5E-12 69.9 16.4 188 2-206 67-328 (386)
226 2ghs_A AGR_C_1268P; regucalcin 98.9 8.5E-06 2.9E-10 60.2 26.0 167 16-202 50-263 (326)
227 2hz6_A Endoplasmic reticulum t 98.8 1.8E-09 6.3E-14 81.3 2.9 114 2-121 27-157 (369)
228 3nol_A Glutamine cyclotransfer 98.8 6.6E-06 2.3E-10 58.3 20.3 122 1-124 72-212 (262)
229 1fwx_A Nitrous oxide reductase 98.7 2.1E-06 7E-11 67.7 18.0 158 24-198 99-361 (595)
230 1fwx_A Nitrous oxide reductase 98.7 4.8E-06 1.6E-10 65.7 19.6 156 29-200 18-310 (595)
231 3iuj_A Prolyl endopeptidase; h 98.7 1.3E-06 4.3E-11 71.2 17.2 164 18-200 178-407 (693)
232 1kb0_A Quinohemoprotein alcoho 98.7 2.2E-06 7.4E-11 69.7 18.2 143 63-205 284-514 (677)
233 3q7m_A Lipoprotein YFGL, BAMB; 98.7 4.2E-05 1.4E-09 57.4 23.7 169 25-203 102-301 (376)
234 3nok_A Glutaminyl cyclase; bet 98.7 9.1E-06 3.1E-10 57.7 18.3 120 1-123 82-220 (268)
235 3c75_H MADH, methylamine dehyd 98.7 5.9E-06 2E-10 63.2 18.4 99 24-122 82-218 (426)
236 1yiq_A Quinohemoprotein alcoho 98.7 5.8E-06 2E-10 67.3 19.3 60 63-122 276-347 (689)
237 2iwa_A Glutamine cyclotransfer 98.6 2.7E-05 9.2E-10 55.6 20.1 156 2-163 52-230 (266)
238 3mbr_X Glutamine cyclotransfer 98.6 3.7E-05 1.3E-09 54.0 20.2 121 2-124 51-190 (243)
239 2ece_A 462AA long hypothetical 98.6 9.6E-06 3.3E-10 61.9 18.2 170 16-186 139-399 (462)
240 1npe_A Nidogen, entactin; glyc 98.6 4.6E-05 1.6E-09 54.4 24.1 176 15-206 36-246 (267)
241 2qe8_A Uncharacterized protein 98.6 1E-05 3.5E-10 60.1 17.5 88 15-122 17-111 (343)
242 3hxj_A Pyrrolo-quinoline quino 98.5 8.4E-06 2.9E-10 59.9 16.0 172 4-198 126-324 (330)
243 1kb0_A Quinohemoprotein alcoho 98.5 1.8E-05 6.1E-10 64.4 18.8 98 25-122 127-301 (677)
244 3hxj_A Pyrrolo-quinoline quino 98.5 5.8E-06 2E-10 60.7 14.9 152 26-201 107-286 (330)
245 3q7m_A Lipoprotein YFGL, BAMB; 98.5 8.2E-05 2.8E-09 55.8 21.3 158 26-204 143-343 (376)
246 3qqz_A Putative uncharacterize 98.4 0.00018 6.1E-09 51.1 20.4 177 9-195 21-250 (255)
247 1yiq_A Quinohemoprotein alcoho 98.3 4.7E-05 1.6E-09 62.0 17.0 178 26-203 70-343 (689)
248 3amr_A 3-phytase; beta-propell 98.3 0.00021 7.1E-09 52.9 18.3 155 25-197 39-262 (355)
249 2p9w_A MAL S 1 allergenic prot 98.3 0.00011 3.7E-09 53.9 16.2 161 10-199 8-216 (334)
250 2fp8_A Strictosidine synthase; 98.3 0.00046 1.6E-08 50.7 20.9 166 15-197 19-268 (322)
251 1mda_H Methylamine dehydrogena 98.1 1.3E-05 4.3E-10 60.2 7.9 86 63-159 47-143 (368)
252 3v65_B Low-density lipoprotein 98.1 0.0017 5.8E-08 49.1 23.4 172 15-202 116-322 (386)
253 1kv9_A Type II quinohemoprotei 98.1 0.0007 2.4E-08 55.0 18.3 97 26-122 117-288 (668)
254 2ad6_A Methanol dehydrogenase 98.1 0.0014 4.7E-08 52.3 19.6 60 63-122 273-344 (571)
255 1kv9_A Type II quinohemoprotei 98.0 0.00058 2E-08 55.5 16.6 60 62-122 438-497 (668)
256 3v64_C Agrin; beta propeller, 98.0 0.0023 8E-08 47.6 23.9 172 15-202 73-279 (349)
257 1npe_A Nidogen, entactin; glyc 98.0 0.0019 6.5E-08 45.9 21.4 126 60-200 56-200 (267)
258 3tc9_A Hypothetical hydrolase; 97.9 0.00062 2.1E-08 52.3 15.1 118 63-198 160-301 (430)
259 3pbp_A Nucleoporin NUP82; beta 97.9 0.0012 4E-08 50.1 15.6 133 16-163 67-205 (452)
260 2xe4_A Oligopeptidase B; hydro 97.9 0.00016 5.3E-09 59.6 11.4 104 16-158 175-289 (751)
261 1w6s_A Methanol dehydrogenase 97.8 0.0042 1.4E-07 49.8 18.6 61 62-122 278-351 (599)
262 1flg_A Protein (quinoprotein e 97.8 0.0065 2.2E-07 48.6 19.8 61 62-122 291-364 (582)
263 3v64_C Agrin; beta propeller, 97.8 0.0049 1.7E-07 45.9 22.2 167 16-199 35-235 (349)
264 1flg_A Protein (quinoprotein e 97.8 0.0023 7.8E-08 51.2 16.3 61 61-122 465-525 (582)
265 2p4o_A Hypothetical protein; p 97.8 0.0051 1.8E-07 44.7 20.5 183 4-197 22-241 (306)
266 2fp8_A Strictosidine synthase; 97.8 0.0054 1.8E-07 44.9 18.8 98 84-198 186-313 (322)
267 2xzh_A Clathrin heavy chain 1; 97.8 0.0056 1.9E-07 44.9 21.3 189 20-213 72-305 (365)
268 3p5b_L Low density lipoprotein 97.8 0.007 2.4E-07 46.0 25.1 176 13-204 110-326 (400)
269 2ad6_A Methanol dehydrogenase 97.7 0.0025 8.5E-08 50.8 16.0 61 61-122 443-503 (571)
270 3v65_B Low-density lipoprotein 97.7 0.0077 2.6E-07 45.5 21.1 165 18-199 80-278 (386)
271 1ijq_A LDL receptor, low-densi 97.7 0.0082 2.8E-07 44.0 24.8 174 14-203 29-243 (316)
272 2xe4_A Oligopeptidase B; hydro 97.6 0.00022 7.7E-09 58.7 8.6 99 84-199 175-305 (751)
273 4a2l_A BT_4663, two-component 97.6 0.026 8.7E-07 46.8 21.5 171 15-200 310-528 (795)
274 1ijq_A LDL receptor, low-densi 97.6 0.012 4.2E-07 43.1 21.6 124 60-198 50-195 (316)
275 4hw6_A Hypothetical protein, I 97.5 0.018 6.1E-07 44.3 19.7 168 16-196 140-372 (433)
276 1n7d_A LDL receptor, low-densi 97.5 0.0015 5.2E-08 53.3 11.9 175 15-205 406-621 (699)
277 1bpo_A Protein (clathrin); cla 97.5 0.019 6.4E-07 43.9 21.9 189 20-213 71-304 (494)
278 1w6s_A Methanol dehydrogenase 97.5 0.019 6.6E-07 46.0 17.8 103 20-122 111-296 (599)
279 2p4o_A Hypothetical protein; p 97.5 0.016 5.6E-07 42.1 20.5 155 15-187 72-277 (306)
280 3qqz_A Putative uncharacterize 97.4 0.013 4.5E-07 41.5 14.5 105 78-197 22-150 (255)
281 4a2l_A BT_4663, two-component 97.4 0.037 1.3E-06 45.8 22.0 170 15-199 406-615 (795)
282 3sov_A LRP-6, low-density lipo 97.4 0.021 7.4E-07 41.9 22.5 171 16-202 36-242 (318)
283 3v9f_A Two-component system se 97.3 0.046 1.6E-06 45.2 18.9 171 15-199 363-569 (781)
284 3p5b_L Low density lipoprotein 97.3 0.033 1.1E-06 42.3 21.4 156 28-199 85-278 (400)
285 3m0c_C LDL receptor, low-densi 97.3 0.056 1.9E-06 44.8 24.4 174 13-202 422-636 (791)
286 3tc9_A Hypothetical hydrolase; 97.3 0.036 1.2E-06 42.5 22.0 105 7-112 171-300 (430)
287 1tl2_A L10, protein (tachylect 97.2 0.019 6.5E-07 39.7 12.6 147 15-198 41-208 (236)
288 3das_A Putative oxidoreductase 97.2 0.043 1.5E-06 40.8 17.4 121 7-158 24-158 (347)
289 2xbg_A YCF48-like protein; pho 97.1 0.044 1.5E-06 40.3 18.1 101 81-195 203-319 (327)
290 3pbp_A Nucleoporin NUP82; beta 97.1 0.016 5.5E-07 44.1 12.4 94 92-198 30-158 (452)
291 1k3i_A Galactose oxidase precu 97.0 0.011 3.8E-07 47.9 11.9 99 19-117 190-327 (656)
292 4hw6_A Hypothetical protein, I 97.0 0.072 2.5E-06 40.9 21.2 104 9-112 176-303 (433)
293 1k3i_A Galactose oxidase precu 97.0 0.078 2.7E-06 43.0 16.4 156 19-187 291-530 (656)
294 3sov_A LRP-6, low-density lipo 96.8 0.084 2.9E-06 38.7 18.3 124 60-198 55-197 (318)
295 3v9f_A Two-component system se 96.8 0.18 6.3E-06 41.7 19.9 168 14-198 406-611 (781)
296 2be1_A Serine/threonine-protei 96.7 0.018 6.3E-07 42.6 10.0 97 27-123 11-140 (339)
297 1n7d_A LDL receptor, low-densi 96.7 0.011 3.9E-07 48.2 9.6 100 84-198 454-571 (699)
298 3kya_A Putative phosphatase; s 96.7 0.15 5.1E-06 39.9 17.2 28 170-197 312-340 (496)
299 1xi4_A Clathrin heavy chain; a 96.7 0.042 1.4E-06 48.2 12.7 188 22-213 73-304 (1630)
300 1tl2_A L10, protein (tachylect 96.6 0.053 1.8E-06 37.5 10.9 91 83-193 41-158 (236)
301 3m0c_C LDL receptor, low-densi 96.6 0.25 8.5E-06 41.1 20.7 103 83-200 471-591 (791)
302 4a0p_A LRP6, LRP-6, low-densit 96.4 0.27 9.2E-06 39.7 24.3 172 15-203 37-242 (628)
303 3s94_A LRP-6, low-density lipo 96.4 0.29 1E-05 39.4 20.3 173 15-203 40-248 (619)
304 3sre_A PON1, serum paraoxonase 96.4 0.2 6.7E-06 37.4 18.7 155 16-188 51-287 (355)
305 1cru_A Protein (soluble quinop 96.3 0.26 8.8E-06 38.1 14.9 35 82-116 26-60 (454)
306 2p9w_A MAL S 1 allergenic prot 96.3 0.16 5.4E-06 37.4 12.5 93 61-163 99-208 (334)
307 1cru_A Protein (soluble quinop 96.0 0.37 1.3E-05 37.2 14.9 39 7-45 19-57 (454)
308 3a9g_A Putative uncharacterize 95.8 0.4 1.4E-05 35.6 14.1 110 14-158 28-153 (354)
309 3s94_A LRP-6, low-density lipo 95.7 0.62 2.1E-05 37.6 20.5 124 61-199 370-511 (619)
310 2ism_A Putative oxidoreductase 95.7 0.42 1.4E-05 35.5 14.6 112 14-158 30-153 (352)
311 2vpj_A Kelch-like protein 12; 95.7 0.37 1.3E-05 34.6 14.7 92 25-118 62-189 (301)
312 3ei3_A DNA damage-binding prot 95.7 0.98 3.3E-05 39.3 18.8 130 60-198 862-999 (1158)
313 2xn4_A Kelch-like protein 2; s 95.5 0.42 1.4E-05 34.3 12.0 92 25-118 61-187 (302)
314 2g8s_A Glucose/sorbosone dehyd 95.4 0.55 1.9E-05 34.9 15.8 29 14-43 17-46 (353)
315 3das_A Putative oxidoreductase 95.2 0.65 2.2E-05 34.5 12.3 35 82-116 31-65 (347)
316 3amr_A 3-phytase; beta-propell 95.1 0.7 2.4E-05 34.4 16.6 124 60-197 48-209 (355)
317 3sre_A PON1, serum paraoxonase 95.0 0.77 2.6E-05 34.2 17.0 125 60-198 81-252 (355)
318 3a9g_A Putative uncharacterize 94.7 0.55 1.9E-05 34.9 10.7 31 83-115 29-59 (354)
319 3ii7_A Kelch-like protein 7; p 94.5 0.88 3E-05 32.7 15.4 91 25-117 55-182 (306)
320 3sbq_A Nitrous-oxide reductase 94.4 0.83 2.8E-05 36.3 11.2 85 15-113 323-408 (638)
321 2ism_A Putative oxidoreductase 94.3 0.87 3E-05 33.8 11.2 27 83-110 31-57 (352)
322 2xzh_A Clathrin heavy chain 1; 94.1 1.3 4.4E-05 32.8 16.8 115 35-163 48-178 (365)
323 2wg3_C Hedgehog-interacting pr 93.9 1.7 5.8E-05 33.7 13.5 30 14-43 13-43 (463)
324 2xbg_A YCF48-like protein; pho 93.3 1.7 5.8E-05 31.7 18.1 95 81-192 161-273 (327)
325 2g8s_A Glucose/sorbosone dehyd 92.8 0.99 3.4E-05 33.5 9.3 30 83-112 18-47 (353)
326 3q6k_A 43.2 kDa salivary prote 92.7 2.4 8.4E-05 31.9 17.4 138 60-198 121-306 (381)
327 4a0p_A LRP6, LRP-6, low-densit 92.7 3.3 0.00011 33.5 22.9 171 15-202 340-553 (628)
328 4gq2_M Nucleoporin NUP120; bet 92.2 2.9 9.9E-05 35.7 12.1 39 84-122 237-275 (950)
329 3no0_A DNA gyrase subunit A; D 92.1 2.4 8.1E-05 30.3 13.9 108 82-199 67-197 (276)
330 1bpo_A Protein (clathrin); cla 91.9 3.6 0.00012 31.8 18.1 151 35-199 47-236 (494)
331 1zgk_A Kelch-like ECH-associat 91.7 2.7 9.2E-05 30.2 11.2 90 25-116 70-196 (308)
332 3kya_A Putative phosphatase; s 91.2 4.4 0.00015 31.7 23.5 36 168-203 444-480 (496)
333 4gq2_M Nucleoporin NUP120; bet 91.0 1.2 4.1E-05 37.9 8.6 39 16-54 237-275 (950)
334 3sbq_A Nitrous-oxide reductase 89.7 6.8 0.00023 31.4 18.9 75 28-102 72-196 (638)
335 2wg3_C Hedgehog-interacting pr 89.6 6 0.0002 30.7 12.3 30 83-112 14-44 (463)
336 1zgk_A Kelch-like ECH-associat 89.6 4.1 0.00014 29.3 9.6 90 25-116 121-243 (308)
337 2xn4_A Kelch-like protein 2; s 88.8 4.9 0.00017 28.6 11.6 90 25-116 108-232 (302)
338 4asc_A Kelch repeat and BTB do 88.5 5.2 0.00018 28.7 9.6 54 62-117 165-225 (315)
339 3ii7_A Kelch-like protein 7; p 87.9 5.7 0.0002 28.3 12.3 90 25-116 101-228 (306)
340 2vpj_A Kelch-like protein 12; 87.3 6.2 0.00021 28.0 14.1 91 25-117 112-235 (301)
341 1xi4_A Clathrin heavy chain; a 87.2 6.6 0.00022 35.3 10.4 109 35-157 47-168 (1630)
342 4asc_A Kelch repeat and BTB do 87.0 6.7 0.00023 28.2 13.7 53 62-116 117-177 (315)
343 2woz_A Kelch repeat and BTB do 86.2 7.6 0.00026 27.9 9.3 90 25-116 109-234 (318)
344 2woz_A Kelch repeat and BTB do 84.4 9.4 0.00032 27.4 13.8 26 92-117 157-188 (318)
345 3zwu_A Alkaline phosphatase PH 84.3 6.5 0.00022 31.6 8.5 59 85-157 478-548 (592)
346 4fhn_B Nucleoporin NUP120; pro 84.2 1.4 4.8E-05 38.3 5.1 39 84-122 239-277 (1139)
347 4fhn_B Nucleoporin NUP120; pro 83.8 1.3 4.6E-05 38.5 4.8 39 16-54 239-277 (1139)
348 3f7f_A Nucleoporin NUP120; nuc 81.8 3.5 0.00012 33.8 6.2 37 16-54 223-259 (729)
349 3f7f_A Nucleoporin NUP120; nuc 81.6 3.3 0.00011 34.0 6.0 37 84-122 223-259 (729)
350 2uvk_A YJHT; unknown function, 81.0 14 0.00047 27.0 10.0 16 36-51 168-183 (357)
351 4a9v_A PHOX; hydrolase, beta-p 80.3 16 0.00056 29.2 9.3 60 84-157 477-548 (592)
352 3zwu_A Alkaline phosphatase PH 75.1 24 0.00084 28.3 9.1 40 61-100 508-548 (592)
353 2be1_A Serine/threonine-protei 74.2 24 0.00082 26.1 10.2 30 94-123 10-39 (339)
354 3ei3_A DNA damage-binding prot 72.6 50 0.0017 29.1 21.9 60 60-120 530-598 (1158)
355 4a9v_A PHOX; hydrolase, beta-p 72.4 36 0.0012 27.3 9.9 41 60-100 507-548 (592)
356 3s25_A Hypothetical 7-bladed b 66.5 34 0.0011 24.7 18.5 93 20-117 58-180 (302)
357 2zwa_A Leucine carboxyl methyl 63.2 61 0.0021 26.5 12.2 24 93-116 451-480 (695)
358 3ott_A Two-component system se 61.4 67 0.0023 26.4 20.5 168 15-199 63-261 (758)
359 3s25_A Hypothetical 7-bladed b 60.8 44 0.0015 24.1 14.9 48 61-113 87-138 (302)
360 3qhy_B Beta-lactamase inhibito 60.2 43 0.0015 23.8 11.2 92 16-113 25-129 (282)
361 3izo_F Fiber; pentameric pento 54.1 37 0.0013 27.2 6.2 110 88-214 381-498 (581)
362 4h3o_A Lectin; cadmium, plant 49.2 38 0.0013 19.9 7.9 17 144-160 54-70 (105)
363 3qhy_B Beta-lactamase inhibito 47.1 73 0.0025 22.5 9.1 92 16-113 64-168 (282)
364 2zwa_A Leucine carboxyl methyl 46.7 1.2E+02 0.0041 24.8 9.7 54 63-117 469-526 (695)
365 1suu_A DNA gyrase subunit A; t 43.8 90 0.0031 22.6 16.8 98 93-199 113-232 (312)
366 3uc1_A DNA gyrase subunit A; D 43.3 95 0.0032 22.7 16.5 143 25-198 108-279 (327)
367 2uvk_A YJHT; unknown function, 43.2 91 0.0031 22.5 8.1 21 25-45 19-40 (357)
368 4gz8_A Semaphorin-3A; multi-do 42.7 35 0.0012 27.9 4.7 41 153-193 431-495 (667)
369 1zi0_A DNA gyrase subunit A; b 40.8 1E+02 0.0034 22.3 15.7 102 83-198 95-226 (307)
370 1q47_A Semaphorin 3A; beta pro 36.9 48 0.0016 26.0 4.6 27 167-193 461-487 (495)
371 3a0c_A Mannose/sialic acid-bin 34.1 73 0.0025 18.8 10.7 72 17-98 21-97 (110)
372 3mez_A Mannose-specific lectin 29.7 90 0.0031 18.4 10.1 44 17-70 21-68 (111)
373 1b2p_A Protein (lectin); manno 28.7 98 0.0034 18.6 10.5 44 17-69 31-78 (119)
374 1olz_A Semaphorin 4D; developm 26.1 85 0.0029 25.7 4.4 53 141-193 398-477 (663)
375 1xd5_A Gastrodianin-1, antifun 24.7 1.1E+02 0.0039 17.9 12.1 72 16-98 19-95 (112)
376 3no0_A DNA gyrase subunit A; D 24.2 1.9E+02 0.0066 20.4 15.6 102 83-198 116-246 (276)
377 3ott_A Two-component system se 22.8 3.2E+02 0.011 22.4 17.8 88 84-189 192-299 (758)
378 3mwp_A Nucleoprotein; structur 21.2 25 0.00087 26.9 0.5 19 184-202 162-180 (577)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.6e-38 Score=231.89 Aligned_cols=206 Identities=15% Similarity=0.222 Sum_probs=168.9
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
-+..+++++|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..+...+ .|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 35678899999999999999999999999999999999999999999998877654 79999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecc-----cccccc-c-ce-------
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRS-----SLEFSL-N-YW------- 132 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~-----~~~~~~-~-~~------- 132 (216)
|+++++.+..+.+|...|.+++|+|+++++++|+.|++|++||++++.. ...+... ...+.+ . ..
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999987743 3333321 011111 0 01
Q ss_pred ---------------EEEeeeecCeEEEEeCC--CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCe
Q 043942 133 ---------------MICTSLYDGVTCLSWPG--TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRES 181 (216)
Q Consensus 133 ---------------~~~~~~~~~v~~~~~~~--~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~ 181 (216)
....++...+..+.|+| ++.++++++.|+.+ .+|...|..++|+|++++
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 11112345677777765 66788888888877 678899999999999999
Q ss_pred EEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 182 LVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 182 l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
|++++.||+|++||+.+++....+..+.
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSS
T ss_pred EEEEcCCCeEEEEECCCCceeeeccCCC
Confidence 9999999999999999888776665543
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-36 Score=226.23 Aligned_cols=194 Identities=18% Similarity=0.247 Sum_probs=169.9
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------- 59 (216)
+...++++|.+.|++++|+|++++|++++.|+.|++||..+++....+..+...+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 4567899999999999999999999999999999999998877666555433211
Q ss_pred ------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC
Q 043942 60 ------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN 103 (216)
Q Consensus 60 ------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d 103 (216)
.|++|++||+++++.+..+.+|.+.|.+++|+|+++++++|+.|
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 57889999999999889999999999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------Ee---ee
Q 043942 104 ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DG---HI 167 (216)
Q Consensus 104 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~---~~ 167 (216)
+.|++||+++++....+.. |...|.+++|+|++++|++++.|+.+ .. +.
T Consensus 206 ~~v~~wd~~~~~~~~~~~~---------------h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTG---------------HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp SCEEEEETTTCSEEEEECC---------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred CcEEEEECCCCeeEEEEcC---------------CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc
Confidence 9999999999998888876 89999999999999999999999988 11 22
Q ss_pred CCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942 168 DAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 168 ~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
..|.+++|+|++++|++++.|+.|++||+.+.+....+..|...+.
T Consensus 271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 316 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEE
Confidence 4799999999999999999999999999998887777776665443
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-36 Score=233.04 Aligned_cols=197 Identities=23% Similarity=0.377 Sum_probs=179.7
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
+++++++.++++|.+.|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...+ .|++|
T Consensus 137 ~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i 216 (410)
T 1vyh_C 137 YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216 (410)
T ss_dssp TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence 35788889999999999999999999999999999999999999999888887776654 79999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
++||++++.++..+.+|...|.+++++|+++++++|+.|+.|++||+++++....+.. |...|.+
T Consensus 217 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~---------------h~~~v~~ 281 (410)
T 1vyh_C 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE---------------HRHVVEC 281 (410)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEEE
T ss_pred EEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC---------------CCceEEE
Confidence 9999999999999999999999999999999999999999999999999988888876 8899999
Q ss_pred EEeCCC--------------------CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942 145 LSWPGT--------------------SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGT 190 (216)
Q Consensus 145 ~~~~~~--------------------~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~ 190 (216)
++|+|+ +.++++++.|+.+ .+|...|.+++|+|++++|++++.|+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 361 (410)
T 1vyh_C 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361 (410)
T ss_dssp EEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred EEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 999996 6789999999988 578899999999999999999999999
Q ss_pred EEEEEcccccceeecCCcceeE
Q 043942 191 ARVFEIAEFRRATKAPSYSFKL 212 (216)
Q Consensus 191 v~vw~~~~~~~~~~~~~~~~~~ 212 (216)
|++||+.+++....+..|...+
T Consensus 362 i~vwd~~~~~~~~~~~~h~~~v 383 (410)
T 1vyh_C 362 LRVWDYKNKRCMKTLNAHEHFV 383 (410)
T ss_dssp EEEECCTTSCCCEEEECCSSCE
T ss_pred EEEEECCCCceEEEEcCCCCcE
Confidence 9999999888777776665443
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=223.71 Aligned_cols=192 Identities=16% Similarity=0.221 Sum_probs=175.0
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
+...+.+|...|.+++|++++.++++++.|+.|++||+.+++.+..+..+...+ .++.|++||+
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 345688999999999999999999999999999999999999998887765433 7899999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
++++....+..|...+.+++|+|++++|++|+.|+.|++||+++++.+..+.. |..+|.+++|+|
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------h~~~v~~l~~sp 216 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG---------------HAMPIRSLTFSP 216 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---------------CSSCCCEEEECT
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc---------------cCCceeEEEEcC
Confidence 99999999999999999999999999999999999999999999998888876 889999999999
Q ss_pred CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942 150 TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL 212 (216)
Q Consensus 150 ~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~ 212 (216)
++++|++++.|+.+ .+|...|.+++|+|++++|++++.|++|++||+.+++++..+..+...+
T Consensus 217 d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v 293 (321)
T 3ow8_A 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV 293 (321)
T ss_dssp TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE
Confidence 99999999999988 5688899999999999999999999999999999988887776665444
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=227.52 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=154.2
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG 72 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~ 72 (216)
+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+..+.+|...+ .|++|++||++++
T Consensus 123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~ 202 (344)
T 4gqb_B 123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202 (344)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS
T ss_pred ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc
Confidence 44899999999999999999999999999999999999999999887765 7899999999999
Q ss_pred ceeeeee--ccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 73 AYLNMFS--GHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 73 ~~~~~~~--~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
++...+. .|...+.+++|+|+ ++++++|+.|+.|++||+++++.+..+.. |...|++++|+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~---------------h~~~v~~v~fsp 267 (344)
T 4gqb_B 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV---------------HSQCVTGLVFSP 267 (344)
T ss_dssp SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC---------------CSSCEEEEEECS
T ss_pred ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC---------------CCCCEEEEEEcc
Confidence 8887764 45567899999994 56889999999999999999999988887 999999999999
Q ss_pred CC-cEEEEecccCeE-------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEcccccce
Q 043942 150 TS-KYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 150 ~~-~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
++ ++|++++.|+.+ .+|...|.+++|+|+++ +|++++.|++|++|++.+....
T Consensus 268 ~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 268 HSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp SSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 98 579999999988 67899999999999986 5678999999999999875443
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.6e-36 Score=228.19 Aligned_cols=189 Identities=15% Similarity=0.233 Sum_probs=174.0
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
...+.+|.++|++++|+|++++|++|+.|+.|++||+.+++....+.+|...+ .|++|++||++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 55788999999999999999999999999999999999999999998887765 79999999999
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
+++.+..+.+|...|.+++|+|+++++++|+.|+.|++||++++..+..+.. |...+.++.++|+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---------------h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG---------------HREWVRMVRPNQD 245 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------CSSCEEEEEECTT
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC---------------CCccEEEEEECCC
Confidence 9999999999999999999999999999999999999999999998888876 8899999999999
Q ss_pred CcEEEEecccCeE--------------EeeeCCEEEEEEecC--------------------CCeEEEEeCCCcEEEEEc
Q 043942 151 SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAI--------------------RESLVSVSVDGTARVFEI 196 (216)
Q Consensus 151 ~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~--------------------~~~l~s~~~d~~v~vw~~ 196 (216)
+.++++++.|+.+ ..|...|.+++|+|+ +.+|++++.|+.|++||+
T Consensus 246 g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~ 325 (410)
T 1vyh_C 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325 (410)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999999988 468889999999996 678999999999999999
Q ss_pred ccccceeecCCcce
Q 043942 197 AEFRRATKAPSYSF 210 (216)
Q Consensus 197 ~~~~~~~~~~~~~~ 210 (216)
.+++....+..|..
T Consensus 326 ~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 326 STGMCLMTLVGHDN 339 (410)
T ss_dssp TTTEEEEEEECCSS
T ss_pred CCCceEEEEECCCC
Confidence 99887776665543
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-35 Score=220.26 Aligned_cols=182 Identities=20% Similarity=0.255 Sum_probs=168.3
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
+++++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+..+...+ .|+.|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 35778888999999999999999999999999999999999999998888777665433 79999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
++||+++++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+.. |...|.+
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------h~~~v~~ 253 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG---------------HASWVLN 253 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC---------------CSSCEEE
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC---------------CCCceEE
Confidence 9999999999999999999999999999999999999999999999999988888876 8999999
Q ss_pred EEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 145 LSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
++|+|++++|++++.|+.+ .+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999988 4688999999999999999999999999999963
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.8e-35 Score=219.23 Aligned_cols=194 Identities=20% Similarity=0.303 Sum_probs=168.1
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC-----------------------------
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP----------------------------- 55 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----------------------------- 55 (216)
+..+++++|.+.|++++|+|++++|+||+.|++|++||..+++....+..+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 457789999999999999999999999999999999998887665544332
Q ss_pred -------------------CCcc----------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC--CCcEEE
Q 043942 56 -------------------RGGI----------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT--DGKTIC 98 (216)
Q Consensus 56 -------------------~~~~----------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~ 98 (216)
...+ .|++|++||+++++.+..+.+|...|.+++|+| ++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 1111 789999999999999999999999999999988 568999
Q ss_pred EecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------E-
Q 043942 99 TGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------D- 164 (216)
Q Consensus 99 t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~- 164 (216)
+|+.|+.|++||+++++.+..+.. |...|.+++|+|++.+|++++.|+.+ .
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~---------------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFET---------------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECC---------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEeCCCeEEEEECCCCcEEEEecC---------------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 999999999999999998888876 89999999999999999999999988 0
Q ss_pred --eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942 165 --GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 165 --~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
.+...+.+++|+|++++|++++.|+.|++||+.+++....+..|...+.
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~ 330 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence 1224689999999999999999999999999998887777766655443
No 9
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.2e-35 Score=215.64 Aligned_cols=188 Identities=21% Similarity=0.402 Sum_probs=171.4
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
..+..++.+|.+.|++++|+|++++|++++.|+.|++|+..+++....+..|...+ .|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567888999999999999999999999999999999999999988888877655 79999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
|+++++.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++.+..+.. |..++.+++|
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~~ 157 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA---------------HSDPVSAVHF 157 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---------------CCCcEEEEEE
Confidence 9999999999999999999999999999999999999999999999998888876 8899999999
Q ss_pred CCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 148 PGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
+|+++++++++.|+.+ ..+...+..++|+|++++|++++.|+.|++||+.+++......
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence 9999999999999988 2345679999999999999999999999999999887665543
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.8e-35 Score=218.36 Aligned_cols=180 Identities=19% Similarity=0.278 Sum_probs=154.7
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------ 59 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------ 59 (216)
+.++..+++|...|.+++|+|++++|++++.|++|++||+.+++....+.+|...+
T Consensus 55 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred cccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34677899999999999999999999999999999999999999988888877654
Q ss_pred ---------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe
Q 043942 60 ---------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG 100 (216)
Q Consensus 60 ---------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~ 100 (216)
.|+.|++||+++.+....+.+|...|.+++|+|++++|+++
T Consensus 135 d~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 135 TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred ECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 34455566666555666677899999999999999999999
Q ss_pred cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------
Q 043942 101 SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------- 163 (216)
Q Consensus 101 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------- 163 (216)
+.|+.|++||+++++.+..+. ....+.+++|+|++.++++++.++..
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~----------------~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 278 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLS----------------AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEE----------------CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCC
T ss_pred eCCCeEEEEECCCCcEEEEec----------------CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccc
Confidence 999999999999998888776 45689999999999999988876632
Q ss_pred ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
..|...+.+++|+|+|++|++++.|+.|++||+.+.
T Consensus 279 ~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 124567899999999999999999999999998764
No 11
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.4e-35 Score=218.27 Aligned_cols=182 Identities=17% Similarity=0.221 Sum_probs=153.4
Q ss_pred CCceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc-----eEEEEeCCCCcc-----------------
Q 043942 3 QGDWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN-----LQCTVEGPRGGI----------------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~----------------- 59 (216)
+.++..+|+||.+.|++++|+|+ +++|+||+.|++|++||+.+.+ ....+.+|...+
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 34566789999999999999997 6899999999999999987643 344455554433
Q ss_pred --------------------------------------------------------------------------------
Q 043942 60 -------------------------------------------------------------------------------- 59 (216)
Q Consensus 60 -------------------------------------------------------------------------------- 59 (216)
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence
Q ss_pred ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 133 (216)
.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++|+.|+.|++||+++++.+..+.
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------ 254 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD------------ 254 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE------------
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec------------
Confidence 67889999999998888999999999999999999999999999999999999998888776
Q ss_pred EEeeeecCeEEEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942 134 ICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGT 190 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~ 190 (216)
+...+.++.|+|++.+++ ++.|+.+ ..|...|++++|+|++++|++++.||.
T Consensus 255 ----~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~ 329 (340)
T 4aow_A 255 ----GGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329 (340)
T ss_dssp ----CSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSC
T ss_pred ----CCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 557899999999876554 5567765 357789999999999999999999999
Q ss_pred EEEEEcccccc
Q 043942 191 ARVFEIAEFRR 201 (216)
Q Consensus 191 v~vw~~~~~~~ 201 (216)
|+|||++++++
T Consensus 330 v~iW~~~tGtr 340 (340)
T 4aow_A 330 VRVWQVTIGTR 340 (340)
T ss_dssp EEEEEEEC---
T ss_pred EEEEeCCCcCC
Confidence 99999998753
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.5e-35 Score=223.56 Aligned_cols=190 Identities=18% Similarity=0.307 Sum_probs=155.0
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------ 59 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------ 59 (216)
..+.+++++|.+.|++++|+|++++|++|+.|++|++||..+++....+..|...+
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 45678899999999999999999999999999999999998877666554321100
Q ss_pred --------------------------------------------------------------------------------
Q 043942 60 -------------------------------------------------------------------------------- 59 (216)
Q Consensus 60 -------------------------------------------------------------------------------- 59 (216)
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence
Q ss_pred ----------cCcEEEEEECC-CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccc
Q 043942 60 ----------EDSTVWMWNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS 128 (216)
Q Consensus 60 ----------~~~~v~i~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 128 (216)
.|++|++||++ +++.+..+.+|.+.|.+++|+|++++|++|+.|++|++||+++++.+..+........
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccc
Confidence 45566666665 3455666778999999999999999999999999999999999988877754211000
Q ss_pred ccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942 129 LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGT 190 (216)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~ 190 (216)
.+...+.+++|+|+|+++++++.||.+ .+|...|.+++|+|+|++|++|+.|++
T Consensus 296 --------~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 296 --------NELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367 (380)
T ss_dssp --------CSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSC
T ss_pred --------cccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCC
Confidence 023358899999999999999999987 258889999999999999999999999
Q ss_pred EEEEEcccccc
Q 043942 191 ARVFEIAEFRR 201 (216)
Q Consensus 191 v~vw~~~~~~~ 201 (216)
|++|++...+.
T Consensus 368 i~iW~~~~~~~ 378 (380)
T 3iz6_a 368 LKIWAFSGHRK 378 (380)
T ss_dssp EEEEECCSSSS
T ss_pred EEEEecCCCcc
Confidence 99999987654
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-34 Score=214.07 Aligned_cols=186 Identities=22% Similarity=0.274 Sum_probs=163.1
Q ss_pred ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCC-----ceEEEEeCCCCcc----------------cCc
Q 043942 5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSR-----NLQCTVEGPRGGI----------------EDS 62 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~----------------~~~ 62 (216)
.+..+|.+|.+.|++++|+|++ ++|++|+.|++|++|++... ..+..+.+|...+ .|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4567889999999999999965 89999999999999998642 3456777777655 799
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
+|++||+++++.+..+.+|...|.+++|+|+++++++|+.|+.|++||++ ++.+..+.. |...+
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~---------------h~~~v 151 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG---------------HNDWV 151 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECC---------------CSSCE
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEec---------------cCCcE
Confidence 99999999999999999999999999999999999999999999999997 455555655 88999
Q ss_pred EEEEeCCC------CcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 143 TCLSWPGT------SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 143 ~~~~~~~~------~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.++.|.|. +..+++++.|+.+ .+|...|.+++|+|++++|++++.|+.|++||+.+.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999985 4489999999988 468899999999999999999999999999999988776
Q ss_pred eecC
Q 043942 203 TKAP 206 (216)
Q Consensus 203 ~~~~ 206 (216)
..+.
T Consensus 232 ~~~~ 235 (319)
T 3frx_A 232 YTLS 235 (319)
T ss_dssp EEEE
T ss_pred EEec
Confidence 5544
No 14
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.9e-34 Score=215.80 Aligned_cols=177 Identities=20% Similarity=0.330 Sum_probs=159.7
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW 67 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~ 67 (216)
....+.+|.+.|.+++|+|+++.|++++.|++|++||+++++.+..+.+|...+ .|+.|++|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 456777899999999999999999999999999999999999998888776543 78999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
|+++++++..+.+|...|.+++|+|+++.|++|+.|++|++||++.++.+..+.... +...+.+++|
T Consensus 226 d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~-------------~~~~~~~~~~ 292 (354)
T 2pbi_B 226 DMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES-------------IIFGASSVDF 292 (354)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------------CCSCEEEEEE
T ss_pred ECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-------------cccceeEEEE
Confidence 999999999999999999999999999999999999999999999887766654311 3457899999
Q ss_pred CCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 148 PGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
+|+++++++++.|+.+ .+|...|.+++|+|+|++|++++.|++|++|+
T Consensus 293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999987 57889999999999999999999999999996
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=216.99 Aligned_cols=181 Identities=21% Similarity=0.357 Sum_probs=155.9
Q ss_pred CCceeEEeecccc-ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE--E-eCCCCcc----------------cCc
Q 043942 3 QGDWASEILGHKD-SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT--V-EGPRGGI----------------EDS 62 (216)
Q Consensus 3 ~g~~~~~~~~h~~-~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~--~-~~~~~~~----------------~~~ 62 (216)
+.+++.++.+|.+ .|++++|+|+|++||+|+.|+.|++||+.++..... + .+|...+ .|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3467889999988 999999999999999999999999999988764322 2 3455443 799
Q ss_pred EEEEEECCCc--ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce---eEEeecccccccccceEEEee
Q 043942 63 TVWMWNADRG--AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 63 ~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 137 (216)
++++||++++ +.+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.. +..+..
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------------- 148 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS--------------- 148 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC---------------
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC---------------
Confidence 9999999866 45678899999999999999999999999999999999987643 333443
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
|...|.+++|+|++.+|++++.|+.+ .+|...|.+++|+|++++|++++.|++|++|+...
T Consensus 149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 88899999999999999999999977 46788999999999999999999999999999743
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.6e-34 Score=213.11 Aligned_cols=177 Identities=21% Similarity=0.376 Sum_probs=159.8
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWN 68 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d 68 (216)
+....+.+|.+.|.++.|++++. +++++.|+.|++||+.+++....+.+|...+ .|+.|++||
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 35567889999999999999875 8999999999999999999999988877655 799999999
Q ss_pred CCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 69 ADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
++++..+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+.... +...|.+++|+
T Consensus 213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s 279 (340)
T 1got_B 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN-------------IICGITSVSFS 279 (340)
T ss_dssp TTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT-------------CCSCEEEEEEC
T ss_pred CCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC-------------cccceEEEEEC
Confidence 99999999999999999999999999999999999999999999888776664211 34579999999
Q ss_pred CCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 149 GTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
|+++++++++.|+.+ .+|..+|.+++|+|++++|++++.|+.|++||
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999987 67899999999999999999999999999996
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-34 Score=218.35 Aligned_cols=178 Identities=18% Similarity=0.222 Sum_probs=155.8
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCcEEEEEECCCc
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDSTVWMWNADRG 72 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~~v~i~d~~~~ 72 (216)
..+|.+.|++++|+|++++|++++.|+.|++||+++++.+..+..|...+ .|+.|++||++++
T Consensus 135 ~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~ 214 (357)
T 4g56_B 135 KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214 (357)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS
T ss_pred cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC
Confidence 44799999999999999999999999999999999999999988877654 7899999999998
Q ss_pred ceeeeee--ccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 73 AYLNMFS--GHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 73 ~~~~~~~--~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
++...+. .|...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+.. +...|++++|+|
T Consensus 215 ~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~---------------~~~~v~~l~~sp 279 (357)
T 4g56_B 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV---------------HSQNITGLAYSY 279 (357)
T ss_dssp SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC---------------CSSCEEEEEECS
T ss_pred ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec---------------cceeEEEEEEcC
Confidence 8776554 46678999999997 56889999999999999999998888876 889999999999
Q ss_pred CC-cEEEEecccCeE-------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccccce
Q 043942 150 TS-KYLVTGCVDGKV-------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 150 ~~-~~l~~~~~~~~i-------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
++ ++|++++.|+.+ .+|...|++++|+| ++++|++++.||+|++|++.+..+.
T Consensus 280 ~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 280 HSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp SSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred CCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 87 578999999988 57889999999998 7999999999999999999765433
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.4e-33 Score=211.16 Aligned_cols=181 Identities=20% Similarity=0.300 Sum_probs=155.7
Q ss_pred ceeEEeeccccceEEEEE-----cc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc------------
Q 043942 5 DWASEILGHKDSFSSLAF-----ST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI------------ 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~-----s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~------------ 59 (216)
++..++++|.+.|++++| ++ ++++|++|+.|++|++||+.+. .....+.+|...+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456789999999999999 77 8999999999999999998753 3455666776654
Q ss_pred ----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEE
Q 043942 60 ----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 60 ----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (216)
.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ........
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~------------ 158 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEK------------ 158 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTT------------
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecc------------
Confidence 7999999999999999999999999999999999999999999999999999843 32222210
Q ss_pred eeeecCeEEEEeCCCC----------cEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEE
Q 043942 136 TSLYDGVTCLSWPGTS----------KYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTAR 192 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~----------~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~ 192 (216)
..|...+.+++|+|++ .++++++.|+.+ .+|...|.+++|+|+|++|++++.|+.|+
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEE
Confidence 0177889999999987 789999999987 57889999999999999999999999999
Q ss_pred EEEccc
Q 043942 193 VFEIAE 198 (216)
Q Consensus 193 vw~~~~ 198 (216)
+||+.+
T Consensus 239 iwd~~~ 244 (343)
T 2xzm_R 239 IWDILN 244 (343)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999954
No 19
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-33 Score=213.59 Aligned_cols=187 Identities=24% Similarity=0.328 Sum_probs=161.3
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS 79 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~ 79 (216)
.|.+++|+|+|++|++|+.|+.|++||+.+++....+.+|...+ .|++|++||+++++....+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 49999999999999999999999999999999999998887765 79999999999998887776
Q ss_pred ccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 80 GHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 80 ~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
+...+.+++|+| +++++++|+.|+.|++||+++++.+..+..... ...+|...|.+++|+|++++|++++
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~--------~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--------SGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc--------CCCCCCCCEEEEEECCCCCEEEEEe
Confidence 567799999999 899999999999999999999887766632110 0113788999999999999999999
Q ss_pred ccCeE--------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCccee
Q 043942 159 VDGKV--------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFK 211 (216)
Q Consensus 159 ~~~~i--------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~ 211 (216)
.|+.+ .+|...|.+++|+|++++|++++.|+.|++||+.+++....+..|...
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence 99987 247778999999999999999999999999999998887766665543
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-33 Score=207.29 Aligned_cols=182 Identities=22% Similarity=0.298 Sum_probs=149.1
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEE-eC-CCCcc----------------c
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTV-EG-PRGGI----------------E 60 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~-~~-~~~~~----------------~ 60 (216)
+.+.++++++++|.++|++++|+|+ +|++|+.|+.|++||+..+ +....+ .. |...+ .
T Consensus 1 ~~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~ 78 (330)
T 2hes_X 1 MASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78 (330)
T ss_dssp --CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred CcccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence 3567789999999999999999987 9999999999999999875 344445 23 55444 7
Q ss_pred CcEEEEEECCC-------cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC----ceeEEeecccccccc
Q 043942 61 DSTVWMWNADR-------GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG----ENFHAIRRSSLEFSL 129 (216)
Q Consensus 61 ~~~v~i~d~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~ 129 (216)
|++|++||++. .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++.. +.+..+..
T Consensus 79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~------- 151 (330)
T 2hes_X 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE------- 151 (330)
T ss_dssp TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-------
T ss_pred CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-------
Confidence 99999999853 3456778899999999999999999999999999999999532 33445554
Q ss_pred cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEecC--CCeEEEEeCCCcE
Q 043942 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSAI--RESLVSVSVDGTA 191 (216)
Q Consensus 130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~~--~~~l~s~~~d~~v 191 (216)
|...|.+++|+|++.+|++++.|+.+ .+|...|.+++|+|+ +.+|++++.|++|
T Consensus 152 --------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 152 --------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp --------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred --------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 88999999999999999999999987 357889999999998 6789999999999
Q ss_pred EEEEcccc
Q 043942 192 RVFEIAEF 199 (216)
Q Consensus 192 ~vw~~~~~ 199 (216)
++||+...
T Consensus 224 ~iw~~~~~ 231 (330)
T 2hes_X 224 RVWKYMGD 231 (330)
T ss_dssp EEEEEEEE
T ss_pred EEEEecCC
Confidence 99999764
No 21
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=208.43 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=154.1
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE----eCCCCcc----------------cCcEEEEEECCC
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV----EGPRGGI----------------EDSTVWMWNADR 71 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~----~~~~~~~----------------~~~~v~i~d~~~ 71 (216)
.|...|.+++|+|++ .|++|+.||.|++||+.+++..... .+|...+ .|++|++||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999985 7889999999999999988655433 3566554 899999999999
Q ss_pred cceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
++.+..+.+|...|++++|+|++. ++++++.|+.|++||+++++....+.... +...+.+++|+|+
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA-------------PGYLPTSLAWHPQ 225 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------------CCCEEEEEECSS
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce-------------eeccceeeeecCC
Confidence 999999999999999999999875 78999999999999999998887765311 5567899999985
Q ss_pred -CcEEEEecccCeE--------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccceeecCCccee
Q 043942 151 -SKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRATKAPSYSFK 211 (216)
Q Consensus 151 -~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~ 211 (216)
++++++|+.|+.+ .+|...|++++|+|++ ++|++++.|++|+|||+.+++.. .+..|.-.
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~ 301 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF 301 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC
Confidence 5688999999987 6789999999999998 58999999999999999887654 34444433
No 22
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=210.81 Aligned_cols=202 Identities=18% Similarity=0.253 Sum_probs=152.1
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc----------------cCcEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~----------------~~~~v~ 65 (216)
+++.++.+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...+ .|++|+
T Consensus 96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence 4577889999999999999999999999999999999998764 344555555433 799999
Q ss_pred EEECCCcc--eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe-eeecCe
Q 043942 66 MWNADRGA--YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT-SLYDGV 142 (216)
Q Consensus 66 i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 142 (216)
+||.+++. ....+.+|...|.+++|+|++++|++++.|++|++||.........+................ .|...|
T Consensus 176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 176 LYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred EEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 99998775 456788999999999999999999999999999999974332111100000000000011111 277889
Q ss_pred EEEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEccc
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~ 198 (216)
.+++|+|++..+++++.|+.+ .+|...|.+++|+|++ .+|++++.||+|++|++.+
T Consensus 256 ~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 256 YDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp EEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred EEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 999999999999999999877 1567889999999998 4899999999999999998
Q ss_pred ccceeecC
Q 043942 199 FRRATKAP 206 (216)
Q Consensus 199 ~~~~~~~~ 206 (216)
.+...+.|
T Consensus 336 ~~~~~~~~ 343 (345)
T 3fm0_A 336 PEGLHHHH 343 (345)
T ss_dssp --------
T ss_pred CCCccccc
Confidence 88765544
No 23
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.8e-33 Score=203.60 Aligned_cols=178 Identities=20% Similarity=0.291 Sum_probs=151.6
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC--CceEEEEeCCCCcc------------------cCcEEEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS--RNLQCTVEGPRGGI------------------EDSTVWM 66 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~~~~~~~~~~~~~~------------------~~~~v~i 66 (216)
+..+.+|.+.|++++|+|+|++||+|+.|++|++||+.. .+.+.++.+|...+ .|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 456789999999999999999999999999999999974 35666776665443 7999999
Q ss_pred EECCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeec
Q 043942 67 WNADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 67 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
||+++++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.. |..
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~---------------h~~ 146 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA---------------HAI 146 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC---------------CSS
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec---------------ccC
Confidence 9999774 55667889999999999997 88999999999999999987632 233333 888
Q ss_pred CeEEEEeCCC-------------CcEEEEecccCeE------------------EeeeCCEEEEEEecCC---CeEEEEe
Q 043942 141 GVTCLSWPGT-------------SKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIR---ESLVSVS 186 (216)
Q Consensus 141 ~v~~~~~~~~-------------~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~---~~l~s~~ 186 (216)
.|.+++|+|+ +++|++++.|+.+ .+|...|.+++|+|++ ++|++++
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 9999999997 5799999999977 3578899999999984 8999999
Q ss_pred CCCcEEEEEcccc
Q 043942 187 VDGTARVFEIAEF 199 (216)
Q Consensus 187 ~d~~v~vw~~~~~ 199 (216)
.|++|++||+.+.
T Consensus 227 ~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 227 QDRTCIIWTQDNE 239 (297)
T ss_dssp TTSCEEEEEESST
T ss_pred CCCcEEEEEeCCC
Confidence 9999999999764
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.9e-33 Score=210.14 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=156.6
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-----------c-----cCcEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-----------I-----EDSTV 64 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-----------~-----~~~~v 64 (216)
+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..+... . .|+.|
T Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 3567788899999999999999999999999999999999999999877766543221 1 78999
Q ss_pred EEEECCCcceeeee-------eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 65 WMWNADRGAYLNMF-------SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 65 ~i~d~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
++||++++..+..+ .+|...|.+++|+|++++|++|+.|+.|++||+++.......... ..........+
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~---~~~~~~~~~~~ 308 (393)
T 1erj_A 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP---NSGTCEVTYIG 308 (393)
T ss_dssp EEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------CEEEEEEC
T ss_pred EEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC---CCCcceEEEec
Confidence 99999998877766 578999999999999999999999999999999865432211100 00011122334
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEec------CCCeEEEEeCCCcEEEEEcc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSA------IRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~------~~~~l~s~~~d~~v~vw~~~ 197 (216)
|...|.+++|+|++.+|++++.|+.+ .+|...|.+++|++ ++++|++++.||+|++|++.
T Consensus 309 h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 88899999999999999999999988 67889999999986 68899999999999999987
Q ss_pred ccc
Q 043942 198 EFR 200 (216)
Q Consensus 198 ~~~ 200 (216)
..+
T Consensus 389 ~~~ 391 (393)
T 1erj_A 389 KIA 391 (393)
T ss_dssp EC-
T ss_pred ccC
Confidence 543
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.4e-32 Score=200.95 Aligned_cols=197 Identities=22% Similarity=0.331 Sum_probs=168.9
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~ 65 (216)
.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...+ .|+.|+
T Consensus 53 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 53 YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 4677888999999999999999999999999999999999999999999988877654 799999
Q ss_pred EEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 66 MWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
+||+++++.+..+..|...|.+++|+|+++++++++.|+.|++||+++++.+..+... +...+..+
T Consensus 133 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------------~~~~~~~~ 198 (312)
T 4ery_A 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD--------------DNPPVSFV 198 (312)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS--------------SCCCEEEE
T ss_pred EEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc--------------CCCceEEE
Confidence 9999999999999999999999999999999999999999999999998877665431 56679999
Q ss_pred EeCCCCcEEEEecccCeE--------------EeeeCCE--EEEEEe-cCCCeEEEEeCCCcEEEEEcccccceeecCCc
Q 043942 146 SWPGTSKYLVTGCVDGKV--------------DGHIDAI--QSLSVS-AIRESLVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i--------------~~~~~~i--~~~~~~-~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
+|+|+++++++++.|+.+ .+|...+ ....++ +++++|++++.||.|++||+.+++....+..|
T Consensus 199 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 278 (312)
T 4ery_A 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278 (312)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC
T ss_pred EECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc
Confidence 999999999999999988 2232221 222343 67889999999999999999998887777666
Q ss_pred ceeE
Q 043942 209 SFKL 212 (216)
Q Consensus 209 ~~~~ 212 (216)
...+
T Consensus 279 ~~~v 282 (312)
T 4ery_A 279 TDVV 282 (312)
T ss_dssp SSCE
T ss_pred CCcE
Confidence 5443
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-32 Score=220.81 Aligned_cols=187 Identities=20% Similarity=0.259 Sum_probs=162.1
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------c---
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------E--- 60 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~--- 60 (216)
++++....+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++ ....+..|...+ .
T Consensus 47 ~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~ 126 (611)
T 1nr0_A 47 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 126 (611)
T ss_dssp TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC
Confidence 4677888999999999999999999999999999999999997543 345666666544 1
Q ss_pred -CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 61 -DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 61 -~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
.+.|++|| ++.....+.+|...|.+++|+|++. .|++|+.|++|++||..+++....+.. |
T Consensus 127 ~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~---------------H 189 (611)
T 1nr0_A 127 RFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE---------------H 189 (611)
T ss_dssp CSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC---------------C
T ss_pred ceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc---------------c
Confidence 14677777 4666778899999999999999987 599999999999999998888887776 9
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE--------------E-------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------D-------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~-------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
...|.+++|+|++++|++++.|+.+ . +|...|.+++|+|++++|++++.|++|++||+.
T Consensus 190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999988 1 688999999999999999999999999999999
Q ss_pred cccceeec
Q 043942 198 EFRRATKA 205 (216)
Q Consensus 198 ~~~~~~~~ 205 (216)
+++....+
T Consensus 270 ~~~~~~~~ 277 (611)
T 1nr0_A 270 TLKVEKTI 277 (611)
T ss_dssp TTEEEEEE
T ss_pred CCceeeee
Confidence 87766544
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-32 Score=216.81 Aligned_cols=175 Identities=27% Similarity=0.477 Sum_probs=159.3
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
+++++.++.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...+ .|+.|++
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence 46778889999999999999999999999999999999995 567777777776654 7899999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.+..+.. |...|++++
T Consensus 453 w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~---------------h~~~v~~l~ 515 (577)
T 2ymu_A 453 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG---------------HSSSVRGVA 515 (577)
T ss_dssp EET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC---------------CSSCEEEEE
T ss_pred EEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC---------------CCCCEEEEE
Confidence 996 46778889999999999999999999999999999999995 5777777776 899999999
Q ss_pred eCCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 147 WPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
|+|++++|++++.|+.+ .+|...|++++|+|||++|++++.|++|++||
T Consensus 516 ~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 516 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999988 67999999999999999999999999999997
No 28
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.1e-32 Score=200.09 Aligned_cols=180 Identities=15% Similarity=0.208 Sum_probs=150.1
Q ss_pred CceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------cC
Q 043942 4 GDWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------ED 61 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~~ 61 (216)
++++.++.+|.++|++++|+| ++++|++|+.|++|++||+++++ .+..+..|...+ .|
T Consensus 43 ~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence 467789999999999999986 48999999999999999998763 344444443322 78
Q ss_pred cEEEEEECCCcc--eeeeeeccCCCeeEEEEcCC-------------CcEEEEecCCCeEEEEeCCCCc----eeEEeec
Q 043942 62 STVWMWNADRGA--YLNMFSGHGSGLTCGDFTTD-------------GKTICTGSDNATLSIWNPKGGE----NFHAIRR 122 (216)
Q Consensus 62 ~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~l~t~~~d~~i~~wd~~~~~----~~~~~~~ 122 (216)
++|++||++++. ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++ ....+..
T Consensus 123 ~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~ 202 (297)
T 2pm7_B 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (297)
T ss_dssp SEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred CcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC
Confidence 999999998763 24567789999999999997 5799999999999999998765 3344544
Q ss_pred ccccccccceEEEeeeecCeEEEEeCCCC---cEEEEecccCeE-------------------EeeeCCEEEEEEecCCC
Q 043942 123 SSLEFSLNYWMICTSLYDGVTCLSWPGTS---KYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIRE 180 (216)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~~ 180 (216)
|...|.+++|+|++ .+|++++.|+.+ ..|...|.+++|+|+++
T Consensus 203 ---------------H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 267 (297)
T 2pm7_B 203 ---------------HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 267 (297)
T ss_dssp ---------------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred ---------------CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence 89999999999984 899999999987 13456899999999999
Q ss_pred eEEEEeCCCcEEEEEccc
Q 043942 181 SLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 181 ~l~s~~~d~~v~vw~~~~ 198 (216)
+|++++.|+.|++|+...
T Consensus 268 ~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEETTSCEEEEEECT
T ss_pred EEEEEcCCCcEEEEEECC
Confidence 999999999999999864
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=8.7e-32 Score=201.44 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=144.4
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
+.+...+.+|...|.+++|+|++.++++++.|++|++||+.+++....+.+|...+ .|++|++|
T Consensus 66 ~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w 145 (343)
T 2xzm_R 66 GIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145 (343)
T ss_dssp EEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred ccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence 45667889999999999999999999999999999999999999999998887765 79999999
Q ss_pred ECCCcceeee--eeccCCCeeEEEEcCCC----------cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEE
Q 043942 68 NADRGAYLNM--FSGHGSGLTCGDFTTDG----------KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 68 d~~~~~~~~~--~~~~~~~v~~~~~~~~~----------~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (216)
|+........ ..+|...|.+++|+|++ .++++++.|+.|++||. +.+....+..
T Consensus 146 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~------------- 211 (343)
T 2xzm_R 146 NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA------------- 211 (343)
T ss_dssp ESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC-------------
T ss_pred eccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC-------------
Confidence 9984333222 23688899999999987 78999999999999994 4555555555
Q ss_pred eeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|...|.+++|+|++++|++++.|+.+ ..+...|.+++|+|++++++++ .|+.|++|++.+.
T Consensus 212 --h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 212 --HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred --ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 77888888888888888888888877 2244567888888887766544 4677888877653
No 30
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=7.2e-32 Score=200.82 Aligned_cols=197 Identities=17% Similarity=0.257 Sum_probs=157.9
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC----ceEEEEeCCCCcc------------------cCcEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR----NLQCTVEGPRGGI------------------EDSTV 64 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~----~~~~~~~~~~~~~------------------~~~~v 64 (216)
...+.+|.+.|++++|+|++++|++++.||.|++||+.++ +....+..|...+ .|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3467899999999999999999999999999999999876 3555555555433 78999
Q ss_pred EEEECCCc---------ceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCceeEEeecc----------
Q 043942 65 WMWNADRG---------AYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENFHAIRRS---------- 123 (216)
Q Consensus 65 ~i~d~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~---------- 123 (216)
++||++++ +.+..+..|...|.+++|+|+ ++++++++.|+.|++||+++++.+..+...
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999876 557788889999999999999 999999999999999999877643222110
Q ss_pred --------cccccc---------------------------cceEEEeeeecCeEEEEeCCCC----cEEEEecccCeE-
Q 043942 124 --------SLEFSL---------------------------NYWMICTSLYDGVTCLSWPGTS----KYLVTGCVDGKV- 163 (216)
Q Consensus 124 --------~~~~~~---------------------------~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~i- 163 (216)
...+.+ .......+|...|.+++|+|++ ++|++++.||.+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 000000 0122233578899999999998 899999999987
Q ss_pred -----------------------------------------------------------EeeeCCEEEEEEecCCCeEEE
Q 043942 164 -----------------------------------------------------------DGHIDAIQSLSVSAIRESLVS 184 (216)
Q Consensus 164 -----------------------------------------------------------~~~~~~i~~~~~~~~~~~l~s 184 (216)
.+|...|++++|+|++++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 126679999999999999999
Q ss_pred EeCCCcEEEEEccccccee
Q 043942 185 VSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 185 ~~~d~~v~vw~~~~~~~~~ 203 (216)
++.||.|++|++.+++...
T Consensus 324 ~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp EETTSCEEEEEECTTSCEE
T ss_pred ecCCCcEEEEecCcCcchh
Confidence 9999999999999876544
No 31
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-32 Score=203.90 Aligned_cols=182 Identities=22% Similarity=0.315 Sum_probs=156.8
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC--CCceEEEEeCCCCcc------------------cCcE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS--SRNLQCTVEGPRGGI------------------EDST 63 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~~------------------~~~~ 63 (216)
|+++..+++|.+.|.+++|+|++++|++++.|+.|++||+. +++....+..|...+ .|+.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 56788999999999999999999999999999999999998 556666676665544 7899
Q ss_pred EEEEECCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEee
Q 043942 64 VWMWNADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 64 v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 137 (216)
|++||+++++ .+..+..|...|.+++|+|+ ++++++++.|+.|++||++++.. ...+..
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--------------- 145 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA--------------- 145 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC---------------
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC---------------
Confidence 9999999886 77778889999999999999 99999999999999999998743 233333
Q ss_pred eecCeEEEEeCC-------------CCcEEEEecccCeE------------------EeeeCCEEEEEEecC---CCeEE
Q 043942 138 LYDGVTCLSWPG-------------TSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAI---RESLV 183 (216)
Q Consensus 138 ~~~~v~~~~~~~-------------~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~---~~~l~ 183 (216)
|...|.+++|+| ++.++++++.|+.+ .+|...|.+++|+|+ +++|+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEE
Confidence 888999999999 69999999999987 347889999999999 89999
Q ss_pred EEeCCCcEEEEEccccc
Q 043942 184 SVSVDGTARVFEIAEFR 200 (216)
Q Consensus 184 s~~~d~~v~vw~~~~~~ 200 (216)
+++.||.|++||+.+++
T Consensus 226 s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 226 SVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEETTSCEEEEEESSTT
T ss_pred EEeCCCEEEEEeCCCCC
Confidence 99999999999998864
No 32
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.8e-31 Score=203.78 Aligned_cols=185 Identities=23% Similarity=0.363 Sum_probs=155.0
Q ss_pred CCCceeEEee--ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------------
Q 043942 2 NQGDWASEIL--GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------------- 59 (216)
++|+++..+. +|...|++++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...+
T Consensus 133 ~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~ 212 (420)
T 4gga_A 133 SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIH 212 (420)
T ss_dssp TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCcee
Confidence 5777777665 577889999999999999999999999999999999988888776544
Q ss_pred -------------------------------------cCcEEEEEECCCcc----eeeeeeccCCCeeEEEEcCCCc-EE
Q 043942 60 -------------------------------------EDSTVWMWNADRGA----YLNMFSGHGSGLTCGDFTTDGK-TI 97 (216)
Q Consensus 60 -------------------------------------~~~~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l 97 (216)
.|+.+++||..+++ .+.....|...|.+++|+|++. .+
T Consensus 213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence 67888888887654 3455667889999999999654 45
Q ss_pred EE--ecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec--ccCeE----------
Q 043942 98 CT--GSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC--VDGKV---------- 163 (216)
Q Consensus 98 ~t--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~i---------- 163 (216)
++ |+.|+.|++||+.+++....+. ....+.++.|+|+++.+++++ .|+.+
T Consensus 293 a~~~gs~D~~I~iwd~~t~~~~~~~~----------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSGACLSAVD----------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp EEEECTTTCEEEEEETTTTEEEEEEE----------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred EEEeecCCCEEEEEeCCccccceeec----------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 44 5689999999999999888776 556889999999999888754 67776
Q ss_pred ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.+|...|++++|+|+|++|+||+.|++|++||+.+..+.
T Consensus 357 v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 357 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 679999999999999999999999999999999765443
No 33
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.5e-31 Score=199.19 Aligned_cols=186 Identities=15% Similarity=0.197 Sum_probs=160.9
Q ss_pred CCceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEe--CCCCcc-----------------cCc
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVE--GPRGGI-----------------EDS 62 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~--~~~~~~-----------------~~~ 62 (216)
+.++...+.+|.+.|++++|+|++ ++|++|+.|+.|++||+.+++....+. .|...+ .|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 456778899999999999999999 999999999999999999888777765 355443 789
Q ss_pred EEEEEECCCcceeeeeecc---CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 63 TVWMWNADRGAYLNMFSGH---GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.|++||+++ ..+..+..+ ...|.+++|+|+++++++++.|+.|++||++ ++.+..+.. |.
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~---------------h~ 204 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKL---------------HK 204 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEEC---------------SS
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEecc---------------CC
Confidence 999999996 444555443 4789999999999999999999999999994 677777766 88
Q ss_pred cCeEEEEeCCCCc-EEEEecccCeE-----------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEccccc
Q 043942 140 DGVTCLSWPGTSK-YLVTGCVDGKV-----------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 140 ~~v~~~~~~~~~~-~l~~~~~~~~i-----------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
..|.+++|+|+++ ++++++.|+.+ ..|...|.+++|+| ++++|++++.|+.|++||+++++
T Consensus 205 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 205 AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence 9999999999999 89999999987 46788999999999 99999999999999999999877
Q ss_pred ceeec
Q 043942 201 RATKA 205 (216)
Q Consensus 201 ~~~~~ 205 (216)
....+
T Consensus 285 ~~~~~ 289 (383)
T 3ei3_B 285 KPDQI 289 (383)
T ss_dssp SCSEE
T ss_pred ccccc
Confidence 65443
No 34
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.3e-31 Score=214.30 Aligned_cols=190 Identities=19% Similarity=0.310 Sum_probs=161.3
Q ss_pred eeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCC-----ceEEEEeCCCCcc----------------cCcE
Q 043942 6 WASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSR-----NLQCTVEGPRGGI----------------EDST 63 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~----------------~~~~ 63 (216)
....+++|.+.|++++|+|++ ++|+||+.|++|++||+.+. .....+.+|...+ .|++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445789999999999999864 79999999999999999764 3455677777655 7999
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
|++||+.++..+..+.+|...|.+++|+|++++|++++.|++|++||+........... . .+|...|.
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~-----------~~h~~~v~ 521 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG-G-----------EGHRDWVS 521 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-T-----------TSCSSCEE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC-C-----------CCCCCcEE
Confidence 99999999999999999999999999999999999999999999999875433322211 0 02778899
Q ss_pred EEEeCCCC--cEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 144 CLSWPGTS--KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 144 ~~~~~~~~--~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
+++|+|++ ..+++++.|+.+ .+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 601 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence 99999987 589999999988 56889999999999999999999999999999998887665443
No 35
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-32 Score=203.54 Aligned_cols=176 Identities=19% Similarity=0.320 Sum_probs=143.7
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------cCcEEEEE
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------EDSTVWMW 67 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~~~~v~i~ 67 (216)
..+.+|.+.|++++|+|+|++||+|+.|++|++||+.+++ .+..+.+|...+ .|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3467899999999999999999999999999999998764 456676665433 78999999
Q ss_pred ECCCc--ceeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCcee---EEeecccccccccceEEEeeeec
Q 043942 68 NADRG--AYLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 68 d~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
|++++ .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+... ..+.. |..
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~---------------h~~ 151 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA---------------HTI 151 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS---------------SSS
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc---------------ccC
Confidence 99987 456678889999999999997 789999999999999999876432 12222 778
Q ss_pred CeEEEEeCCC-----------------CcEEEEecccCeE-----------------EeeeCCEEEEEEecCC----CeE
Q 043942 141 GVTCLSWPGT-----------------SKYLVTGCVDGKV-----------------DGHIDAIQSLSVSAIR----ESL 182 (216)
Q Consensus 141 ~v~~~~~~~~-----------------~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~----~~l 182 (216)
.+.+++|+|+ +.+|++++.|+.+ .+|..+|.+++|+|++ ++|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 8899999987 4689999999876 3578899999999987 789
Q ss_pred EEEeCCCcEEEEEccc
Q 043942 183 VSVSVDGTARVFEIAE 198 (216)
Q Consensus 183 ~s~~~d~~v~vw~~~~ 198 (216)
++++.|++|++|++.+
T Consensus 232 as~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EEEETTCEEEEEECSS
T ss_pred EEEcCCCeEEEEEccC
Confidence 9999999999999876
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.3e-30 Score=193.65 Aligned_cols=177 Identities=19% Similarity=0.322 Sum_probs=159.1
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEECCCcc
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWNADRGA 73 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d~~~~~ 73 (216)
+|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..+...+ .++.|++||+++++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~ 174 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 789999999999999999999999999999999887 555566555443 78999999999999
Q ss_pred eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 74 YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 74 ~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
.+..+..|...+.+++|+|+++++++++.|+.|++||+++++....+. +...+.+++|+|++++
T Consensus 175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----------------~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----------------FTSQIFSLGYCPTGEW 238 (337)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CSSCEEEEEECTTSSE
T ss_pred eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec----------------CCCceEEEEECCCCCE
Confidence 999999999999999999999999999999999999999998877765 6778999999999999
Q ss_pred EEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 154 LVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 154 l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
+++++.++.+ ..|...|.+++|+|++++|++++.||.|++|++.+++....
T Consensus 239 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 302 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302 (337)
T ss_dssp EEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence 9999999987 56788999999999999999999999999999998776543
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-31 Score=201.90 Aligned_cols=188 Identities=12% Similarity=0.167 Sum_probs=146.9
Q ss_pred eeccccceEEEEEccCCCEEEEEcC------CCcEEEEECCCCceE----EEEeCCCCcc---------------cCcEE
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGF------HGLVQNRDTSSRNLQ----CTVEGPRGGI---------------EDSTV 64 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~------d~~v~vwd~~~~~~~----~~~~~~~~~~---------------~~~~v 64 (216)
..+|...|++++|+|||++|++++. |+.|++|+..++... .....+...+ .+++|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v 117 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAV 117 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCE
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEE
Confidence 4569999999999999999999997 778999998765422 2222233222 88999
Q ss_pred EEEECCCcceee----eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 65 WMWNADRGAYLN----MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 65 ~i~d~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
++||+.+++... ...+|...|++++|+|++++|++|+.|+.|++||+++++.+..+.. |..
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~---------------h~~ 182 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA---------------HSS 182 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC---------------CSS
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---------------CCC
Confidence 999999876543 2347999999999999999999999999999999999999888887 899
Q ss_pred CeEEEEeCCCCc-EEEEecccCeE----------------EeeeCCEEEEEEecCC-CeEEEEeCCCcEEEEEcccccce
Q 043942 141 GVTCLSWPGTSK-YLVTGCVDGKV----------------DGHIDAIQSLSVSAIR-ESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 141 ~v~~~~~~~~~~-~l~~~~~~~~i----------------~~~~~~i~~~~~~~~~-~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.|++++|+|++. ++++++.|+.+ ..+...+.+++|+|++ .+|++++.|+.|++||+++++..
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence 999999999875 78899999987 2456679999999975 67889999999999999998887
Q ss_pred eecCCcceeE
Q 043942 203 TKAPSYSFKL 212 (216)
Q Consensus 203 ~~~~~~~~~~ 212 (216)
..+..+...+
T Consensus 263 ~~~~~~~~~v 272 (357)
T 4g56_B 263 QTSAVHSQNI 272 (357)
T ss_dssp EEECCCSSCE
T ss_pred EEEeccceeE
Confidence 7766655443
No 38
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-30 Score=207.07 Aligned_cols=190 Identities=25% Similarity=0.403 Sum_probs=166.1
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...+ .|+.|++|
T Consensus 334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence 4566788899999999999999999999999999999995 567777777766654 78999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
|. +++.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++.+..+.. |...|.+++|
T Consensus 413 ~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~---------------~~~~v~~~~~ 475 (577)
T 2ymu_A 413 NR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG---------------HSSSVRGVAF 475 (577)
T ss_dssp CT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEEC---------------CSSCEEEEEE
T ss_pred eC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcC---------------CCCCEEEEEE
Confidence 95 567788899999999999999999999999999999999964 666666665 8899999999
Q ss_pred CCCCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942 148 PGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL 212 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~ 212 (216)
+|++++|++++.|+.+ .+|...|++++|+|++++|++++.|+.|++||. +++.+..+..|+..+
T Consensus 476 spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v 552 (577)
T 2ymu_A 476 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 552 (577)
T ss_dssp CTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCE
T ss_pred cCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCE
Confidence 9999999999999987 678899999999999999999999999999996 566666666665444
No 39
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-30 Score=194.68 Aligned_cols=179 Identities=21% Similarity=0.320 Sum_probs=147.3
Q ss_pred eeEEe-ec-cccceEEEEEccCCCEEEEEcCCCcEEEEECCC-------CceEEEEeCCCCcc----------------c
Q 043942 6 WASEI-LG-HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-------RNLQCTVEGPRGGI----------------E 60 (216)
Q Consensus 6 ~~~~~-~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------~~~~~~~~~~~~~~----------------~ 60 (216)
.+..+ .+ |.+.|.+++|+|++++|++++.|++|++||+.. .+....+.+|...+ .
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred EEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 44555 34 999999999999999999999999999999853 34556666666554 7
Q ss_pred CcEEEEEECCC----cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC--ceeEEeecccccccccceEE
Q 043942 61 DSTVWMWNADR----GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG--ENFHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 61 ~~~v~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~ 134 (216)
|++|++||++. .+.+..+.+|...|.+++|+|++++|++++.|++|++||..++ +.+..+..
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~------------ 195 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG------------ 195 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC------------
T ss_pred CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC------------
Confidence 99999999953 2456778899999999999999999999999999999998866 45556655
Q ss_pred EeeeecCeEEEEeCCC--CcEEEEecccCeE------E-----------------eeeCCEEEEEEecCCCeEEEEeCCC
Q 043942 135 CTSLYDGVTCLSWPGT--SKYLVTGCVDGKV------D-----------------GHIDAIQSLSVSAIRESLVSVSVDG 189 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~--~~~l~~~~~~~~i------~-----------------~~~~~i~~~~~~~~~~~l~s~~~d~ 189 (216)
|...|.+++|+|+ +.++++++.|+.+ . .|...|.+++|++++ +|++++.||
T Consensus 196 ---h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg 271 (330)
T 2hes_X 196 ---HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG 271 (330)
T ss_dssp ---CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS
T ss_pred ---CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC
Confidence 8999999999998 6789999999987 1 177899999999765 899999999
Q ss_pred cEEEEEccccc
Q 043942 190 TARVFEIAEFR 200 (216)
Q Consensus 190 ~v~vw~~~~~~ 200 (216)
.|++|+..+++
T Consensus 272 ~v~iw~~~~~~ 282 (330)
T 2hes_X 272 VLAVYEEVDGE 282 (330)
T ss_dssp CEEEEEEETTE
T ss_pred EEEEEEcCCCc
Confidence 99999987653
No 40
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.6e-31 Score=206.05 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=150.8
Q ss_pred ceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc-----------------cCcEE
Q 043942 5 DWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI-----------------EDSTV 64 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~-----------------~~~~v 64 (216)
+......+|...|+||+|+| ++++||+|+.||.|++||+.+++....+ .+|...+ .|++|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 34556778999999999999 5679999999999999999877544433 3455444 78999
Q ss_pred EEEECCCcceeeeeec--cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 65 WMWNADRGAYLNMFSG--HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
++||++++........ +...+.+++|+|++++|++|+.|+.|++||++ ++.+..+.. |...|
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~---------------h~~~v 253 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRM---------------HKKKV 253 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBC---------------CSSCE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEec---------------ccceE
Confidence 9999987654333332 33467899999999999999999999999987 444455554 88999
Q ss_pred EEEEeCCCCc-EEEEecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 143 TCLSWPGTSK-YLVTGCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 143 ~~~~~~~~~~-~l~~~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
.+++|+|++. ++++++.|+.+ .+|...|.+++|+|+|++|++++.|+.|++||+.+++....
T Consensus 254 ~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 254 THVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp EEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred EeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence 9999999886 67889999977 46888999999999999999999999999999998776554
Q ss_pred c
Q 043942 205 A 205 (216)
Q Consensus 205 ~ 205 (216)
+
T Consensus 334 ~ 334 (435)
T 4e54_B 334 L 334 (435)
T ss_dssp E
T ss_pred E
Confidence 4
No 41
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-30 Score=193.90 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=162.4
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-----------------------
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----------------------- 57 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----------------------- 57 (216)
+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+.....
T Consensus 61 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 61 SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCC
Confidence 357888999999999999999999999999999999999999998876655531110
Q ss_pred ------------------------------------cc----------------cCcEEEEEECCC-cceeeeeeccCCC
Q 043942 58 ------------------------------------GI----------------EDSTVWMWNADR-GAYLNMFSGHGSG 84 (216)
Q Consensus 58 ------------------------------------~~----------------~~~~v~i~d~~~-~~~~~~~~~~~~~ 84 (216)
.+ .++.|++||+++ +..+..+..|...
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 220 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS 220 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC
T ss_pred CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc
Confidence 00 678899999998 6788888899999
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC---
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG--- 161 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--- 161 (216)
|.+++|+|++++|++++.|+.|++||+++++....+. +...+..++|+|+++++++++.++
T Consensus 221 v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (369)
T 3zwl_B 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----------------TDCPLNTAVITPLKEFIILGGGQEAKD 284 (369)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----------------CSSCEEEEEECSSSSEEEEEECCC---
T ss_pred eeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----------------CCCCceeEEecCCCceEEEeecCCCce
Confidence 9999999999999999999999999999998888776 667899999999999999998877
Q ss_pred -----------eE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 162 -----------KV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 162 -----------~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.+ .+|...|.+++|+|++++|++++.||.|++|++..+...
T Consensus 285 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 285 VTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp ----------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 22 568899999999999999999999999999999875543
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-30 Score=214.81 Aligned_cols=205 Identities=15% Similarity=0.227 Sum_probs=170.9
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
-+..+.+.+|.+.|.+++|+|++++|++++.||.|++||+.+++....+..|...+ .++.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 35678899999999999999999999999999999999999999999999887765 78999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEeeccc-----ccccc-cceEEE-----
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSS-----LEFSL-NYWMIC----- 135 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~-----~~~~~-~~~~~~----- 135 (216)
|+.+++.+..+.+|...|++++|+|++++|++++.|+.|++||+.++ .....+.... ..+.+ ....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999876 4444443211 11222 111111
Q ss_pred ------------------eeeecCeEEEEeCC--CCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCe
Q 043942 136 ------------------TSLYDGVTCLSWPG--TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRES 181 (216)
Q Consensus 136 ------------------~~~~~~v~~~~~~~--~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~ 181 (216)
..+...+..++|+| ++.++++++.||.+ ..|...|.+++|+|++++
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 242 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 11336788999998 89999999999987 467889999999999999
Q ss_pred EEEEeCCCcEEEEEcccccceeecCCc
Q 043942 182 LVSVSVDGTARVFEIAEFRRATKAPSY 208 (216)
Q Consensus 182 l~s~~~d~~v~vw~~~~~~~~~~~~~~ 208 (216)
|++++.||.|++||+.+++....+..+
T Consensus 243 l~~~~~dg~v~vwd~~~~~~~~~~~~~ 269 (814)
T 3mkq_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVG 269 (814)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEeecC
Confidence 999999999999999987776655444
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=199.31 Aligned_cols=182 Identities=17% Similarity=0.271 Sum_probs=166.1
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc---------------c--------
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---------------I-------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---------------~-------- 59 (216)
+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..+... +
T Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (425)
T 1r5m_A 138 TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217 (425)
T ss_dssp TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET
T ss_pred CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC
Confidence 56788889999999999999999999999999999999999999988888766543 2
Q ss_pred -------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccce
Q 043942 60 -------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW 132 (216)
Q Consensus 60 -------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
.++.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+..
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------- 287 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG---------- 287 (425)
T ss_dssp TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECC----------
T ss_pred CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecC----------
Confidence 789999999999999989999999999999999999999999999999999999888888876
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+...+.+++|+|++ ++++++.|+.+ ..|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 288 -----~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 288 -----HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp -----CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred -----CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 88999999999999 99999999988 56678999999999999999999999999999998
Q ss_pred cc
Q 043942 199 FR 200 (216)
Q Consensus 199 ~~ 200 (216)
.+
T Consensus 362 ~~ 363 (425)
T 1r5m_A 362 LN 363 (425)
T ss_dssp HH
T ss_pred Cc
Confidence 77
No 44
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-30 Score=207.63 Aligned_cols=188 Identities=22% Similarity=0.301 Sum_probs=161.5
Q ss_pred CCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~ 65 (216)
+++...++.+|...|++++|+|++. .|++++.|++|++||..+++....+.+|...+ .|++|+
T Consensus 136 ~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 3556677889999999999999986 69999999999999999998888888887755 899999
Q ss_pred EEECCCcceeeeee-------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 66 MWNADRGAYLNMFS-------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 66 i~d~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
+||+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+++++....+..... +
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~------------~ 283 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR------------I 283 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS------------G
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC------------c
Confidence 99999998888774 7999999999999999999999999999999999988877754210 3
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
......+.| ++..+++++.|+.+ .+|...|.+++|+|+|++|++++.|+.|++||+.+++....
T Consensus 284 ~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 284 EDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp GGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred cceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 344556666 57788889888876 47889999999999999999999999999999988765443
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-30 Score=193.04 Aligned_cols=195 Identities=18% Similarity=0.304 Sum_probs=164.0
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
....+.+|.+.|++++|+|++++|++++.|+.|++||+.+++....+..|...+ .|+.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 345688999999999999999999999999999999999999999998887765 7999999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceeEEeecccccccccceEEEeeeec--Ce
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD--GV 142 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v 142 (216)
++++.+..+. +...+.+++|+|+++++++++.+ +.|++||+..+.....+..... ........+.. .+
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE----EPIHKIITHEGLDAA 178 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS----SCSEEEECCTTCCCE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc----ceeeeccCCcCccce
Confidence 9999988888 88899999999999999999998 9999999987654322221000 00011112344 89
Q ss_pred EEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
.+++|+|+++++++++.+|.+ ..|...|.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 179 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp EEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 999999999999999999987 567889999999999999999999999999999987766544
No 46
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.7e-31 Score=196.68 Aligned_cols=178 Identities=15% Similarity=0.223 Sum_probs=148.8
Q ss_pred eeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------cCcE
Q 043942 6 WASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------EDST 63 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~~~~ 63 (216)
++.++++|.++|++++|+| ++++|++|+.|++|++||+++++ ....+..|...+ .|++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 4678899999999999986 48999999999999999998873 455555554433 6899
Q ss_pred EEEEECCCcce---eeeeeccCCCeeEEEEcCC-----------------CcEEEEecCCCeEEEEeCCCCc---eeEEe
Q 043942 64 VWMWNADRGAY---LNMFSGHGSGLTCGDFTTD-----------------GKTICTGSDNATLSIWNPKGGE---NFHAI 120 (216)
Q Consensus 64 v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~-----------------~~~l~t~~~d~~i~~wd~~~~~---~~~~~ 120 (216)
|++||++++.. ...+.+|...+.+++|+|+ +++|++|+.|+.|++||++.+. ....+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 99999987532 3556789999999999997 4789999999999999997552 34444
Q ss_pred ecccccccccceEEEeeeecCeEEEEeCCCC----cEEEEecccCeE------------------EeeeCCEEEEEEecC
Q 043942 121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGTS----KYLVTGCVDGKV------------------DGHIDAIQSLSVSAI 178 (216)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~ 178 (216)
.. |...|.+++|+|++ .+|++++.|+.+ ..|...|.+++|+|+
T Consensus 209 ~~---------------h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 273 (316)
T 3bg1_A 209 EA---------------HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT 273 (316)
T ss_dssp BC---------------CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT
T ss_pred cc---------------CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC
Confidence 44 88999999999986 789999999987 245678999999999
Q ss_pred CCeEEEEeCCCcEEEEEccc
Q 043942 179 RESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 179 ~~~l~s~~~d~~v~vw~~~~ 198 (216)
+++|++++.|+.|++|+...
T Consensus 274 g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 274 ANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp TCCEEEEESSSCEEEEEECT
T ss_pred CCEEEEEcCCCeEEEEEECC
Confidence 99999999999999999863
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-32 Score=206.80 Aligned_cols=187 Identities=11% Similarity=0.131 Sum_probs=151.0
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC--ceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR--NLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~--~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
.++.|.++|++++|+|++++|++++.|+.|++||+.++ +....+..|...+ .|++|++||++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 44557789999999999999999999999999999988 6666777776655 78999999999
Q ss_pred Ccc---eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce---eEEeecccccccccceEEEeeeecCeEE
Q 043942 71 RGA---YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 71 ~~~---~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
++. ....+.+|...|.+++|+|++++|++++.|+.|++||+++++. ...+.. .|...|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--------------~h~~~v~~ 151 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR--------------PLRSTILS 151 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS--------------SCCSCEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec--------------ccCCCeEE
Confidence 876 6677788999999999999999999999999999999998763 444432 17889999
Q ss_pred EEeCCCCcEEEEecccCeE----E---------------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 145 LSWPGTSKYLVTGCVDGKV----D---------------------------GHIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i----~---------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
++|+|+++++++++.|+.+ . .|...|.+++|+|++++|++++.|+.|++
T Consensus 152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999999999999999987 1 56778999999999999999999999999
Q ss_pred EEcccccc----eeecCCcc
Q 043942 194 FEIAEFRR----ATKAPSYS 209 (216)
Q Consensus 194 w~~~~~~~----~~~~~~~~ 209 (216)
||+.+++. ...+..+.
T Consensus 232 wd~~~~~~~~~~~~~~~~~~ 251 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQ 251 (377)
T ss_dssp CEECSTTSCEEECCCEECSS
T ss_pred EECCCCCCcceeeEeecCCC
Confidence 99998876 44444444
No 48
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.4e-31 Score=200.22 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=158.2
Q ss_pred eeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCC-------ceEEEEeCCCCcc-----------------c
Q 043942 6 WASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSR-------NLQCTVEGPRGGI-----------------E 60 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~-------~~~~~~~~~~~~~-----------------~ 60 (216)
.+..+.+|.+.|.+++|+| ++++|++|+.|+.|++||+.++ +....+..|...+ .
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 3456778999999999999 8999999999999999999987 5667777766544 7
Q ss_pred CcEEEEEECCCcceeeee--eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEe-ecccccccccceEEEee
Q 043942 61 DSTVWMWNADRGAYLNMF--SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAI-RRSSLEFSLNYWMICTS 137 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 137 (216)
|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------- 217 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP--------------- 217 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS---------------
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC---------------
Confidence 899999999999999888 789999999999999999999999999999999999888877 44
Q ss_pred eecC-eEEEEeCCCCcEEEEe---cccCeE----------------EeeeCCEEEEEEecCCCeEEE-EeCCCcEEEEEc
Q 043942 138 LYDG-VTCLSWPGTSKYLVTG---CVDGKV----------------DGHIDAIQSLSVSAIRESLVS-VSVDGTARVFEI 196 (216)
Q Consensus 138 ~~~~-v~~~~~~~~~~~l~~~---~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s-~~~d~~v~vw~~ 196 (216)
|... +.++.|+|++.+++++ +.++.+ ..|...+..++|+|++++|++ ++.|+.|++|++
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 5554 8999999999999999 788877 245678999999999999875 557999999999
Q ss_pred ccccc
Q 043942 197 AEFRR 201 (216)
Q Consensus 197 ~~~~~ 201 (216)
.+++.
T Consensus 298 ~~~~~ 302 (402)
T 2aq5_A 298 TSEAP 302 (402)
T ss_dssp CSSTT
T ss_pred cCCCc
Confidence 98774
No 49
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.1e-31 Score=199.49 Aligned_cols=202 Identities=15% Similarity=0.187 Sum_probs=153.1
Q ss_pred CCceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEe-------------CCCCcc---------
Q 043942 3 QGDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVE-------------GPRGGI--------- 59 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-------------~~~~~~--------- 59 (216)
.++....+++|.+.|.+++|+| ++++|++++.||.|++||+.+++....+. .|...+
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 111 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD 111 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred cCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC
Confidence 4566778889999999999999 99999999999999999998764433322 122211
Q ss_pred ----------------------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942 60 ----------------------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTC 87 (216)
Q Consensus 60 ----------------------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~ 87 (216)
.++.|++||+++++.+..+.+|...|.+
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred CcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 4567777777777777778889999999
Q ss_pred EEEcCCCc-EEEEecCCCeEEEEeCCCCc-eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 88 GDFTTDGK-TICTGSDNATLSIWNPKGGE-NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 88 ~~~~~~~~-~l~t~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
++|+|+++ .+++++.|+.|++||++++. ....+.................|...|.+++|+|+++++++++.|+.+
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 99999998 58899999999999999776 344442211100000001112278899999999999999999999877
Q ss_pred -----------------------------------------------------------EeeeCCEEEEEEecCCCeEEE
Q 043942 164 -----------------------------------------------------------DGHIDAIQSLSVSAIRESLVS 184 (216)
Q Consensus 164 -----------------------------------------------------------~~~~~~i~~~~~~~~~~~l~s 184 (216)
.+|...|.+++|+|++++|++
T Consensus 272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 237789999999999999999
Q ss_pred EeCCCcEEEEEcccccceee
Q 043942 185 VSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 185 ~~~d~~v~vw~~~~~~~~~~ 204 (216)
++.||.|++|++.+.+.+..
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EETTSCEEEEEECC------
T ss_pred ECCCCeEEEEeCCCCCccCC
Confidence 99999999999998876654
No 50
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.5e-30 Score=190.14 Aligned_cols=184 Identities=22% Similarity=0.349 Sum_probs=154.6
Q ss_pred CCCCceeEEee--ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------
Q 043942 1 INQGDWASEIL--GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------- 59 (216)
Q Consensus 1 l~~g~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------- 59 (216)
+++|++++.++ +|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|....
T Consensus 52 ~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~ 131 (318)
T 4ggc_A 52 ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 131 (318)
T ss_dssp TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEE
T ss_pred CCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCce
Confidence 36788887775 577889999999999999999999999999999999988888776543
Q ss_pred --------------------------------------cCcEEEEEECCCcce----eeeeeccCCCeeEEEEcCCCcEE
Q 043942 60 --------------------------------------EDSTVWMWNADRGAY----LNMFSGHGSGLTCGDFTTDGKTI 97 (216)
Q Consensus 60 --------------------------------------~~~~v~i~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l 97 (216)
.|+.|++||+++++. ......+.+.|.+++++|++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 211 (318)
T 4ggc_A 132 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 211 (318)
T ss_dssp EEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred EeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcE
Confidence 789999999987653 34455678889999999976533
Q ss_pred ---EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec--ccCeE---------
Q 043942 98 ---CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC--VDGKV--------- 163 (216)
Q Consensus 98 ---~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~~i--------- 163 (216)
++++.++.|++||.+......... +...+..+.|+|++..+++++ .|+.+
T Consensus 212 ~~~~~~~~~~~i~lwd~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 212 LATGGGTSDRHIRIWNVCSGACLSAVD----------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp EEEEECTTTCEEEEEETTTCCEEEEEE----------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred EEEEecCCCCEEEEEeccccccccccc----------------ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 467789999999999887766554 677899999999998877654 67776
Q ss_pred -----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 164 -----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 164 -----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.+|...|++++|+|++++|+|++.||+|+|||+.+..
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 5799999999999999999999999999999997654
No 51
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-30 Score=196.10 Aligned_cols=186 Identities=18% Similarity=0.279 Sum_probs=162.9
Q ss_pred CCCceeEEeec-cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEE
Q 043942 2 NQGDWASEILG-HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWM 66 (216)
Q Consensus 2 ~~g~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i 66 (216)
++++....+.. |...|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+ .++.|++
T Consensus 121 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 200 (401)
T 4aez_A 121 DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHH 200 (401)
T ss_dssp TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEE
Confidence 46777777765 88899999999999999999999999999999999999998887765 8999999
Q ss_pred EECC-CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 67 WNAD-RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 67 ~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
||++ ....+..+.+|.+.|.+++|+|+++++++++.|+.|++||+++++....+.. |...|.++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---------------~~~~v~~~ 265 (401)
T 4aez_A 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN---------------HNAAVKAV 265 (401)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC---------------CSSCCCEE
T ss_pred EecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC---------------CcceEEEE
Confidence 9999 5677788899999999999999999999999999999999999888888776 88999999
Q ss_pred EeCCCCc-EEEEec--ccCeE-------------EeeeCCEEEEEEecCCCeEEEE--eCCCcEEEEEcccccce
Q 043942 146 SWPGTSK-YLVTGC--VDGKV-------------DGHIDAIQSLSVSAIRESLVSV--SVDGTARVFEIAEFRRA 202 (216)
Q Consensus 146 ~~~~~~~-~l~~~~--~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~--~~d~~v~vw~~~~~~~~ 202 (216)
+|+|++. ++++++ .|+.+ ..+...|.+++|+|++++++++ +.||.|++|++.+++..
T Consensus 266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~ 340 (401)
T 4aez_A 266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340 (401)
T ss_dssp EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE
T ss_pred EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce
Confidence 9999775 555554 68887 4566789999999999999985 48999999999885443
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-30 Score=211.25 Aligned_cols=179 Identities=21% Similarity=0.330 Sum_probs=151.5
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------------
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------ 59 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------ 59 (216)
+...+.+.+|...|.+++|+|++++|++|+.|+.|++||+.+++....+.+|...+
T Consensus 420 ~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw 499 (694)
T 3dm0_A 420 GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499 (694)
T ss_dssp CEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred ccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 34567889999999999999999999999999999999999998888887776654
Q ss_pred ---------------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEe
Q 043942 60 ---------------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTG 100 (216)
Q Consensus 60 ---------------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~ 100 (216)
.|++|++||+++++....+.+|.+.|++++|+|++++|++|
T Consensus 500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 46777888888777788888999999999999999999999
Q ss_pred cCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------E------
Q 043942 101 SDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------D------ 164 (216)
Q Consensus 101 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------~------ 164 (216)
+.|+.|++||+++++.+..+. +...+.+++|+|++.++++++.++.. .
T Consensus 580 ~~Dg~i~iwd~~~~~~~~~~~----------------~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~ 643 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGKKLYSLE----------------ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDL 643 (694)
T ss_dssp ETTSBCEEEETTTTEEEECCB----------------CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCC
T ss_pred eCCCeEEEEECCCCceEEEec----------------CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhcccc
Confidence 999999999999998877665 45679999999999988887655422 0
Q ss_pred ----------------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 165 ----------------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 165 ----------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.+...+++++|+|+|++|++|+.||.|++|++..
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 644 KAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp C----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0112378999999999999999999999999863
No 53
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.9e-30 Score=190.17 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=154.1
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCc
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDS 62 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~ 62 (216)
+++++.+..+++|.+.|.+++|+|++++|++|+.|++|++||++++ .....+.+|...+ .|+
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 3578889999999999999999999999999999999999999887 4445566655433 799
Q ss_pred EEEEEECCCcceeeeee-ccCCCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 63 TVWMWNADRGAYLNMFS-GHGSGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
+|++||++++.+...+. +|...+..++|+| ++++|++|+.|+.|++||+++++.+..+.. |.
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~---------------h~ 228 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------------HM 228 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC---------------CS
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC---------------CC
Confidence 99999998877665554 4667899999987 778999999999999999999999888887 99
Q ss_pred cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCC--eEEEEeCCCcEEEEEccc
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRE--SLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~--~l~s~~~d~~v~vw~~~~ 198 (216)
..|.+++|+|++++|++++.||.+ ..|...+.+++|+|++. ++++++ |..+.+|++.+
T Consensus 229 ~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 999999999999999999999988 45667899999999875 466665 55577888765
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=1.1e-30 Score=197.11 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=141.8
Q ss_pred cccceEEEEEccCCCEEEE--EcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCccee
Q 043942 13 HKDSFSSLAFSTDGQLLAS--GGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~ 75 (216)
+...+.+++|||||+++++ ++.|++|++||+.+++.+..+..+. .+ .++.+.+|+..+++.+
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~-~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~ 210 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG-EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCI 210 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS-CCCEEEECTTSSEEEEECSSCEEEEETTTCCEE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC-ceEEEEEccCCceEEeccceeEEEEEeccCcce
Confidence 3456889999999998765 4478999999999999888886432 22 5677888888877665
Q ss_pred e--eeeccCCCeeEEEEcCCCcEEEEecCCC----eEEEEeCCCCcee----EEeecccccccccceEEEeeeecCeEEE
Q 043942 76 N--MFSGHGSGLTCGDFTTDGKTICTGSDNA----TLSIWNPKGGENF----HAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 76 ~--~~~~~~~~v~~~~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
. ....|...|.+++|+|+++.+++++.|+ .++.||+...... ..+.. |...|+++
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~V~~~ 275 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN---------------RFKGITSM 275 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES---------------SCSCEEEE
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC---------------CCCCeEeE
Confidence 4 3456888999999999999999998887 6888998866542 22332 78899999
Q ss_pred EeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 146 SWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
+|+|+|++|++|+.|+.| .+|..+|++++|+|||++|+++|.|++|+||++...
T Consensus 276 ~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 276 DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999988 468899999999999999999999999999999653
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=1.4e-29 Score=196.32 Aligned_cols=185 Identities=20% Similarity=0.311 Sum_probs=162.7
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------- 59 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------- 59 (216)
+++++++.++.+|.+.|.+++|+|++ +|++|+.||.|++||+.+++....+..|...+
T Consensus 149 ~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~ 227 (464)
T 3v7d_B 149 SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 227 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTS
T ss_pred CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCC
Confidence 35788899999999999999999987 99999999999999999988777776554432
Q ss_pred ------------------------------------------------------------cCcEEEEEECCCcceeeeee
Q 043942 60 ------------------------------------------------------------EDSTVWMWNADRGAYLNMFS 79 (216)
Q Consensus 60 ------------------------------------------------------------~~~~v~i~d~~~~~~~~~~~ 79 (216)
.|+.|++||+++++.+..+.
T Consensus 228 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~ 307 (464)
T 3v7d_B 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307 (464)
T ss_dssp CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 36777888888788888888
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
+|...|.+++|+|+++.+++|+.|+.|++||+++++.+..+.. |...|.++.|+ +.++++++.
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---------------h~~~v~~~~~~--~~~l~s~s~ 370 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG---------------HTALVGLLRLS--DKFLVSAAA 370 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC---------------CSSCEEEEEEC--SSEEEEEET
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC---------------CCCcEEEEEEc--CCEEEEEeC
Confidence 9999999999999999999999999999999999999988877 89999999997 589999999
Q ss_pred cCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 160 DGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 160 ~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
||.+ ..+...+..++|+|+++++++++ |+.|++||+++++.+..
T Consensus 371 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 371 DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp TSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred CCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 9988 34556778889999999999998 99999999999887764
No 56
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=2.1e-29 Score=187.11 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=157.9
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
....+..|...|.+++|+|++++|++++.|+.|++||+.+++....+..+...+ .++.|++||+
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 133 IKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 566788899999999999999999999999999999999999888888776654 7899999999
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
++++.+..+. +...+.+++|+|+++++++++.|+.|++||+++++.. .+.. |...+.+++|+|
T Consensus 213 ~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~---------------~~~~v~~~~~~~ 275 (337)
T 1gxr_A 213 REGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL---------------HESCVLSLKFAY 275 (337)
T ss_dssp TTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC---------------CSSCEEEEEECT
T ss_pred CCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC---------------CccceeEEEECC
Confidence 9998887775 7788999999999999999999999999999987654 3333 888999999999
Q ss_pred CCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 150 TSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 150 ~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
+++++++++.||.+ ..|...|.+++|+|++++|++++.||.|++|++.
T Consensus 276 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 99999999999988 4678899999999999999999999999999974
No 57
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.98 E-value=1.6e-30 Score=199.13 Aligned_cols=183 Identities=19% Similarity=0.208 Sum_probs=156.8
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~ 65 (216)
++++....+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+..|...+ .|+.|+
T Consensus 127 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 4667777778999999999999999999999999999999999999999998887765 789999
Q ss_pred EEECCCcceeeeeecc---C---------------------CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942 66 MWNADRGAYLNMFSGH---G---------------------SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR 121 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~---~---------------------~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 121 (216)
+||+++++.+..+..| . ..+.+++|+|+++++++++.|+.|++||+++++....+.
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 9999999988887753 2 344555568899999999999999999999988776664
Q ss_pred cccccccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------Ee-eeCCEEEEEEecCCCeEEE
Q 043942 122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DG-HIDAIQSLSVSAIRESLVS 184 (216)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~-~~~~i~~~~~~~~~~~l~s 184 (216)
. .|...+.+++|+|++. ++++++.||.+ .. |...|..+. .+++++|++
T Consensus 287 ~--------------~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s 351 (420)
T 3vl1_A 287 S--------------KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVS 351 (420)
T ss_dssp C--------------TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEE
T ss_pred c--------------ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEE
Confidence 3 1678899999999998 99999999988 23 566777775 468889999
Q ss_pred EeCCCcEEEEEcccc
Q 043942 185 VSVDGTARVFEIAEF 199 (216)
Q Consensus 185 ~~~d~~v~vw~~~~~ 199 (216)
++.|+.|++|++...
T Consensus 352 ~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 352 SGFDTSIKLDIISDP 366 (420)
T ss_dssp ETTTEEEEEEEECCT
T ss_pred ecCCccEEEEeccCC
Confidence 999999999999874
No 58
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=5.8e-30 Score=192.79 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=160.2
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
.+..|.++|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...+ .|+.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 355699999999999999999999999999999999987 788888877655 78999999998
Q ss_pred Ccceeee--eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee---EEeecccccccccceEEEeeeecCeEEE
Q 043942 71 RGAYLNM--FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 71 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
+++.... +..|...|.+++|+|+++++++++.|+.|++||++.+... ..+.. .|...|.++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~--------------~~~~~i~~~ 148 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK--------------PIRSTVLSL 148 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT--------------TCCSCEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec--------------ccCCCeeEE
Confidence 8765433 4668899999999999999999999999999999987642 22211 178899999
Q ss_pred EeCCCCcEEEEecccCeE---E-----------------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 146 SWPGTSKYLVTGCVDGKV---D-----------------------------GHIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i---~-----------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
+|+|+++++++++.|+.+ . .|...|.+++|+|++++|++++.|+.|++
T Consensus 149 ~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 228 (372)
T 1k8k_C 149 DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228 (372)
T ss_dssp EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEE
Confidence 999999999999998876 1 45678999999999999999999999999
Q ss_pred EEcccccceeecCCcc
Q 043942 194 FEIAEFRRATKAPSYS 209 (216)
Q Consensus 194 w~~~~~~~~~~~~~~~ 209 (216)
||+++++....+..+.
T Consensus 229 ~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 229 ADADKKMAVATLASET 244 (372)
T ss_dssp EEGGGTTEEEEEECSS
T ss_pred EECCCCceeEEEccCC
Confidence 9999988777665554
No 59
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.5e-30 Score=193.13 Aligned_cols=182 Identities=15% Similarity=0.223 Sum_probs=155.1
Q ss_pred CCceeEEeeccccceEEEEEccC--CCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------c
Q 043942 3 QGDWASEILGHKDSFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------E 60 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~ 60 (216)
+++.+..+.+|...|.+++|+++ +++|++++.|+.|++||+.+++ ....+..+...+ .
T Consensus 44 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 44 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC
Confidence 45677888999999999999987 8999999999999999999886 555555544333 7
Q ss_pred CcEEEEEECCCcc--eeeeeeccCCCeeEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCcee----EEee
Q 043942 61 DSTVWMWNADRGA--YLNMFSGHGSGLTCGDFTT-------------DGKTICTGSDNATLSIWNPKGGENF----HAIR 121 (216)
Q Consensus 61 ~~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~t~~~d~~i~~wd~~~~~~~----~~~~ 121 (216)
++.|++||++++. ....+..|...|.+++|+| ++.++++++.|+.|++||++++... ..+.
T Consensus 124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence 8999999998773 4456678999999999999 6999999999999999999876533 3333
Q ss_pred cccccccccceEEEeeeecCeEEEEeCCC---CcEEEEecccCeE-------------------EeeeCCEEEEEEecCC
Q 043942 122 RSSLEFSLNYWMICTSLYDGVTCLSWPGT---SKYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIR 179 (216)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~ 179 (216)
. |...|.+++|+|+ +.++++++.||.+ ..|...|.+++|+|++
T Consensus 204 ~---------------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 268 (379)
T 3jrp_A 204 G---------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG 268 (379)
T ss_dssp C---------------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS
T ss_pred c---------------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC
Confidence 3 8899999999999 8999999999987 2377889999999999
Q ss_pred CeEEEEeCCCcEEEEEcccc
Q 043942 180 ESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 180 ~~l~s~~~d~~v~vw~~~~~ 199 (216)
++|++++.||.|++|++...
T Consensus 269 ~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 269 NVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CCEEEEESSSSEEEEEEEET
T ss_pred CEEEEecCCCcEEEEeCCCC
Confidence 99999999999999999854
No 60
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=4.9e-31 Score=198.04 Aligned_cols=194 Identities=19% Similarity=0.227 Sum_probs=155.3
Q ss_pred CCCCceeEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEE---eCCCCcc----------------c
Q 043942 1 INQGDWASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTV---EGPRGGI----------------E 60 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~---~~~~~~~----------------~ 60 (216)
+++++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+.+++....+ ..+...+ .
T Consensus 102 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 181 (366)
T 3k26_A 102 PITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM 181 (366)
T ss_dssp TTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEET
T ss_pred chhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecC
Confidence 356888999999999999999999 8999999999999999999999988888 4555544 7
Q ss_pred CcEEEEEECCCcceeeeeec----------------------------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 61 DSTVWMWNADRGAYLNMFSG----------------------------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
|+.|++||+++++....+.. |...|.+++|+ ++++++++.|+.|++||++
T Consensus 182 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~ 259 (366)
T 3k26_A 182 DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPG 259 (366)
T ss_dssp TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEES
T ss_pred CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCC
Confidence 89999999998765544443 89999999998 7799999999999999998
Q ss_pred CCceeEEeecccccccccceEEEeeeecCeEEEEeCCC--CcEEEEecccCeE------------------Eee--eCCE
Q 043942 113 GGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT--SKYLVTGCVDGKV------------------DGH--IDAI 170 (216)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~~~i------------------~~~--~~~i 170 (216)
++........ ..............|...|.+++|+|+ +++|++++.||.+ ..| ...|
T Consensus 260 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v 338 (366)
T 3k26_A 260 KMEDDIDKIK-PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAI 338 (366)
T ss_dssp STTCCGGGCC-TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCE
T ss_pred Cccccccccc-cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCce
Confidence 7754100000 000000011112237888999999999 9999999999988 233 6889
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 171 QSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.+++|+|++++|++++.||.|++||+.
T Consensus 339 ~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 339 RQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999999999999999985
No 61
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-31 Score=206.49 Aligned_cols=176 Identities=12% Similarity=0.052 Sum_probs=147.1
Q ss_pred EEeeccccceEEEEEccC------CCEEEEEcCCCcEEEEECCCCce-----------EEEEeCCCCcc-----------
Q 043942 8 SEILGHKDSFSSLAFSTD------GQLLASGGFHGLVQNRDTSSRNL-----------QCTVEGPRGGI----------- 59 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~------~~~l~s~~~d~~v~vwd~~~~~~-----------~~~~~~~~~~~----------- 59 (216)
.++.+|.+.|++++|+|+ +.+||+++.||+|++||+.+++. ...+.+|...+
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l 280 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV 280 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence 346678899999999996 57999999999999999987632 12444444333
Q ss_pred ----cCcEEEEEECCCc-ceeeeeeccCCCeeEE--EEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942 60 ----EDSTVWMWNADRG-AYLNMFSGHGSGLTCG--DFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY 131 (216)
Q Consensus 60 ----~~~~v~i~d~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 131 (216)
.|++|++||++++ .+...+.+|...|.++ +|+|++ .+|++|+.|++|++||+++++....+..
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~--------- 351 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS--------- 351 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE---------
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc---------
Confidence 8999999999976 4455688999999999 578887 8999999999999999998876655543
Q ss_pred eEEEeeee--cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 132 WMICTSLY--DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 132 ~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
|. ..+.+++|+|++..+++++.|+.+ .+|...|++++|+|++++|++|+.|++|++||
T Consensus 352 ------~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 352 ------RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp ------ECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred ------ccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 43 247899999999999999999877 57889999999999999999999999999999
Q ss_pred ccc
Q 043942 196 IAE 198 (216)
Q Consensus 196 ~~~ 198 (216)
+..
T Consensus 426 ~~~ 428 (524)
T 2j04_B 426 AAR 428 (524)
T ss_dssp SCS
T ss_pred chH
Confidence 764
No 62
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.1e-29 Score=193.83 Aligned_cols=186 Identities=17% Similarity=0.318 Sum_probs=158.5
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCcc----------------cCcE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGGI----------------EDST 63 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~----------------~~~~ 63 (216)
+++++.+..+.+|...|.+++|+ +++|++++.|+.|++||+. .......+..|...+ .|+.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 163 VESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 35678889999999999999994 5799999999999999999 456677777776655 7899
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
|++||+++++.+..+..|...|.+++|+|++. ++++++ .|+.|++||+++++....+. +..
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~----------------~~~ 304 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD----------------AGS 304 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE----------------CSS
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe----------------CCC
Confidence 99999999999999999999999999999764 566654 79999999999998888776 567
Q ss_pred CeEEEEeCCCCcEEEE--ecccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 141 GVTCLSWPGTSKYLVT--GCVDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~--~~~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.+.+++|+|+++++++ |+.||.+ .+|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 8999999999999998 4478887 467889999999999999999999999999999987765
Q ss_pred ee
Q 043942 203 TK 204 (216)
Q Consensus 203 ~~ 204 (216)
..
T Consensus 385 ~~ 386 (401)
T 4aez_A 385 KR 386 (401)
T ss_dssp --
T ss_pred cc
Confidence 43
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=8.1e-31 Score=200.69 Aligned_cols=194 Identities=15% Similarity=0.186 Sum_probs=157.8
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
...+..| ..+....|+|++++|++++.|+.|++||+.+++....+..|...+ .|+.|++||++
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 3334444 445556789999999999999999999999988877777776655 78999999999
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccc-cceEEE--------eeeecC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSL-NYWMIC--------TSLYDG 141 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~~~ 141 (216)
+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+......... ...... ..+...
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 99999999999999999999999999999999999999999999988887642211000 000000 013466
Q ss_pred eEEEEeCCCCcEEEEecccCeE---------------EeeeCCEEEEEEecCCC-eEEEEeCCCcEEEEEcccccc
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKV---------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v~vw~~~~~~~ 201 (216)
+.+++|+|+++++++++.||.+ ..|...|.+++|+|+++ +|++++.||.|++||+++++.
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 7778889999999999999988 34678899999999998 999999999999999998754
No 64
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=188.96 Aligned_cols=208 Identities=15% Similarity=0.271 Sum_probs=160.2
Q ss_pred CceeEEeeccccceEEEEEccC---CCEEEEEcCCCcEEEEECCC-CceE-EEEeCCCCcc----------------cCc
Q 043942 4 GDWASEILGHKDSFSSLAFSTD---GQLLASGGFHGLVQNRDTSS-RNLQ-CTVEGPRGGI----------------EDS 62 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vwd~~~-~~~~-~~~~~~~~~~----------------~~~ 62 (216)
.+.+..+++|.+.|++++|+|+ |++|++++.||.|++||+.+ ++.. ..+..|...+ .|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 4567788899999999999998 69999999999999999997 5444 6666666655 799
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEE--cCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccc----cccceEE--
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDF--TTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEF----SLNYWMI-- 134 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~-- 134 (216)
.|++||+++++.+. +..|...|.+++| +|+++++++++.|+.|++||+++++.+..+....... .......
T Consensus 109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT 187 (368)
T ss_dssp EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred cEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence 99999999988766 5569999999999 8999999999999999999999988777666432100 0000000
Q ss_pred --------------------EeeeecCeEEEEeCCCCcE----EEEecccCeE-----------------EeeeC-----
Q 043942 135 --------------------CTSLYDGVTCLSWPGTSKY----LVTGCVDGKV-----------------DGHID----- 168 (216)
Q Consensus 135 --------------------~~~~~~~v~~~~~~~~~~~----l~~~~~~~~i-----------------~~~~~----- 168 (216)
.......+.++.+.++... +++++.|+.+ ..|..
T Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 0012233455555444433 8999999977 23333
Q ss_pred -------CEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeE
Q 043942 169 -------AIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKL 212 (216)
Q Consensus 169 -------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~ 212 (216)
+|.+++|+|++++|++++.||.|++||+.+++....+..+...+
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 318 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI 318 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred cccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence 79999999999999999999999999999988887777655443
No 65
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=9.5e-31 Score=201.65 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=115.0
Q ss_pred eEEeeccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEEEEE
Q 043942 7 ASEILGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTVWMW 67 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v~i~ 67 (216)
...+.+|.+.|++++|+| ++++|++++.|++|++||++++........+.... .++.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 445568999999999998 68999999999999999998765433332222111 78999999
Q ss_pred ECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 68 NADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 68 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
|++ ++.+..+.+|...|++++|+|+++ ++++|+.|+.|++||+++.+....+... .+|...|++++
T Consensus 237 d~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~------------~~h~~~v~~~~ 303 (435)
T 4e54_B 237 NMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS------------LPHRHPVNAAC 303 (435)
T ss_dssp ESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC------------CBCSSCEEECC
T ss_pred ccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe------------eecccccccee
Confidence 997 456778889999999999999876 7889999999999999987654333210 12788899999
Q ss_pred eCCCCcEEEEecccCeE
Q 043942 147 WPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i 163 (216)
|+|++++|++++.|+.+
T Consensus 304 ~spdg~~l~s~~~D~~i 320 (435)
T 4e54_B 304 FSPDGARLLTTDQKSEI 320 (435)
T ss_dssp BCTTSSEEEEEESSSCE
T ss_pred ECCCCCeeEEEcCCCEE
Confidence 99999999999999877
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=191.96 Aligned_cols=189 Identities=14% Similarity=0.196 Sum_probs=152.9
Q ss_pred CCCc-eeEEeeccccceEEEE------EccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCC----------------
Q 043942 2 NQGD-WASEILGHKDSFSSLA------FSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRG---------------- 57 (216)
Q Consensus 2 ~~g~-~~~~~~~h~~~v~~~~------~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~---------------- 57 (216)
++++ ++..+.+|...|.+++ |+|++++|++++.|+.|++||+.+++ ....+..+..
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYN 177 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccC
Confidence 3455 7888999999999995 47899999999999999999999876 5566544332
Q ss_pred ---cc-----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC---CCcEEEEecCCCeEEEEeCCCCceeEEeeccccc
Q 043942 58 ---GI-----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT---DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE 126 (216)
Q Consensus 58 ---~~-----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~ 126 (216)
.. .++.|++||+++++.... ..|...|.+++|+| +++++++++.|+.|++||+++++....+..
T Consensus 178 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 252 (357)
T 3i2n_A 178 QEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS---- 252 (357)
T ss_dssp -CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE----
T ss_pred CCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee----
Confidence 00 789999999999887544 55889999999999 999999999999999999987665444331
Q ss_pred ccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------------------------EeeeCCEEE
Q 043942 127 FSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------------------------DGHIDAIQS 172 (216)
Q Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------------------------~~~~~~i~~ 172 (216)
.....|...|.+++|+|+++ ++++++.||.+ ..|..+|.+
T Consensus 253 ------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 326 (357)
T 3i2n_A 253 ------VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISS 326 (357)
T ss_dssp ------EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEE
T ss_pred ------eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeE
Confidence 01112889999999999998 89999999987 126778999
Q ss_pred EEEecCCCeEE-EEeCCCcEEEEEcccccc
Q 043942 173 LSVSAIRESLV-SVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 173 ~~~~~~~~~l~-s~~~d~~v~vw~~~~~~~ 201 (216)
++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus 327 ~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 327 LDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 99999999998 899999999999987653
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.5e-30 Score=196.67 Aligned_cols=191 Identities=6% Similarity=-0.039 Sum_probs=141.3
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc----------------cCcEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI----------------EDSTVW 65 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~----------------~~~~v~ 65 (216)
+++..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...+ .|+.|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 125 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS 125 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence 5777888999999999999999999999999999999999876 555555555544 789999
Q ss_pred EEECCCcc---eeeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccc---ccceEEEeee
Q 043942 66 MWNADRGA---YLNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS---LNYWMICTSL 138 (216)
Q Consensus 66 i~d~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 138 (216)
+||+++++ ....+.. |...|.+++|+|++++|++++.|+.|++||++.+.............. ....... .|
T Consensus 126 iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 204 (377)
T 3dwl_C 126 VCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS 204 (377)
T ss_dssp ECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC
T ss_pred EEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC
Confidence 99999876 3667777 999999999999999999999999999999964331111000000000 0000001 38
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
...|.+++|+|++++|++++.|+.+ ..|..+|.+++|+|++++|++++.|+.+ +|+..
T Consensus 205 ~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 205 GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 8999999999999999999999988 4667789999999999999998866655 67665
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2.4e-29 Score=215.05 Aligned_cols=198 Identities=20% Similarity=0.288 Sum_probs=171.0
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDST 63 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~ 63 (216)
.+++.+.++.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+..|...+ .|+.
T Consensus 645 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 645 ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 5788899999999999999999999999999999999999999999999998877654 6899
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc------------------c
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS------------------L 125 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~------------------~ 125 (216)
|++||+++++.+..+.+|.+.|++++|+|+++++++++.|+.|++||+.+++....+.... .
T Consensus 725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 9999999999999999999999999999999999999999999999999887766554211 0
Q ss_pred cccccc----------------------eEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCC
Q 043942 126 EFSLNY----------------------WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDA 169 (216)
Q Consensus 126 ~~~~~~----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~ 169 (216)
.+.+.. .....+|...+.+++|+|+++++++++.++.+ .+|...
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence 111111 01112467889999999999999999999987 578899
Q ss_pred EEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 170 IQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 170 i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|.+++|+|++++|++++.|+.|++|++.+.
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 999999999999999999999999998753
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-30 Score=197.48 Aligned_cols=189 Identities=14% Similarity=0.176 Sum_probs=153.6
Q ss_pred CCceeEEe-eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCC---Cc---eEEEEeCCCCcc---------------
Q 043942 3 QGDWASEI-LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSS---RN---LQCTVEGPRGGI--------------- 59 (216)
Q Consensus 3 ~g~~~~~~-~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~---~~---~~~~~~~~~~~~--------------- 59 (216)
+|+++.++ ++|.+.|++++|+| ++++|++|+.|+.|++||+.+ +. ....+. |...+
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCCCEEEEE
Confidence 57788889 88999999999999 999999999999999999865 21 111111 11111
Q ss_pred ------------------------------------------------------------cCcEEEEEECCCcceeeeee
Q 043942 60 ------------------------------------------------------------EDSTVWMWNADRGAYLNMFS 79 (216)
Q Consensus 60 ------------------------------------------------------------~~~~v~i~d~~~~~~~~~~~ 79 (216)
.|+.|++||+++++.+..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 45777778887788888888
Q ss_pred c--cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC----CCCcE
Q 043942 80 G--HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP----GTSKY 153 (216)
Q Consensus 80 ~--~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~ 153 (216)
+ |...|++++|+|++++|++|+.|+.|++||+++++.+..+... +...|.+++|+ |++.+
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~s~~~~~ 275 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFG--------------DHAPITHVEVCQFYGKNSVI 275 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCT--------------TCEEEEEEEECTTTCTTEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecC--------------CCCceEEEEeccccCCCccE
Confidence 7 8899999999999999999999999999999999888877521 66789999554 56889
Q ss_pred EEEecccCeE--------------E--------------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 154 LVTGCVDGKV--------------D--------------------------GHIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 154 l~~~~~~~~i--------------~--------------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
+++++.|+.+ . .|...|.+++|+ ++++|++++.|+.|++
T Consensus 276 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~ 354 (437)
T 3gre_A 276 VVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVM 354 (437)
T ss_dssp EEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEE
T ss_pred EEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEE
Confidence 9999999987 1 156678999999 7799999999999999
Q ss_pred EEcccccceeecCC
Q 043942 194 FEIAEFRRATKAPS 207 (216)
Q Consensus 194 w~~~~~~~~~~~~~ 207 (216)
||+.+++....+..
T Consensus 355 wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 355 FSLNELSSSKAVIS 368 (437)
T ss_dssp EETTCGGGCEEEEC
T ss_pred EECCCcccceEEec
Confidence 99999887766554
No 70
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.7e-29 Score=188.04 Aligned_cols=194 Identities=12% Similarity=0.057 Sum_probs=134.0
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWM 66 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i 66 (216)
.+.+++.++++|.+.|++++|+|||++|++|+.++ +++||..+++.......+.... .+++|++
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 34566777789999999999999999999998775 7899998876655443221111 6789999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCC-ceeEEee-----------------cc---cc
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGG-ENFHAIR-----------------RS---SL 125 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~-----------------~~---~~ 125 (216)
||.++++.+..+. +...|.+++++++. ++++ .|+.|++||+.++ +.+..+. .. .+
T Consensus 86 Wd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v 161 (355)
T 3vu4_A 86 WDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQI 161 (355)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCE
T ss_pred EECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEE
Confidence 9999999988887 66789999998763 2222 2455666666554 2111110 00 00
Q ss_pred -ccccc------------------c-eEEEeeeecCeEEEEeCCCCcEEEEecccCe-E--------------E-e-eeC
Q 043942 126 -EFSLN------------------Y-WMICTSLYDGVTCLSWPGTSKYLVTGCVDGK-V--------------D-G-HID 168 (216)
Q Consensus 126 -~~~~~------------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~-i--------------~-~-~~~ 168 (216)
..+.. . .....+|...|.+++|+|++++|++++.|+. + . + |..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 00000 0 2334458999999999999999999999997 7 3 3 889
Q ss_pred CEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 169 AIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 169 ~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
.|.+++|+|++++|++++.|++|++||++...
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 99999999999999999999999999997653
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=8.4e-29 Score=211.72 Aligned_cols=190 Identities=19% Similarity=0.282 Sum_probs=170.4
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~ 70 (216)
...+.+|.+.|++++|+|+|++|++|+.||.|++||..+++.+..+..|...+ .|+.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34677999999999999999999999999999999999999999998887765 78999999999
Q ss_pred CcceeeeeeccCCCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
+++.+..+.+|...|.+++|+| ++..+++|+.|+.|++||+++++....+.. |...|.+++|+
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~---------------h~~~v~~~~~s 752 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG---------------HTNSVNHCRFS 752 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC---------------CSSCEEEEEEC
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC---------------CCCCEEEEEEe
Confidence 9999999999999999999999 556899999999999999999998888876 88899999999
Q ss_pred CCCcEEEEecccCeE-----------------------------------------------------------------
Q 043942 149 GTSKYLVTGCVDGKV----------------------------------------------------------------- 163 (216)
Q Consensus 149 ~~~~~l~~~~~~~~i----------------------------------------------------------------- 163 (216)
|+++++++++.||.+
T Consensus 753 p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 753 PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832 (1249)
T ss_dssp SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEE
T ss_pred cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCce
Confidence 999999999988877
Q ss_pred ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCccee
Q 043942 164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFK 211 (216)
Q Consensus 164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~ 211 (216)
.+|...|.+++|+|+++++++++.|+.|++|++.+++....+..|...
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence 045678889999999999999999999999999988877766665543
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3e-29 Score=190.57 Aligned_cols=188 Identities=18% Similarity=0.204 Sum_probs=161.1
Q ss_pred eeEEeeccccceEEEEEccC----C---CEEEEEcCCCcEEEEECCCCce-----EEEEeCCC-----C-----------
Q 043942 6 WASEILGHKDSFSSLAFSTD----G---QLLASGGFHGLVQNRDTSSRNL-----QCTVEGPR-----G----------- 57 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~----~---~~l~s~~~d~~v~vwd~~~~~~-----~~~~~~~~-----~----------- 57 (216)
++..+.+|...|.+++|+|+ + ++|++++.|+.|++||+.+++. ...+..+. .
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 68889999999999999999 9 9999999999999999988775 66665542 1
Q ss_pred -----c-c----cCcEEEEEECCC------cceee-----eee-------ccCCCeeEEEEcCCCcEEEEecCCCeEEEE
Q 043942 58 -----G-I----EDSTVWMWNADR------GAYLN-----MFS-------GHGSGLTCGDFTTDGKTICTGSDNATLSIW 109 (216)
Q Consensus 58 -----~-~----~~~~v~i~d~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~w 109 (216)
. + .++.|++||+++ ++.+. .+. .|...|.+++|+|++ .+++++.|+.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 1 1 678899999998 66666 664 488899999999999 99999999999999
Q ss_pred eCCCCceeEEeecccccccccceEEEeee---ecCeEEEEeCCCCcEEEEeccc---CeE--------------Ee----
Q 043942 110 NPKGGENFHAIRRSSLEFSLNYWMICTSL---YDGVTCLSWPGTSKYLVTGCVD---GKV--------------DG---- 165 (216)
Q Consensus 110 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~---~~i--------------~~---- 165 (216)
|+++++.+..+... .+| ...+.+++|+|++++|++++.| +.+ ..
T Consensus 213 d~~~~~~~~~~~~~------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 213 ELSTLRPLYNFESQ------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp ETTTTEEEEEEECC------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred ECCCCceeEEEecc------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 99998887777530 014 7889999999999999999999 877 34
Q ss_pred ---------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 166 ---------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 166 ---------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
|...|.+++|+|++++|++++.|+.|++||+.+++....+.
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence 88999999999999999999999999999999988777666
No 73
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1e-28 Score=184.91 Aligned_cols=182 Identities=15% Similarity=0.260 Sum_probs=153.8
Q ss_pred CCceeEEe-eccccceEEEEEccC---CCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCCcc------------------
Q 043942 3 QGDWASEI-LGHKDSFSSLAFSTD---GQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRGGI------------------ 59 (216)
Q Consensus 3 ~g~~~~~~-~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~------------------ 59 (216)
+++..... .+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....+..|...+
T Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l 132 (357)
T 3i2n_A 53 HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI 132 (357)
T ss_dssp SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE
T ss_pred CCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE
Confidence 44444332 378999999999998 6999999999999999999887 777776665532
Q ss_pred ----cCcEEEEEECCCcc-eeeeeeccCC----CeeEEE----EcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc
Q 043942 60 ----EDSTVWMWNADRGA-YLNMFSGHGS----GLTCGD----FTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE 126 (216)
Q Consensus 60 ----~~~~v~i~d~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~ 126 (216)
.|+.|++||++++. ++..+..|.+ .+.+++ |+|+++++++++.|+.|++||+++++......
T Consensus 133 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----- 207 (357)
T 3i2n_A 133 VTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN----- 207 (357)
T ss_dssp EEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-----
T ss_pred EEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-----
Confidence 78999999999886 6777766554 788888 78899999999999999999999888755433
Q ss_pred ccccceEEEeeeecCeEEEEeCC---CCcEEEEecccCeE--------------E-----eeeCCEEEEEEecCCC-eEE
Q 043942 127 FSLNYWMICTSLYDGVTCLSWPG---TSKYLVTGCVDGKV--------------D-----GHIDAIQSLSVSAIRE-SLV 183 (216)
Q Consensus 127 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~~~i--------------~-----~~~~~i~~~~~~~~~~-~l~ 183 (216)
+...+.+++|+| ++.++++++.||.+ . .|...|.+++|+|+++ +|+
T Consensus 208 -----------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 208 -----------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFL 276 (357)
T ss_dssp -----------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred -----------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEE
Confidence 788999999999 99999999999988 2 7889999999999998 899
Q ss_pred EEeCCCcEEEEEccccc
Q 043942 184 SVSVDGTARVFEIAEFR 200 (216)
Q Consensus 184 s~~~d~~v~vw~~~~~~ 200 (216)
+++.||.|++||++...
T Consensus 277 ~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp EEETTSEEEEEEEECCS
T ss_pred EEeCCCcEEEeecCCCc
Confidence 99999999999998654
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=5.3e-29 Score=187.51 Aligned_cols=177 Identities=10% Similarity=0.061 Sum_probs=151.3
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc----------------cCcEEEEE
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~~v~i~ 67 (216)
.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+ ..+...+ .++.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 78889999999999999999999999999999999999888755544 2333322 78999999
Q ss_pred ECCCcce---e-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC------------------CCceeEEeecccc
Q 043942 68 NADRGAY---L-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK------------------GGENFHAIRRSSL 125 (216)
Q Consensus 68 d~~~~~~---~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~------------------~~~~~~~~~~~~~ 125 (216)
|++++.. . .....|...|.+++|+|+++++++++.|+.|++||++ .++.+..+..
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--- 200 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC---
Confidence 9987763 2 3335688999999999999999999999999999964 4555555554
Q ss_pred cccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcE
Q 043942 126 EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTA 191 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v 191 (216)
|...+.+++|+|+++++++++.|+.+ ..|..+|.+++|+|++++|+++ .|+.|
T Consensus 201 ------------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 267 (372)
T 1k8k_C 201 ------------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFP 267 (372)
T ss_dssp ------------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred ------------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence 88899999999999999999999988 5677899999999999988877 89999
Q ss_pred EEEEccc
Q 043942 192 RVFEIAE 198 (216)
Q Consensus 192 ~vw~~~~ 198 (216)
++|++.+
T Consensus 268 ~i~~~~~ 274 (372)
T 1k8k_C 268 VLFTYDS 274 (372)
T ss_dssp EEEEEET
T ss_pred EEEEccC
Confidence 9999987
No 75
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-30 Score=200.00 Aligned_cols=176 Identities=11% Similarity=0.073 Sum_probs=143.7
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeCCCC--------------cc-----cCcEEEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEGPRG--------------GI-----EDSTVWM 66 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~--------------~~-----~~~~v~i 66 (216)
..++.+|...|++++|+++ ..|++|+.||+|++||+++++ ....+..|.. .. .|++|++
T Consensus 259 ~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp SEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred eEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 4578899999999999986 489999999999999998653 2222322221 11 7999999
Q ss_pred EECCCcceeeeeeccCC--CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 67 WNADRGAYLNMFSGHGS--GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
||+++++....+.+|.. .|.+++|+|+++.+++++.|++|++||++++..+..+.. |...|++
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g---------------H~~~V~s 402 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS---------------RETTITA 402 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE---------------CSSCEEE
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec---------------CCCceEE
Confidence 99999888777777754 588999999999999999999999999999887777665 8888888
Q ss_pred EEeCCCCcEEEEecccCeE----------------------------------------------------------Eee
Q 043942 145 LSWPGTSKYLVTGCVDGKV----------------------------------------------------------DGH 166 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i----------------------------------------------------------~~~ 166 (216)
++|+|++++|++|+.|+.+ .+|
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh 482 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH 482 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------C
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCC
Confidence 8888888888888877755 345
Q ss_pred eCCEEEEEEecCCC---eEEEEeCCCcEEEEEccc
Q 043942 167 IDAIQSLSVSAIRE---SLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 167 ~~~i~~~~~~~~~~---~l~s~~~d~~v~vw~~~~ 198 (216)
..+|.+++|+|+++ .+++|+.||.|+||++..
T Consensus 483 ~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 483 GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 67889999999964 899999999999999864
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.4e-29 Score=190.33 Aligned_cols=192 Identities=17% Similarity=0.146 Sum_probs=153.6
Q ss_pred eEEeecc-----ccceEEEEEc----cCCCE-EEEEcCCCcEEEEECCC------CceEE-----EEeC-------CCCc
Q 043942 7 ASEILGH-----KDSFSSLAFS----TDGQL-LASGGFHGLVQNRDTSS------RNLQC-----TVEG-------PRGG 58 (216)
Q Consensus 7 ~~~~~~h-----~~~v~~~~~s----~~~~~-l~s~~~d~~v~vwd~~~------~~~~~-----~~~~-------~~~~ 58 (216)
+..+..| ...|.+++|+ |++++ |++++.|+.|++||+.+ ++.+. .+.. +...
T Consensus 109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (397)
T 1sq9_A 109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 188 (397)
T ss_dssp EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence 7788888 5899999999 99999 99999999999999988 65554 5532 2222
Q ss_pred c---------------cCcEEEEEECCCcceeeeeec---c---CCCeeEEEEcCCCcEEEEecCC---CeEEEEeCCCC
Q 043942 59 I---------------EDSTVWMWNADRGAYLNMFSG---H---GSGLTCGDFTTDGKTICTGSDN---ATLSIWNPKGG 114 (216)
Q Consensus 59 ~---------------~~~~v~i~d~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~t~~~d---~~i~~wd~~~~ 114 (216)
+ .++.|++||+++++.+..+.. | ...|.+++|+|++++|++++.| +.|++||++++
T Consensus 189 i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 189 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred ceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 2 689999999999999999998 8 9999999999999999999999 99999999999
Q ss_pred ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------E------ee--------
Q 043942 115 ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------D------GH-------- 166 (216)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~------~~-------- 166 (216)
+.+..+........ .......|...|.+++|+|++++|++++.|+.+ . .|
T Consensus 269 ~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 269 ERIGSLSVPTHSSQ--ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp CEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred cccceeccCccccc--ccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 88777753110000 000000167889999999999999999999988 4 56
Q ss_pred -------eCCEEEEEEecCC----------CeEEEEeCCCcEEEEEccccc
Q 043942 167 -------IDAIQSLSVSAIR----------ESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 167 -------~~~i~~~~~~~~~----------~~l~s~~~d~~v~vw~~~~~~ 200 (216)
..+|.+++|+|++ ++|++++.||.|++|++.+++
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8899999999998 799999999999999998763
No 77
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=9.9e-29 Score=186.39 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=142.0
Q ss_pred ccceEEEEEccCCCEEEEEcCCC-------cEEEEECCCCce--------EE--EEeCCCCcc-----------------
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHG-------LVQNRDTSSRNL--------QC--TVEGPRGGI----------------- 59 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~-------~v~vwd~~~~~~--------~~--~~~~~~~~~----------------- 59 (216)
..||++++|+||+++|++|+.+. .|++|++..... .. .+..+...+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~ 93 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN 93 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence 46899999999999999997543 599999875431 11 122222211
Q ss_pred --------cCcEEEEEECCCccee-e---e-----eeccCCCeeEEEEcCCCcEEEE--ecCCCeEEEEeCCCCceeEEe
Q 043942 60 --------EDSTVWMWNADRGAYL-N---M-----FSGHGSGLTCGDFTTDGKTICT--GSDNATLSIWNPKGGENFHAI 120 (216)
Q Consensus 60 --------~~~~v~i~d~~~~~~~-~---~-----~~~~~~~v~~~~~~~~~~~l~t--~~~d~~i~~wd~~~~~~~~~~ 120 (216)
.++.+++|++.+.... . . ...+...+.+++|+|||+++++ ++.|++|++||+++++.+..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 5788999998754321 1 1 1234456889999999998764 457999999999999888776
Q ss_pred eccc----ccccccceEE-----------------------EeeeecCeEEEEeCCCCcEEEEecccCe----E------
Q 043942 121 RRSS----LEFSLNYWMI-----------------------CTSLYDGVTCLSWPGTSKYLVTGCVDGK----V------ 163 (216)
Q Consensus 121 ~~~~----~~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~l~~~~~~~~----i------ 163 (216)
.... +.+.+....+ ...|...+.+++|+|+++++++++.++. +
T Consensus 174 ~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~ 253 (365)
T 4h5i_A 174 ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK 253 (365)
T ss_dssp ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred CCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence 5321 1122211111 1124556888888888888888877662 1
Q ss_pred ------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec-CCcceeEE
Q 043942 164 ------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA-PSYSFKLF 213 (216)
Q Consensus 164 ------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~-~~~~~~~~ 213 (216)
.+|..+|++++|+|+|++||+|+.|++|+|||+++++.+..+ ..|...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp TTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred cceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 456788999999999999999999999999999999887764 56665554
No 78
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-29 Score=192.26 Aligned_cols=189 Identities=13% Similarity=0.239 Sum_probs=157.8
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCC----CceEEEEeCCCCcc-----------------cCcEEEEEECC
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS----RNLQCTVEGPRGGI-----------------EDSTVWMWNAD 70 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~----~~~~~~~~~~~~~~-----------------~~~~v~i~d~~ 70 (216)
.|...|.+++|+|++++|++++.|+.|++||+.+ .+....+..|...+ .|+.|++||++
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5888999999999999999999999999999988 34666666665544 78999999999
Q ss_pred Ccc------eee---eeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 71 RGA------YLN---MFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 71 ~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
+++ ... ....|...|.+++|+|+ +.++++++.|+.|++||+++++.+..+...... .++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~~~~ 215 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---------SGIKQ 215 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---------SCCCC
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---------cccCC
Confidence 876 332 24678899999999998 789999999999999999999888877651100 00278
Q ss_pred CeEEEEeCCCC-cEEEEecccC---eE---------------E-eeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccc
Q 043942 141 GVTCLSWPGTS-KYLVTGCVDG---KV---------------D-GHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 141 ~v~~~~~~~~~-~~l~~~~~~~---~i---------------~-~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
.+.+++|+|++ .++++++.++ .+ . +|...|.+++|+| ++++|++++.|+.|++||+.++
T Consensus 216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence 89999999997 6899999887 65 4 7889999999999 9999999999999999999998
Q ss_pred cceeecCCcc
Q 043942 200 RRATKAPSYS 209 (216)
Q Consensus 200 ~~~~~~~~~~ 209 (216)
+....+..+.
T Consensus 296 ~~~~~~~~~~ 305 (416)
T 2pm9_A 296 EQLSQFPARG 305 (416)
T ss_dssp CEEEEEECSS
T ss_pred ccceeecCCC
Confidence 8776665443
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.5e-28 Score=190.58 Aligned_cols=204 Identities=23% Similarity=0.372 Sum_probs=164.4
Q ss_pred eeEEeeccccce-EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEEC
Q 043942 6 WASEILGHKDSF-SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNA 69 (216)
Q Consensus 6 ~~~~~~~h~~~v-~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~ 69 (216)
....+.+|...| .++.+ ++++|++|+.||.|++||+.+++.+..+.+|...+ .|++|++||+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 456889998885 55555 56899999999999999999999999999887766 8999999999
Q ss_pred CCcceeeeeeccCCCeeEEEEc--CCCcEEEEecCCCeEEEEeCCCCceeEEeecccc--------cccccceEEEeeee
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFT--TDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL--------EFSLNYWMICTSLY 139 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 139 (216)
++++.+..+.+|...|.+++|+ ++++++++++.|+.|++||++++........... ...........+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999998 5789999999999999999998765433221100 00111123334577
Q ss_pred cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
..+.++ +++++++++++.|+.+ .+|...|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 777776 5778999999999987 468899999999999999999999999999999998888777
Q ss_pred CCcceeEE
Q 043942 206 PSYSFKLF 213 (216)
Q Consensus 206 ~~~~~~~~ 213 (216)
..+...+.
T Consensus 349 ~~h~~~v~ 356 (464)
T 3v7d_B 349 QGHTALVG 356 (464)
T ss_dssp CCCSSCEE
T ss_pred eCCCCcEE
Confidence 66655443
No 80
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=9.3e-29 Score=190.32 Aligned_cols=182 Identities=18% Similarity=0.318 Sum_probs=154.4
Q ss_pred CceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCce-------EEEEeCCCCcc----------------
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNL-------QCTVEGPRGGI---------------- 59 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~-------~~~~~~~~~~~---------------- 59 (216)
.+++..+.+|...|.+++|+|+++ +|++++.||.|++||+.++.. ...+..|...+
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 567788999999999999999988 999999999999999987321 23444444332
Q ss_pred -cCcEEEEEECCCc---ceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCC-CceeEEeecccccccccceE
Q 043942 60 -EDSTVWMWNADRG---AYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 60 -~~~~v~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~ 133 (216)
.++.|++||++++ +.+..+..|...|++++|+|+++ ++++|+.|+.|++||+++ +..+..+..
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~----------- 319 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES----------- 319 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC-----------
T ss_pred eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec-----------
Confidence 7999999999976 57777888999999999999887 688999999999999997 455677765
Q ss_pred EEeeeecCeEEEEeCCCCc-EEEEecccCeE----------------------------EeeeCCEEEEEEecCCC-eEE
Q 043942 134 ICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV----------------------------DGHIDAIQSLSVSAIRE-SLV 183 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i----------------------------~~~~~~i~~~~~~~~~~-~l~ 183 (216)
|...|.+++|+|++. ++++++.|+.+ .+|...|.+++|+|+++ +|+
T Consensus 320 ----h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 320 ----HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp ----CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred ----CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 889999999999985 68889888876 25677899999999999 899
Q ss_pred EEeCCCcEEEEEccccc
Q 043942 184 SVSVDGTARVFEIAEFR 200 (216)
Q Consensus 184 s~~~d~~v~vw~~~~~~ 200 (216)
+++.||.|++|++....
T Consensus 396 s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 396 SVSEDNIMQVWQMAENV 412 (430)
T ss_dssp EEETTSEEEEEEECHHH
T ss_pred EEECCCCEEEeEccccc
Confidence 99999999999997643
No 81
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1e-29 Score=207.75 Aligned_cols=179 Identities=22% Similarity=0.309 Sum_probs=151.7
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECC--CCceEEEEeCCCCcc------------------cCcEEEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTS--SRNLQCTVEGPRGGI------------------EDSTVWM 66 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~~------------------~~~~v~i 66 (216)
+..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++....+.+|...+ .|+.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45788999999999999999999999999999999998 446666666665544 7899999
Q ss_pred EECCCcc--eeeeeeccCCCeeEEEEcCC--CcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeec
Q 043942 67 WNADRGA--YLNMFSGHGSGLTCGDFTTD--GKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 67 ~d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
||+++++ .+..+.+|...|++++|+|+ ++.+++|+.|+.|++||++++.. ...+.. |..
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~---------------~~~ 146 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA---------------HAI 146 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC---------------CSS
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec---------------CCC
Confidence 9999886 67778889999999999999 99999999999999999997743 233333 888
Q ss_pred CeEEEEeCC-------------CCcEEEEecccCeE------------------EeeeCCEEEEEEecC---CCeEEEEe
Q 043942 141 GVTCLSWPG-------------TSKYLVTGCVDGKV------------------DGHIDAIQSLSVSAI---RESLVSVS 186 (216)
Q Consensus 141 ~v~~~~~~~-------------~~~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~---~~~l~s~~ 186 (216)
.|.+++|+| ++.++++++.||.+ .+|..+|.+++|+|+ +++|++++
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 999999999 58999999999987 457889999999999 89999999
Q ss_pred CCCcEEEEEccccc
Q 043942 187 VDGTARVFEIAEFR 200 (216)
Q Consensus 187 ~d~~v~vw~~~~~~ 200 (216)
.||.|++||+.+++
T Consensus 227 ~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 227 QDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSSCEEEEEESSSS
T ss_pred cCCEEEEecCCCCC
Confidence 99999999998864
No 82
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-28 Score=185.80 Aligned_cols=196 Identities=18% Similarity=0.255 Sum_probs=155.9
Q ss_pred ccccceEEEEEccCCC-EEEEEcCCCcEEEEEC----CCCc------eEEEEeC----------CCCcc-----------
Q 043942 12 GHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT----SSRN------LQCTVEG----------PRGGI----------- 59 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~----~~~~------~~~~~~~----------~~~~~----------- 59 (216)
.|.+.|.+++|+|+++ +|++++.|+.|++||+ .+++ ....+.. |...+
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 4568999999999999 9999999999999999 8877 4444444 23222
Q ss_pred -----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc--------
Q 043942 60 -----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE-------- 126 (216)
Q Consensus 60 -----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~-------- 126 (216)
.++.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+......
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----------
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 789999999 667888889999999999999999999999999999999999998877766542211
Q ss_pred ------------ccc---------------------cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942 127 ------------FSL---------------------NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------- 163 (216)
Q Consensus 127 ------------~~~---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------- 163 (216)
+.+ ........|...+.+++|+|+++++++++.|+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC
T ss_pred ccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 000 1112223477889999999999999999999987
Q ss_pred ----EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 164 ----DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 164 ----~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
..|...|.+++|+|++ ++++++.|+.|++||+.+++....+..+.
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 330 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG 330 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT
T ss_pred ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC
Confidence 4588899999999999 99999999999999999888776555443
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-28 Score=179.34 Aligned_cols=187 Identities=17% Similarity=0.160 Sum_probs=162.2
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMW 67 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~ 67 (216)
.++++++.+|.+.|.+++| |++++|++++.||.|++||+.+++....+..+...+ .++.+++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 4678899999999999999 999999999999999999999998888887776654 78999999
Q ss_pred ECCCc---ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 68 NADRG---AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 68 d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
++... +.+..+.+|...|.+++| +++.+++++.|+.|++|| .++....+.. |...+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~---------------~~~~v~~ 147 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA---------------HNASVWD 147 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC---------------CSSCEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc---------------CCCceeE
Confidence 98753 567778899999999999 577999999999999999 5666666665 8899999
Q ss_pred EEeCC-CCcEEEEecccCeE------------E-eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942 145 LSWPG-TSKYLVTGCVDGKV------------D-GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF 210 (216)
Q Consensus 145 ~~~~~-~~~~l~~~~~~~~i------------~-~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~ 210 (216)
+.|.| ++.++++++.|+.+ . .|...+.+++|+|++. +++++.|+.|++||+++++....+..+..
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 226 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES 226 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc
Confidence 99988 99999999999988 2 2788999999999998 89999999999999999887776655544
Q ss_pred e
Q 043942 211 K 211 (216)
Q Consensus 211 ~ 211 (216)
.
T Consensus 227 ~ 227 (313)
T 3odt_A 227 F 227 (313)
T ss_dssp C
T ss_pred e
Confidence 3
No 84
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.8e-28 Score=188.89 Aligned_cols=176 Identities=21% Similarity=0.438 Sum_probs=158.6
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMW 67 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~ 67 (216)
++++.+..+.+|.+.|.+++| ++++|++|+.||.|++||+.+++....+..|...+ .|+.|++|
T Consensus 161 ~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 161 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 238 (435)
T ss_dssp SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEE
Confidence 567888999999999999999 78899999999999999999999999998887755 89999999
Q ss_pred ECCCccee---eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE
Q 043942 68 NADRGAYL---NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC 144 (216)
Q Consensus 68 d~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (216)
|++++... ..+.+|...|.+++| +++++++|+.|+.|++||+++++.+..+.. |...+.+
T Consensus 239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------------~~~~v~~ 301 (435)
T 1p22_A 239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG---------------HKRGIAC 301 (435)
T ss_dssp ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC---------------CSSCEEE
T ss_pred eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC---------------CCCcEEE
Confidence 99987655 667889999999999 688999999999999999999999888876 8889999
Q ss_pred EEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 145 LSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 145 ~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+.+ ++.++++++.||.+ .+|...|.+++| ++++|++++.||.|++||+.+++
T Consensus 302 ~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 302 LQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 998 46899999999988 568889999998 78899999999999999998765
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=9.7e-29 Score=190.49 Aligned_cols=186 Identities=17% Similarity=0.270 Sum_probs=145.3
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-----------eEEEEeCCC------------Ccc----------
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-----------LQCTVEGPR------------GGI---------- 59 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-----------~~~~~~~~~------------~~~---------- 59 (216)
|.+.|.+++|+|+|++||+|+.||.|++||+.+++ ....+.+|. ..+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999999876 467777776 222
Q ss_pred --------cCcEEEEEECCCccee---------------------------------------ee-eeccCCCeeEEEEc
Q 043942 60 --------EDSTVWMWNADRGAYL---------------------------------------NM-FSGHGSGLTCGDFT 91 (216)
Q Consensus 60 --------~~~~v~i~d~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~ 91 (216)
.|+.|++||+.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 7899999999764432 12 35799999999999
Q ss_pred CCCcEEEEecCCCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCC-cEEEEecccCeE------
Q 043942 92 TDGKTICTGSDNATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS-KYLVTGCVDGKV------ 163 (216)
Q Consensus 92 ~~~~~l~t~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~i------ 163 (216)
|++++|++| .|+.|++||+++. +....+...... ..+|...|.+++|+|++ +++++++.||.+
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPAN--------MEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSS--------GGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccc--------ccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 999999999 7999999999943 333332111000 01278899999999998 999999999987
Q ss_pred ------------EeeeC------------CEEEEEEecCCCeEEEEeCCCcEEEEEccc-ccceeecCCc
Q 043942 164 ------------DGHID------------AIQSLSVSAIRESLVSVSVDGTARVFEIAE-FRRATKAPSY 208 (216)
Q Consensus 164 ------------~~~~~------------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~-~~~~~~~~~~ 208 (216)
..|.. .|.+++|+|++++|++++. +.|++||++. ++....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 22332 8999999999999999998 9999999987 6655544433
No 86
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=192.93 Aligned_cols=183 Identities=14% Similarity=0.242 Sum_probs=156.3
Q ss_pred ceeEEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCc------eEEEE---eCCCCcc---------------
Q 043942 5 DWASEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRN------LQCTV---EGPRGGI--------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~------~~~~~---~~~~~~~--------------- 59 (216)
+.+..+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++ ....+ ..+...+
T Consensus 104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 183 (416)
T 2pm9_A 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS 183 (416)
T ss_dssp CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE
T ss_pred cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE
Confidence 478889999999999999998 8999999999999999998876 22222 2222222
Q ss_pred --cCcEEEEEECCCcceeeeeecc------CCCeeEEEEcCCC-cEEEEecCCC---eEEEEeCCCC-ceeEEee-cccc
Q 043942 60 --EDSTVWMWNADRGAYLNMFSGH------GSGLTCGDFTTDG-KTICTGSDNA---TLSIWNPKGG-ENFHAIR-RSSL 125 (216)
Q Consensus 60 --~~~~v~i~d~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~t~~~d~---~i~~wd~~~~-~~~~~~~-~~~~ 125 (216)
.++.|++||+++++.+..+..+ ...+.+++|+|++ .++++++.|+ .|++||++++ .....+. .
T Consensus 184 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~--- 260 (416)
T 2pm9_A 184 AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG--- 260 (416)
T ss_dssp ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC---
T ss_pred EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC---
Confidence 7899999999999988888776 7889999999997 6899999998 9999999986 4455554 4
Q ss_pred cccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE--------------EeeeCCEEEEEEecCC-CeEEEEeCCC
Q 043942 126 EFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIR-ESLVSVSVDG 189 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~-~~l~s~~~d~ 189 (216)
|...|.+++|+| ++.+|++++.|+.+ ..|...|.+++|+|++ .+|++++.|+
T Consensus 261 ------------~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 261 ------------HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp ------------CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred ------------ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 889999999999 99999999999988 5678899999999999 8999999999
Q ss_pred cEEEEEcccccce
Q 043942 190 TARVFEIAEFRRA 202 (216)
Q Consensus 190 ~v~vw~~~~~~~~ 202 (216)
.|++|++.+.+..
T Consensus 329 ~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 329 KIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEEESCCCCCS
T ss_pred cEEEEEccCCCCC
Confidence 9999999886643
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.4e-28 Score=176.61 Aligned_cols=188 Identities=15% Similarity=0.254 Sum_probs=159.5
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc--------------cCcEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI--------------EDSTV 64 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~--------------~~~~v 64 (216)
++++....+..|...|.+++|+|++++|++++.|+.|++|++... +....+..|...+ .++.|
T Consensus 47 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i 126 (313)
T 3odt_A 47 DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTA 126 (313)
T ss_dssp SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCE
Confidence 456778888899999999999999999999999999999998764 5566666666554 79999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
++|| .++....+..|...+.+++|.| +++.+++++.|+.|++|| .++....+.. .+...+.
T Consensus 127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~--------------~~~~~i~ 188 (313)
T 3odt_A 127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG--------------IHNDVVR 188 (313)
T ss_dssp EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS--------------SCSSCEE
T ss_pred EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec--------------cCcccEE
Confidence 9999 6777888889999999999988 899999999999999999 3444444432 1678899
Q ss_pred EEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcc
Q 043942 144 CLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYS 209 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~ 209 (216)
+++|+|++. +++++.++.+ ..|...|.+++|+|++ .|++++.||.|++||+.+++....+..+.
T Consensus 189 ~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 266 (313)
T 3odt_A 189 HLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA 266 (313)
T ss_dssp EEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS
T ss_pred EEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC
Confidence 999999998 8899999988 5688999999999999 68899999999999999988776665544
No 88
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=2.5e-28 Score=194.93 Aligned_cols=185 Identities=20% Similarity=0.218 Sum_probs=163.1
Q ss_pred ceeEEeeccccc-eEEEEEcc--CCCEEEEEcCCCcEEEEECCCC--------ceEEEEeCCCCcc--------------
Q 043942 5 DWASEILGHKDS-FSSLAFST--DGQLLASGGFHGLVQNRDTSSR--------NLQCTVEGPRGGI-------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~-v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~-------------- 59 (216)
+.+..+.+|.+. |.+++|+| ++++|++++.||.|++||+.++ +....+..+...+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 788899999999 99999999 9999999999999999999754 6666777666554
Q ss_pred --cC----cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccce
Q 043942 60 --ED----STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYW 132 (216)
Q Consensus 60 --~~----~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 132 (216)
.+ +.|++|| +++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++....+..
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~---------- 201 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT---------- 201 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------
T ss_pred eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------
Confidence 22 6788887 5678888999999999999999998 899999999999999999998888876
Q ss_pred EEEeeeec---CeEEEEeCCC-CcEEEEecccCeE-------------E-----eeeCCEEEEEEecCCCeEEEEeCCCc
Q 043942 133 MICTSLYD---GVTCLSWPGT-SKYLVTGCVDGKV-------------D-----GHIDAIQSLSVSAIRESLVSVSVDGT 190 (216)
Q Consensus 133 ~~~~~~~~---~v~~~~~~~~-~~~l~~~~~~~~i-------------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~ 190 (216)
|.. .|.+++|+|+ ++++++++.|+.+ . .|...|.+++|+ ++++|++++.|+.
T Consensus 202 -----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 202 -----HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275 (615)
T ss_dssp -----SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred -----cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence 777 8999999999 9999999999987 2 788999999999 9999999999999
Q ss_pred EEEEEcccccceeecCC
Q 043942 191 ARVFEIAEFRRATKAPS 207 (216)
Q Consensus 191 v~vw~~~~~~~~~~~~~ 207 (216)
|++||+.+++....+..
T Consensus 276 i~~wd~~~~~~~~~~~~ 292 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTL 292 (615)
T ss_dssp EEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCcEEEEEcC
Confidence 99999998877665443
No 89
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.1e-28 Score=186.18 Aligned_cols=176 Identities=20% Similarity=0.319 Sum_probs=150.7
Q ss_pred EEeeccccceEEEEEccC-CCEEEEEcCCCcEEEEECCC----------CceEEEEeCCCCcc-----------------
Q 043942 8 SEILGHKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSS----------RNLQCTVEGPRGGI----------------- 59 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~----------~~~~~~~~~~~~~~----------------- 59 (216)
.....|.+.|++++|+|+ +++|++++.||.|++||+.+ .+....+..|...+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 68999999999999999986 56677777766544
Q ss_pred cCcEEEEEECCCcce-------eeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCC---ceeEEeeccccccc
Q 043942 60 EDSTVWMWNADRGAY-------LNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGG---ENFHAIRRSSLEFS 128 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~ 128 (216)
.++.|++||++++.. ...+.+|...|.+++|+| ++..+++++.|+.|++||++++ +....+..
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~------ 275 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA------ 275 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec------
Confidence 789999999987322 455678999999999999 6789999999999999999987 45555554
Q ss_pred ccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE---------------EeeeCCEEEEEEecCCC-eEEEEeCCCcE
Q 043942 129 LNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV---------------DGHIDAIQSLSVSAIRE-SLVSVSVDGTA 191 (216)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i---------------~~~~~~i~~~~~~~~~~-~l~s~~~d~~v 191 (216)
|...|++++|+|++. ++++++.||.+ ..|...|.+++|+|+++ +|++++.|+.|
T Consensus 276 ---------~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i 346 (430)
T 2xyi_A 276 ---------HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346 (430)
T ss_dssp ---------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred ---------CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcE
Confidence 889999999999987 68899999988 56889999999999995 68899999999
Q ss_pred EEEEccc
Q 043942 192 RVFEIAE 198 (216)
Q Consensus 192 ~vw~~~~ 198 (216)
++||+..
T Consensus 347 ~iwd~~~ 353 (430)
T 2xyi_A 347 HVWDLSK 353 (430)
T ss_dssp EEEEGGG
T ss_pred EEEeCCC
Confidence 9999987
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=5.9e-28 Score=182.93 Aligned_cols=186 Identities=13% Similarity=0.110 Sum_probs=150.5
Q ss_pred CCCceeEEee--ccccceEEEEEcc-CCCEEEEEcCCCcEEEEECCCCceEEEEeCCC---Ccc----------------
Q 043942 2 NQGDWASEIL--GHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR---GGI---------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~--~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~---------------- 59 (216)
.+++....+. +|...|.+++|+| ++++|++++.|+.|++||+.+ +....+..+. ..+
T Consensus 104 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 182 (383)
T 3ei3_B 104 DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD 182 (383)
T ss_dssp TSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred CCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence 3455555554 6999999999999 779999999999999999986 4455554433 211
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc-EEEEecCCCeEEEEeCCC----CceeEEeecccccccccceEE
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK-TICTGSDNATLSIWNPKG----GENFHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~ 134 (216)
.++.|++||+ +++++..+.+|...|.+++|+|+++ ++++++.|+.|++||+++ +..+..+.
T Consensus 183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------------- 248 (383)
T 3ei3_B 183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP------------- 248 (383)
T ss_dssp TTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-------------
T ss_pred CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-------------
Confidence 7899999999 5778888999999999999999999 999999999999999997 44444442
Q ss_pred EeeeecCeEEEEeCC-CCcEEEEecccCeE--------------Eeee-----------------CCEEEEEEecCCCeE
Q 043942 135 CTSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------DGHI-----------------DAIQSLSVSAIRESL 182 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------~~~~-----------------~~i~~~~~~~~~~~l 182 (216)
|...|.+++|+| ++.+|++++.|+.+ ..|. ..+..++|+|++++
T Consensus 249 ---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~- 324 (383)
T 3ei3_B 249 ---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL- 324 (383)
T ss_dssp ---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-
T ss_pred ---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-
Confidence 889999999999 99999999999988 2221 34455677777777
Q ss_pred EEEeCCCcEEEEEcccccceeecCC
Q 043942 183 VSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 183 ~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
+++.|+.|++||+.+++....+..
T Consensus 325 -s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 325 -LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp -CTTCCCCEEEEETTTCCEEEEECB
T ss_pred -ccCCCCeEEEEecCCCceeeeecC
Confidence 778999999999999887766543
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.3e-28 Score=183.45 Aligned_cols=176 Identities=12% Similarity=0.143 Sum_probs=151.7
Q ss_pred EeeccccceEEEEEccC----CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-----cc--------------------
Q 043942 9 EILGHKDSFSSLAFSTD----GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-----GI-------------------- 59 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~----~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~-------------------- 59 (216)
...+|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+..+.. .+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34489999999999984 45666666678999999998877665543221 11
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEe---ecccccccccceEEE
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAI---RRSSLEFSLNYWMIC 135 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~ 135 (216)
.|+.|++||+++++.+..+.+|...|.+++|+| ++++|++++.|+.|++||+++++....+ ..
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------- 159 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG------------- 159 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-------------
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-------------
Confidence 789999999999999999999999999999999 9999999999999999999999888877 33
Q ss_pred eeeecCeEEEEeCCCCcEEEEecccCeE--------------Ee----------------------------eeCCEEEE
Q 043942 136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DG----------------------------HIDAIQSL 173 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~----------------------------~~~~i~~~ 173 (216)
|...|.+++|+|+++++++++.|+.+ .. |...|.++
T Consensus 160 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 160 --HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred --ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 88999999999999999999999988 11 88999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 174 SVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 174 ~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
+|+ +++|++++.|+.|++||+.+.+.
T Consensus 238 ~~~--~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 238 RWL--GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp EEE--TTEEEEECSSSEEEEEEESSTTC
T ss_pred EEc--CCEEEEEecCCEEEEEeCCCccc
Confidence 998 77999999999999999987654
No 92
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=204.83 Aligned_cols=188 Identities=12% Similarity=0.089 Sum_probs=149.4
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcce
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAY 74 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~ 74 (216)
..+|.+.|++++|+|++++||+|+.||.|++|+....+....+. +...+ .|++|++||+++++.
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcE
Confidence 34799999999999999999999999999999998776544432 22111 799999999999998
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcE
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKY 153 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 153 (216)
+..+. |.+.|++++|+|+++++++|+.||.|++||+++++.. .+........ .....+|...|.+++|+|+ +..
T Consensus 92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~---~~~~~~h~~~V~sl~~sp~~~~~ 166 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKS---SFFPAARLSPIVSIQWNPRDIGT 166 (902)
T ss_dssp EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHH---HTCSSSCCCCCCEEEEETTEEEE
T ss_pred EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccc---ccccccCCCCeEEEEEccCCCCE
Confidence 88886 7788999999999999999999999999999987653 2211000000 0001137889999999996 578
Q ss_pred EEEecccCeE-------------Eee------------------eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 154 LVTGCVDGKV-------------DGH------------------IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 154 l~~~~~~~~i-------------~~~------------------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+++++.|+.+ ..| ...|.+++|+|+|++|++++.||.|++||+++++.+
T Consensus 167 l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 167 VLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 9999999876 112 367999999999999999999999999999887764
Q ss_pred e
Q 043942 203 T 203 (216)
Q Consensus 203 ~ 203 (216)
.
T Consensus 247 ~ 247 (902)
T 2oaj_A 247 M 247 (902)
T ss_dssp E
T ss_pred E
Confidence 3
No 93
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=190.00 Aligned_cols=193 Identities=11% Similarity=0.129 Sum_probs=146.8
Q ss_pred eeEEeeccc------------cceEEEEEccCC--CEEEEEcCCCcEEEEECCCCceE----------------------
Q 043942 6 WASEILGHK------------DSFSSLAFSTDG--QLLASGGFHGLVQNRDTSSRNLQ---------------------- 49 (216)
Q Consensus 6 ~~~~~~~h~------------~~v~~~~~s~~~--~~l~s~~~d~~v~vwd~~~~~~~---------------------- 49 (216)
+...+++|. +.|.+++|+|++ .+|++++.|+.|++||+.+++..
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 152 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTL 152 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSC
T ss_pred EecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccce
Confidence 577889998 889999999998 79999999999999998764432
Q ss_pred -----------------EEE-eCCCCcc---------------cCcEEEEEECCC-cceee-------eeeccCCCeeEE
Q 043942 50 -----------------CTV-EGPRGGI---------------EDSTVWMWNADR-GAYLN-------MFSGHGSGLTCG 88 (216)
Q Consensus 50 -----------------~~~-~~~~~~~---------------~~~~v~i~d~~~-~~~~~-------~~~~~~~~v~~~ 88 (216)
..+ ..|...+ .|+.|++||+++ ++.+. .+.+|...|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (447)
T 3dw8_B 153 RVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA 232 (447)
T ss_dssp CCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE
T ss_pred EeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEE
Confidence 111 3344333 799999999994 44443 356899999999
Q ss_pred EEcCCC-cEEEEecCCCeEEEEeCCCCce----eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 89 DFTTDG-KTICTGSDNATLSIWNPKGGEN----FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 89 ~~~~~~-~~l~t~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
+|+|++ ++|++|+.|+.|++||+++++. ...+........ ......+...|.+++|+|++++|++++. +.+
T Consensus 233 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v 308 (447)
T 3dw8_B 233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN---RSFFSEIISSISDVKFSHSGRYMMTRDY-LSV 308 (447)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC--------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEE
T ss_pred EECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccc---cccccccCceEEEEEECCCCCEEEEeeC-CeE
Confidence 999998 9999999999999999998876 566654100000 0000002238999999999999999988 877
Q ss_pred ---------------EeeeCC---------------EEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 164 ---------------DGHIDA---------------IQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 164 ---------------~~~~~~---------------i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
..|... +..++|+|++++|++++.||.|++||+.+++..
T Consensus 309 ~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 309 KVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp EEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred EEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 233211 234899999999999999999999999987654
No 94
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-28 Score=201.63 Aligned_cols=183 Identities=15% Similarity=0.210 Sum_probs=156.0
Q ss_pred CCceeEEeeccccceEEEEEccC--CCEEEEEcCCCcEEEEECCCCc--eEEEEeCCCCcc------------------c
Q 043942 3 QGDWASEILGHKDSFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRN--LQCTVEGPRGGI------------------E 60 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~------------------~ 60 (216)
+++.+.++.+|.++|.+++|+|+ +++|++|+.||.|++||+.+++ ....+..|...+ .
T Consensus 42 ~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~ 121 (753)
T 3jro_A 42 THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS 121 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC
Confidence 45677889999999999999988 9999999999999999999886 555555554433 7
Q ss_pred CcEEEEEECCCc--ceeeeeeccCCCeeEEEEcC-------------CCcEEEEecCCCeEEEEeCCCCc----eeEEee
Q 043942 61 DSTVWMWNADRG--AYLNMFSGHGSGLTCGDFTT-------------DGKTICTGSDNATLSIWNPKGGE----NFHAIR 121 (216)
Q Consensus 61 ~~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~l~t~~~d~~i~~wd~~~~~----~~~~~~ 121 (216)
|+.|++||++++ .....+.+|...|.+++|+| +++.+++|+.||.|++||++++. ....+.
T Consensus 122 dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 201 (753)
T 3jro_A 122 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201 (753)
T ss_dssp TSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec
Confidence 899999999876 34456678999999999999 58999999999999999998774 333444
Q ss_pred cccccccccceEEEeeeecCeEEEEeCCC---CcEEEEecccCeE-------------------EeeeCCEEEEEEecCC
Q 043942 122 RSSLEFSLNYWMICTSLYDGVTCLSWPGT---SKYLVTGCVDGKV-------------------DGHIDAIQSLSVSAIR 179 (216)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~i-------------------~~~~~~i~~~~~~~~~ 179 (216)
. |...|.+++|+|+ +.++++++.||.+ ..|...|++++|+|++
T Consensus 202 ~---------------h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 266 (753)
T 3jro_A 202 G---------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG 266 (753)
T ss_dssp C---------------CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT
T ss_pred C---------------CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC
Confidence 3 8899999999999 8999999999987 3377889999999999
Q ss_pred CeEEEEeCCCcEEEEEccccc
Q 043942 180 ESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 180 ~~l~s~~~d~~v~vw~~~~~~ 200 (216)
++|++++.||.|++|++....
T Consensus 267 ~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 267 NVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCEEEECSSSCEECCBCCSSS
T ss_pred CEEEEEcCCCEEEEEecCCCC
Confidence 999999999999999998543
No 95
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=3.2e-27 Score=182.38 Aligned_cols=184 Identities=19% Similarity=0.409 Sum_probs=164.4
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWM 66 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i 66 (216)
+++++.+.++.+|.+.|.+++|+ +++|++++.|+.|++||+.+++....+..|...+ .|+.|++
T Consensus 146 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~ 223 (445)
T 2ovr_B 146 AVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRV 223 (445)
T ss_dssp TTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred CCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEE
Confidence 35788899999999999999998 5799999999999999999999999998887765 7999999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
||+++++.+..+.+|...|.+++| +++.+++++.|+.|++||+++++.+..+.. |...+.++.
T Consensus 224 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------~~~~v~~~~ 286 (445)
T 2ovr_B 224 WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG---------------HTNRVYSLQ 286 (445)
T ss_dssp EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC---------------CSSCEEEEE
T ss_pred EECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC---------------CCCceEEEE
Confidence 999999999999999999999999 688999999999999999999998888876 889999999
Q ss_pred eCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 147 WPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 147 ~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
| ++.++++++.|+.+ .+|...+.++.+ ++++|++++.||.|++||+.+++....+..
T Consensus 287 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 287 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp E--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 9 78999999999988 466777877776 567999999999999999998887766543
No 96
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2.3e-27 Score=183.13 Aligned_cols=183 Identities=25% Similarity=0.417 Sum_probs=161.3
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADR 71 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~ 71 (216)
....+.+|.+.|.. ++++++++|++|+.||.|++||+.+++....+.+|...+ .|++|++||+++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCc
Confidence 46778999987533 355578999999999999999999999999998888766 899999999999
Q ss_pred cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (216)
++.+..+.+|...|.+++|+ ++.+++|+.|+.|++||+.+++.+..+.. |...+.++.| ++
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---------------~~~~v~~~~~--~~ 249 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMG---------------HVAAVRCVQY--DG 249 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEEC---------------CSSCEEEEEE--CS
T ss_pred CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcC---------------CcccEEEEEE--CC
Confidence 99999999999999999996 56899999999999999999998888876 8899999999 68
Q ss_pred cEEEEecccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcce
Q 043942 152 KYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSF 210 (216)
Q Consensus 152 ~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~ 210 (216)
.++++++.|+.+ .+|...|.+++| +++++++++.|+.|++||+++++....+..+..
T Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 320 (445)
T 2ovr_B 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320 (445)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS
T ss_pred CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc
Confidence 899999999988 467889999999 889999999999999999999887776655543
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=9.7e-28 Score=178.80 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=156.6
Q ss_pred eEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEEC-CCCceEEEEeC--CCCcc---------------cCcEEEEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT-SSRNLQCTVEG--PRGGI---------------EDSTVWMW 67 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~-~~~~~~~~~~~--~~~~~---------------~~~~v~i~ 67 (216)
...+.+|...|.+++|+|+++ +|++++.|+.|++||+ .+++. ..+.. |...+ .|+.|++|
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iw 127 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEE
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEE
Confidence 456668999999999999999 9999999999999999 76654 44444 44433 79999999
Q ss_pred ECCC---------cceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-Ccee--EEeecccccccccceEEE
Q 043942 68 NADR---------GAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENF--HAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 68 d~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~--~~~~~~~~~~~~~~~~~~ 135 (216)
|+++ ++++..+. |...+.+++|+|++ +++++.|+.|++||+++ +... .....
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------- 191 (342)
T 1yfq_A 128 DPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG------------- 191 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECS-------------
T ss_pred cccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecC-------------
Confidence 9998 77777777 88999999999887 99999999999999998 5432 22222
Q ss_pred eeeecCeEEEEeCC-CCcEEEEecccCeE--------------------EeeeC---------CEEEEEEecCCCeEEEE
Q 043942 136 TSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------------DGHID---------AIQSLSVSAIRESLVSV 185 (216)
Q Consensus 136 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------------~~~~~---------~i~~~~~~~~~~~l~s~ 185 (216)
+...+.+++|+| +++++++++.+|.+ ..|.. .|.+++|+|++++|+++
T Consensus 192 --~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 269 (342)
T 1yfq_A 192 --LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA 269 (342)
T ss_dssp --CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE
T ss_pred --CCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe
Confidence 678899999999 99999999999877 12333 89999999999999999
Q ss_pred eCCCcEEEEEcccccceeecCCc-ceeEE
Q 043942 186 SVDGTARVFEIAEFRRATKAPSY-SFKLF 213 (216)
Q Consensus 186 ~~d~~v~vw~~~~~~~~~~~~~~-~~~~~ 213 (216)
+.||.|++||+.+++....+..+ ...+.
T Consensus 270 ~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 298 (342)
T 1yfq_A 270 GSDGIISCWNLQTRKKIKNFAKFNEDSVV 298 (342)
T ss_dssp ETTSCEEEEETTTTEEEEECCCCSSSEEE
T ss_pred cCCceEEEEcCccHhHhhhhhcccCCCce
Confidence 99999999999999888888776 55443
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.2e-27 Score=184.34 Aligned_cols=180 Identities=21% Similarity=0.420 Sum_probs=153.4
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE---EEEeCCCCcc--------------cCcE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ---CTVEGPRGGI--------------EDST 63 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~---~~~~~~~~~~--------------~~~~ 63 (216)
+++++.+.++.+|...|.+++|++ +++++++.|+.|++||+.+++.. ..+..|...+ .|+.
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 277 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 277 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSE
T ss_pred CCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCe
Confidence 357888999999999999999974 59999999999999999987655 4555665544 7999
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
|++||+++++.+..+.+|...|.+++|+ ++++++|+.|+.|++||+++++.+..+.. |...|.
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~---------------h~~~v~ 340 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG---------------HEELVR 340 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC---------------CSSCEE
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeC---------------CcCcEE
Confidence 9999999999999999999999999994 67999999999999999999999888876 889999
Q ss_pred EEEeCCCCcEEEEecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 144 CLSWPGTSKYLVTGCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+++| ++.++++++.||.+ .+|...|.+++| ++++|++++.||.|++||+.+..
T Consensus 341 ~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 341 CIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred EEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 9999 78899999999987 357788999999 78899999999999999998866
Q ss_pred cee
Q 043942 201 RAT 203 (216)
Q Consensus 201 ~~~ 203 (216)
...
T Consensus 417 ~~~ 419 (435)
T 1p22_A 417 AAQ 419 (435)
T ss_dssp ---
T ss_pred Ccc
Confidence 544
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.3e-27 Score=180.38 Aligned_cols=169 Identities=15% Similarity=0.005 Sum_probs=145.2
Q ss_pred ccccceEEEEEccCCCEE-EEEcCCCcEEEEECC--CCceEEEEeC--CCCcc----------------cCcEEEEEECC
Q 043942 12 GHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTS--SRNLQCTVEG--PRGGI----------------EDSTVWMWNAD 70 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~--~~~~~~~~~~--~~~~~----------------~~~~v~i~d~~ 70 (216)
+|.+.|.+++|+|++++| ++++.|+.|++||+. +++....+.. +...+ .++.+++|++.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC
Confidence 456689999999999996 899999999999999 8887777652 22222 78999999998
Q ss_pred Ccceee----eeeccCCCeeEEEEcCC---CcEEEEecCCCeEEEEeCCCCceeEEe-ecccccccccceEEEeeeecCe
Q 043942 71 RGAYLN----MFSGHGSGLTCGDFTTD---GKTICTGSDNATLSIWNPKGGENFHAI-RRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 71 ~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~t~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v 142 (216)
++.... .+.+|...|++++|+|+ +++|++++.|+.|++||+++++.+..+ .. |...|
T Consensus 180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~---------------h~~~v 244 (450)
T 2vdu_B 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG---------------HKHFV 244 (450)
T ss_dssp SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC---------------CSSCE
T ss_pred CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC---------------CCCce
Confidence 876544 77889999999999999 999999999999999999998877764 34 88999
Q ss_pred EEEEeCCCCcEEEEecccCeE--------------E-------------------------eeeCCEEEEEEecCCCeEE
Q 043942 143 TCLSWPGTSKYLVTGCVDGKV--------------D-------------------------GHIDAIQSLSVSAIRESLV 183 (216)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~i--------------~-------------------------~~~~~i~~~~~~~~~~~l~ 183 (216)
.+++|+ ++++|++++.|+.+ . .....|.+++|+|++++|+
T Consensus 245 ~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 245 SSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp EEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEE
T ss_pred EEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEE
Confidence 999999 99999999999988 1 1234689999999999999
Q ss_pred EEe-CCCcEEEEEc
Q 043942 184 SVS-VDGTARVFEI 196 (216)
Q Consensus 184 s~~-~d~~v~vw~~ 196 (216)
+++ .|+.|++|++
T Consensus 324 ~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 324 FFVEATKCIIILEM 337 (450)
T ss_dssp EEETTCSEEEEEEE
T ss_pred EEECCCCeEEEEEe
Confidence 998 8999999999
No 100
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1e-27 Score=182.58 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=129.0
Q ss_pred EEeeccccceEEEEEcc--------CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cCc
Q 043942 8 SEILGHKDSFSSLAFST--------DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------EDS 62 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~--------~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~~ 62 (216)
..+.+|.+.|++++|+| |+++||+++.|++|++||+.++.....+..+...+ .|+
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~ 209 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG 209 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence 34678999999999998 78999999999999999998887776665555443 899
Q ss_pred EEEEEECCCcceeee-------------------------eeccCCCeeEEEEc-CCCcEEEEecCCCeEEEEeCCCCce
Q 043942 63 TVWMWNADRGAYLNM-------------------------FSGHGSGLTCGDFT-TDGKTICTGSDNATLSIWNPKGGEN 116 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~-------------------------~~~~~~~v~~~~~~-~~~~~l~t~~~d~~i~~wd~~~~~~ 116 (216)
+|++||+++++.... ..+|...+.+++|. |+++.+++++.|+.+++||+..++.
T Consensus 210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 999999987654322 23577789999986 7999999999999999999998776
Q ss_pred eEEeeccccc-----ccccceEEEeeeecCeEEEEeCC-CCcEEEEecccCeE--------------EeeeCCEEEEEEe
Q 043942 117 FHAIRRSSLE-----FSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDGKV--------------DGHIDAIQSLSVS 176 (216)
Q Consensus 117 ~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~ 176 (216)
...+...... ..+.... ...+...+..+.+.+ ++.++++++.||.+ ..|..+|.+++|+
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs 368 (393)
T 4gq1_A 290 YNEISDSTMKLGPKNLLPNVQG-ISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH 368 (393)
T ss_dssp --------------CCSCSEEE-ECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC
T ss_pred CceEeeecCccccEEEcccccc-ccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc
Confidence 5555431110 1111000 001112222233333 44567788889988 6778899999999
Q ss_pred cCCCeEEEEeCCCcEEEEEcccc
Q 043942 177 AIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 177 ~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|+|++||+++.+| +.+|.+...
T Consensus 369 pdG~~LA~as~~G-v~lvrL~gf 390 (393)
T 4gq1_A 369 QDGSHLAIATEGS-VLLTRLMGF 390 (393)
T ss_dssp TTSSEEEEEESSE-EEEEEEGGG
T ss_pred CCCCEEEEEeCCC-eEEEEEeCc
Confidence 9999999998665 667766543
No 101
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=1.8e-26 Score=184.22 Aligned_cols=209 Identities=17% Similarity=0.197 Sum_probs=158.5
Q ss_pred CCCceeEEe-e---ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------
Q 043942 2 NQGDWASEI-L---GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------ 59 (216)
Q Consensus 2 ~~g~~~~~~-~---~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------ 59 (216)
++++.+..+ . +|...|.+++|+ ++++|++++.|+.|++||+.+++....+..+....
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence 567888888 6 899999999999 99999999999999999999999988888763111
Q ss_pred -cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC---------------------------------CcEEEEecCCCe
Q 043942 60 -EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD---------------------------------GKTICTGSDNAT 105 (216)
Q Consensus 60 -~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~l~t~~~d~~ 105 (216)
.++.|++||+++++.+..+.+|...|.+++| |+ ++.+++++.|+.
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCC
Confidence 7999999999998888888777777777666 54 566667777777
Q ss_pred EEEEeCCCCc----------------------------------eeEEeecc---------------------ccc-ccc
Q 043942 106 LSIWNPKGGE----------------------------------NFHAIRRS---------------------SLE-FSL 129 (216)
Q Consensus 106 i~~wd~~~~~----------------------------------~~~~~~~~---------------------~~~-~~~ 129 (216)
+++||+.+++ .+..+... .+. .+.
T Consensus 395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence 7777665321 11111100 000 000
Q ss_pred cc--e--EEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------Ee-eeCCEEEEEEec----------CCC
Q 043942 130 NY--W--MICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DG-HIDAIQSLSVSA----------IRE 180 (216)
Q Consensus 130 ~~--~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~-~~~~i~~~~~~~----------~~~ 180 (216)
.. . .....|...|.+++|+|++++|++++.|+.+ .+ |...|++++|+| +++
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence 00 0 1123477889999999999999999999988 33 889999999999 999
Q ss_pred eEEEEeCCCcEEEEEcccc-cceeecCCcceeE
Q 043942 181 SLVSVSVDGTARVFEIAEF-RRATKAPSYSFKL 212 (216)
Q Consensus 181 ~l~s~~~d~~v~vw~~~~~-~~~~~~~~~~~~~ 212 (216)
+|++++.||.|++||+.++ +....+..|...+
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v 587 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 587 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred EEEEEcCCCcEEEEECCCCceechhhhcCccce
Confidence 9999999999999999987 5666666665443
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=4.9e-27 Score=174.97 Aligned_cols=172 Identities=12% Similarity=0.121 Sum_probs=142.6
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCCcc-----------------cCcEEEEE
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRGGI-----------------EDSTVWMW 67 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~~~-----------------~~~~v~i~ 67 (216)
....+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ....+..+...+ .++.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 3446899999999999999999999999999999998876 223333333222 68999999
Q ss_pred EC-CCcceeeeeec--cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC---------CceeEEeecccccccccceEEE
Q 043942 68 NA-DRGAYLNMFSG--HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG---------GENFHAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 68 d~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~ 135 (216)
|+ ++++. ..+.+ |...|.+++|+| ++.+++++.|+.|++||+++ ++.+..+.
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------------- 148 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-------------- 148 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--------------
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--------------
Confidence 99 77655 67788 999999999999 99999999999999999986 44333332
Q ss_pred eeeecCeEEEEeCCCCcEEEEecccCeE-----------------EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcc
Q 043942 136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------------DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------------~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~ 197 (216)
+...+.+++|+|++ +++++.++.+ ..|...+.+++|+| +++++++++.||.+++|++.
T Consensus 149 --~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 --VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp --SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred --eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 67889999999987 8888888777 23556899999999 99999999999999999998
Q ss_pred cc
Q 043942 198 EF 199 (216)
Q Consensus 198 ~~ 199 (216)
..
T Consensus 225 ~~ 226 (342)
T 1yfq_A 225 DQ 226 (342)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 103
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=8.8e-27 Score=177.70 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=152.5
Q ss_pred ceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEE--eCCCCcc----------------cCcEEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTV--EGPRGGI----------------EDSTVW 65 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~----------------~~~~v~ 65 (216)
+++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++....+ ..|...+ .|+.|+
T Consensus 122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 201 (402)
T 2aq5_A 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201 (402)
T ss_dssp SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEE
Confidence 5678899999999999999998 69999999999999999999999888 5666544 799999
Q ss_pred EEECCCcceeeee-eccCCC-eeEEEEcCCCcEEEEe---cCCCeEEEEeCCCCce-eEEeecccccccccceEEEeeee
Q 043942 66 MWNADRGAYLNMF-SGHGSG-LTCGDFTTDGKTICTG---SDNATLSIWNPKGGEN-FHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 66 i~d~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~t~---~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
+||+++++.+..+ .+|.+. +.++.|+|+++++++| +.|+.|++||+++++. ...... .+.
T Consensus 202 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~ 267 (402)
T 2aq5_A 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL--------------DTS 267 (402)
T ss_dssp EEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC--------------CCC
T ss_pred EEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec--------------cCC
Confidence 9999999998888 678775 8999999999999999 8999999999998764 332221 166
Q ss_pred cCeEEEEeCCCCcEEEE-ecccCeE---------------Ee--eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 140 DGVTCLSWPGTSKYLVT-GCVDGKV---------------DG--HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~-~~~~~~i---------------~~--~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
..+.+++|+|+++++++ ++.|+.+ .. |..+|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 78999999999999864 5578877 22 3488999999999998874 467999999987543
No 104
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=2.3e-26 Score=168.54 Aligned_cols=169 Identities=14% Similarity=0.053 Sum_probs=120.9
Q ss_pred ceEEEEEccC----CCEEEEEcC--------------------CCcEEEEEC-CCCceEEEEeCCCCcc-----------
Q 043942 16 SFSSLAFSTD----GQLLASGGF--------------------HGLVQNRDT-SSRNLQCTVEGPRGGI----------- 59 (216)
Q Consensus 16 ~v~~~~~s~~----~~~l~s~~~--------------------d~~v~vwd~-~~~~~~~~~~~~~~~~----------- 59 (216)
.|+.++++|+ ++++++++. |+.|++|++ .+++.+..+..|...+
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5667777777 777776553 889999999 4577776655554322
Q ss_pred --------cCcEEEEEECCCcceeeeeeccC---CCeeEEEEcCCCcEE------------EEecCCCeEEEEeCCCCce
Q 043942 60 --------EDSTVWMWNADRGAYLNMFSGHG---SGLTCGDFTTDGKTI------------CTGSDNATLSIWNPKGGEN 116 (216)
Q Consensus 60 --------~~~~v~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~t~~~d~~i~~wd~~~~~~ 116 (216)
.|++|++||+++++.++++.+|. ..+.+++|+|++.++ ++|+.|++|++||..+++.
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEE
Confidence 79999999999999999998654 367788999999876 5678999999999999988
Q ss_pred eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEE-EEEEecCCCe
Q 043942 117 FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQ-SLSVSAIRES 181 (216)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~-~~~~~~~~~~ 181 (216)
+..+.... ..+|...+.+..++ +.++++++.|+.| .+|...+. .++|+|||++
T Consensus 273 l~v~~~~~----------p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 273 VGVMLYCL----------PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp EEEEEECC----------CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSE
T ss_pred EEEEEeec----------cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCE
Confidence 76552100 00133334333333 7789999999988 35665554 5899999999
Q ss_pred EEEEeCCCcEEEEEc
Q 043942 182 LVSVSVDGTARVFEI 196 (216)
Q Consensus 182 l~s~~~d~~v~vw~~ 196 (216)
|++|+.|++|+|||+
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999996
No 105
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=1.6e-26 Score=173.44 Aligned_cols=191 Identities=13% Similarity=0.082 Sum_probs=138.1
Q ss_pred Ccee-EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------------------cCcEE
Q 043942 4 GDWA-SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------EDSTV 64 (216)
Q Consensus 4 g~~~-~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------~~~~v 64 (216)
++.+ ..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++...... |...+ .|+.|
T Consensus 75 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 75 GQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred CceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 3444 7888999999999999999999999999999999999987665332 33222 78999
Q ss_pred EEEECCCcceeeeeeccC-----------------------------------------CCeeEEEEcCCCcE----EEE
Q 043942 65 WMWNADRGAYLNMFSGHG-----------------------------------------SGLTCGDFTTDGKT----ICT 99 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~~~~~~~----l~t 99 (216)
++||+++++.+..+..+. ..+.++++.++... +++
T Consensus 154 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 154 KFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp EEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 999999887776665443 22334444433332 778
Q ss_pred ecCCCeEEEEeCCCC---ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------
Q 043942 100 GSDNATLSIWNPKGG---ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------------- 163 (216)
Q Consensus 100 ~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------------- 163 (216)
++.|+.|++||++.. .....+....... .......+...|.+++|+|++++|++++.||.+
T Consensus 234 ~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNG---TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp EETTSEEEEEESSCSCHHHHSEEEECSEEC-------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred ecCCCcEEEEecCCCCccccceeeeeeeccc---ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 888888888888766 3344444311000 000001133379999999999999999999988
Q ss_pred -EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 164 -DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 164 -~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
..|..+|.+++|+|++++|++++.|+..+.|++.+
T Consensus 311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred ecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 56788999999999999999999987666555443
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.3e-26 Score=173.36 Aligned_cols=170 Identities=9% Similarity=0.002 Sum_probs=137.7
Q ss_pred EEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-c------c----cCcEEEEEECC---------Ccceeeeee
Q 043942 20 LAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-G------I----EDSTVWMWNAD---------RGAYLNMFS 79 (216)
Q Consensus 20 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~------~----~~~~v~i~d~~---------~~~~~~~~~ 79 (216)
..+.+++++|++|+.||.|++||+.+++.+..+....- . + .|++|++|+.. +++.+..+.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 34556888999999999999999999988777652110 0 1 68889998665 455444444
Q ss_pred -ccCCCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 80 -GHGSGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 80 -~~~~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
+|.+.|.+++|+| +++++++++.|+.|++||+++++........ +...+.+++|+|++.++++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--------------~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK--------------SDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC--------------SSCCCCEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC--------------CCCceEEEEECCCCCEEEE
Confidence 5778899999999 9999999999999999999998886555321 4557999999999999999
Q ss_pred ecccCeE---------------Ee-eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 157 GCVDGKV---------------DG-HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 157 ~~~~~~i---------------~~-~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
|+.||.+ .. |..+|.+++|+|++.+|++++ |+.|++||+++.+....
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~ 250 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLA 250 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBS
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCccee
Confidence 9999988 33 889999999999999999999 55999999998776543
No 107
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=1.6e-25 Score=184.27 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=161.5
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCCcc-----------------cCc
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRGGI-----------------EDS 62 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~-----------------~~~ 62 (216)
+.+++.+.++.+|.+.|.+++|+|++++|++++.|+.|++||+.++ .....+..|...+ .++
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 3578889999999999999999999999999999999999999887 5666666665543 789
Q ss_pred EEEEEECCCcceeeeeeccC-CCeeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 63 TVWMWNADRGAYLNMFSGHG-SGLTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.|++||++++.....+..+. ..+.+++|+| +++++++++.|+.|++||+++++.+..+.. |.
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---------------~~ 228 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG---------------HM 228 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC---------------CS
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC---------------CC
Confidence 99999999888777776655 8899999999 999999999999999999999998888876 88
Q ss_pred cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCe-EEEEeCCCcEEEEEccccccee
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRES-LVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~-l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
..+.+++|+|+++++++++.||.+ ..|...+.+++|+|++.. +++++.|+.+.+|++.......
T Consensus 229 ~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (814)
T 3mkq_A 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTL 307 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCcee
Confidence 999999999999999999999987 445679999999999874 3555568889999987655443
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=1.2e-24 Score=165.02 Aligned_cols=190 Identities=13% Similarity=0.077 Sum_probs=156.0
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDST 63 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~ 63 (216)
+++++++..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++....+..+.... .++.
T Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 19 VTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp TTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCE
Confidence 35678888888775 58999999999876 677799999999999999888877554211 5699
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCe
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGV 142 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 142 (216)
|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.|+.|++||+.+++....+.. ...+
T Consensus 98 v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------------~~~~ 160 (391)
T 1l0q_A 98 LSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV----------------GRSP 160 (391)
T ss_dssp EEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC----------------CSSE
T ss_pred EEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec----------------CCCc
Confidence 999999999988887754 568999999999977 6888899999999999988777763 3567
Q ss_pred EEEEeCCCCcEE-EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEe---CCCcEEEEEcccccceeec
Q 043942 143 TCLSWPGTSKYL-VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVS---VDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 143 ~~~~~~~~~~~l-~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~---~d~~v~vw~~~~~~~~~~~ 205 (216)
..++|+|+++++ ++++.++.+ ..+...+.+++|+|++++|++++ .++.|++||+.+++....+
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence 899999999887 566778877 34556789999999999998887 6899999999988766555
Q ss_pred CCc
Q 043942 206 PSY 208 (216)
Q Consensus 206 ~~~ 208 (216)
+.+
T Consensus 241 ~~~ 243 (391)
T 1l0q_A 241 PVG 243 (391)
T ss_dssp ECC
T ss_pred ecC
Confidence 443
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-26 Score=178.15 Aligned_cols=176 Identities=13% Similarity=0.093 Sum_probs=147.3
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc---eEEEEeCCCC---------------------------------
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN---LQCTVEGPRG--------------------------------- 57 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---~~~~~~~~~~--------------------------------- 57 (216)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999976666 47899999999988 5555542211
Q ss_pred ---------------------cc-----------------cCcEEEEEECC--Ccceeeeee--ccCCCeeEEEEcCCCc
Q 043942 58 ---------------------GI-----------------EDSTVWMWNAD--RGAYLNMFS--GHGSGLTCGDFTTDGK 95 (216)
Q Consensus 58 ---------------------~~-----------------~~~~v~i~d~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 95 (216)
.+ .|+.|++||+. ++..+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 12 78999999999 888887776 5678899999999999
Q ss_pred EEEEecCCCeEEEEeCCCCceeE----EeecccccccccceEEEeeeecCeEEEEeCCC---CcEEEEecccCeE-----
Q 043942 96 TICTGSDNATLSIWNPKGGENFH----AIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT---SKYLVTGCVDGKV----- 163 (216)
Q Consensus 96 ~l~t~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~~~i----- 163 (216)
+|++++.|+.+++|++.+++... .+.. |...|.+++|+|+ +++|++++.|+.+
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---------------h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILG---------------HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEE---------------CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeec---------------ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 99999999999999998776543 3333 8889999999999 9999999999988
Q ss_pred ----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 164 ----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
.+|...|.+++|+ ++++|++++.|+.|++||+.+++....++
T Consensus 228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 279 (450)
T 2vdu_B 228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD 279 (450)
T ss_dssp SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence 3688999999999 99999999999999999999988665543
No 110
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=5.2e-26 Score=170.93 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=144.2
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCC-ceEEEEeCCCC-------------cccCcEEEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-NLQCTVEGPRG-------------GIEDSTVWMW 67 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~-------------~~~~~~v~i~ 67 (216)
++++++..+. |...|.+++++++. ++.+. |+.|++||+.++ +.+..+..+.. +..++.|++|
T Consensus 89 ~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iw 164 (355)
T 3vu4_A 89 VKKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHIT 164 (355)
T ss_dssp TTTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEE
T ss_pred CCCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEE
Confidence 5677888886 66799999999864 44443 789999999987 44333221000 1278999999
Q ss_pred ECCCcc---------------e-eeeeeccCCCeeEEEEcCCCcEEEEecCCCe-EEEEeCCCCceeEEeeccccccccc
Q 043942 68 NADRGA---------------Y-LNMFSGHGSGLTCGDFTTDGKTICTGSDNAT-LSIWNPKGGENFHAIRRSSLEFSLN 130 (216)
Q Consensus 68 d~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~ 130 (216)
|++++. + +..+.+|.+.|++++|+|++++|++|+.|++ |++||+++++.+..+....
T Consensus 165 d~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~------ 238 (355)
T 3vu4_A 165 KLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGL------ 238 (355)
T ss_dssp ECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTT------
T ss_pred ECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC------
Confidence 999765 2 6788999999999999999999999999998 9999999999888876210
Q ss_pred ceEEEeeeecCeEEEEeCCCCcEEEEecccCeEE------e-----e--------------------------eCCEEEE
Q 043942 131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVD------G-----H--------------------------IDAIQSL 173 (216)
Q Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~------~-----~--------------------------~~~i~~~ 173 (216)
|...|.+++|+|++++|++++.|+.+. . + ..+...+
T Consensus 239 -------h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 3vu4_A 239 -------DRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311 (355)
T ss_dssp -------CCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred -------CCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence 778999999999999999999999880 0 0 0112668
Q ss_pred EEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 174 SVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 174 ~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+|++++++|++++.||.+++|++...+
T Consensus 312 a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 312 AWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 999999999999999999999988754
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=168.07 Aligned_cols=183 Identities=9% Similarity=0.032 Sum_probs=139.6
Q ss_pred CCceeEEee-ccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc----------------cCc
Q 043942 3 QGDWASEIL-GHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI----------------EDS 62 (216)
Q Consensus 3 ~g~~~~~~~-~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~----------------~~~ 62 (216)
+++.++.+. +|.++|.+++|+| ++++|++++.|+.|++||+++++.......+.. .+ .|+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg 192 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG 192 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC
Confidence 455455554 6778999999999 999999999999999999999988766543322 12 899
Q ss_pred EEEEEECCCccee-eeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 63 TVWMWNADRGAYL-NMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 63 ~v~i~d~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
.|++||+++++.+ ..+.. |.+.|++++|+|++.+|++++. +.|++||+++++....+..... +..
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~------------~~~ 259 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTI------------PEF 259 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC---------------
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeeccccc------------ccc
Confidence 9999999999887 77887 9999999999999999999994 5999999998876544332000 112
Q ss_pred Ce--EEEEeCCCCcEEEEecc-cCeEEe----------eeCCEEEEEEec---CCCeEEEEeCCCcEEEEEccc
Q 043942 141 GV--TCLSWPGTSKYLVTGCV-DGKVDG----------HIDAIQSLSVSA---IRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 141 ~v--~~~~~~~~~~~l~~~~~-~~~i~~----------~~~~i~~~~~~~---~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.+ .+++|+|+++++++++. ++.+.- ...++..++|+| +.+.+++++.|+.++++-...
T Consensus 260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp --CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 22 57999999999999887 777711 113456788988 888999999999999886443
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=4.2e-24 Score=162.09 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=152.2
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
++++++..+..|. .+.+++|+|++++|+ +++.++.|++||+.+++....+..+.... .++.|
T Consensus 62 ~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v 140 (391)
T 1l0q_A 62 ATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140 (391)
T ss_dssp TTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEE
Confidence 5678888887665 899999999999775 55567999999999998887776543321 68999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
++||+++++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++....+. +...+.
T Consensus 141 ~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------~~~~~~ 203 (391)
T 1l0q_A 141 SVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----------------VEAAPS 203 (391)
T ss_dssp EEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----------------CSSEEE
T ss_pred EEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe----------------cCCCcc
Confidence 99999999988888765 457999999999887 677889999999999988777665 456788
Q ss_pred EEEeCCCCcEEEEec---ccCeE-------------EeeeCCEEEEEEecCCCeE-EEEeCCCcEEEEEcccccceeecC
Q 043942 144 CLSWPGTSKYLVTGC---VDGKV-------------DGHIDAIQSLSVSAIRESL-VSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~---~~~~i-------------~~~~~~i~~~~~~~~~~~l-~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
+++|+|+++++++++ .++.+ ......+.+++|+|++++| ++++.|+.|++||+.+++....++
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 999999999998887 46666 2223467899999999987 577889999999999887665544
Q ss_pred C
Q 043942 207 S 207 (216)
Q Consensus 207 ~ 207 (216)
.
T Consensus 284 ~ 284 (391)
T 1l0q_A 284 V 284 (391)
T ss_dssp C
T ss_pred C
Confidence 3
No 113
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=172.95 Aligned_cols=182 Identities=18% Similarity=0.226 Sum_probs=145.7
Q ss_pred cccceEEEE--EccCCCEEEEEcCCCcEEEEECCCCceEEEEeC--CCCcc----------------cCcEEEEEECCCc
Q 043942 13 HKDSFSSLA--FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG--PRGGI----------------EDSTVWMWNADRG 72 (216)
Q Consensus 13 h~~~v~~~~--~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~--~~~~~----------------~~~~v~i~d~~~~ 72 (216)
+...+.++. +++++++|++++.|+.|++||+.+++.+..+.. |...+ .|+.|++||++++
T Consensus 167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 246 (437)
T 3gre_A 167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN 246 (437)
T ss_dssp SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence 345566666 557899999999999999999999999999887 45444 8999999999999
Q ss_pred ceeeeee-ccCCCeeEEEEc----CCCcEEEEecCCCeEEEEeCCCCceeEEeecccc-----cccccce----EEEe--
Q 043942 73 AYLNMFS-GHGSGLTCGDFT----TDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL-----EFSLNYW----MICT-- 136 (216)
Q Consensus 73 ~~~~~~~-~~~~~v~~~~~~----~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~----~~~~-- 136 (216)
+++..+. .|...|.+++|+ |++.++++++.|+.|++||+++++.+..+..... .+.+... ....
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 326 (437)
T 3gre_A 247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI 326 (437)
T ss_dssp EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence 9988876 688899999665 4678999999999999999999998888774321 1111100 0011
Q ss_pred eeecCeEEEEeCCCCcEEEEecccCeE--------------Ee-------------------------------------
Q 043942 137 SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DG------------------------------------- 165 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~------------------------------------- 165 (216)
.|...|.+++|+ ++++|++++.|+.+ .+
T Consensus 327 ~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (437)
T 3gre_A 327 RSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLY 405 (437)
T ss_dssp CSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC------------
T ss_pred ccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccc
Confidence 267789999999 78999999999988 11
Q ss_pred eeCCEEEEEEecC--CCeEEEEeCCCcEEEEE
Q 043942 166 HIDAIQSLSVSAI--RESLVSVSVDGTARVFE 195 (216)
Q Consensus 166 ~~~~i~~~~~~~~--~~~l~s~~~d~~v~vw~ 195 (216)
|...|.+++|+++ +.+|++++.||.|++|+
T Consensus 406 h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 406 HHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 78999999999999995
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.5e-26 Score=175.97 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=134.2
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-----c----------------cCcEEEEEECC
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-----I----------------EDSTVWMWNAD 70 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-----~----------------~~~~v~i~d~~ 70 (216)
.|...|.+++|||+|++||+++.||.|++||... .+..+. +... + .||+|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688999999999999999999999999999543 444444 3321 1 89999999999
Q ss_pred Ccc-------eeeee----eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee---EEee-cccccccccceEEE
Q 043942 71 RGA-------YLNMF----SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF---HAIR-RSSLEFSLNYWMIC 135 (216)
Q Consensus 71 ~~~-------~~~~~----~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~---~~~~-~~~~~~~~~~~~~~ 135 (216)
++. .+.++ .+|...|.+++|+|+| +++++.|+.+++||+.++... ..+. .
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~------------- 224 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA------------- 224 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC-------------
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc-------------
Confidence 875 25665 5677899999999999 888889999999999877732 3442 3
Q ss_pred eeeecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEE--ecCCCeEEEEeCCCcEEEEEcc
Q 043942 136 TSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSV--SAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~--~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
|...|.+++|+ ++.+++++ ++.+ .+|...|..++| +|++..|+++++||+ ++|...
T Consensus 225 --h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 225 --SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp --CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred --ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 77899999999 68888887 5777 378899999999 999999999999999 999975
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=3.1e-24 Score=164.85 Aligned_cols=188 Identities=12% Similarity=0.019 Sum_probs=155.3
Q ss_pred CCCceeE-----EeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------
Q 043942 2 NQGDWAS-----EILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------- 59 (216)
Q Consensus 2 ~~g~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------- 59 (216)
++++.+. .+.+|...|.+++|+|+++++++++.|+.|++||+.+++....+..+...+
T Consensus 152 ~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (433)
T 3bws_A 152 NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW 231 (433)
T ss_dssp TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET
T ss_pred CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec
Confidence 3556665 445788899999999999999999999999999999998888887655433
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec--------CCCeEEEEeCCCCceeEEeecccccccccc
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS--------DNATLSIWNPKGGENFHAIRRSSLEFSLNY 131 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~--------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 131 (216)
.++.|++||+++++.+..+..+ ..+.+++|+|+++.+++++ .|+.|++||+++++....+.
T Consensus 232 ~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---------- 300 (433)
T 3bws_A 232 ISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---------- 300 (433)
T ss_dssp TTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----------
T ss_pred CCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----------
Confidence 5899999999999888877754 5599999999999999887 58899999999888776654
Q ss_pred eEEEeeeecCeEEEEeCCCCcEE-EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeC----------
Q 043942 132 WMICTSLYDGVTCLSWPGTSKYL-VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSV---------- 187 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~---------- 187 (216)
+...+.+++|+|+++.+ ++++.++.+ ..+...+.+++|+|+++++++++.
T Consensus 301 ------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 301 ------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp ------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTT
T ss_pred ------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccc
Confidence 56688999999999755 566788877 345678999999999998888776
Q ss_pred -----CCcEEEEEcccccceeecC
Q 043942 188 -----DGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 188 -----d~~v~vw~~~~~~~~~~~~ 206 (216)
||.|++||+.+++....++
T Consensus 375 ~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp SCCSSCCEEEEEETTTTEEEEEEE
T ss_pred cccccceEEEEEECCCCcEEEEec
Confidence 5799999998877665543
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-26 Score=180.44 Aligned_cols=170 Identities=11% Similarity=0.074 Sum_probs=131.4
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcEEEEEECCCcceeeeee-ccCCC
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDSTVWMWNADRGAYLNMFS-GHGSG 84 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~v~i~d~~~~~~~~~~~-~~~~~ 84 (216)
.-...|.+++|+|||+++||++.|++|+ |...++.+ .+|...+ .+|.+..|++.+++....+. .|...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCY 87 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCc
Confidence 4557899999999999999999999999 75555433 5555554 56677777777655433333 46788
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV- 163 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i- 163 (216)
|.+++|+|+|..||+++.||.|++||... .+..+.. .... ....+.+++|+|+|++|++|+.||.+
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~-~~~~----------~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDS-KGNL----------SSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCC-SSCS----------TTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccC-CCcc----------ccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 99999999999999999999999999543 3333321 0000 12359999999999999999999988
Q ss_pred ------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 164 ------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 164 ------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
.+|..+|.+++|+|+| +++++.|++|++|++...+.
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence 1123589999999999 88888999999999988763
No 117
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.4e-26 Score=190.83 Aligned_cols=182 Identities=8% Similarity=0.064 Sum_probs=131.9
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC 87 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~ 87 (216)
..+.+|...+.+++|+|++++|++|+.|++|++||+.++.... ...+. .++. +. .-.+|...|.+
T Consensus 429 ~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~----------~~~~~-~~l~--~~--~~~~h~~~V~s 493 (902)
T 2oaj_A 429 YLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD----------NASFE-VNLS--RT--LNKAKELAVDK 493 (902)
T ss_dssp CSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT----------TBCEE-EEHH--HH--TTCSSSCCEEE
T ss_pred CcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC----------CceEE-eech--hh--cCCCCCCceeE
Confidence 3577888888899999999999999999999999987663200 00000 0000 00 01278899999
Q ss_pred EEEcCCCcEEEEecCCCeEEEEeCCCCceeEE----------eeccc--c------------------cccccceEEEee
Q 043942 88 GDFTTDGKTICTGSDNATLSIWNPKGGENFHA----------IRRSS--L------------------EFSLNYWMICTS 137 (216)
Q Consensus 88 ~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~----------~~~~~--~------------------~~~~~~~~~~~~ 137 (216)
++|+|++++||+|+.|++|++||+.+++.... +.... . ...........+
T Consensus 494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 573 (902)
T 2oaj_A 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA 573 (902)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence 99999999999999999999999987642110 00000 0 000011233445
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE-------------------E-eeeCCEEEEEEe-----cCC---CeEEEEeCCC
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV-------------------D-GHIDAIQSLSVS-----AIR---ESLVSVSVDG 189 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i-------------------~-~~~~~i~~~~~~-----~~~---~~l~s~~~d~ 189 (216)
|...|++++|+|+| +|++|+.|+.+ . +|...|++++|+ ||| ++|++++.|+
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 89999999999999 99999999987 1 577789999999 885 8999999999
Q ss_pred cEEEEEc---ccccceeec
Q 043942 190 TARVFEI---AEFRRATKA 205 (216)
Q Consensus 190 ~v~vw~~---~~~~~~~~~ 205 (216)
+|++||+ .+++....+
T Consensus 653 tv~~wd~~p~~~g~~~~~~ 671 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQL 671 (902)
T ss_dssp EEEEEEEEECGGGCEEEEE
T ss_pred cEEEEEEecCCCCcEEEEe
Confidence 9999999 666654443
No 118
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.93 E-value=2.8e-24 Score=162.84 Aligned_cols=151 Identities=21% Similarity=0.345 Sum_probs=127.7
Q ss_pred CCCceeEEe-----eccccceEEEEEcc-CCCEEEEEcCCCcEEEEECC-CCceEEEEeCCCCcc---------------
Q 043942 2 NQGDWASEI-----LGHKDSFSSLAFST-DGQLLASGGFHGLVQNRDTS-SRNLQCTVEGPRGGI--------------- 59 (216)
Q Consensus 2 ~~g~~~~~~-----~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~--------------- 59 (216)
++++.+..+ .+|...|.+++|++ ++++|++|+.|+.|++||++ ..+.+..+.+|...+
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence 456666666 67999999999987 88999999999999999998 457777887777655
Q ss_pred -cCcEEEEEECCCcceeeeeeccC-------CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccc
Q 043942 60 -EDSTVWMWNADRGAYLNMFSGHG-------SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNY 131 (216)
Q Consensus 60 -~~~~v~i~d~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 131 (216)
.|++|++||++++..+..+..+. ..|++++|+|+++++++|+.|+.|++||+.+++....+....
T Consensus 268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------- 340 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ------- 340 (380)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC-------
T ss_pred cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc-------
Confidence 89999999999998887776543 248999999999999999999999999999888777663210
Q ss_pred eEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.+|...|.+++|+|++++|++|+.|+.+
T Consensus 341 ----~~h~~~v~~l~~s~dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 341 ----NSHEGRISCLGLSSDGSALCTGSWDKNL 368 (380)
T ss_dssp ----SSCCCCCCEEEECSSSSEEEEECTTSCE
T ss_pred ----CCCCCceEEEEECCCCCEEEEeeCCCCE
Confidence 1288999999999999999999999987
No 119
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=8.4e-23 Score=150.53 Aligned_cols=193 Identities=12% Similarity=0.166 Sum_probs=134.4
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc----------------cCcEEEEEECCCcceeeee
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI----------------EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~----------------~~~~v~i~d~~~~~~~~~~ 78 (216)
.++|+||+++ +||+|. |++|++||+.+++.+..+..+ ...+ .|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999875 777665 999999999999988887643 3323 8999999999999999999
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccc-----cccc-----------------------
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSL-----EFSL----------------------- 129 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~-----~~~~----------------------- 129 (216)
.+|...+.++.+ ++..+++++.++.+++|+...... +..+..... ....
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 999988877665 467999999999999999887643 333333000 0000
Q ss_pred ---cceEEEeeeecCeEEEEeCCCCcEE---EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEe--CC
Q 043942 130 ---NYWMICTSLYDGVTCLSWPGTSKYL---VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVS--VD 188 (216)
Q Consensus 130 ---~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~--~d 188 (216)
........+...|..+.++|++..+ ++++.++.+ ..+...+..+.|+|++..+++++ .|
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCC
Confidence 0001111133345555555543321 233344443 45566788999999998887654 78
Q ss_pred CcEEEEEcccccceeecCCcceeEE
Q 043942 189 GTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 189 ~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
+.|++||+.+++++..+..|...+.
T Consensus 264 ~~i~iwd~~~~~~~~~l~gH~~~V~ 288 (318)
T 4ggc_A 264 NQLVIWKYPTMAKVAELKGHTSRVL 288 (318)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEE
Confidence 9999999999998888887765554
No 120
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=4.6e-25 Score=167.89 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=115.4
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC------
Q 043942 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT------ 92 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~------ 92 (216)
...+++++.+|++++.|++|++||..+++.... ..+..+.+|.+.|++++|+|
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~---------------------~~~~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQ---------------------HVLGGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEE---------------------EEECTTTSCSSCEEEEEEEEEECTTC
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCcccee---------------------eeecccCCCCCceEEEEEcccccccc
Confidence 334445666899999888888888766543221 22345778999999999998
Q ss_pred --CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc-EEEEecccCeE------
Q 043942 93 --DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK-YLVTGCVDGKV------ 163 (216)
Q Consensus 93 --~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~~~i------ 163 (216)
++++|++|+.|++|++||++++.....+.. |...+.+++|+|++. +|++++.|+.+
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---------------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---------------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---------------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceeeeecC---------------CCCCcEEEEECCCCCceEEecCCCCEEEEEECC
Confidence 789999999999999999998877766655 889999999999875 79999999988
Q ss_pred ---------------------------------EeeeCCEEEEEEe-cCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 164 ---------------------------------DGHIDAIQSLSVS-AIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 164 ---------------------------------~~~~~~i~~~~~~-~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
.+|...+.++.|+ |+++.|++++.|+.+++||+..++....+.
T Consensus 218 t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~ 294 (393)
T 4gq1_A 218 LNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS 294 (393)
T ss_dssp CCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------
T ss_pred CCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe
Confidence 3466778889987 799999999999999999998766554443
No 121
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=7.2e-23 Score=157.23 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=146.0
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCCCcc---------------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------------- 59 (216)
++++.+.++..|...+.+++|+|++++++ +++.|+.|++||+.+++....+..+....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 199 KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 56778888889999999999999998875 55589999999999988776655432211
Q ss_pred --cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
.++.|++||+++++.+..+. |...+.+++|+|+++.+ ++++.|+.|++||+.+++....+.
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--------------- 342 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--------------- 342 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------
T ss_pred ccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---------------
Confidence 16799999999988776653 66688999999999754 667899999999999888777665
Q ss_pred eeecCeEEEEeCCCCcEEEEecc---------------cCeE-------------EeeeCCEEEEEEecCCCeEEEEeC-
Q 043942 137 SLYDGVTCLSWPGTSKYLVTGCV---------------DGKV-------------DGHIDAIQSLSVSAIRESLVSVSV- 187 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~~~---------------~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~- 187 (216)
+...+.+++|+|+++++++++. ||.+ ..+...+.+++|+|+|++|++++.
T Consensus 343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 421 (433)
T 3bws_A 343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL 421 (433)
T ss_dssp -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT
T ss_pred -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC
Confidence 5677899999999998888776 3566 233567899999999999988775
Q ss_pred CCcEEEEEccc
Q 043942 188 DGTARVFEIAE 198 (216)
Q Consensus 188 d~~v~vw~~~~ 198 (216)
|+.|++|++..
T Consensus 422 d~~i~v~~~~~ 432 (433)
T 3bws_A 422 DHQIRVYRRDG 432 (433)
T ss_dssp TTEEEEEEETT
T ss_pred CCeEEEEEecC
Confidence 99999999864
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=9.2e-24 Score=154.87 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=117.9
Q ss_pred CCCceeEEeeccccceEEEEEcc---CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---------------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFST---DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG--------------------- 57 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--------------------- 57 (216)
++|+.+..+.+|...+..++|+| ++++|++++.|++|++||+.+++.++++..+..
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence 35777777888888888888888 668999999999999999999999999875432
Q ss_pred ----------cccCcEEEEEECCCcceeeee-----eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 58 ----------GIEDSTVWMWNADRGAYLNMF-----SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 58 ----------~~~~~~v~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+..|+++++||..+++.+..+ .+|...+.+.+++ +.++++++.|++|++||+.+++.+.++..
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp ------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred cCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 116789999999999887655 3666555444444 78999999999999999999999999876
Q ss_pred ccccccccceEEEeeeecCeE-EEEeCCCCcEEEEecccCeE
Q 043942 123 SSLEFSLNYWMICTSLYDGVT-CLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~i 163 (216)
|...+. .++|+|+|++|++|+.|+.|
T Consensus 324 ---------------H~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 324 ---------------VSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp ---------------C--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred ---------------CCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 666554 68999999999999999987
No 123
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.92 E-value=1.1e-22 Score=156.01 Aligned_cols=194 Identities=13% Similarity=0.178 Sum_probs=140.5
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc----------------cCcEEEEEECCCcceeee
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI----------------EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~----------------~~~~v~i~d~~~~~~~~~ 77 (216)
.++.|+||++ ++||+|. |++|++||..+++....+..+ ...+ .|++|++||+++++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999975 5777765 999999999999988877643 3333 899999999999999999
Q ss_pred eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccc-----ccc-----------------------
Q 043942 78 FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSL-----EFS----------------------- 128 (216)
Q Consensus 78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~-----~~~----------------------- 128 (216)
+.+|...+.+++++ +..+++|+.|+.+++||...... +..+..... ...
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 99999999998875 67999999999999999886543 333332000 000
Q ss_pred ---ccceEEEeeeecCeEEEEeCCCCc-EEEE--ecccCeE-------------EeeeCCEEEEEEecCCCeEEEEe--C
Q 043942 129 ---LNYWMICTSLYDGVTCLSWPGTSK-YLVT--GCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVS--V 187 (216)
Q Consensus 129 ---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~--~ 187 (216)
.........+...|.+++|+|.+. .+++ |+.|+.| ..+...+.++.|+|+++.+++++ .
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~ 342 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 342 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTT
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecC
Confidence 001112233666788888888554 4443 3467766 34456788888888888877654 6
Q ss_pred CCcEEEEEcccccceeecCCcceeEE
Q 043942 188 DGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 188 d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
|+.|+|||+.+++++..+..|...+.
T Consensus 343 d~~I~iwd~~~~~~v~~l~gH~~~V~ 368 (420)
T 4gga_A 343 QNQLVIWKYPTMAKVAELKGHTSRVL 368 (420)
T ss_dssp TCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 88899999888888887777765554
No 124
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=3.3e-22 Score=153.21 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=142.4
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCC---cEEEEECCCCceEEEEeCCCCcc-------------------cC
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHG---LVQNRDTSSRNLQCTVEGPRGGI-------------------ED 61 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~~-------------------~~ 61 (216)
+...+.+.+|...|.+++|+|+|++|++++.++ .|++||+.+++... +..+...+ .+
T Consensus 168 g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 168 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 445677888999999999999999999999875 99999999887653 33333221 24
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CC--eEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
..|++||+++++. ..+..|...+.+++|+|+|+.|++++. ++ .|++||+.+++.. .+.. +
T Consensus 247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~---------------~ 309 (415)
T 2hqs_A 247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW---------------E 309 (415)
T ss_dssp CEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC---------------S
T ss_pred ceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec---------------C
Confidence 5699999998776 566778889999999999999988775 44 6888899877643 3332 5
Q ss_pred ecCeEEEEeCCCCcEEEEeccc---CeE-------------EeeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcccc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVD---GKV-------------DGHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIAEF 199 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~---~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~~~ 199 (216)
...+..++|+|+|++|++++.+ ..+ ..+ ..+.+++|+|+|++|++++.++ .|++||+. +
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g 387 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-G 387 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-S
T ss_pred CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-C
Confidence 5678899999999999887764 234 222 3789999999999999888776 79999986 4
Q ss_pred cceeecCCcc
Q 043942 200 RRATKAPSYS 209 (216)
Q Consensus 200 ~~~~~~~~~~ 209 (216)
+....++.+.
T Consensus 388 ~~~~~l~~~~ 397 (415)
T 2hqs_A 388 RFKARLPATD 397 (415)
T ss_dssp CCEEECCCSS
T ss_pred CcEEEeeCCC
Confidence 4445555544
No 125
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=5.7e-23 Score=152.68 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=119.2
Q ss_pred ceeEEeeccccceEEEEEcc--CCCEEEEEcCCCcEEEEECCCC---------ceEEEEeCCCCcc--------------
Q 043942 5 DWASEILGHKDSFSSLAFST--DGQLLASGGFHGLVQNRDTSSR---------NLQCTVEGPRGGI-------------- 59 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~~~~~-------------- 59 (216)
++...+.+|...|.+++|+| ++++|++++.|+.|++||+.++ +....+..+...+
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 46677889999999999999 6999999999999999999886 4455665554433
Q ss_pred ----cCcEEEEEECCCcce------------------------------------------------------------e
Q 043942 60 ----EDSTVWMWNADRGAY------------------------------------------------------------L 75 (216)
Q Consensus 60 ----~~~~v~i~d~~~~~~------------------------------------------------------------~ 75 (216)
.|+.|++||+++++. +
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 789999999875431 3
Q ss_pred eeeeccCCCeeEEEEcCCC----cEEEEecCCCeEEEEeCCCCceeEEeecccc--------------------------
Q 043942 76 NMFSGHGSGLTCGDFTTDG----KTICTGSDNATLSIWNPKGGENFHAIRRSSL-------------------------- 125 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~----~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~-------------------------- 125 (216)
..+.+|...|++++|+|++ ++|++++.|+.|++||++++...........
T Consensus 208 ~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (351)
T 3f3f_A 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEK 287 (351)
T ss_dssp EECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------
T ss_pred eecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccccee
Confidence 4456788999999999998 8999999999999999987532211110000
Q ss_pred -----cccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 126 -----EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 126 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
...........+|...|++++|+|++++|++++.||.+
T Consensus 288 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v 330 (351)
T 3f3f_A 288 AELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKV 330 (351)
T ss_dssp ---CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCE
T ss_pred eeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcE
Confidence 00001122233478899999999999999999999987
No 126
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.91 E-value=3.1e-22 Score=148.83 Aligned_cols=148 Identities=23% Similarity=0.314 Sum_probs=115.0
Q ss_pred cCcEEEEEECCCc-----ceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc-----ccc
Q 043942 60 EDSTVWMWNADRG-----AYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE-----FSL 129 (216)
Q Consensus 60 ~~~~v~i~d~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~~~ 129 (216)
.|++|++||+.+. .+...+.+|...|.+++|+|++++|++++.|+.|++|+................ ...
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS 138 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEee
Confidence 7999999998754 356678899999999999999999999999999999999987665544431100 000
Q ss_pred --c---------------------ceEEEeeeecCeEEEEeCCCC--cEEEEecccCeE--------------EeeeCCE
Q 043942 130 --N---------------------YWMICTSLYDGVTCLSWPGTS--KYLVTGCVDGKV--------------DGHIDAI 170 (216)
Q Consensus 130 --~---------------------~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~~i--------------~~~~~~i 170 (216)
. ......+|...+..++|++++ .++++++.|+.+ .+|..+|
T Consensus 139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v 218 (340)
T 4aow_A 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 218 (340)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcE
Confidence 0 001112366778899998764 567888888877 5688899
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 171 QSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
.+++|+|++++|++++.|+.|++||+.+.+....+..
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~ 255 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence 9999999999999999999999999998877655443
No 127
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=8e-22 Score=149.84 Aligned_cols=197 Identities=21% Similarity=0.274 Sum_probs=125.1
Q ss_pred CCCceeEEeeccccceEEEEEccC---CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------cC
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTD---GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------ED 61 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~---~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------~~ 61 (216)
.+++.+..+. +...+.++.++|. +.++++++.|+.|++||+.+++....+..|...+ .+
T Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~d 208 (408)
T 4a11_B 130 NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASAD 208 (408)
T ss_dssp TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETT
T ss_pred CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCC
Confidence 4566666665 7788999999984 4599999999999999999998888887766544 78
Q ss_pred cEEEEEECCCcc-eeeee---------------eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc
Q 043942 62 STVWMWNADRGA-YLNMF---------------SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL 125 (216)
Q Consensus 62 ~~v~i~d~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~ 125 (216)
+.|++||++++. .+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++..........
T Consensus 209 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 288 (408)
T 4a11_B 209 SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC 288 (408)
T ss_dssp SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC
T ss_pred CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc
Confidence 999999998764 33333 56888999999999999999999999999999998765432221000
Q ss_pred c--------------------------------ccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------
Q 043942 126 E--------------------------------FSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------- 163 (216)
Q Consensus 126 ~--------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------- 163 (216)
. ..........+|...|.+++|+|++++|++++.||.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 0 0111223334588899999999999999999999998
Q ss_pred -EeeeCCEEEEEEec-CCCeEEEEeCCCcEEEEEcccc
Q 043942 164 -DGHIDAIQSLSVSA-IRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 164 -~~~~~~i~~~~~~~-~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
......-....+.+ ....+.+++.|+.+++|+....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 406 (408)
T 4a11_B 369 VPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAWSHPQF 406 (408)
T ss_dssp --------------------------------------
T ss_pred cCCCCceEeccccccccceeecccCccCceeecCCccc
Confidence 11111112223333 2334556778999999987644
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=5.4e-22 Score=152.73 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=118.5
Q ss_pred cccceEEEEEccCCCEEE----EEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEE
Q 043942 13 HKDSFSSLAFSTDGQLLA----SGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCG 88 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~----s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~ 88 (216)
|...|.+++|+|+|++|+ +++.|+.|++||+.++... . . .. .+.-..+..+.+|...|.++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~-----~----~-~~-----~~~~~~~~~~~~h~~~V~~v 155 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNE-----A----K-QQ-----KRPFAYHKLLKDAGGMVIDM 155 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCT-----T----C-SS-----CCCSEEEECCCSGGGSEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccC-----C----c-CC-----cceeeeeeccCCCCCceEEE
Confidence 566799999999999999 7888888888886543100 0 0 00 00001234566799999999
Q ss_pred EEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942 89 DFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---- 163 (216)
Q Consensus 89 ~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---- 163 (216)
+|+|+ +.+|++++.|++|++||++++........ |...+.+++|+|+|++|++++.||.+
T Consensus 156 ~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~---------------~~~~v~~v~wspdg~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 156 KWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP---------------STVAVTSVCWSPKGKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp EECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC---------------GGGCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC---------------CCCceeEEEEcCCCCEEEEEcCCCcEEEEc
Confidence 99997 78999999999999999998865544443 77899999999999999999999988
Q ss_pred ---------Ee-------eeCCEEEEEEecCCCeEEEEe-CCC------cEEEEEcccc
Q 043942 164 ---------DG-------HIDAIQSLSVSAIRESLVSVS-VDG------TARVFEIAEF 199 (216)
Q Consensus 164 ---------~~-------~~~~i~~~~~~~~~~~l~s~~-~d~------~v~vw~~~~~ 199 (216)
.. |...|.+++|++++.++++.+ .|| .+++|++...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 221 PTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 01 123799999999998886533 343 3899999864
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.86 E-value=2.5e-20 Score=142.76 Aligned_cols=182 Identities=16% Similarity=0.064 Sum_probs=135.9
Q ss_pred CCCcee--EEeeccccceEEEEEcc--------------CCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc
Q 043942 2 NQGDWA--SEILGHKDSFSSLAFST--------------DGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI 59 (216)
Q Consensus 2 ~~g~~~--~~~~~h~~~v~~~~~s~--------------~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~ 59 (216)
.+|+.+ .++.+|...+..+++++ .+..++.++.+ +.|++||+...+ ...+..+...+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v 181 (415)
T 2hqs_A 103 APGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPL 181 (415)
T ss_dssp STTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCE
T ss_pred CCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcc
Confidence 456666 55888888888888775 15667766654 799999997543 44444433322
Q ss_pred ----------------cC---cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEE-EecCCCe--EEEEeCCCCcee
Q 043942 60 ----------------ED---STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTIC-TGSDNAT--LSIWNPKGGENF 117 (216)
Q Consensus 60 ----------------~~---~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d~~--i~~wd~~~~~~~ 117 (216)
.+ ..|++||+++++.. .+..|...+.+++|+|||+.|+ +++.++. |++||+.+++.
T Consensus 182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~- 259 (415)
T 2hqs_A 182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI- 259 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-
Confidence 33 49999999988775 4666888999999999999887 6666554 99999998765
Q ss_pred EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cC--eE-------------EeeeCCEEEEEEecCCCe
Q 043942 118 HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DG--KV-------------DGHIDAIQSLSVSAIRES 181 (216)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~--~i-------------~~~~~~i~~~~~~~~~~~ 181 (216)
..+.. +...+.+++|+|+|++|++++. ++ .+ ..+...+..++|+|+|++
T Consensus 260 ~~l~~---------------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 260 RQVTD---------------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKF 324 (415)
T ss_dssp EECCC---------------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSE
T ss_pred EeCcC---------------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCE
Confidence 34443 6678999999999998887775 44 33 234567889999999999
Q ss_pred EEEEeCC---CcEEEEEcccccc
Q 043942 182 LVSVSVD---GTARVFEIAEFRR 201 (216)
Q Consensus 182 l~s~~~d---~~v~vw~~~~~~~ 201 (216)
|++++.+ ..|++||+.+++.
T Consensus 325 l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 325 MVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEEEEECSSCEEEEEEETTTCCE
T ss_pred EEEEECcCCceEEEEEECCCCCE
Confidence 9988764 5899999987665
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=9e-20 Score=132.60 Aligned_cols=181 Identities=12% Similarity=0.121 Sum_probs=130.4
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC-CceEEEEeCCC-Ccc------------------c-
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS-RNLQCTVEGPR-GGI------------------E- 60 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-~~~~~~~~~~~-~~~------------------~- 60 (216)
++++.. .+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+. ..+ .
T Consensus 30 ~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 107 (297)
T 2ojh_A 30 RTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF 107 (297)
T ss_dssp TTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT
T ss_pred CCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC
Confidence 344443 5667889999999999999999987 88999999999 77665554442 111 1
Q ss_pred -CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEE-EecCCCeEEEEeCCC-CceeEEeecccccccccceEEEee
Q 043942 61 -DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTIC-TGSDNATLSIWNPKG-GENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 61 -~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
...|..++..++. ...+..+ ..+..++|+|+++.++ +++.++.+++|+++. +.....+..
T Consensus 108 ~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------- 170 (297)
T 2ojh_A 108 GKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH--------------- 170 (297)
T ss_dssp SSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC---------------
T ss_pred CcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc---------------
Confidence 3455555555554 3344433 3488999999999887 777899999998642 223333433
Q ss_pred eecCeEEEEeCCCCcEEEEec-ccCeE---------------EeeeCCEEEEEEecCCCeEEEEeCC-----------Cc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGC-VDGKV---------------DGHIDAIQSLSVSAIRESLVSVSVD-----------GT 190 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~-~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~~d-----------~~ 190 (216)
+...+.+++|+|++++++.++ .++.+ ..+...+..++|+|++++|++++.+ +.
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 667889999999999887665 35543 3445678899999999999888765 56
Q ss_pred EEEEEcccccc
Q 043942 191 ARVFEIAEFRR 201 (216)
Q Consensus 191 v~vw~~~~~~~ 201 (216)
|++||+.+++.
T Consensus 251 l~~~d~~~~~~ 261 (297)
T 2ojh_A 251 VQLMDMDGGNV 261 (297)
T ss_dssp EEEEETTSCSC
T ss_pred EEEEecCCCCc
Confidence 99999987654
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=2.2e-18 Score=128.65 Aligned_cols=194 Identities=9% Similarity=0.052 Sum_probs=145.6
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCCc------------c---------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRGG------------I--------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~------------~--------- 59 (216)
++++.+..+... ..+..++|+|+|+++ ++...++.|.+||..+++....+..+... +
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 155 (353)
T 3vgz_A 77 VTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV 155 (353)
T ss_dssp TTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred CCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEE
Confidence 456667776643 457789999999855 45566899999999999988877664311 1
Q ss_pred ------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceE
Q 043942 60 ------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWM 133 (216)
Q Consensus 60 ------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 133 (216)
.++.|.+||+++++.+..+..+...+.+++|+|+++.+++++.++.+.+||+.+++....+.....
T Consensus 156 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~-------- 227 (353)
T 3vgz_A 156 YISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDD-------- 227 (353)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS--------
T ss_pred EEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC--------
Confidence 378899999999998888875666689999999999999999999999999999988776653110
Q ss_pred EEeeeecCeEEEEeCCCCcEEEEeccc-CeE------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccc
Q 043942 134 ICTSLYDGVTCLSWPGTSKYLVTGCVD-GKV------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEF 199 (216)
Q Consensus 134 ~~~~~~~~v~~~~~~~~~~~l~~~~~~-~~i------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~ 199 (216)
++...+..++|+|+++++++++.+ +.+ .........++|+|++++++.++ .++.|.+||+.++
T Consensus 228 ---~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 228 ---GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ---SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ---CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 034467889999999977766554 655 11112235789999999665554 6899999999988
Q ss_pred cceeecCC
Q 043942 200 RRATKAPS 207 (216)
Q Consensus 200 ~~~~~~~~ 207 (216)
+....++.
T Consensus 305 ~~~~~~~~ 312 (353)
T 3vgz_A 305 KVVKTFDT 312 (353)
T ss_dssp EEEEEEEC
T ss_pred eEEEEEec
Confidence 76655443
No 132
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=5.5e-21 Score=147.12 Aligned_cols=160 Identities=17% Similarity=0.139 Sum_probs=116.1
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
...++.+++++++.++++++.++ +++|+....... ..... .... +.... ....+ .+...|.+++|+|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~---~~~~~--~~~~--~~~~~---~~~~~-~~~~~v~~l~~spd 103 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ---NKPGD--DPNK--IVDKV---QGLLV-PMKFPIHHLALSCD 103 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC---CCTTC--CTTC--EEECC---CCEEE-CCSSCEEEEEECTT
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh---ccccc--Cccc--ccccC---ccccc-cCCCcccEEEEcCC
Confidence 34588999999999999999887 888875322100 00000 0000 11111 11122 35678999999999
Q ss_pred CcEEE----EecCCCeEEEEeCCCC--------ceeEEeecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEeccc
Q 043942 94 GKTIC----TGSDNATLSIWNPKGG--------ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVD 160 (216)
Q Consensus 94 ~~~l~----t~~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~ 160 (216)
+++|+ +++.|+.|++||++++ +.+..+.. ..+|...|.+++|+|+ +.+|++++.|
T Consensus 104 g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~------------~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 104 NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKL------------LKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEEC------------CCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeec------------cCCCCCceEEEEECCCCCCEEEEEECC
Confidence 99999 8899999999998754 11111111 1127899999999998 7899999999
Q ss_pred CeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 161 GKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 161 ~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
|.+ ..|...|.+++|+|+|++|++++.||.|++||++
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 988 3467799999999999999999999999999998
No 133
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.85 E-value=2.8e-18 Score=127.20 Aligned_cols=201 Identities=9% Similarity=0.014 Sum_probs=145.2
Q ss_pred CCCceeEEeecccc--ceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCC------C--cc-----------
Q 043942 2 NQGDWASEILGHKD--SFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPR------G--GI----------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~--~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~------~--~~----------- 59 (216)
++++.+..+..... .+..++|+|+|+++ +++..++.|.+||+.+++....+.... . .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 19 EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence 46777777763322 47899999999765 566678899999999998887776432 1 11
Q ss_pred c--------------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-
Q 043942 60 E--------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS- 124 (216)
Q Consensus 60 ~--------------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~- 124 (216)
. ++.|.+||+.+++.+..+.. ...+.+++|+|++++++++ ++.|.+||+.+++....+....
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 2 48999999998888777764 4568899999999988888 6889999999988776665422
Q ss_pred ---ccccccc-----------------------------------eEE------------EeeeecCeEEEEeCCCCcEE
Q 043942 125 ---LEFSLNY-----------------------------------WMI------------CTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 125 ---~~~~~~~-----------------------------------~~~------------~~~~~~~v~~~~~~~~~~~l 154 (216)
....+.. ... ...+...+..++|+|+++++
T Consensus 176 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 255 (337)
T 1pby_B 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255 (337)
T ss_dssp TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence 0000000 000 11123456789999999998
Q ss_pred EEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCC
Q 043942 155 VTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPS 207 (216)
Q Consensus 155 ~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~ 207 (216)
+++ ++.+ ......+.+++|+|+|++|++++.++.|++||+.+++....++.
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 887 4555 22235678999999999999888899999999998877655443
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=9.8e-19 Score=130.58 Aligned_cols=178 Identities=14% Similarity=0.060 Sum_probs=140.2
Q ss_pred cccceEEEEEccCCCEEEEEcC-------CCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEEC
Q 043942 13 HKDSFSSLAFSTDGQLLASGGF-------HGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNA 69 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~-------d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~ 69 (216)
....+..++|+|+++++++++. ++.|.+||..+++....+....... .++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456889999999998888774 5689999999999888776533221 5789999999
Q ss_pred CCcceeeeeeccCCC---------eeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 70 DRGAYLNMFSGHGSG---------LTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
.+++.+..+..+... +.+++|+|+++.+++++ .++.|.+||..+++....+.. +
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---------------~ 183 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN---------------T 183 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC---------------C
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC---------------C
Confidence 999888777654322 68899999999877765 588999999999988877763 3
Q ss_pred ecCeEEEEeCCCCcEEEEecccCeE--------------E----eeeCCEEEEEEecCCCeEEEEeC-CCcEEEEEcccc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCVDGKV--------------D----GHIDAIQSLSVSAIRESLVSVSV-DGTARVFEIAEF 199 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~~~~i--------------~----~~~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~~ 199 (216)
...+..++|+|+++++++++.++.+ . ++...+..++|+|++++++.++. ++.|.+||+.++
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 4457889999999999998888877 1 13445788999999997776654 599999999887
Q ss_pred cceeec
Q 043942 200 RRATKA 205 (216)
Q Consensus 200 ~~~~~~ 205 (216)
+....+
T Consensus 264 ~~~~~~ 269 (353)
T 3vgz_A 264 NILAKV 269 (353)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 765443
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=5.1e-18 Score=134.00 Aligned_cols=188 Identities=9% Similarity=0.015 Sum_probs=143.4
Q ss_pred CCCceeEEeeccccceEEEEEcc----CCCEEEEEcC-CCcEEEEECCCCceEEEEeCCC----------C-cc------
Q 043942 2 NQGDWASEILGHKDSFSSLAFST----DGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPR----------G-GI------ 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~----~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~----------~-~~------ 59 (216)
++++++.++.. ...+..++|+| +|+++++++. +++|.+||..+++.++.+..+. . .+
T Consensus 210 ~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 210 KEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp SSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 46778888874 45679999999 9999999884 8999999999888777665310 0 00
Q ss_pred -------------------------------------------------------cCcEEEEEECCCcceeeeeec----
Q 043942 60 -------------------------------------------------------EDSTVWMWNADRGAYLNMFSG---- 80 (216)
Q Consensus 60 -------------------------------------------------------~~~~v~i~d~~~~~~~~~~~~---- 80 (216)
.+++|.+||..+++.+..+..
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 467788888888877776653
Q ss_pred cCCCeeEEEEcCC-CcEEEEec-CCCeEEEEeCCC-------CceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942 81 HGSGLTCGDFTTD-GKTICTGS-DNATLSIWNPKG-------GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 81 ~~~~v~~~~~~~~-~~~l~t~~-~d~~i~~wd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (216)
|.+....+ ++|+ +..++++. .|++|.+||+.+ .+.++.+.. +...+..++++|++
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~---------------~g~~~~~v~~~pdg 432 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG---------------QGGGSLFIKTHPKS 432 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---------------SCSCCCCEECCTTC
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc---------------CCCCceEEEcCCCC
Confidence 54433333 4676 66677765 689999999998 778888876 77778899999999
Q ss_pred cEEEEecc-------cCeE-----------------------EeeeCCEEEEEEecCCCeEEEE-----eCCCcEEEEEc
Q 043942 152 KYLVTGCV-------DGKV-----------------------DGHIDAIQSLSVSAIRESLVSV-----SVDGTARVFEI 196 (216)
Q Consensus 152 ~~l~~~~~-------~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~-----~~d~~v~vw~~ 196 (216)
++|++++. ++.| ..+...+..+.|+|+|+.+.++ +.|+.|.|||.
T Consensus 433 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 433 SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 99999872 4444 1235688999999999988865 24799999999
Q ss_pred ccccceeecC
Q 043942 197 AEFRRATKAP 206 (216)
Q Consensus 197 ~~~~~~~~~~ 206 (216)
++++....++
T Consensus 513 ~t~~~~~~i~ 522 (543)
T 1nir_A 513 KTLKLKAVVK 522 (543)
T ss_dssp TTTEEEEEEC
T ss_pred CCceEEEeec
Confidence 9998877665
No 136
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.83 E-value=4.8e-18 Score=134.17 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=139.5
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEEC--CCCceEEEEeCC--------------CCcc------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDT--SSRNLQCTVEGP--------------RGGI------ 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~--~~~~~~~~~~~~--------------~~~~------ 59 (216)
.+++++.++..+.. +.+++|+|+|++|++++.|+.|++||+ .+++.+.++... ....
T Consensus 167 ~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~ 245 (543)
T 1nir_A 167 DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY 245 (543)
T ss_dssp TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE
T ss_pred CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc
Confidence 56888888884433 889999999999999999999999999 788777666531 1211
Q ss_pred cCcEEEEEECCCcceeeeeec----------cC-CCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeE--Eeecccc
Q 043942 60 EDSTVWMWNADRGAYLNMFSG----------HG-SGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFH--AIRRSSL 125 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~--~~~~~~~ 125 (216)
.+++|.+||..+++++..+.. |. ..+..+.++|++. ++++...++.|.+||+.+.+.+. .+.
T Consensus 246 ~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---- 321 (543)
T 1nir_A 246 WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---- 321 (543)
T ss_dssp ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE----
T ss_pred cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec----
Confidence 578999999999998887764 22 2688999999765 55677789999999999876544 222
Q ss_pred cccccceEEEeeeecCeEEEEeCCCCcEEEEec-ccCeE--------------E----eeeCCEEEEEEecC-CCeEEEE
Q 043942 126 EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-VDGKV--------------D----GHIDAIQSLSVSAI-RESLVSV 185 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~i--------------~----~~~~~i~~~~~~~~-~~~l~s~ 185 (216)
+...+..+.|+|+|+++++++ .++.+ . .|......+ ++|+ +.+++++
T Consensus 322 ------------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 322 ------------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp ------------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred ------------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence 345677899999999876554 46666 1 243333333 4677 6667776
Q ss_pred e-CCCcEEEEEccc-------ccceeecCCc
Q 043942 186 S-VDGTARVFEIAE-------FRRATKAPSY 208 (216)
Q Consensus 186 ~-~d~~v~vw~~~~-------~~~~~~~~~~ 208 (216)
. .|++|.+||+.+ .+.+..++.+
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~ 419 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 419 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcC
Confidence 5 589999999988 6666665554
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=7.2e-18 Score=125.01 Aligned_cols=183 Identities=15% Similarity=0.135 Sum_probs=128.8
Q ss_pred CCCce-eEEeeccccceEEEEEccCCCEEEEEcCCC---cEEEEECCCCceEEEEeCCCCcc----------------cC
Q 043942 2 NQGDW-ASEILGHKDSFSSLAFSTDGQLLASGGFHG---LVQNRDTSSRNLQCTVEGPRGGI----------------ED 61 (216)
Q Consensus 2 ~~g~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~vwd~~~~~~~~~~~~~~~~~----------------~~ 61 (216)
++++. ...+..+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+.... .+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETT
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCC
Confidence 45666 667777776666699999999999555553 89999999998887776543321 44
Q ss_pred cE-EEEEECCCccee----eeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCce---eEEeecccccccccce
Q 043942 62 ST-VWMWNADRGAYL----NMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGEN---FHAIRRSSLEFSLNYW 132 (216)
Q Consensus 62 ~~-v~i~d~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~ 132 (216)
+. +.+|++.....+ .........+..++|+|+++++ +++..++.|.+||+.+++. +..+.
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----------- 218 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----------- 218 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----------
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----------
Confidence 56 999998753322 1122344568999999999965 4555789999999998887 55555
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecc-cCeE---------E------ee-----eC---CEEEEEEecCCCeEEEEe-C
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV---------D------GH-----ID---AIQSLSVSAIRESLVSVS-V 187 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i---------~------~~-----~~---~i~~~~~~~~~~~l~s~~-~ 187 (216)
....+..++|+|+|+++++++. ++.+ . .. .. ....++|+|+|++|++++ .
T Consensus 219 -----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 219 -----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp -----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred -----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 3356788999999997766543 4445 0 00 01 123479999999886555 4
Q ss_pred CCcEEEEEccccc
Q 043942 188 DGTARVFEIAEFR 200 (216)
Q Consensus 188 d~~v~vw~~~~~~ 200 (216)
++.|.+||+....
T Consensus 294 ~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 294 SRELKVFTISGKV 306 (331)
T ss_dssp TTEEEEEETTSCE
T ss_pred CCcEEEEEecCCc
Confidence 6799999998654
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=8e-19 Score=143.32 Aligned_cols=187 Identities=10% Similarity=0.035 Sum_probs=132.6
Q ss_pred ccceEEEEEccCCCEEEEEcC-CC-----cEEEEECCCCceEEEEeCCCCc------------------------c----
Q 043942 14 KDSFSSLAFSTDGQLLASGGF-HG-----LVQNRDTSSRNLQCTVEGPRGG------------------------I---- 59 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~-d~-----~v~vwd~~~~~~~~~~~~~~~~------------------------~---- 59 (216)
...+.+++|+|||++|++++. |+ .|++||+.+++....+..+... +
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 346899999999999999998 88 8999999999877666543211 1
Q ss_pred -----------cCcEEEEEECCCcc--eeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccc
Q 043942 60 -----------EDSTVWMWNADRGA--YLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLE 126 (216)
Q Consensus 60 -----------~~~~v~i~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~ 126 (216)
.++.|++||+.++. ....+..|...+..++|+|||++|++++ ++.|++||+.+++...........
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 45889999999873 4456677888899999999999999887 468999999987765443321000
Q ss_pred ccccc--eEEEeeeecCeEEEEeCCCCcEEEEecccC---------------------------------eE------E-
Q 043942 127 FSLNY--WMICTSLYDGVTCLSWPGTSKYLVTGCVDG---------------------------------KV------D- 164 (216)
Q Consensus 127 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---------------------------------~i------~- 164 (216)
. ... ..+.......+..+.|+|||++|++++.++ .+ .
T Consensus 195 ~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 195 I-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp E-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred e-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0 000 000000011247799999999998886553 22 1
Q ss_pred ----------eeeCCEEEEEEecCCCeEEEEeC-----CCcEEEEEccccccee
Q 043942 165 ----------GHIDAIQSLSVSAIRESLVSVSV-----DGTARVFEIAEFRRAT 203 (216)
Q Consensus 165 ----------~~~~~i~~~~~~~~~~~l~s~~~-----d~~v~vw~~~~~~~~~ 203 (216)
.|...+..++| |||++|++++. +..|++||+.+++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 326 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRV 326 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEE
Confidence 24456889999 99999987653 5689999998876543
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=1.2e-17 Score=124.11 Aligned_cols=171 Identities=11% Similarity=0.100 Sum_probs=122.6
Q ss_pred ccccceEEEEEccCCCEEEEEcCC-CcEEEEECC--CCc--eEEEEeCCCCcc----------------cCcEEEEEEC-
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFH-GLVQNRDTS--SRN--LQCTVEGPRGGI----------------EDSTVWMWNA- 69 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d-~~v~vwd~~--~~~--~~~~~~~~~~~~----------------~~~~v~i~d~- 69 (216)
.|...+.+++|+|+|++|++++.+ +.|++|++. +++ .+..+..+.... .++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 467788999999999988888876 999999997 554 334444322111 4888999999
Q ss_pred --CCcceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCC-CceeEEe----ecccccccccceEEEeeeecC
Q 043942 70 --DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKG-GENFHAI----RRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 70 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 141 (216)
.+.+.+..+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++..... .. .....
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~~ 179 (343)
T 1ri6_A 115 DGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT--------------VEGAG 179 (343)
T ss_dssp TTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC--------------STTCC
T ss_pred CCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccccc--------------CCCCC
Confidence 444455555533 4588999999999888777 899999999987 5443221 11 02346
Q ss_pred eEEEEeCCCCcEEEEec-ccCeEE---------------ee---------eCCEEEEEEecCCCeEE-EEeCCCcEEEEE
Q 043942 142 VTCLSWPGTSKYLVTGC-VDGKVD---------------GH---------IDAIQSLSVSAIRESLV-SVSVDGTARVFE 195 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~-~~~~i~---------------~~---------~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~ 195 (216)
+..++|+|+++++++++ .++.+. .. ...+..++|+|+|++|+ ++..++.|++|+
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 78899999999776554 666650 00 12455799999998877 455789999999
Q ss_pred cc
Q 043942 196 IA 197 (216)
Q Consensus 196 ~~ 197 (216)
+.
T Consensus 260 ~~ 261 (343)
T 1ri6_A 260 VS 261 (343)
T ss_dssp EC
T ss_pred Ec
Confidence 98
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.80 E-value=2.3e-17 Score=122.29 Aligned_cols=157 Identities=9% Similarity=-0.019 Sum_probs=114.1
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcce-eeeee
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAY-LNMFS 79 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~-~~~~~ 79 (216)
++++.+..+..+...+ +++|+|+|+++++++. ++.|.+||+ .+++. ...+.
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~--------------------------~~~~~~~~~~~ 80 (331)
T 3u4y_A 28 DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET--------------------------QLEPPKVVAIQ 80 (331)
T ss_dssp TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC--------------------------SSSSCEEEEEE
T ss_pred cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC--------------------------CCCceeEEecc
Confidence 5678888877776777 9999999997776664 555555554 44444 44455
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCC---eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNA---TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
.+.....+++|+|++++++++..++ .|.+||+.+++.+..+. .......++|+|+|+++++
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----------------~~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----------------IPYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----------------CCTTEEEEEECTTSSCEEE
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----------------CCCCccceEECCCCCEEEE
Confidence 5555555599999999999665553 89999999998877765 3445689999999986655
Q ss_pred e-cccCe-EE------------------eeeCCEEEEEEecCCCeEEE-EeCCCcEEEEEcccccc
Q 043942 157 G-CVDGK-VD------------------GHIDAIQSLSVSAIRESLVS-VSVDGTARVFEIAEFRR 201 (216)
Q Consensus 157 ~-~~~~~-i~------------------~~~~~i~~~~~~~~~~~l~s-~~~d~~v~vw~~~~~~~ 201 (216)
+ ..++. +. .....+..++|+|+|++++. +..++.|++||+.+++.
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 5 44355 41 11246789999999996654 45689999999998776
No 141
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=6e-17 Score=120.61 Aligned_cols=199 Identities=8% Similarity=-0.021 Sum_probs=138.2
Q ss_pred CCCceeEEeeccc-cceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCCC---------cc-----------
Q 043942 2 NQGDWASEILGHK-DSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPRG---------GI----------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~-~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------~~----------- 59 (216)
++++.+.++..+. ..+..++|+|+|+++ ++...++.|.+||+.+++....+..+.. .+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 108 (349)
T 1jmx_B 29 ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 108 (349)
T ss_dssp TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEE
Confidence 4677777776543 257899999999865 4566789999999999988877764321 11
Q ss_pred --c------------CcEEEEEECCCcce---eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 60 --E------------DSTVWMWNADRGAY---LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 60 --~------------~~~v~i~d~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
. ++.|.+||+.+++. +..+. +...+.+++|+|+++ +++++. .|.+||+.+++....+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~ 184 (349)
T 1jmx_B 109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPL 184 (349)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECS
T ss_pred EcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccc
Confidence 2 48999999988543 33333 344688999999999 555544 399999999987776654
Q ss_pred ccccc----------------------cccceEE-------------------------------EeeeecCeEEEEeCC
Q 043942 123 SSLEF----------------------SLNYWMI-------------------------------CTSLYDGVTCLSWPG 149 (216)
Q Consensus 123 ~~~~~----------------------~~~~~~~-------------------------------~~~~~~~v~~~~~~~ 149 (216)
..... .+..... .......+..++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 264 (349)
T 1jmx_B 185 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 264 (349)
T ss_dssp TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECS
T ss_pred cccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecC
Confidence 32000 0000000 001123567888999
Q ss_pred -CCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 150 -TSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 150 -~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
++++++++ ++.+ ......+.+++|+|++++|++++.++.|++||+.+++.+..++
T Consensus 265 ~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 265 KDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 99998888 5555 1233457899999999999888889999999999888765543
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.79 E-value=8.7e-18 Score=136.83 Aligned_cols=184 Identities=12% Similarity=0.059 Sum_probs=125.7
Q ss_pred CCCceeEEeecccc---ceEEEEEccCCCEEEEEcCC---------CcEEEEECCCCceEEEEeCCCC---cc-------
Q 043942 2 NQGDWASEILGHKD---SFSSLAFSTDGQLLASGGFH---------GLVQNRDTSSRNLQCTVEGPRG---GI------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~d---------~~v~vwd~~~~~~~~~~~~~~~---~~------- 59 (216)
++|+....+.+|.. .|.+++|||||++|++++.+ +.+.+||+.+++. ..+..... .+
T Consensus 45 ~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP 123 (723)
T 1xfd_A 45 ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP 123 (723)
T ss_dssp GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS
T ss_pred CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC
Confidence 45677777776664 49999999999999999764 7788999998876 33322111 01
Q ss_pred --------cCcEEEEEECCCcceeeeeeccCCCe------------------eEEEEcCCCcEEEEecCCC---------
Q 043942 60 --------EDSTVWMWNADRGAYLNMFSGHGSGL------------------TCGDFTTDGKTICTGSDNA--------- 104 (216)
Q Consensus 60 --------~~~~v~i~d~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~t~~~d~--------- 104 (216)
.++.|++||+.+++.......+...+ .+++|+|||+.|++++.|+
T Consensus 124 dG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 124 KGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp STTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred CCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 56799999999887766555444333 7899999999999887543
Q ss_pred -------------------------eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 105 -------------------------TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 105 -------------------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
.|++||+.+++....+...... ..+...+..++|+|||+++++...
T Consensus 204 ~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~SpDg~~l~~~~~ 274 (723)
T 1xfd_A 204 TYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP---------RMREYYITMVKWATSTKVAVTWLN 274 (723)
T ss_dssp CCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG---------GGSSEEEEEEEESSSSEEEEEEEE
T ss_pred ccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC---------CCccceeEEEEEeCCCeEEEEEEc
Confidence 7889999887754544431000 002467889999999998876543
Q ss_pred c----CeE--------------Ee-eeCCE----EEEEEecCCCeEEE--EeCCC------cEEEEE
Q 043942 160 D----GKV--------------DG-HIDAI----QSLSVSAIRESLVS--VSVDG------TARVFE 195 (216)
Q Consensus 160 ~----~~i--------------~~-~~~~i----~~~~~~~~~~~l~s--~~~d~------~v~vw~ 195 (216)
. ..+ .. +...+ ..++|+|||+.|+. +..++ .|++||
T Consensus 275 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 275 RAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred CCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 2 222 11 22333 27899999998775 44566 466677
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.79 E-value=1e-16 Score=119.06 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=119.8
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECC---CCceEEEEeCCCCcc----------------cCcEEEE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTS---SRNLQCTVEGPRGGI----------------EDSTVWM 66 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~---~~~~~~~~~~~~~~~----------------~~~~v~i 66 (216)
+..+..+. .+..++|+|++++|++++ .++.|.+||+. ..+....+..+.... .++.|.+
T Consensus 77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 155 (343)
T 1ri6_A 77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICL 155 (343)
T ss_dssp EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEE
Confidence 34454444 788999999999877665 48889999994 334444444322211 5789999
Q ss_pred EECCC-cceee----eeec-cCCCeeEEEEcCCCcEEEE-ecCCCeEEEEeCCC--Cce--eEEeecccccccccceEEE
Q 043942 67 WNADR-GAYLN----MFSG-HGSGLTCGDFTTDGKTICT-GSDNATLSIWNPKG--GEN--FHAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 67 ~d~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~t-~~~d~~i~~wd~~~--~~~--~~~~~~~~~~~~~~~~~~~ 135 (216)
||+.+ ++... .+.. ....+..++|+|+++++++ +..++.+.+||+.. ++. ...+...... .
T Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~--~------ 227 (343)
T 1ri6_A 156 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN--F------ 227 (343)
T ss_dssp EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT--C------
T ss_pred EEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc--c------
Confidence 99987 54432 2222 3347889999999997654 45899999999953 432 2222110000 0
Q ss_pred eeeecCeEEEEeCCCCcEEEE-ecccCeE-----------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEc
Q 043942 136 TSLYDGVTCLSWPGTSKYLVT-GCVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEI 196 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~l~~-~~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~ 196 (216)
.....+..++|+|+++++++ ...++.+ ......+..++|+|+|++|++++ .++.+.+|++
T Consensus 228 -~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 -SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp -CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred -cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 01345678999999988774 4456665 11123477899999999888877 5899999966
Q ss_pred c
Q 043942 197 A 197 (216)
Q Consensus 197 ~ 197 (216)
.
T Consensus 307 d 307 (343)
T 1ri6_A 307 V 307 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.79 E-value=4.8e-18 Score=138.74 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=120.8
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCC---ceEEEEeCCCCcc---------------cCcEEEEEECCCcceeee
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSR---NLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~ 77 (216)
.|.+++|||||++|++++. +.|++||+.++ +. ..+..+...+ .++.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC-CBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE-EEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence 3889999999999999886 99999999887 33 2232222211 567899999998876655
Q ss_pred eeccCCC----------------eeEEEEcCCCcEEEEecCCC---------------------------------eEEE
Q 043942 78 FSGHGSG----------------LTCGDFTTDGKTICTGSDNA---------------------------------TLSI 108 (216)
Q Consensus 78 ~~~~~~~----------------v~~~~~~~~~~~l~t~~~d~---------------------------------~i~~ 108 (216)
...+... +..++|+|||++|++++.|+ .|++
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4433332 47899999999999987665 7899
Q ss_pred EeCCC-CceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-----cCeE--------------EeeeC
Q 043942 109 WNPKG-GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-----DGKV--------------DGHID 168 (216)
Q Consensus 109 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~~~i--------------~~~~~ 168 (216)
||+.+ ++........ .+...+..++| |||++|++++. +..+ ..+..
T Consensus 268 ~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 333 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGK-------------EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP 333 (741)
T ss_dssp ECSSTTCCCEEECCCS-------------CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS
T ss_pred EECCCCCceEEecCCC-------------CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC
Confidence 99988 7654433210 15567899999 99999887654 2222 22222
Q ss_pred ----CEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 169 ----AIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 169 ----~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.+..++|+|||+++++++.|+.+++|.+.
T Consensus 334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp SCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred CcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence 34578999999988899999988888776
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.79 E-value=1.5e-17 Score=135.10 Aligned_cols=177 Identities=11% Similarity=0.074 Sum_probs=125.9
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--c------------cCcEEEEEECCC-----ccee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--I------------EDSTVWMWNADR-----GAYL 75 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--~------------~~~~v~i~d~~~-----~~~~ 75 (216)
..|.+++|+|| +.++.+. ++.+++||+.+++........... + .++.|++||+.+ ++..
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~ 159 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI 159 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence 46999999999 6666554 599999999988765544321111 0 688999999998 7765
Q ss_pred eeeeccCCC--------------eeEEEEcCCCcEEEEec---------------------------------CCCeEEE
Q 043942 76 NMFSGHGSG--------------LTCGDFTTDGKTICTGS---------------------------------DNATLSI 108 (216)
Q Consensus 76 ~~~~~~~~~--------------v~~~~~~~~~~~l~t~~---------------------------------~d~~i~~ 108 (216)
.....+... +.+++|+|||++|++++ .+..|++
T Consensus 160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~ 239 (706)
T 2z3z_A 160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGI 239 (706)
T ss_dssp ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEE
T ss_pred EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEE
Confidence 544433332 48999999999999987 4577999
Q ss_pred EeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC-----eE--------------E--eee
Q 043942 109 WNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG-----KV--------------D--GHI 167 (216)
Q Consensus 109 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~-----~i--------------~--~~~ 167 (216)
||+.+++........ .+...+..++|+|||+++++++.++ .+ . .+.
T Consensus 240 ~d~~~~~~~~~~~~~-------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 240 YHLATGKTVYLQTGE-------------PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp EETTTTEEEECCCCS-------------CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred EECCCCceEeeccCC-------------CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 999988754433210 1456789999999999988876554 22 1 111
Q ss_pred C---CEEEEEEec--CCCeEEEEeCCCcEEEEEcc-cccceeecC
Q 043942 168 D---AIQSLSVSA--IRESLVSVSVDGTARVFEIA-EFRRATKAP 206 (216)
Q Consensus 168 ~---~i~~~~~~~--~~~~l~s~~~d~~v~vw~~~-~~~~~~~~~ 206 (216)
. .+..++|+| +|+++++++.|+.+++|.+. +++....+.
T Consensus 307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~ 351 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT 351 (706)
T ss_dssp SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence 1 135679999 99999999999999999887 444444443
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=4.7e-16 Score=116.09 Aligned_cols=187 Identities=13% Similarity=0.167 Sum_probs=121.7
Q ss_pred eeEEeeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCC-C--ceEEEEeCCC--------------------Ccc--
Q 043942 6 WASEILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSS-R--NLQCTVEGPR--------------------GGI-- 59 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~-~--~~~~~~~~~~--------------------~~~-- 59 (216)
.+..+..+...+..++|+|+|++|++++ .++.|.+|++.. + +.+..+.... ..+
T Consensus 77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 3444455777889999999999888887 679999999963 3 2233332210 001
Q ss_pred ---cCcEEEEEECC-Cccee--eeeecc-CCCeeEEEEcCCCcEEEE-ecCCCeEEEEeCCC--Ccee--EEeecccccc
Q 043942 60 ---EDSTVWMWNAD-RGAYL--NMFSGH-GSGLTCGDFTTDGKTICT-GSDNATLSIWNPKG--GENF--HAIRRSSLEF 127 (216)
Q Consensus 60 ---~~~~v~i~d~~-~~~~~--~~~~~~-~~~v~~~~~~~~~~~l~t-~~~d~~i~~wd~~~--~~~~--~~~~~~~~~~ 127 (216)
.++.|.+||+. +++.. ..+..+ ...+..++|+|+|+++++ ...++.+.+|++.. ++.. ..+......
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~- 235 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD- 235 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT-
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC-
Confidence 57789999998 45432 222222 236788999999996655 56789999999874 4432 222210000
Q ss_pred cccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeE-----------------EeeeCCEEEEEEecCCCeEEEEeC-C
Q 043942 128 SLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKV-----------------DGHIDAIQSLSVSAIRESLVSVSV-D 188 (216)
Q Consensus 128 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i-----------------~~~~~~i~~~~~~~~~~~l~s~~~-d 188 (216)
. .....+..++|+|+|++++++ ..++.+ ..+...+..++|+|+|++|++++. +
T Consensus 236 -~-------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 236 -Y-------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp -C-------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred -C-------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 0 011457889999999987554 445655 122345789999999998888776 4
Q ss_pred CcEEEEEc--ccccc
Q 043942 189 GTARVFEI--AEFRR 201 (216)
Q Consensus 189 ~~v~vw~~--~~~~~ 201 (216)
+.+.+|++ .+++.
T Consensus 308 ~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 308 DNATLYARDLTSGKL 322 (347)
T ss_dssp TEEEEEEECTTTCCE
T ss_pred CcEEEEEEeCCCCeE
Confidence 89999955 44443
No 147
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.77 E-value=2.1e-18 Score=140.47 Aligned_cols=179 Identities=9% Similarity=0.056 Sum_probs=127.7
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc---c----------------c---------CcEEEEE
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---I----------------E---------DSTVWMW 67 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---~----------------~---------~~~v~i~ 67 (216)
.+.+++|+|||+++++ +.|+.|++||..+++....+..+... + . ++.+++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 78999999999999887777665431 1 1 3789999
Q ss_pred ECCCcce--eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee-------
Q 043942 68 NADRGAY--LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL------- 138 (216)
Q Consensus 68 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 138 (216)
|+.+++. +.....|...+..++|+|||+.|++++. +.|++||+.+++............ ...++
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------~~~g~~~~v~~e 169 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------IYNGLSDWLYEE 169 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT------EEEEECCHHHHH
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc------eECcccceeEEE
Confidence 9998875 2222334455889999999999999876 789999999887765544311000 00001
Q ss_pred --ecCeEEEEeCCCCcEEEEecccC----------------------------------eE--------------Ee---
Q 043942 139 --YDGVTCLSWPGTSKYLVTGCVDG----------------------------------KV--------------DG--- 165 (216)
Q Consensus 139 --~~~v~~~~~~~~~~~l~~~~~~~----------------------------------~i--------------~~--- 165 (216)
...+..+.|+|||++|++++.++ .+ ..
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 11347899999999999887542 23 11
Q ss_pred ---eeCCEEEEEEecCCCeEEEEeC----CCcEEEEEcccccce
Q 043942 166 ---HIDAIQSLSVSAIRESLVSVSV----DGTARVFEIAEFRRA 202 (216)
Q Consensus 166 ---~~~~i~~~~~~~~~~~l~s~~~----d~~v~vw~~~~~~~~ 202 (216)
+...+..++|+|||++|++.+. +..|++||+.+++..
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~ 293 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence 1346788999999998876643 357999999887643
No 148
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=2.8e-18 Score=136.67 Aligned_cols=165 Identities=15% Similarity=-0.000 Sum_probs=117.5
Q ss_pred cccceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcc--------------------------------
Q 043942 13 HKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGI-------------------------------- 59 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------------- 59 (216)
+..+|++++|+|||++||+++. ||++++|++.+++..+....+...+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 3568999999999999999887 9999999986543322111110000
Q ss_pred ------------------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC----Ce
Q 043942 60 ------------------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN----AT 105 (216)
Q Consensus 60 ------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----~~ 105 (216)
.++.+.+||+.+++...... +.. .+++|+|||++|++++.+ +.
T Consensus 100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~ 176 (582)
T 3o4h_A 100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVS 176 (582)
T ss_dssp TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEE
T ss_pred CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeE
Confidence 22223355555554333322 222 789999999999988877 78
Q ss_pred EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC--eE-------------EeeeCCE
Q 043942 106 LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG--KV-------------DGHIDAI 170 (216)
Q Consensus 106 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--~i-------------~~~~~~i 170 (216)
|++||+.+++.. .+.. +...+..++|+|||+.|+++..++ .+ ..|...+
T Consensus 177 i~~~d~~~g~~~-~l~~---------------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 240 (582)
T 3o4h_A 177 LFTSNLSSGGLR-VFDS---------------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDF 240 (582)
T ss_dssp EEEEETTTCCCE-EECC---------------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHH
T ss_pred EEEEcCCCCCce-Eeec---------------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcCh
Confidence 999999988765 3443 667789999999999999877777 44 1233344
Q ss_pred EEEE--------EecCCCeEEEEeCCCcEEEEEc
Q 043942 171 QSLS--------VSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 171 ~~~~--------~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
..++ |+|||.++++++.|+.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 4455 9999988889999999999998
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.75 E-value=9.2e-16 Score=115.16 Aligned_cols=171 Identities=17% Similarity=0.154 Sum_probs=115.1
Q ss_pred cccceEEEEEccCCCEEEEEcCC----CcEEEEECCC--Cce--EEEEeCCCCcc---------------cCcEEEEEEC
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFH----GLVQNRDTSS--RNL--QCTVEGPRGGI---------------EDSTVWMWNA 69 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d----~~v~vwd~~~--~~~--~~~~~~~~~~~---------------~~~~v~i~d~ 69 (216)
+...+..++|+|+|++|++++.+ +.|.+|++.. ++. +.....+.... .++.+.+|++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~ 127 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI 127 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence 56677889999999999998876 7999998865 432 22332211111 5789999999
Q ss_pred CCcceeeee------ec--------cCCCeeEEEEcCCCcEEEEe-cCCCeEEEEeCCCCce------eE------Eeec
Q 043942 70 DRGAYLNMF------SG--------HGSGLTCGDFTTDGKTICTG-SDNATLSIWNPKGGEN------FH------AIRR 122 (216)
Q Consensus 70 ~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~~~~~------~~------~~~~ 122 (216)
.+...+..+ .+ +...+.+++|+|++++++++ ..++.|.+|++..... +. ....
T Consensus 128 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 128 GQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp CTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred CCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 754322211 11 12235789999999966554 4689999999875431 11 1111
Q ss_pred ccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-ccCeE-------------------EeeeCCEEEEEEecCCCeE
Q 043942 123 SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-VDGKV-------------------DGHIDAIQSLSVSAIRESL 182 (216)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~~i-------------------~~~~~~i~~~~~~~~~~~l 182 (216)
.....+..++|+|+|+++++++ .++.+ ..+......++|+|+|++|
T Consensus 208 --------------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l 273 (361)
T 3scy_A 208 --------------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYL 273 (361)
T ss_dssp --------------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEE
T ss_pred --------------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEE
Confidence 0345578899999999887766 46666 0111335699999999998
Q ss_pred EEEeC--CCcEEEEEcc
Q 043942 183 VSVSV--DGTARVFEIA 197 (216)
Q Consensus 183 ~s~~~--d~~v~vw~~~ 197 (216)
+++.. ++.|.+|++.
T Consensus 274 ~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 274 YASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEECSSSCEEEEEEEC
T ss_pred EEECCCCCCEEEEEEEc
Confidence 76655 4899999996
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.75 E-value=4.5e-16 Score=116.20 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=114.7
Q ss_pred eccccceEEEEEccCCCEEEEEcC---CCcEEEEECCCCc--eEEEEeCCCCcc-----------------cCcEEEEEE
Q 043942 11 LGHKDSFSSLAFSTDGQLLASGGF---HGLVQNRDTSSRN--LQCTVEGPRGGI-----------------EDSTVWMWN 68 (216)
Q Consensus 11 ~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~vwd~~~~~--~~~~~~~~~~~~-----------------~~~~v~i~d 68 (216)
..+...+..++|+|+|+ |++++. ++.|++|++.+++ .+..+..+.... .++.+.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 34556778899999999 555543 6899999997765 333322111111 568999999
Q ss_pred CCC-c--ceeeeeec---------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCceeEEeecccccccccceEEE
Q 043942 69 ADR-G--AYLNMFSG---------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGENFHAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 69 ~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~ 135 (216)
+.. + ..+..+.. +...+.+++|+|+++.+++...++.|.+||+. +++........
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~------------ 182 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT------------ 182 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE------------
Confidence 962 2 23333321 11247889999999977777788999999998 45432211100
Q ss_pred eeeecCeEEEEeCCCCcEEEEe-cccCeE-----E-------------eee------CCEEEEEEecCCCeEE-EEeCCC
Q 043942 136 TSLYDGVTCLSWPGTSKYLVTG-CVDGKV-----D-------------GHI------DAIQSLSVSAIRESLV-SVSVDG 189 (216)
Q Consensus 136 ~~~~~~v~~~~~~~~~~~l~~~-~~~~~i-----~-------------~~~------~~i~~~~~~~~~~~l~-s~~~d~ 189 (216)
......+..++|+|+|++++++ ..++.+ . ... ..+..++|+|+|++|+ +...++
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~ 262 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN 262 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence 0022356789999999976664 445554 0 000 2377899999999874 556689
Q ss_pred cEEEEEccc
Q 043942 190 TARVFEIAE 198 (216)
Q Consensus 190 ~v~vw~~~~ 198 (216)
.|.+|++..
T Consensus 263 ~v~v~~~~~ 271 (347)
T 3hfq_A 263 TLAVFAVTA 271 (347)
T ss_dssp EEEEEEECG
T ss_pred EEEEEEECC
Confidence 999999973
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.74 E-value=1.1e-16 Score=135.36 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=132.7
Q ss_pred cccceEEEEEc-cCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc---------------cCcEEE-EEECCCcce
Q 043942 13 HKDSFSSLAFS-TDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI---------------EDSTVW-MWNADRGAY 74 (216)
Q Consensus 13 h~~~v~~~~~s-~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~---------------~~~~v~-i~d~~~~~~ 74 (216)
|...+.+++|+ |||++|++++ ++.+.+|+..+++... +..+.. .+ .+..+. +||+.+++.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~ 371 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA 371 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCc
Confidence 45578999999 9999999888 8899999998776433 222222 00 245677 889887765
Q ss_pred eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 75 LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 75 ~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
.. +.+|...+..++|+|||++|++++.++.|++||+.+++....... +...+..++|+|||++|
T Consensus 372 ~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---------------~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 372 EK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---------------REAMITDFTISDNSRFI 435 (1045)
T ss_dssp EE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---------------SSSCCCCEEECTTSCEE
T ss_pred eE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---------------CCCCccceEECCCCCeE
Confidence 43 447878899999999999999999999999999999887776654 77788999999999999
Q ss_pred EEecccC----------eE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 155 VTGCVDG----------KV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 155 ~~~~~~~----------~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
++++.++ .+ ..|...+..++|+|+|++|++++.++...+|+...
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred EEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 8877643 34 34556688899999999999999888888887653
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=2.2e-16 Score=117.56 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=93.0
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Ccc----------------cCcEEEEEECCCcceeeeeec
Q 043942 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GGI----------------EDSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~----------------~~~~v~i~d~~~~~~~~~~~~ 80 (216)
.++++++++++++++.++.|++||..+++....+..+. ... .++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888999999999999999999999888887554 211 578899999999888776653
Q ss_pred cC------CCeeEEEEcCCCcEEEEecCC------------CeEEEEeCCCCcee---EEeecccccccccceEEEeeee
Q 043942 81 HG------SGLTCGDFTTDGKTICTGSDN------------ATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 81 ~~------~~v~~~~~~~~~~~l~t~~~d------------~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.. ..+..++|+|+++++++++.+ +.|.+||+.+++.. ..+. +.
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----------------~~ 147 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----------------MP 147 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----------------CC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----------------CC
Confidence 22 237899999999999998865 89999999875432 2332 23
Q ss_pred cCeEEEEeCCCCcEEEEec
Q 043942 140 DGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~ 158 (216)
..+.+++|+|+|+ +++++
T Consensus 148 ~~~~~~~~s~dg~-l~~~~ 165 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYVAG 165 (349)
T ss_dssp SSCCCEEECTTSC-EEEES
T ss_pred CcccceeECCCCc-EEEcc
Confidence 3567777888887 44443
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=4.4e-17 Score=118.33 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=118.8
Q ss_pred CceeEEeecc-ccceEEEEEccCCCEEEEEc--CCCcEEEE--ECCCCceEEEEeCCC----------Cc-c-----cCc
Q 043942 4 GDWASEILGH-KDSFSSLAFSTDGQLLASGG--FHGLVQNR--DTSSRNLQCTVEGPR----------GG-I-----EDS 62 (216)
Q Consensus 4 g~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~--~d~~v~vw--d~~~~~~~~~~~~~~----------~~-~-----~~~ 62 (216)
++.......| ...+.+++|+|++++|++++ .++..++| +..+++. ..+..+. .. + .++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 151 (297)
T 2ojh_A 73 PSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQ 151 (297)
T ss_dssp CSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETT
T ss_pred CCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCC
Confidence 5555555555 36789999999999999998 33455555 5454432 2221111 11 1 577
Q ss_pred EEEEEECCC-cceeeeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC-CCceeEEeecccccccccceEEEeeee
Q 043942 63 TVWMWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK-GGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 63 ~v~i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.+.+|+++. +.....+..+...+.+++|+|+++.++.++ .++.+.+|++. .+.....+.. +.
T Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---------------~~ 216 (297)
T 2ojh_A 152 VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---------------SA 216 (297)
T ss_dssp EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC---------------CS
T ss_pred ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec---------------CC
Confidence 788888542 233455666788899999999999887665 58899999886 4555555554 56
Q ss_pred cCeEEEEeCCCCcEEEEecccC-----------eE----------------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942 140 DGVTCLSWPGTSKYLVTGCVDG-----------KV----------------DGHIDAIQSLSVSAIRESLVSVSVDG 189 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~~~~~-----------~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~ 189 (216)
..+..+.|+|++++|++++.++ .+ ..|...+..++|+|++++|++++.+.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 6788999999999998887652 23 25566788899999999998887653
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.74 E-value=1.5e-15 Score=128.42 Aligned_cols=191 Identities=9% Similarity=-0.038 Sum_probs=138.0
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cC----------
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------ED---------- 61 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~---------- 61 (216)
..+.+|...+..++|+|||++|++++.++.|++||+.+++.......+...+ .+
T Consensus 372 ~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 372 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 4455788899999999999999999999999999999998877775554432 22
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee-------EEeecc--c--------
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF-------HAIRRS--S-------- 124 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~-------~~~~~~--~-------- 124 (216)
+.|++||+.+++ ...+..|...+..++|+|+|+.|++++.++....|+....... ..+... .
T Consensus 452 ~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1045)
T 1k32_A 452 QAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP 530 (1045)
T ss_dssp EEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCC
T ss_pred CeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCc
Confidence 489999999877 6667778888999999999999999999888888886643321 111100 0
Q ss_pred ---------cccc--ccceEEEeeeecCeEEEEeCCCCcEEEEe-----------cc--cCeE----------EeeeCCE
Q 043942 125 ---------LEFS--LNYWMICTSLYDGVTCLSWPGTSKYLVTG-----------CV--DGKV----------DGHIDAI 170 (216)
Q Consensus 125 ---------~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----------~~--~~~i----------~~~~~~i 170 (216)
.... .........+...+..+.++|++.++++. +. ...+ ......+
T Consensus 531 ~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~v 610 (1045)
T 1k32_A 531 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNL 610 (1045)
T ss_dssp GGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEE
T ss_pred CccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEeecCc
Confidence 0000 00111222355778999999999877751 11 2223 1122567
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 171 QSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 171 ~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
..++|||||++|++++.+ .+++||+.+++
T Consensus 611 ~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 611 TDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 899999999999998866 89999998876
No 155
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.73 E-value=3.6e-16 Score=127.09 Aligned_cols=169 Identities=12% Similarity=0.056 Sum_probs=120.4
Q ss_pred eEEEEEccCCCEEEEEc---------------------------------CCCcEEEEECCCCceEEEEeC--CCCcc--
Q 043942 17 FSSLAFSTDGQLLASGG---------------------------------FHGLVQNRDTSSRNLQCTVEG--PRGGI-- 59 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~---------------------------------~d~~v~vwd~~~~~~~~~~~~--~~~~~-- 59 (216)
+.+++|+|||++|++++ .+..|++||+.+++....... +...+
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 48999999999999987 446799999988765433221 11111
Q ss_pred --------------cC-----cEEEEEECCCcceeeeee-c-cCC---CeeEEEEcC--CCcEEEEecCCCeEEEEeCC-
Q 043942 60 --------------ED-----STVWMWNADRGAYLNMFS-G-HGS---GLTCGDFTT--DGKTICTGSDNATLSIWNPK- 112 (216)
Q Consensus 60 --------------~~-----~~v~i~d~~~~~~~~~~~-~-~~~---~v~~~~~~~--~~~~l~t~~~d~~i~~wd~~- 112 (216)
.+ ..|++||+.+++....+. . +.. .+..++|+| +|+++++++.|+.+++|++.
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~ 342 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT 342 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence 22 489999999884333332 1 222 246789999 99999999999999999876
Q ss_pred CCceeEEeecccccccccceEEEeeeecCeEE-EEeCCCCcEEEEecc-cC----eE------------EeeeCCEEEEE
Q 043942 113 GGENFHAIRRSSLEFSLNYWMICTSLYDGVTC-LSWPGTSKYLVTGCV-DG----KV------------DGHIDAIQSLS 174 (216)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~-~~----~i------------~~~~~~i~~~~ 174 (216)
++.....+.. +...+.. ++|+|+++.|+.++. ++ .+ ..+...+..++
T Consensus 343 ~~~~~~~l~~---------------~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 407 (706)
T 2z3z_A 343 TGRLIRQVTK---------------GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDLTPESGMHRTQ 407 (706)
T ss_dssp TSCEEEECCC---------------SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEESCCSSSEEEEE
T ss_pred CCCEEEecCC---------------CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceeccCCCceEEEE
Confidence 5666666654 5566766 799999987765544 33 33 23456789999
Q ss_pred EecCCCeEEEEeCC----CcEEEEEccccc
Q 043942 175 VSAIRESLVSVSVD----GTARVFEIAEFR 200 (216)
Q Consensus 175 ~~~~~~~l~s~~~d----~~v~vw~~~~~~ 200 (216)
|+|+|++++....+ +.+++||+.+++
T Consensus 408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 99999988765433 569999998765
No 156
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.72 E-value=1.6e-15 Score=112.25 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=76.5
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEEeCCC---Ccc----------------cCcEEEEEECCCcceeeeeecc-----C
Q 043942 27 QLLASGGFHGLVQNRDTSSRNLQCTVEGPR---GGI----------------EDSTVWMWNADRGAYLNMFSGH-----G 82 (216)
Q Consensus 27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~----------------~~~~v~i~d~~~~~~~~~~~~~-----~ 82 (216)
++|++++.++.|++||..+++....+.... ... .++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478999999999999999999888886443 111 5789999999998887766532 1
Q ss_pred CCeeEEEEcCCCcEEEEec------------CCCeEEEEeCCCCceeEEee
Q 043942 83 SGLTCGDFTTDGKTICTGS------------DNATLSIWNPKGGENFHAIR 121 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~------------~d~~i~~wd~~~~~~~~~~~ 121 (216)
..+..++|+|+++++++++ .++.|.+||+.+++....+.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 132 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence 2678999999999998886 57999999999888776665
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=1.8e-15 Score=114.39 Aligned_cols=184 Identities=13% Similarity=0.053 Sum_probs=131.6
Q ss_pred CCCceeEEeeccccceEE-----EEEccCCCEEEEEcC-CC--cEEEEECCCCceEEEEeCCCCcc--------------
Q 043942 2 NQGDWASEILGHKDSFSS-----LAFSTDGQLLASGGF-HG--LVQNRDTSSRNLQCTVEGPRGGI-------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~-----~~~s~~~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~-------------- 59 (216)
.+|..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+....
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 457778888888766666 889999999998887 66 38888999887766554443211
Q ss_pred --cCcEEEEEECCCcceeeeeeccCCCeeEEE--EcCCCcEEEEe----------------------cCCCeEEEEeCCC
Q 043942 60 --EDSTVWMWNADRGAYLNMFSGHGSGLTCGD--FTTDGKTICTG----------------------SDNATLSIWNPKG 113 (216)
Q Consensus 60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~t~----------------------~~d~~i~~wd~~~ 113 (216)
.++.+++||+.+++....+..+...+.... ++|+++.++.. ..+..|.+||+.+
T Consensus 98 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred EeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 567899999999887766666666554444 48999988742 2457899999998
Q ss_pred CceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccC------eE-------------Eeee--CCEE
Q 043942 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDG------KV-------------DGHI--DAIQ 171 (216)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~------~i-------------~~~~--~~i~ 171 (216)
++...... +...+..+.|+| +|+.|+.....+ .+ ..+. ..+.
T Consensus 178 g~~~~l~~----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (388)
T 3pe7_A 178 GESTVILQ----------------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT 241 (388)
T ss_dssp CCEEEEEE----------------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE
T ss_pred CceEEeec----------------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc
Confidence 86544433 556788999999 999887665432 33 1222 2477
Q ss_pred EEEEecCCCeEEEEeC-CC----cEEEEEcccccc
Q 043942 172 SLSVSAIRESLVSVSV-DG----TARVFEIAEFRR 201 (216)
Q Consensus 172 ~~~~~~~~~~l~s~~~-d~----~v~vw~~~~~~~ 201 (216)
...|+|||+.|+..+. ++ .|++||+.+++.
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 8899999998865443 22 399999988763
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=1.1e-14 Score=109.64 Aligned_cols=173 Identities=8% Similarity=0.024 Sum_probs=118.2
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECC-CCceEEEEeC--CCC----------c---c-----------------c
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTS-SRNLQCTVEG--PRG----------G---I-----------------E 60 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~~~~~--~~~----------~---~-----------------~ 60 (216)
...+..++|+|+|++|++++.+ .|.+|++. +++....... ... . + .
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 3467899999999999999888 99999997 7765443221 111 0 0 2
Q ss_pred CcEEEEEECC-Ccceeeeee----ccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCC-CCceeE--Eeecccccccccc
Q 043942 61 DSTVWMWNAD-RGAYLNMFS----GHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPK-GGENFH--AIRRSSLEFSLNY 131 (216)
Q Consensus 61 ~~~v~i~d~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~-~~~~~~--~~~~~~~~~~~~~ 131 (216)
++.+.+|++. .++....+. .+...+.+++|+|+|+++++++ .++.|++||+. +++... .+...
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------- 189 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-------- 189 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS--------
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC--------
Confidence 4567888886 455443333 2456789999999999888765 46899999998 676432 22110
Q ss_pred eEEEeeeecCeEEEEeCCCCcEEEEecc-cCeEE--------e------------------eeC------CEEEEE-Eec
Q 043942 132 WMICTSLYDGVTCLSWPGTSKYLVTGCV-DGKVD--------G------------------HID------AIQSLS-VSA 177 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i~--------~------------------~~~------~i~~~~-~~~ 177 (216)
.+...+..++|+|+|+++++++. ++.+. + |.. .+..++ |+|
T Consensus 190 -----~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 190 -----DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp -----STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred -----CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence 02356889999999998877654 44440 0 000 377899 999
Q ss_pred CCCeEEEEeCC-C-----cEEEEEcc-ccc
Q 043942 178 IRESLVSVSVD-G-----TARVFEIA-EFR 200 (216)
Q Consensus 178 ~~~~l~s~~~d-~-----~v~vw~~~-~~~ 200 (216)
||++|+++..+ + .|.+|++. +++
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 99988776543 3 89999996 444
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=6.2e-14 Score=105.17 Aligned_cols=178 Identities=14% Similarity=0.078 Sum_probs=115.3
Q ss_pred eeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEE----E--------------------Ee-CCCCc-c---
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQC----T--------------------VE-GPRGG-I--- 59 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~----~--------------------~~-~~~~~-~--- 59 (216)
...+......+++ ++++|++++ .++.|.+|++.....+. . +. .+... +
T Consensus 95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~ 172 (361)
T 3scy_A 95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLAD 172 (361)
T ss_dssp EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEE
T ss_pred eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEE
Confidence 3334456667777 788777666 57899999987532211 0 11 11111 1
Q ss_pred --cCcEEEEEECCCcce------e-------eeeeccCCCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeE--Eee
Q 043942 60 --EDSTVWMWNADRGAY------L-------NMFSGHGSGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFH--AIR 121 (216)
Q Consensus 60 --~~~~v~i~d~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~--~~~ 121 (216)
.++.|.+|++..... + .....+...+..++|+|+++++++++ .++.|.+||+.+++... .+.
T Consensus 173 ~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~ 252 (361)
T 3scy_A 173 DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA 252 (361)
T ss_dssp ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence 578899998874331 1 11222445678999999999887766 68999999998775422 222
Q ss_pred cccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc--CeE-----------------EeeeCCEEEEEEecCCCeE
Q 043942 122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD--GKV-----------------DGHIDAIQSLSVSAIRESL 182 (216)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~i-----------------~~~~~~i~~~~~~~~~~~l 182 (216)
... .+......++|+|+|++|+++..+ +.+ ......+..++|+|+|++|
T Consensus 253 ~~~------------~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l 320 (361)
T 3scy_A 253 ADT------------VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYL 320 (361)
T ss_dssp SCS------------SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEE
T ss_pred cCC------------CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEE
Confidence 100 023456899999999988776654 544 0112357789999999988
Q ss_pred EEEe-CCCcEEEEEcc--cccc
Q 043942 183 VSVS-VDGTARVFEIA--EFRR 201 (216)
Q Consensus 183 ~s~~-~d~~v~vw~~~--~~~~ 201 (216)
++++ .++.|.+|++. +++.
T Consensus 321 ~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 321 LVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEETTTTEEEEEEECTTTCCE
T ss_pred EEEECCCCCEEEEEEECCCCcE
Confidence 8877 57899997654 4443
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=129.34 Aligned_cols=190 Identities=12% Similarity=0.053 Sum_probs=122.5
Q ss_pred CCCceeEEeecccc---ceEEEEEccCCCEEEEEcC---------CCcEEEEECCCCceE--EEEeCC--------CC-c
Q 043942 2 NQGDWASEILGHKD---SFSSLAFSTDGQLLASGGF---------HGLVQNRDTSSRNLQ--CTVEGP--------RG-G 58 (216)
Q Consensus 2 ~~g~~~~~~~~h~~---~v~~~~~s~~~~~l~s~~~---------d~~v~vwd~~~~~~~--~~~~~~--------~~-~ 58 (216)
.+|+....+.+|.. .+.+++|||||++|++++. ++.|++||+.+++.. ..+... .+ .
T Consensus 44 ~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~ 123 (719)
T 1z68_A 44 ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSK 123 (719)
T ss_dssp SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTC
T ss_pred CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCE
Confidence 45666666655544 3899999999999998876 789999999988762 111111 11 0
Q ss_pred c---cCcEEEEEECCCcceeeee-eccCCCe-----------------eEEEEcCCCcEEEEecCCC-------------
Q 043942 59 I---EDSTVWMWNADRGAYLNMF-SGHGSGL-----------------TCGDFTTDGKTICTGSDNA------------- 104 (216)
Q Consensus 59 ~---~~~~v~i~d~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~t~~~d~------------- 104 (216)
+ .++.|++||+.+++..... .++...+ .+++|+|||+.|++++.|.
T Consensus 124 la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~ 203 (719)
T 1z68_A 124 LAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGD 203 (719)
T ss_dssp EEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCS
T ss_pred EEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCC
Confidence 1 6789999999887765432 2222212 5899999999999987552
Q ss_pred ---------------------eEEEEeCCCCcee--EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC
Q 043942 105 ---------------------TLSIWNPKGGENF--HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG 161 (216)
Q Consensus 105 ---------------------~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 161 (216)
.|++||+.+++.. ..+.... . ..++...+..++|+||++++++....+
T Consensus 204 ~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~SpD~~~~~~~~~~~ 274 (719)
T 1z68_A 204 EQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-M--------IASSDYYFSWLTWVTDERVCLQWLKRV 274 (719)
T ss_dssp SSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-H--------HHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred CCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc-c--------CCCCcceEEEeEEeCCCeEEEEEeccc
Confidence 7889998877642 1111100 0 001566789999999988776633211
Q ss_pred ----eE---E-------------------eeeCCEE-----EEEEecCCCeEEE--EeCCC--cEEEEEccccc
Q 043942 162 ----KV---D-------------------GHIDAIQ-----SLSVSAIRESLVS--VSVDG--TARVFEIAEFR 200 (216)
Q Consensus 162 ----~i---~-------------------~~~~~i~-----~~~~~~~~~~l~s--~~~d~--~v~vw~~~~~~ 200 (216)
.+ . .|...+. .+.|+|||+.|+. ...++ .|.+|++.+++
T Consensus 275 ~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 275 QNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp TTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred cCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 12 1 2233454 7899999996654 44555 56667766554
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=3.7e-15 Score=121.90 Aligned_cols=176 Identities=7% Similarity=0.044 Sum_probs=122.7
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--------c-------------c---------CcEE
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--------I-------------E---------DSTV 64 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--------~-------------~---------~~~v 64 (216)
....+++|+|||++++++ |+.|++||+.+++....+..+... . . .+.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999887776655421 0 1 1677
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee-----
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY----- 139 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 139 (216)
.+||+.+++.. .+..+.+.+...+|+|||+.|+.+ .++.|++||+.+++..+........ ....++.
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~------~~~~g~~~~v~~ 166 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED------IIYNGITDWVYE 166 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT------TEEESBCCHHHH
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc------ceecCccccccc
Confidence 89999988764 466677889999999999999988 4689999999987754422211000 0000011
Q ss_pred ----cCeEEEEeCCCCcEEEEecccCe------------------------------------E------E---e-----
Q 043942 140 ----DGVTCLSWPGTSKYLVTGCVDGK------------------------------------V------D---G----- 165 (216)
Q Consensus 140 ----~~v~~~~~~~~~~~l~~~~~~~~------------------------------------i------~---~----- 165 (216)
.....+.|+|||+.|+..+.|.. + . +
T Consensus 167 ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~ 246 (740)
T 4a5s_A 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATS 246 (740)
T ss_dssp HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCE
T ss_pred chhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceE
Confidence 22245889999998887643211 1 1 1
Q ss_pred -----------eeCCEEEEEEecCCCeEEEEeC----CCcEEEEEccccc
Q 043942 166 -----------HIDAIQSLSVSAIRESLVSVSV----DGTARVFEIAEFR 200 (216)
Q Consensus 166 -----------~~~~i~~~~~~~~~~~l~s~~~----d~~v~vw~~~~~~ 200 (216)
|...+..++|+|||+.++.... +..|++||+.+++
T Consensus 247 ~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 247 IQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 3445788999999997665432 3479999998876
No 162
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.66 E-value=1.1e-13 Score=102.72 Aligned_cols=186 Identities=12% Similarity=-0.001 Sum_probs=137.8
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC------Ccc---------------c
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR------GGI---------------E 60 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~~~---------------~ 60 (216)
++++.+.++.. ......++++++++.+++...++.|.+||..+++....+.... .+. .
T Consensus 72 ~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~ 150 (328)
T 3dsm_A 72 NTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSY 150 (328)
T ss_dssp TTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTT
T ss_pred cccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCC
Confidence 46777787853 4567899999998655555589999999999999888777544 211 2
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC----------CeEEEEeCCCCceeEEeeccccccccc
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN----------ATLSIWNPKGGENFHAIRRSSLEFSLN 130 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~~~ 130 (216)
++.|.++|+.+++.+..+.. ......++++|+|++++++..+ +.|.++|..+++....+...
T Consensus 151 ~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~------- 222 (328)
T 3dsm_A 151 QNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK------- 222 (328)
T ss_dssp CCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-------
T ss_pred CCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-------
Confidence 78899999999988777764 3446789999999988777655 78999999988877666431
Q ss_pred ceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------------EeeeCCEEEEEEec-CCCeEEEE----eCCC
Q 043942 131 YWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDAIQSLSVSA-IRESLVSV----SVDG 189 (216)
Q Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~-~~~~l~s~----~~d~ 189 (216)
.......++++|+++.++++.. .+ .........++++| +++++++. ..++
T Consensus 223 -------~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~ 293 (328)
T 3dsm_A 223 -------LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG 293 (328)
T ss_dssp -------TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred -------CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence 1236789999999988887654 33 11135688999999 55555665 5689
Q ss_pred cEEEEEcccccceeecC
Q 043942 190 TARVFEIAEFRRATKAP 206 (216)
Q Consensus 190 ~v~vw~~~~~~~~~~~~ 206 (216)
.|.+||.. ++.+..++
T Consensus 294 ~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 294 IVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEEEECTT-CCEEEEEE
T ss_pred EEEEECCC-CCEEEEEE
Confidence 99999987 76655443
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=8.3e-15 Score=110.78 Aligned_cols=183 Identities=13% Similarity=0.022 Sum_probs=122.4
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------------
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------------- 59 (216)
++++..+...+|...+..+.|+|||+.|+.++.++.+++||+.+++.......+....
T Consensus 68 ~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 147 (388)
T 3pe7_A 68 NTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRRE 147 (388)
T ss_dssp TTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGG
T ss_pred CCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCc
Confidence 4555555555666666678999999999999999999999999987665444332200
Q ss_pred ------------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCC------CeEEEEeCCCC
Q 043942 60 ------------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDN------ATLSIWNPKGG 114 (216)
Q Consensus 60 ------------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------~~i~~wd~~~~ 114 (216)
.+..|++||+.+++... +..+...+..++|+| +++.|+....+ ..|.++|...+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 148 DWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp GCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ccccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 23789999999886544 444667789999999 99988876653 37888888755
Q ss_pred ceeEEeecccccccccceEEEeeee--cCeEEEEeCCCCcEEEEecc-cC----eE------------EeeeCC------
Q 043942 115 ENFHAIRRSSLEFSLNYWMICTSLY--DGVTCLSWPGTSKYLVTGCV-DG----KV------------DGHIDA------ 169 (216)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~-~~----~i------------~~~~~~------ 169 (216)
.. ..+.. +. ..+..+.|+|+|+.|+..+. ++ .+ ......
T Consensus 227 ~~-~~l~~---------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 290 (388)
T 3pe7_A 227 NM-RKVKT---------------HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMS 290 (388)
T ss_dssp CC-EESCC---------------CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEE
T ss_pred ce-EEeee---------------CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeee
Confidence 43 33322 22 34678899999997755433 22 13 000001
Q ss_pred -EEEEEEecCCCeEEEE---------eCCCcEEEEEcccccc
Q 043942 170 -IQSLSVSAIRESLVSV---------SVDGTARVFEIAEFRR 201 (216)
Q Consensus 170 -i~~~~~~~~~~~l~s~---------~~d~~v~vw~~~~~~~ 201 (216)
.....|+|||+.|+.. ..+..|++||+.+++.
T Consensus 291 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 291 NYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp CTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred cCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 1123699999988753 4467899999987654
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=3.5e-13 Score=97.88 Aligned_cols=171 Identities=9% Similarity=0.092 Sum_probs=120.4
Q ss_pred cccceEEEEE-ccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCC-c-----------c-----cCcEEEEEECCCcc
Q 043942 13 HKDSFSSLAF-STDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRG-G-----------I-----EDSTVWMWNADRGA 73 (216)
Q Consensus 13 h~~~v~~~~~-s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~-~-----------~-----~~~~v~i~d~~~~~ 73 (216)
|...+.++++ .++++++++... ++.|++|| .+++.+..+..... . + .++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 4457889999 467777666643 88999999 56666665532211 0 1 46788888864 45
Q ss_pred eeeeee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942 74 YLNMFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 74 ~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (216)
.+..+. .+...+..++++|+++++++...++.|++||.. ++.+..+.... +...+..++++++|
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g-------------~~~~p~~i~~d~~G 218 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEG-------------ITNYPIGVGINSNG 218 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTT-------------TSCSEEEEEECTTC
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCC-------------ccCCCcEEEECCCC
Confidence 555543 344568999999999988888889999999975 55555554210 22567899999999
Q ss_pred cEEEEecccC-eE-------------Eee--eCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 152 KYLVTGCVDG-KV-------------DGH--IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 152 ~~l~~~~~~~-~i-------------~~~--~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+++++...++ .+ ..+ ...+.+++++|+|+++++ +.|+.|++|++....
T Consensus 219 ~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 219 EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 8888877665 55 111 124779999999987777 579999999986543
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.64 E-value=4.3e-15 Score=121.06 Aligned_cols=174 Identities=7% Similarity=0.062 Sum_probs=118.1
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC------cc-------------c---------CcEEEEEECC
Q 043942 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG------GI-------------E---------DSTVWMWNAD 70 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~------~~-------------~---------~~~v~i~d~~ 70 (216)
+++|+|+|++++++ .|+.|++||..+++....+..+.. .. . ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 78999999655554 699999999999987766654321 11 2 5899999999
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee---------cC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY---------DG 141 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 141 (216)
+++.+.... ....+..++|+|||+.|+++. ++.|++||+.+++........... .+..++. ..
T Consensus 99 ~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 99 NGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------KIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp TTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT------TEEESSCCHHHHHHTTCS
T ss_pred CCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC------CeEcccccceeeeecccC
Confidence 887631111 125688999999999999885 789999999988765432211000 0000111 12
Q ss_pred eEEEEeCCCCcEEEEecccC----------------------------------eE--------E--------------e
Q 043942 142 VTCLSWPGTSKYLVTGCVDG----------------------------------KV--------D--------------G 165 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~----------------------------------~i--------~--------------~ 165 (216)
...++|+|||++|++++.|. .+ . .
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 25899999999999887552 22 1 2
Q ss_pred eeCCEEEEEEecCCCeEEEEeCC----CcEEEEE----cccccc
Q 043942 166 HIDAIQSLSVSAIRESLVSVSVD----GTARVFE----IAEFRR 201 (216)
Q Consensus 166 ~~~~i~~~~~~~~~~~l~s~~~d----~~v~vw~----~~~~~~ 201 (216)
|...+..++|+||++++++.... ..|.+|| +.+++.
T Consensus 251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~ 294 (719)
T 1z68_A 251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC 294 (719)
T ss_dssp SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC
T ss_pred CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce
Confidence 44568999999998877764432 2488899 666544
No 166
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.63 E-value=1e-14 Score=116.15 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=117.9
Q ss_pred eEEEEEccCCC--EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cC----cEEEEEECCCcceeee
Q 043942 17 FSSLAFSTDGQ--LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------ED----STVWMWNADRGAYLNM 77 (216)
Q Consensus 17 v~~~~~s~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~----~~v~i~d~~~~~~~~~ 77 (216)
+...+|+|+|+ .+++++ ++.+.+||+.+++.......+.... .+ ..|++||+.+++.. .
T Consensus 112 ~~~~~~s~dg~~~~~~s~~-~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~ 189 (582)
T 3o4h_A 112 MRILSGVDTGEAVVFTGAT-EDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-V 189 (582)
T ss_dssp BEEEEEEECSSCEEEEEEC-SSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-E
T ss_pred ceeeeeCCCCCeEEEEecC-CCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-E
Confidence 44678888885 344444 4455599999887655544333211 23 77999999988764 6
Q ss_pred eeccCCCeeEEEEcCCCcEEEEecCCC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE--------e
Q 043942 78 FSGHGSGLTCGDFTTDGKTICTGSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS--------W 147 (216)
Q Consensus 78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~ 147 (216)
+..|.+.+..++|+|||+.|+++..++ .|++||+.+++.. .+.. +...+..+. |
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~---------------~~~~~~~~~~~~~~~~~~ 253 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL---------------PSKDFSSYRPTAITWLGY 253 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC---------------SCSHHHHHCCSEEEEEEE
T ss_pred eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC---------------CCcChhhhhhccccceeE
Confidence 677888899999999999999888888 8999999988776 4443 333344444 9
Q ss_pred CCCCcEEEEecccCeEE---------eeeCCEEEEEEecCCCeEEEEeCCC---cEEEEEcc
Q 043942 148 PGTSKYLVTGCVDGKVD---------GHIDAIQSLSVSAIRESLVSVSVDG---TARVFEIA 197 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i~---------~~~~~i~~~~~~~~~~~l~s~~~d~---~v~vw~~~ 197 (216)
+|||.++++++.++.+. .....+.+++|+ +++++++++.+. .+++|+..
T Consensus 254 spdg~~~~~~~~~g~~~l~~~g~~~~~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 254 LPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp CTTSCEEEEEEETTEEEEEETTEEECCCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cCCCcEEEEEEcCCcEEEEEECCeeccCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 99998888888888761 234567899999 999998887774 46666654
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=8.6e-13 Score=95.81 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=124.3
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC------------------CCcc------cCcEEEEEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP------------------RGGI------EDSTVWMWN 68 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------------------~~~~------~~~~v~i~d 68 (216)
+-..+.+++++++++++++...++.|.+||.. ++....+... ...+ .++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44678999999999999988889999999987 5555554321 0101 167888888
Q ss_pred CCCcceeeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEe
Q 043942 69 ADRGAYLNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSW 147 (216)
Q Consensus 69 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 147 (216)
.+++.+..+.. +...+..++++|+++++++...++.|.+||.. ++....+.... +...+..+++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------------~~~~p~~i~~ 171 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------------HLEFPNGVVV 171 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------------TCSSEEEEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC-------------ccCCcEEEEE
Confidence 45666655532 34568999999999988888888999999965 55555553210 3346789999
Q ss_pred CCCCcEEEEecccCeE------------E---eeeCCEEEEEEecCCCeEEEEeCCC-cEEEEEcc
Q 043942 148 PGTSKYLVTGCVDGKV------------D---GHIDAIQSLSVSAIRESLVSVSVDG-TARVFEIA 197 (216)
Q Consensus 148 ~~~~~~l~~~~~~~~i------------~---~~~~~i~~~~~~~~~~~l~s~~~d~-~v~vw~~~ 197 (216)
+|+|+++++...++.+ . ++...+..++++++|+++++...++ .|++|+..
T Consensus 172 ~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 172 NDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp CSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 9999988777767666 1 1125688999999999888887776 99999954
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.60 E-value=4.5e-13 Score=100.83 Aligned_cols=155 Identities=8% Similarity=0.045 Sum_probs=100.1
Q ss_pred cccceEEEEEccCCCEEEEEcC-CCcEEEEECC-CCceEEEEeCCCCcccCcEEEEEECCCcceeeeee--ccCCCeeEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGF-HGLVQNRDTS-SRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFS--GHGSGLTCG 88 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~-~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~--~~~~~v~~~ 88 (216)
+...+.+++|+|||++|++++. ++.|++||+. +++.. .+..+. .|...+..+
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~------------------------~~~~~~~~~~g~~p~~~ 198 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE------------------------LVGSVDAPDPGDHPRWV 198 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE------------------------EEEEEECSSTTCCEEEE
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE------------------------EeeeEecCCCCCCCCEe
Confidence 4567899999999998887653 4566666665 33321 111222 234568899
Q ss_pred EEcCCCcEEEEec-CCCeEEEEeCC--CCceeE---EeecccccccccceEEEeeeec------CeEEEE-eCCCCcEEE
Q 043942 89 DFTTDGKTICTGS-DNATLSIWNPK--GGENFH---AIRRSSLEFSLNYWMICTSLYD------GVTCLS-WPGTSKYLV 155 (216)
Q Consensus 89 ~~~~~~~~l~t~~-~d~~i~~wd~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~v~~~~-~~~~~~~l~ 155 (216)
+|+|+|+++++++ .++.|.+|+++ +++... .+....... .++.. .+..++ |+|+|++|+
T Consensus 199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI--------PDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC--------CCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc--------CCcccccccccccccEEEECCCCCEEE
Confidence 9999999888776 47899999875 455422 222100000 00121 478899 999999888
Q ss_pred EecccC------eE-----------E-----e--eeCCEEEEEEec---CCCeEEEEeCC-CcEEEEEcccc
Q 043942 156 TGCVDG------KV-----------D-----G--HIDAIQSLSVSA---IRESLVSVSVD-GTARVFEIAEF 199 (216)
Q Consensus 156 ~~~~~~------~i-----------~-----~--~~~~i~~~~~~~---~~~~l~s~~~d-~~v~vw~~~~~ 199 (216)
+++.+. .+ . . +...+..++|+| +|++|++++.+ +.|++|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 765432 44 1 0 112345677899 89999988764 89999998754
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=2.2e-13 Score=103.07 Aligned_cols=166 Identities=11% Similarity=-0.053 Sum_probs=114.3
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----------------------------------------
Q 043942 19 SLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---------------------------------------- 58 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---------------------------------------- 58 (216)
.+.|+|||++|+.++.++.|++||+.+++.......+...
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 164 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHT 164 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHT
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccC
Confidence 4789999999999999999999999988765544422210
Q ss_pred ccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC-CCcEEEEecCC------CeEEEEeCCCCceeEEeecccccccccc
Q 043942 59 IEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT-DGKTICTGSDN------ATLSIWNPKGGENFHAIRRSSLEFSLNY 131 (216)
Q Consensus 59 ~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 131 (216)
..+..|++||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..++.......
T Consensus 165 ~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~--------- 234 (396)
T 3c5m_A 165 NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEH--------- 234 (396)
T ss_dssp CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCC---------
T ss_pred CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeecc---------
Confidence 13458999999987765444 4667789999999 78877765533 4688899875543222211
Q ss_pred eEEEeee-ecCeEEEEeCCCCcEEEEeccc-----CeE------------EeeeCCEEEEEEec-CCCeEEEEe------
Q 043942 132 WMICTSL-YDGVTCLSWPGTSKYLVTGCVD-----GKV------------DGHIDAIQSLSVSA-IRESLVSVS------ 186 (216)
Q Consensus 132 ~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~-----~~i------------~~~~~~i~~~~~~~-~~~~l~s~~------ 186 (216)
. ...+..+.|+|+|++|+..+.+ +.+ ........ +.|+| +|+++++++
T Consensus 235 ------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 235 ------AEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp ------CTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC---
T ss_pred ------CCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCccee
Confidence 1 2357788999999987766443 224 11111233 88999 999888754
Q ss_pred ----------CCCcEEEEEcccccc
Q 043942 187 ----------VDGTARVFEIAEFRR 201 (216)
Q Consensus 187 ----------~d~~v~vw~~~~~~~ 201 (216)
.+..|++||+.+++.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBC
T ss_pred eccccccccCCCCcEEEEecccCce
Confidence 347899999877653
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.59 E-value=1e-13 Score=111.99 Aligned_cols=161 Identities=9% Similarity=-0.022 Sum_probs=110.2
Q ss_pred ceeEEeec-----cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCC------cc
Q 043942 5 DWASEILG-----HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADR------GA 73 (216)
Q Consensus 5 ~~~~~~~~-----h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~------~~ 73 (216)
.....+.. |...+.+++|+|||+.|++++.+.. .. ........|++||+.+ +.
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~------~~----------~~~~~~~~i~~~~~~~~~~~~~~~ 178 (662)
T 3azo_A 115 AVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT------GE----------GPSDVRRFLAAVPLDGSAAADRSA 178 (662)
T ss_dssp CCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC------SS----------STTCEEEEEEEEETTSTTTTCGGG
T ss_pred CCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc------CC----------CCCCceeEEEEEECCCCccccCCc
Confidence 34455665 6778899999999999998885410 00 0000235677777776 44
Q ss_pred eeeeee-ccCCCeeEEEEcCCCcEEEEecCC--------CeEEEEeCC-CCc--eeEEeecccccccccceEEEeeeecC
Q 043942 74 YLNMFS-GHGSGLTCGDFTTDGKTICTGSDN--------ATLSIWNPK-GGE--NFHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 74 ~~~~~~-~~~~~v~~~~~~~~~~~l~t~~~d--------~~i~~wd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++. ....+.. .+...
T Consensus 179 ~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~--------------~~~~~ 243 (662)
T 3azo_A 179 V-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG--------------GPEEA 243 (662)
T ss_dssp S-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE--------------ETTBC
T ss_pred e-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC--------------CCCce
Confidence 3 3444 455678889999999999987754 479999999 562 2222221 13577
Q ss_pred eEEEEeCCCCcEEEEecccC--eE--------------EeeeCC--------EEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 142 VTCLSWPGTSKYLVTGCVDG--KV--------------DGHIDA--------IQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~--~i--------------~~~~~~--------i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
+..+.|+|||+++++++.++ .+ ..+... +..++|+|+++++++++. +.+++|.+.
T Consensus 244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 89999999999888887777 34 011111 457889999999999988 999999443
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=5.7e-13 Score=98.91 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=122.8
Q ss_pred CCceeEEee-ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCc-eEEEEeC--------------------C-CCcc
Q 043942 3 QGDWASEIL-GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN-LQCTVEG--------------------P-RGGI 59 (216)
Q Consensus 3 ~g~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~--------------------~-~~~~ 59 (216)
+|+.+..+. ++...+..++++|+|+++++...++.|++||..... .+..+.. + ...+
T Consensus 78 ~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l 157 (329)
T 3fvz_A 78 NAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAV 157 (329)
T ss_dssp TCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred CCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence 456555554 344578899999999999999889999999986542 3333321 0 1111
Q ss_pred ------cCcEEEEEECCCcceeeeeecc----------CCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 60 ------EDSTVWMWNADRGAYLNMFSGH----------GSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 60 ------~~~~v~i~d~~~~~~~~~~~~~----------~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.++.|++|| .++..+..+... -.....++++|+ ++++++...++.|++||..+++.+..+..
T Consensus 158 yv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 158 FVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 256677777 345555555322 234789999998 77788888899999999998888877753
Q ss_pred ccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-------ccCeE-----------------EeeeCCEEEEEEecC
Q 043942 123 SSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-------VDGKV-----------------DGHIDAIQSLSVSAI 178 (216)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~~~~i-----------------~~~~~~i~~~~~~~~ 178 (216)
.. +...+..++++| +..+.+.+ .+..+ ..+...+..++++|+
T Consensus 237 ~~-------------~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 237 AS-------------FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED 302 (329)
T ss_dssp TT-------------TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred cc-------------cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence 21 334566777777 32222221 11121 134566899999999
Q ss_pred CCeEEEEeCCCcEEEEEccc
Q 043942 179 RESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 179 ~~~l~s~~~d~~v~vw~~~~ 198 (216)
|+++++...++.|++|++..
T Consensus 303 G~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SEEEEEESSSCCEEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCCc
Confidence 98888888899999999865
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=1.1e-11 Score=91.87 Aligned_cols=177 Identities=12% Similarity=0.101 Sum_probs=121.9
Q ss_pred ceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cC----cEE
Q 043942 5 DWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------ED----STV 64 (216)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~----~~v 64 (216)
+....+..+...+.+++|+|+|++++++..++.|.+||..+++.......+...+ .+ +.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 4455666777788999999999988888889999999998877654432222111 22 578
Q ss_pred EEEECCCcceeeeee--ccCCCeeEEEEcCCCcEEEEecC------CCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 65 WMWNADRGAYLNMFS--GHGSGLTCGDFTTDGKTICTGSD------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~t~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
.+||..++.....+. .+...+..++++|+++++++... .+.|..+|..+++......
T Consensus 115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------- 179 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------------- 179 (333)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---------------
T ss_pred EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---------------
Confidence 899988766543332 23457899999999988887654 3567777766544332221
Q ss_pred eeecCeEEEEeCCCCcEEEEe-cccCeE---Ee-----------------ee--CCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 137 SLYDGVTCLSWPGTSKYLVTG-CVDGKV---DG-----------------HI--DAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~-~~~~~i---~~-----------------~~--~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
....+..++|+|+++.++.+ ..++.+ .. .. ..+..++++++|+++++...++.|.+
T Consensus 180 -~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~ 258 (333)
T 2dg1_A 180 -NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLV 258 (333)
T ss_dssp -EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred -CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 33457889999999865443 444544 00 00 25677999999998888777899999
Q ss_pred EEcc
Q 043942 194 FEIA 197 (216)
Q Consensus 194 w~~~ 197 (216)
||..
T Consensus 259 ~d~~ 262 (333)
T 2dg1_A 259 FNKR 262 (333)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9984
No 173
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=1.6e-14 Score=109.33 Aligned_cols=184 Identities=8% Similarity=-0.086 Sum_probs=121.9
Q ss_pred CCCceeEEeeccccc-----eEEEEEccCCCEEEEEcCC---CcEEEEECCCCceEEEEeCCCCc---c-----------
Q 043942 2 NQGDWASEILGHKDS-----FSSLAFSTDGQLLASGGFH---GLVQNRDTSSRNLQCTVEGPRGG---I----------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~---~----------- 59 (216)
.+|+.+..+..+... +..++|+|||++|+..... ..+.+||+.+++.......+... .
T Consensus 18 ~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 18 DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEE
T ss_pred CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEE
Confidence 467777777765444 7788999999998876543 46888899887654433222110 1
Q ss_pred --cCcEEEEEECCCcceeeeeeccCCCeeE-------------------EEEcCCCcEEEEe-----cCCCeEEEEeCCC
Q 043942 60 --EDSTVWMWNADRGAYLNMFSGHGSGLTC-------------------GDFTTDGKTICTG-----SDNATLSIWNPKG 113 (216)
Q Consensus 60 --~~~~v~i~d~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~t~-----~~d~~i~~wd~~~ 113 (216)
.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|++||+.+
T Consensus 98 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~ 177 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET 177 (396)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT
T ss_pred EEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC
Confidence 5567999999888765555544432222 3467777766554 4567899999998
Q ss_pred CceeEEeecccccccccceEEEeeeecCeEEEEeCC-CCcEEEEecccC------eE-------------Eee--eCCEE
Q 043942 114 GENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG-TSKYLVTGCVDG------KV-------------DGH--IDAIQ 171 (216)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~------~i-------------~~~--~~~i~ 171 (216)
++...... +...+..+.|+| +++.++..+.++ .+ ..+ ...+.
T Consensus 178 g~~~~~~~----------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 178 GELEVIHQ----------------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT 241 (396)
T ss_dssp CCEEEEEE----------------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred CcEEeecc----------------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence 77654442 556788899999 787666554322 23 111 12477
Q ss_pred EEEEecCCCeEEEEeCC-----CcEEEEEcccccc
Q 043942 172 SLSVSAIRESLVSVSVD-----GTARVFEIAEFRR 201 (216)
Q Consensus 172 ~~~~~~~~~~l~s~~~d-----~~v~vw~~~~~~~ 201 (216)
.++|+|+|++|+..+.+ +.|++||+.+++.
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 88999999988776544 4499999987654
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=1.5e-12 Score=95.11 Aligned_cols=156 Identities=11% Similarity=-0.028 Sum_probs=111.3
Q ss_pred CCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH 81 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 81 (216)
.+..+..+..+.....+++|+|+|+ +++++..++.|..||.. ++ ...+..+
T Consensus 16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~--------------------------~~--~~~~~~~ 67 (296)
T 3e5z_A 16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD--------------------------GQ--LSPEMHP 67 (296)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT--------------------------SC--EEEEESS
T ss_pred CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC--------------------------CC--eEEEECC
Confidence 4555667777777889999999998 77777766666666654 33 2334445
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE----e
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT----G 157 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~ 157 (216)
...+.+++++|+++++++...++.|.+||..+++.......... .....+..++++|+|+++++ +
T Consensus 68 ~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~-----------~~~~~~~~i~~d~~G~l~vtd~~~g 136 (296)
T 3e5z_A 68 SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG-----------KKLNSPNDVCLAPDGSLWFSDPTYG 136 (296)
T ss_dssp CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT-----------EECCCCCCEEECTTSCEEEEECSHH
T ss_pred CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC-----------CCCCCCCCEEECCCCCEEEECCccc
Confidence 66789999999999888887889999999987875433221000 02235678899999998886 3
Q ss_pred c-------------ccCeE------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 158 C-------------VDGKV------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 158 ~-------------~~~~i------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
+ ..+.+ ..+......++|+|+++.+++.+.++.|++|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred cccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence 2 12233 2334567899999999988777778999999987
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1.3e-12 Score=97.02 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=124.0
Q ss_pred ccceEEEEEccCCCEEEEEcCC------------------------CcEEEEECCCCceEEEEeCCC-Cc----------
Q 043942 14 KDSFSSLAFSTDGQLLASGGFH------------------------GLVQNRDTSSRNLQCTVEGPR-GG---------- 58 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d------------------------~~v~vwd~~~~~~~~~~~~~~-~~---------- 58 (216)
-+.+.+++++|+|+++++...+ +.|.+||..+++....+.... ..
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999888877 479999999888776554211 00
Q ss_pred -c-----cCcEEEEEECCCcc-eeeee---------eccCCCeeEEEEcC-CCcEEEEec-CCCeEEEEeCCCCceeEEe
Q 043942 59 -I-----EDSTVWMWNADRGA-YLNMF---------SGHGSGLTCGDFTT-DGKTICTGS-DNATLSIWNPKGGENFHAI 120 (216)
Q Consensus 59 -~-----~~~~v~i~d~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~t~~-~d~~i~~wd~~~~~~~~~~ 120 (216)
+ .++.|++||..... .+..+ .++......++++| ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 1 56778888876432 34444 23344688999999 788888886 699999999 557766665
Q ss_pred ecccccccccceEEEeeeecCeEEEEeCCC-CcEEEEecccCeE----------------EeeeCCEEEEEEec------
Q 043942 121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGT-SKYLVTGCVDGKV----------------DGHIDAIQSLSVSA------ 177 (216)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~~~i----------------~~~~~~i~~~~~~~------ 177 (216)
......... ..+.......++++|+ +.++++...++.| ..+...+..++++|
T Consensus 182 ~~~g~~~~~-----~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 256 (329)
T 3fvz_A 182 GEESSGSSP-----RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV 256 (329)
T ss_dssp CEECCSSSC-----CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred ccCCCCCCC-----CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence 421100000 0003345789999998 7777777667666 11234678888998
Q ss_pred CCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 178 IRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 178 ~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
+|+..++...+..|++|++.+++....+
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 3333333344568999999887766553
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.55 E-value=1.6e-13 Score=112.33 Aligned_cols=190 Identities=10% Similarity=0.035 Sum_probs=116.7
Q ss_pred CCCceeEEeeccccc-----eEEEEEccCCCEEEEEcCC---------CcEEEEECCCCceEEEEeCCCCcc--------
Q 043942 2 NQGDWASEILGHKDS-----FSSLAFSTDGQLLASGGFH---------GLVQNRDTSSRNLQCTVEGPRGGI-------- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~-----v~~~~~s~~~~~l~s~~~d---------~~v~vwd~~~~~~~~~~~~~~~~~-------- 59 (216)
++|+....+.+|... ...++|||||++|+.++.+ +.+.+||+.+++... +..+....
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPd 122 (740)
T 4a5s_A 44 EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPV 122 (740)
T ss_dssp TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEEECSS
T ss_pred CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeEECCC
Confidence 567777777777643 2347899999999998876 566799999886543 22221111
Q ss_pred -------cCcEEEEEECCCcceeee-eeccCCCe-----------------eEEEEcCCCcEEEEecCCC----------
Q 043942 60 -------EDSTVWMWNADRGAYLNM-FSGHGSGL-----------------TCGDFTTDGKTICTGSDNA---------- 104 (216)
Q Consensus 60 -------~~~~v~i~d~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~~l~t~~~d~---------- 104 (216)
.++.|++||+.++...+. ..++...+ ..+.|+|||+.|+.++.|.
T Consensus 123 G~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~ 202 (740)
T 4a5s_A 123 GHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF 202 (740)
T ss_dssp TTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE
T ss_pred CCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEe
Confidence 788999999988765432 22222222 3589999999999875332
Q ss_pred --------------------------eEEEEeCCC---Cc--eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 105 --------------------------TLSIWNPKG---GE--NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 105 --------------------------~i~~wd~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
.|++||+.+ ++ ....+..... ..++...+..++|+|||+.
T Consensus 203 ~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~wspdg~~ 273 (740)
T 4a5s_A 203 YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS---------MLIGDHYLCDVTWATQERI 273 (740)
T ss_dssp CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH---------HHTSCEEEEEEEEEETTEE
T ss_pred ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc---------CCCCCeEEEEEEEeCCCeE
Confidence 366666665 42 1112211000 0014556889999999996
Q ss_pred EEEeccc----CeE----------------------EeeeCCE-----EEEEEecCCCeEE-EEeC-C--CcEEEEEccc
Q 043942 154 LVTGCVD----GKV----------------------DGHIDAI-----QSLSVSAIRESLV-SVSV-D--GTARVFEIAE 198 (216)
Q Consensus 154 l~~~~~~----~~i----------------------~~~~~~i-----~~~~~~~~~~~l~-s~~~-d--~~v~vw~~~~ 198 (216)
++..... ..+ ..+...+ ....|+|||+.|+ ..+. + ..|++|++..
T Consensus 274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 5543221 122 1122233 2688999999877 6654 4 4678888776
Q ss_pred ccc
Q 043942 199 FRR 201 (216)
Q Consensus 199 ~~~ 201 (216)
++.
T Consensus 354 ~~~ 356 (740)
T 4a5s_A 354 KDC 356 (740)
T ss_dssp SSC
T ss_pred Cce
Confidence 543
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.55 E-value=7.6e-12 Score=94.05 Aligned_cols=197 Identities=12% Similarity=0.150 Sum_probs=126.8
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCC-------Cc--c---
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPR-------GG--I--- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~-------~~--~--- 59 (216)
++++.+.++..+..+ .++|+|||+++++++ .++.|.+||..+++.+.++..+. .+ +
T Consensus 39 ~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s 116 (361)
T 2oiz_A 39 TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT 116 (361)
T ss_dssp TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence 467788888877665 899999999999886 36779999999999988876431 11 1
Q ss_pred -----------c-CcEEEEEECCCcceeee-eeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCC-CceeEEee---
Q 043942 60 -----------E-DSTVWMWNADRGAYLNM-FSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKG-GENFHAIR--- 121 (216)
Q Consensus 60 -----------~-~~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~-~~~~~~~~--- 121 (216)
. ++.|.+||+.+++.+.. +. ..+ ...+.+.|++ ..+++.+.||.+.+|++.. ++......
T Consensus 117 pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 117 TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 2 68899999999988776 54 222 2235566654 5666777788888887754 43331111
Q ss_pred ---cc--cc----cccccc---------eEEEee-----------------------eecCeEEEEeCCCCcEEEEecc-
Q 043942 122 ---RS--SL----EFSLNY---------WMICTS-----------------------LYDGVTCLSWPGTSKYLVTGCV- 159 (216)
Q Consensus 122 ---~~--~~----~~~~~~---------~~~~~~-----------------------~~~~v~~~~~~~~~~~l~~~~~- 159 (216)
.. .. ...... ...... .......++++|+++.++++..
T Consensus 195 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 195 MFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp CSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred eEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 00 00 000000 000000 0011112688999887776543
Q ss_pred c----------CeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc--cceeec
Q 043942 160 D----------GKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF--RRATKA 205 (216)
Q Consensus 160 ~----------~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~--~~~~~~ 205 (216)
+ +.+ ..+ . +.+++|+|+|++|++++. +.|.+||..++ +.+..+
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEecC-C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 1 233 222 3 899999999999998886 99999999999 777664
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=3.5e-12 Score=91.66 Aligned_cols=172 Identities=12% Similarity=0.010 Sum_probs=118.5
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC-----------CCcc-----cCcEEEEEECCCcceeeee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP-----------RGGI-----EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-----------~~~~-----~~~~v~i~d~~~~~~~~~~ 78 (216)
..+.+++++++|+++++.. ++.|.+||............. ...+ .++.|.+|+..+.......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~ 145 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP 145 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence 4678899999999777766 889999998765432111011 1111 3566777765544333222
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
......+..++++++++++++...++.|.+||............ ....+..++++++|.++++..
T Consensus 146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT---------------DITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS---------------SCCSEEEEEECTTCCEEEEET
T ss_pred cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc---------------CCCCceEEEECCCCCEEEEEC
Confidence 22334678999999999888877788999999886554332211 225678899999997777766
Q ss_pred ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 159 VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 159 ~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
.++.+ ..+...+.+++++++|+++++...++.|+++++...+..
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH 268 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence 66666 122256899999999998888888999999998876543
No 179
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=4.9e-12 Score=91.58 Aligned_cols=169 Identities=12% Similarity=0.041 Sum_probs=125.6
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-cc--------------cCcEEEEEECCCcceeeeeeccC-CCeeEE
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-GI--------------EDSTVWMWNADRGAYLNMFSGHG-SGLTCG 88 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~--------------~~~~v~i~d~~~~~~~~~~~~~~-~~v~~~ 88 (216)
.+++|++++.++.|.+||.++++.+.++..+.. .. .++.|..||. +++.+..+..+. ..+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~ 82 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGCEMQTA 82 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence 467899999999999999999999998877541 11 5667888888 788888887653 468899
Q ss_pred EEcCCCcEEEEecC-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----
Q 043942 89 DFTTDGKTICTGSD-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---- 163 (216)
Q Consensus 89 ~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---- 163 (216)
.+.|+|+.+++.+. ++.+..+|. +++.+..+....... .+......+...++|+++++...++.+
T Consensus 83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~---------~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d 152 (276)
T 3no2_A 83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE---------RPHAQFRQINKNKKGNYLVPLFATSEVREIA 152 (276)
T ss_dssp EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS---------SGGGSCSCCEECTTSCEEEEETTTTEEEEEC
T ss_pred EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC---------cccccccCceECCCCCEEEEecCCCEEEEEC
Confidence 99999999999887 788888886 688777665321100 011233445667888888888777776
Q ss_pred --------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 164 --------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 164 --------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
......+.++...++|+++++++.++.|..+|..+++.+-+
T Consensus 153 ~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 153 PNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp TTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEE
T ss_pred CCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 22224566778889999999988888999999887776443
No 180
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.51 E-value=5.2e-12 Score=102.95 Aligned_cols=177 Identities=8% Similarity=0.017 Sum_probs=111.5
Q ss_pred cccceEEEEEccCCCEEEEEcCCC-----cEEEEECCCCceEEEEe-CCC-Ccc-------------cC-----------
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHG-----LVQNRDTSSRNLQCTVE-GPR-GGI-------------ED----------- 61 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~-~~~-~~~-------------~~----------- 61 (216)
|...+..++|||||++||.++.++ .|++||+.+++...... ... ..+ .+
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 434688999999999999776543 89999999997765321 111 111 22
Q ss_pred -----cEEEEEECCCccee--eeee--ccCCCeeEEEEcCCCcEEEEecC-----CCeEEEEeCCC------Cc-eeEEe
Q 043942 62 -----STVWMWNADRGAYL--NMFS--GHGSGLTCGDFTTDGKTICTGSD-----NATLSIWNPKG------GE-NFHAI 120 (216)
Q Consensus 62 -----~~v~i~d~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~t~~~-----d~~i~~wd~~~------~~-~~~~~ 120 (216)
..|++|++.+++.. ..+. .+...+..+.|+|||++|+.++. +..|++||+.+ +. ....+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 24999999877522 2222 24556789999999999887764 67899999986 43 23444
Q ss_pred ecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC----eE----------------EeeeC--CEEEEEEecC
Q 043942 121 RRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG----KV----------------DGHID--AIQSLSVSAI 178 (216)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~i----------------~~~~~--~i~~~~~~~~ 178 (216)
.. +...+.. .|+|+|..|+..+..+ .+ ..+.. .+..++|+++
T Consensus 283 ~~---------------~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 283 ID---------------NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp EC---------------SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred eC---------------CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence 33 2223322 3556665544433221 12 22323 5778899888
Q ss_pred CCeEEEEeCCCc--EEEEEcccccceeec
Q 043942 179 RESLVSVSVDGT--ARVFEIAEFRRATKA 205 (216)
Q Consensus 179 ~~~l~s~~~d~~--v~vw~~~~~~~~~~~ 205 (216)
+.++++...|+. |++|++.+++....+
T Consensus 347 ~~lv~~~~~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 347 NFLVLCYLHDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred CEEEEEEEECCEEEEEEEECCCCCEEEec
Confidence 888888888885 556676556544333
No 181
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=3.1e-11 Score=87.38 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=117.7
Q ss_pred CCCceeEEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-c----------------c-Cc
Q 043942 2 NQGDWASEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-I----------------E-DS 62 (216)
Q Consensus 2 ~~g~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~----------------~-~~ 62 (216)
++|+.+.++..+. ..+.++.++|+|++|+ +.++.|..||. +++.+.++..+... + . ++
T Consensus 23 ~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 23 DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence 5889999998776 4789999999999888 34778999999 88888888765321 1 2 45
Q ss_pred EEEEEECCCcceeeeeec------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEe
Q 043942 63 TVWMWNADRGAYLNMFSG------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICT 136 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (216)
.+..+|. +++.+..+.. +......+++.++|+++++...++.|..||.. |+.+..+..
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~-------------- 163 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL-------------- 163 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC--------------
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC--------------
Confidence 5666664 5666555431 22245567788999999999999999999998 998888864
Q ss_pred eeecCeEEEEeCCCCcEEEEecccCeE--------------Eee------eCCEEEEEEecCCCeEEEEe
Q 043942 137 SLYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGH------IDAIQSLSVSAIRESLVSVS 186 (216)
Q Consensus 137 ~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~------~~~i~~~~~~~~~~~l~s~~ 186 (216)
...+..+...+++++++++..++.+ ... ...+..+...++|+++++..
T Consensus 164 --~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 164 --SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp --SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred --CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 1234445666777777776666555 111 12377888889999888763
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.49 E-value=2e-11 Score=89.13 Aligned_cols=171 Identities=11% Similarity=0.056 Sum_probs=112.4
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC-------cc---cCc--------------
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG-------GI---EDS-------------- 62 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-------~~---~~~-------------- 62 (216)
...+..+...+.+++++|+|+++++...++.|.+||..+++.......... .+ .+|
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~ 140 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKP 140 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCG
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccc
Confidence 456666777899999999999888887788999999988765433221100 01 233
Q ss_pred -------------EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC-CCce---eEEeecccc
Q 043942 63 -------------TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK-GGEN---FHAIRRSSL 125 (216)
Q Consensus 63 -------------~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~-~~~~---~~~~~~~~~ 125 (216)
.|..++.. ++ +..+..+......++|+|+++.+++.+.++.|.+||+. +++. ...+..
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~--- 215 (296)
T 3e5z_A 141 EEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV--- 215 (296)
T ss_dssp GGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC---
T ss_pred cccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC---
Confidence 33334433 32 23344455667899999999988778888999999997 4543 222211
Q ss_pred cccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEE-ecCCCeEEEEeCCCcE
Q 043942 126 EFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSV-SAIRESLVSVSVDGTA 191 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~-~~~~~~l~s~~~d~~v 191 (216)
....+..++++++|++.++. ++.+ ..+.. +.+++| +|+++.|++++.+ .+
T Consensus 216 ------------~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l 279 (296)
T 3e5z_A 216 ------------EPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EF 279 (296)
T ss_dssp ------------SSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-EE
T ss_pred ------------CCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-eE
Confidence 33445678889999866655 4444 22333 788999 5899888888765 34
Q ss_pred EEEEccc
Q 043942 192 RVFEIAE 198 (216)
Q Consensus 192 ~vw~~~~ 198 (216)
.-++.++
T Consensus 280 ~~~~~~~ 286 (296)
T 3e5z_A 280 WSIETNV 286 (296)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 4444443
No 183
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.47 E-value=9.4e-13 Score=106.32 Aligned_cols=176 Identities=12% Similarity=0.050 Sum_probs=118.4
Q ss_pred EeeccccceEEEEEccCCCEEEEE--cCCCcEEEEECCCCceEEEEeCC-----------------------CCc-c---
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASG--GFHGLVQNRDTSSRNLQCTVEGP-----------------------RGG-I--- 59 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~-----------------------~~~-~--- 59 (216)
.+.+|...+..+++++++-++++. +.++...+|....+.....+..+ ... +
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 355788999999999887777777 66888999985433222222211 111 1
Q ss_pred --cCcEEEEEECC--Ccceeeeeec-----cCCCeeEEEEcCCCcEEEEecCC----------CeEEEEeCCC------C
Q 043942 60 --EDSTVWMWNAD--RGAYLNMFSG-----HGSGLTCGDFTTDGKTICTGSDN----------ATLSIWNPKG------G 114 (216)
Q Consensus 60 --~~~~v~i~d~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~t~~~d----------~~i~~wd~~~------~ 114 (216)
.+..|+++++. .......+.. |...+..++|+|||+.|++++.+ ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 23445666655 2033344544 56678899999999999988876 5899999987 4
Q ss_pred ceeEEee-cccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc-------------------C---eE----Eeee
Q 043942 115 ENFHAIR-RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD-------------------G---KV----DGHI 167 (216)
Q Consensus 115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-------------------~---~i----~~~~ 167 (216)
+. ..+. . +...+..++|+|||++|+.++.+ | .. ..+.
T Consensus 178 ~~-~~l~~~---------------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 178 AV-RELSDD---------------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp GS-EESSCS---------------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred ce-eEEEec---------------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 43 3333 2 44566778999999998876533 2 11 2235
Q ss_pred CCEEEEEEecCCCeEEEEeCCC--cEEEEEccccc
Q 043942 168 DAIQSLSVSAIRESLVSVSVDG--TARVFEIAEFR 200 (216)
Q Consensus 168 ~~i~~~~~~~~~~~l~s~~~d~--~v~vw~~~~~~ 200 (216)
..+..+.|+|||+++++++.++ .|.+||+.+++
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 6788999999999878888888 56666654544
No 184
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.46 E-value=3.3e-12 Score=96.15 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=102.9
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCc
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGK 95 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 95 (216)
+++.+++++...++++|+.++ +++|++.+.+.... . ..+. .++.... .+.. |+.++| +++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~--~-----~~~~--------~~~~~~~-~lp~-V~~l~f--d~~ 98 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT--S-----DSTP--------LTFKWEK-EIPD-VIFVCF--HGD 98 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH--S-----SSCC--------CCCSEEE-ECTT-EEEEEE--ETT
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc--c-----cccc--------ccceEEe-eCCC-eeEEEE--CCC
Confidence 689999999999999999874 55587653320000 0 0000 0111122 3556 999999 899
Q ss_pred EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE----------Ee
Q 043942 96 TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV----------DG 165 (216)
Q Consensus 96 ~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i----------~~ 165 (216)
+|+++ .++.|++||+++......... +..++.++.+.+. .+++++.||.+ ..
T Consensus 99 ~L~v~-~~~~l~v~dv~sl~~~~~~~~---------------~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 99 QVLVS-TRNALYSLDLEELSEFRTVTS---------------FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp EEEEE-ESSEEEEEESSSTTCEEEEEE---------------CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEE-cCCcEEEEEchhhhccCccce---------------eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence 99998 889999999987765544443 5556777666543 27778888887 44
Q ss_pred eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 166 HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 166 ~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+...|++++|||+| ++.+..||++++|+....+
T Consensus 161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EEESEEEEEECSSE--EEEEETTSCEEEEEEETTE
T ss_pred ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcc
Confidence 56799999999999 6778899999999887666
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.44 E-value=2.5e-11 Score=90.36 Aligned_cols=161 Identities=11% Similarity=0.135 Sum_probs=103.2
Q ss_pred cceEEEEEccCCCEEEEEcCC---C--cEEEEECCCCceEEEEeCCC---------Cc-c----c---------------
Q 043942 15 DSFSSLAFSTDGQLLASGGFH---G--LVQNRDTSSRNLQCTVEGPR---------GG-I----E--------------- 60 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d---~--~v~vwd~~~~~~~~~~~~~~---------~~-~----~--------------- 60 (216)
..+..++|+|||++|+.++.+ + .|.+||+.+++.......+. +. + .
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 457789999999999987754 2 37888888776544332211 11 0 1
Q ss_pred ------------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC-------eEEEEeCCCCceeEEee
Q 043942 61 ------------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA-------TLSIWNPKGGENFHAIR 121 (216)
Q Consensus 61 ------------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~-------~i~~wd~~~~~~~~~~~ 121 (216)
...|++||+.+++.+..+.. . .+..++|+|+| +++++..+. ...+|.+.+++. ..+.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~ 214 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMF 214 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEec
Confidence 25789999988876455554 3 78899999999 777775442 334443334443 3332
Q ss_pred cccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccC--------eE------------EeeeCCEEE-EEEecCCC
Q 043942 122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG--------KV------------DGHIDAIQS-LSVSAIRE 180 (216)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------~i------------~~~~~~i~~-~~~~~~~~ 180 (216)
. + ..+..+ +|+|+.|+..+.++ .+ ..+...+.. +.|+ ++
T Consensus 215 ~---------------~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg- 274 (347)
T 2gop_A 215 E---------------K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK- 274 (347)
T ss_dssp E---------------E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-
T ss_pred c---------------C-cceeeE--CCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-
Confidence 2 2 333333 78888776655332 22 223456775 8899 88
Q ss_pred eEEEEeCCCcEEEEEccccc
Q 043942 181 SLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 181 ~l~s~~~d~~v~vw~~~~~~ 200 (216)
++++++.++.+++| +.+++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EEEEEEETTEEEEE-EESSS
T ss_pred EEEEEecCCcEEEE-EcCCc
Confidence 88888999999999 87544
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.43 E-value=1.4e-11 Score=100.23 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=105.9
Q ss_pred ccccceEEEEEccCCCEEE-----EEcCCCcEEEEECCCCceE-EE-EeCCC-Ccc-------------cCc--------
Q 043942 12 GHKDSFSSLAFSTDGQLLA-----SGGFHGLVQNRDTSSRNLQ-CT-VEGPR-GGI-------------EDS-------- 62 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~-----s~~~d~~v~vwd~~~~~~~-~~-~~~~~-~~~-------------~~~-------- 62 (216)
+|...+..++|||||++|| .|+.+..|++||+.+++.. .. +.... ..+ .+.
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 3555789999999999998 4444578999999998765 21 11111 111 222
Q ss_pred -----EEEEEECCCcc----eeeeeeccCCCeeEEEEcCCCcEEEEecCCC----eEEEEeCCCCceeEEeecccccccc
Q 043942 63 -----TVWMWNADRGA----YLNMFSGHGSGLTCGDFTTDGKTICTGSDNA----TLSIWNPKGGENFHAIRRSSLEFSL 129 (216)
Q Consensus 63 -----~v~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~ 129 (216)
.|++|++.++. .+.....+...+..+.|+|||++|+.++.++ .|++||..++.......
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-------- 269 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-------- 269 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--------
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec--------
Confidence 39999998775 3333334556788999999999998877665 68888766554333322
Q ss_pred cceEEEeeeecCeEEEEeCCCCcEEEEecc---cCeE----------------Eee--eCCEEEEEEecCCCeEEEEeCC
Q 043942 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCV---DGKV----------------DGH--IDAIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~~~i----------------~~~--~~~i~~~~~~~~~~~l~s~~~d 188 (216)
+...+....+ ++|.+++.... ++.+ ..+ ...+..++|+ ++.++++...|
T Consensus 270 --------~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~d 339 (695)
T 2bkl_A 270 --------GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKD 339 (695)
T ss_dssp --------CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEET
T ss_pred --------CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 2223333334 33443332221 2222 222 3347778887 67788888889
Q ss_pred CcEEEEEcc
Q 043942 189 GTARVFEIA 197 (216)
Q Consensus 189 ~~v~vw~~~ 197 (216)
+..++|.+.
T Consensus 340 g~~~l~~~~ 348 (695)
T 2bkl_A 340 ATSEVRVAT 348 (695)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 998888765
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.42 E-value=1.2e-11 Score=91.62 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=113.8
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-----------Ccc-----cCcEEEEEECCCcceeeee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-----------GGI-----EDSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-----------~~~-----~~~~v~i~d~~~~~~~~~~ 78 (216)
..|.++.|++++..++..+.++.++.|. ++....+..+. ..+ .++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 3467778888777666666677777772 22222222211 111 5678999999887765544
Q ss_pred eccCCCeeEEEEcCCCcEEEEecCC----CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 79 SGHGSGLTCGDFTTDGKTICTGSDN----ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 79 ~~~~~~v~~~~~~~~~~~l~t~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
..+...+.+++++|+++++++...+ +.|.+||..++.....+.... ....+..++++|+|+++
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~i~~d~~g~l~ 149 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-------------TAYCIDDMVFDSKGGFY 149 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-------------SCCCEEEEEECTTSCEE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc-------------cCCcccceEECCCCCEE
Confidence 4566789999999999988887766 689999998776543332100 33568899999999877
Q ss_pred EEecc------cCeE-------------EeeeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccc
Q 043942 155 VTGCV------DGKV-------------DGHIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAE 198 (216)
Q Consensus 155 ~~~~~------~~~i-------------~~~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~ 198 (216)
++... .+.+ ......+..++|+|++++|+ +.+.++.|++|++.+
T Consensus 150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 150 FTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 76553 2333 12234578899999998664 455678999999864
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.40 E-value=9.6e-11 Score=84.11 Aligned_cols=170 Identities=14% Similarity=0.012 Sum_probs=112.1
Q ss_pred ceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCC-CC--cc------------cCcEEEEEECCCcceeeeee
Q 043942 16 SFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGP-RG--GI------------EDSTVWMWNADRGAYLNMFS 79 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~-~~--~~------------~~~~v~i~d~~~~~~~~~~~ 79 (216)
...+++++++|++++ +...++.|.+||..+.......... .. .+ .++.|.+||...........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~ 104 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 104 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence 678999999999777 5477889999997655432211111 00 01 35678888876544322211
Q ss_pred ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 80 GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 80 ~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
.....+..++++++++.+++...++.|.+|+..+......... ....+..++++++|+++++...
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------------~~~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------------GLNDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------------SCCSCCCEEECTTCCEEEEEGG
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------------cCCCceeEEEeCCCCEEEEECC
Confidence 2235688999999999888877888999998665443221111 2345678899999987777666
Q ss_pred cCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 160 DGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 160 ~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
++.+ ..+...+..++++++|.++++...++.|.+|+.....
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 6666 1122568899999999877777778999999986543
No 189
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.39 E-value=3.5e-10 Score=89.66 Aligned_cols=173 Identities=11% Similarity=0.002 Sum_probs=113.1
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeecc
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGH 81 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 81 (216)
++++.+.++... ..+..+.++|||+++++++.|+.|.+||+.. .+++.+..+..
T Consensus 185 ~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~------------------------~t~~~v~~i~~- 238 (567)
T 1qks_A 185 STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM------------------------KEPTTVAEIKI- 238 (567)
T ss_dssp TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS------------------------SSCCEEEEEEC-
T ss_pred CCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC------------------------CCCcEeEEEec-
Confidence 467777777643 3567899999999999988777777666630 13333344442
Q ss_pred CCCeeEEEEc----CCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeee-ecCeEEEEeCCCCcE-E
Q 043942 82 GSGLTCGDFT----TDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL-YDGVTCLSWPGTSKY-L 154 (216)
Q Consensus 82 ~~~v~~~~~~----~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l 154 (216)
......++|+ |||+++++++ .++.+.++|..+.+.+..+........... .| ...+..+..++++.. +
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~-----~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE-----YHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC-----EESCCCEEEEEECSSSSEEE
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc-----ccCCCceEEEEEcCCCCEEE
Confidence 2335789999 6999888776 569999999999998887764221100000 01 124566667776543 3
Q ss_pred EEecccCeE---------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccccceeec
Q 043942 155 VTGCVDGKV---------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 155 ~~~~~~~~i---------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~~~~~~ 205 (216)
+.....|.+ ........++.|+|+|++++++. .+++|.++|+.+++....+
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 333444554 11233556789999999887655 5789999999988765433
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.38 E-value=1.9e-10 Score=85.28 Aligned_cols=166 Identities=8% Similarity=-0.062 Sum_probs=117.5
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcceeeeeec
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~ 80 (216)
....+.+. +++++++...++.|.+||..+++.+.++.....+. .++.|.+||+.+++....+..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 45677774 35566677778999999999999988875432221 478899999999887766653
Q ss_pred cC-----CCeeEEEEcCCCcEEEEec-CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 81 HG-----SGLTCGDFTTDGKTICTGS-DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 81 ~~-----~~v~~~~~~~~~~~l~t~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
.. .....+++ .+++.+++.. .++.|.++|+.+++....+.. ......+.++|+|+++
T Consensus 124 g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----------------g~~p~~i~~~~dG~l~ 186 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----------------GIQPTSLVMDKYNKMW 186 (328)
T ss_dssp TTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----------------SSCBCCCEECTTSEEE
T ss_pred CCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----------------CCCccceEEcCCCCEE
Confidence 32 14567777 3444444443 488999999999988777753 2334677888988877
Q ss_pred EEeccc----------CeE----------E-e--e--eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 155 VTGCVD----------GKV----------D-G--H--IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 155 ~~~~~~----------~~i----------~-~--~--~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
+++..+ +.+ . . . ......++++|++++|..+.. .|.+||..+++.
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred EEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 766554 445 1 1 1 125789999999998887754 899999987664
No 191
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=3.8e-11 Score=90.41 Aligned_cols=129 Identities=11% Similarity=0.018 Sum_probs=94.2
Q ss_pred ccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeee
Q 043942 12 GHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 12 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~ 77 (216)
.+.. |+.++| |+++|+++ .++.|++||+.+.........+...+ .+|.+.+||+.++....
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-
Confidence 4666 999999 89999999 88999999988765443332222211 89999999999776643
Q ss_pred eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 78 FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 78 ~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
+...|+|++|+|+| ++.|..||.+++|+...+.. ..++......... .++...|.++.|.+++.+++
T Consensus 161 ---~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~------~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 161 ---LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEEL------PVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp ---EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTS------CTTTSEEEEEEESSSSEEEE
T ss_pred ---ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccc------cCCCeeEEEEEEecCCeEEE
Confidence 44579999999999 67788999999999887765 5556332110000 00457789999999888887
Q ss_pred E
Q 043942 156 T 156 (216)
Q Consensus 156 ~ 156 (216)
+
T Consensus 230 ~ 230 (388)
T 1xip_A 230 V 230 (388)
T ss_dssp E
T ss_pred E
Confidence 6
No 192
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=2.2e-09 Score=81.99 Aligned_cols=176 Identities=15% Similarity=0.073 Sum_probs=114.4
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc-c-------------cCc--EEEEEECCCcceeeee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG-I-------------EDS--TVWMWNADRGAYLNMF 78 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~-------------~~~--~v~i~d~~~~~~~~~~ 78 (216)
.....++|+++++++++...++.|++||..+++..........+ + .++ .|.+++...+.....+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 46789999999998888888899999999987766554432211 1 212 7788887655443333
Q ss_pred ----eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeec-CeEEEEeCCC-Cc
Q 043942 79 ----SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD-GVTCLSWPGT-SK 152 (216)
Q Consensus 79 ----~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~ 152 (216)
......+.+++++|++..|..+..++.|+.||..++... .+....... .... +...++|+|+ +.
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g---------~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSG---------SLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCS---------CCCCSSCCEEEEETTTTE
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccC---------CCCCCccccEEEeCCCCE
Confidence 214456789999995555555777889999999876532 221100000 0011 1127888884 55
Q ss_pred EEEEecccCeE------------Eee---------------eCCEEEEEEecCCCeEEEEe-CCCcEEEEEccccc
Q 043942 153 YLVTGCVDGKV------------DGH---------------IDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFR 200 (216)
Q Consensus 153 ~l~~~~~~~~i------------~~~---------------~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~ 200 (216)
++++-..++.| .++ -.....++++|+|+++++-+ .++.|+.|++.+++
T Consensus 281 lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 281 FYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 55555555555 111 13478999999999888877 78999999976654
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.32 E-value=3.6e-09 Score=76.76 Aligned_cols=172 Identities=5% Similarity=-0.030 Sum_probs=117.3
Q ss_pred eeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--CCcc----------------cCcEEEEEECCC
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGGI----------------EDSTVWMWNADR 71 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~----------------~~~~v~i~d~~~ 71 (216)
+..+...+.+++++++|+++++...++.|.+||.. ++.. .+..+ .... .++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 44556789999999999988887778899999988 5433 22211 1111 35678888876
Q ss_pred cce-eeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 72 GAY-LNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 72 ~~~-~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
++. ...+......+..+++.++++++++...++.|..||. +++....... . ....+..++++++
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~-~-------------~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELP-N-------------KGSYPSFITLGSD 151 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECS-S-------------TTCCEEEEEECTT
T ss_pred CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCC-C-------------CCCCCceEEEcCC
Confidence 322 1112224457889999999998888878889999998 5544322111 0 2345788899999
Q ss_pred CcEEEEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 151 SKYLVTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 151 ~~~l~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+..+++...++.+ . .....+..++++++|++.++...++.|.+|+. +++
T Consensus 152 g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp SCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 8877766555554 1 11245788999999997777767889999998 544
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.31 E-value=2.6e-10 Score=93.03 Aligned_cols=182 Identities=11% Similarity=0.090 Sum_probs=117.8
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCc----------------EEEEECCCCceE--EEEeCC--CCcc--
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGL----------------VQNRDTSSRNLQ--CTVEGP--RGGI-- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~----------------v~vwd~~~~~~~--~~~~~~--~~~~-- 59 (216)
++|+.+.....+ ..+..++|+|||+.|+.++.++. |++|++.+++.. ..+... ....
T Consensus 159 ~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 159 DGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 455554432222 23678999999999999888766 999999887522 222221 1100
Q ss_pred --------------c-----CcEEEEEECCC------cc-eeeeeeccCCCeeEEEEcCCCcEEEEecCC----CeEEEE
Q 043942 60 --------------E-----DSTVWMWNADR------GA-YLNMFSGHGSGLTCGDFTTDGKTICTGSDN----ATLSIW 109 (216)
Q Consensus 60 --------------~-----~~~v~i~d~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d----~~i~~w 109 (216)
. +..|++||+.+ +. ....+..+...+.. .|+|+|+.|+..+.+ ..|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 1 67899999986 43 35556666665554 488888877765543 369999
Q ss_pred eCCCCce--eEEeecccccccccceEEEeeee--cCeEEEEeCCCCcEEEEecccCeE----------------EeeeCC
Q 043942 110 NPKGGEN--FHAIRRSSLEFSLNYWMICTSLY--DGVTCLSWPGTSKYLVTGCVDGKV----------------DGHIDA 169 (216)
Q Consensus 110 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~~i----------------~~~~~~ 169 (216)
|+.++.. ...+.. +. ..+..+.|++++.++++...++.. ..+...
T Consensus 317 d~~~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~ 381 (710)
T 2xdw_A 317 DFTDPEESKWKVLVP---------------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS 381 (710)
T ss_dssp ETTSCCGGGCEEEEC---------------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE
T ss_pred eCCCCCcccceeccC---------------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce
Confidence 9987642 233322 22 256778888777777777766643 122345
Q ss_pred EEEEEEecCCCeEEEE-e---CCCcEEEEEccccc
Q 043942 170 IQSLSVSAIRESLVSV-S---VDGTARVFEIAEFR 200 (216)
Q Consensus 170 i~~~~~~~~~~~l~s~-~---~d~~v~vw~~~~~~ 200 (216)
+..+.++|++..++.. + ..+.++.||+.+++
T Consensus 382 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 382 VVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7788899998765522 2 35789999998766
No 195
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.29 E-value=7e-09 Score=78.23 Aligned_cols=181 Identities=10% Similarity=-0.080 Sum_probs=115.2
Q ss_pred eEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEE-EeCCCCc-------------ccCcEEEEEECCCcceeeeee-
Q 043942 17 FSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCT-VEGPRGG-------------IEDSTVWMWNADRGAYLNMFS- 79 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~-~~~~~~~-------------~~~~~v~i~d~~~~~~~~~~~- 79 (216)
...+.|+|||++|+.+.. +..|.++| .+++.... +..+... ..++.+.++|. +++......
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~ 204 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV 204 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence 457899999999998874 47899999 99998888 6543210 06788889998 776653321
Q ss_pred ----ccCCC-eeEEEEcCCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 80 ----GHGSG-LTCGDFTTDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 80 ----~~~~~-v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
....+ .....+.+++..++..+..+.+.+.|+..+.. ...+....... ............+.++|+++
T Consensus 205 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~-----~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 205 GAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR-----KADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred cccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc-----cccceecCceEeEEECCCCC
Confidence 11111 12345666665555445788999999975532 22221100000 00000123344577899988
Q ss_pred EEEEeccc----------CeE-------------EeeeCCEEEEEEecCCC-eEEEEe-CCCcEEEEEcccccceee
Q 043942 153 YLVTGCVD----------GKV-------------DGHIDAIQSLSVSAIRE-SLVSVS-VDGTARVFEIAEFRRATK 204 (216)
Q Consensus 153 ~l~~~~~~----------~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~-~d~~v~vw~~~~~~~~~~ 204 (216)
.++++..+ +.+ ........+++|+|||+ +++++. .++.|.++|+.+++....
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 87775432 234 12234578999999999 777777 489999999999888766
No 196
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.29 E-value=9.3e-10 Score=81.82 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=100.7
Q ss_pred CCceeEEeeccccceEEEEEccCCCEEEEEcCC---------------------------CcEEEEECCCCceEEEEeCC
Q 043942 3 QGDWASEILGHKDSFSSLAFSTDGQLLASGGFH---------------------------GLVQNRDTSSRNLQCTVEGP 55 (216)
Q Consensus 3 ~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d---------------------------~~v~vwd~~~~~~~~~~~~~ 55 (216)
+|+... +..+.. +..++|+|||+.|+.++.+ ..|.+||+.+++....+...
T Consensus 94 ~g~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 171 (347)
T 2gop_A 94 TLSSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP 171 (347)
T ss_dssp TTEEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE
T ss_pred CCceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC
Confidence 344433 333334 8999999999998887642 56899999988763333321
Q ss_pred -CCc-------c-----c---------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC--------Ce
Q 043942 56 -RGG-------I-----E---------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN--------AT 105 (216)
Q Consensus 56 -~~~-------~-----~---------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d--------~~ 105 (216)
... + . ...|.++| +++. ..+..+ ..+..+ +|+|+.|+.++.+ ..
T Consensus 172 ~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~ 245 (347)
T 2gop_A 172 RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNK 245 (347)
T ss_dssp TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCE
T ss_pred CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccce
Confidence 000 1 0 12344444 3333 333334 444444 9999988877644 46
Q ss_pred EEEEeCCCCceeEEeecccccccccceEEEeeeecCeEE-EEeCCCCcEEEEecccCeE------------EeeeCCEEE
Q 043942 106 LSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTC-LSWPGTSKYLVTGCVDGKV------------DGHIDAIQS 172 (216)
Q Consensus 106 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~~~i------------~~~~~~i~~ 172 (216)
|.+|| +++....... +...+.. +.|+ ++ ++++++.++.. ..+...|.+
T Consensus 246 l~~~d--~~~~~~l~~~---------------~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~v~~ 306 (347)
T 2gop_A 246 LYIYD--GKEVMGILDE---------------VDRGVGQAKIKD-GK-VYFTLFEEGSVNLYIWDGEIKPIAKGRHWIMG 306 (347)
T ss_dssp EEEEC--SSCEEESSTT---------------CCSEEEEEEEET-TE-EEEEEEETTEEEEEEESSSEEEEECSSSEEEE
T ss_pred EEEEC--CCceEecccc---------------CCcccCCccEEc-Cc-EEEEEecCCcEEEEEcCCceEEEecCCCeEEe
Confidence 88888 4543332222 3455665 7888 77 77776666543 223456888
Q ss_pred EEEecCCCeEEEEeCCCcE-EEEEcc
Q 043942 173 LSVSAIRESLVSVSVDGTA-RVFEIA 197 (216)
Q Consensus 173 ~~~~~~~~~l~s~~~d~~v-~vw~~~ 197 (216)
++|+| .++++++.++.. .+|.+.
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999 667777766654 777775
No 197
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.29 E-value=9.6e-09 Score=73.37 Aligned_cols=183 Identities=10% Similarity=0.062 Sum_probs=123.2
Q ss_pred CceeEEeecccc--ceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCcc----------------cCcE
Q 043942 4 GDWASEILGHKD--SFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGGI----------------EDST 63 (216)
Q Consensus 4 g~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~ 63 (216)
.+.+.++. |.. ....++|++++.++++.+. ++.|++.|+.+++.+..+....... .++.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence 45666664 543 3579999998766665553 5799999999999999886433211 7899
Q ss_pred EEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeE
Q 043942 64 VWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVT 143 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 143 (216)
+.++|..+.+.+.++..... ....+++|++.++++..++.|.++|..+.+....+...... .....++
T Consensus 88 v~viD~~t~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~----------~p~~~~n 155 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG----------HRVIRLN 155 (266)
T ss_dssp EEEEETTTTEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT----------EECCCEE
T ss_pred EEEEECCCCcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC----------cccccce
Confidence 99999999988888763212 12335567887777778899999999998888777642100 0111355
Q ss_pred EEEeCCCCcEEEEecccCeE--------------Eee-------------eCCEEEEEEecCCCe-EEEEeCCCcEEEEE
Q 043942 144 CLSWPGTSKYLVTGCVDGKV--------------DGH-------------IDAIQSLSVSAIRES-LVSVSVDGTARVFE 195 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~~~i--------------~~~-------------~~~i~~~~~~~~~~~-l~s~~~d~~v~vw~ 195 (216)
.+.|. ++..++....++.| ... ..-...++|+|+++. ++++...+++.+-+
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 66666 55444444344444 100 024589999999864 55666788999988
Q ss_pred ccccc
Q 043942 196 IAEFR 200 (216)
Q Consensus 196 ~~~~~ 200 (216)
+....
T Consensus 235 l~~~~ 239 (266)
T 2iwa_A 235 LHLVR 239 (266)
T ss_dssp EEECC
T ss_pred Eeccc
Confidence 87653
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.27 E-value=4.7e-09 Score=76.85 Aligned_cols=171 Identities=9% Similarity=0.049 Sum_probs=106.2
Q ss_pred cccceEEEEEccC-CCEEEEEcCCCcEEEEECCCCceEEE-EeCCC----C---cc-------------cC---------
Q 043942 13 HKDSFSSLAFSTD-GQLLASGGFHGLVQNRDTSSRNLQCT-VEGPR----G---GI-------------ED--------- 61 (216)
Q Consensus 13 h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~----~---~~-------------~~--------- 61 (216)
+...+.+++++++ |+++++.. ...|.+||.. ++.... ..... . .+ .+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4567899999999 76555554 4478899988 654332 11110 0 00 11
Q ss_pred ------cEEEEEECCCcceeeeeeccCCCeeEEEEc----CCCcEEE-EecCCCeEEEEeCC-CCceeE--Eeecccccc
Q 043942 62 ------STVWMWNADRGAYLNMFSGHGSGLTCGDFT----TDGKTIC-TGSDNATLSIWNPK-GGENFH--AIRRSSLEF 127 (216)
Q Consensus 62 ------~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-t~~~d~~i~~wd~~-~~~~~~--~~~~~~~~~ 127 (216)
+.|..||.. ++... +..+......++|+ |+++.+. +...++.|.+||+. +++... .+..
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~----- 219 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH----- 219 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE-----
T ss_pred cccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEE-----
Confidence 456666654 43322 22233456889999 9997654 44578899999986 443211 1110
Q ss_pred cccceEEEeeee-cCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEecCCCeE-EEEeCCCcE
Q 043942 128 SLNYWMICTSLY-DGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVSAIRESL-VSVSVDGTA 191 (216)
Q Consensus 128 ~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~~~~~~l-~s~~~d~~v 191 (216)
...+. ..+..++++++|+++++...++.+ ..+...+.+++++|+++.| ++...++.|
T Consensus 220 -------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l 292 (314)
T 1pjx_A 220 -------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV 292 (314)
T ss_dssp -------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred -------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeE
Confidence 00022 456788999999887776555555 2233678999999999955 455567899
Q ss_pred EEEEcccc
Q 043942 192 RVFEIAEF 199 (216)
Q Consensus 192 ~vw~~~~~ 199 (216)
..|++...
T Consensus 293 ~~~~~~~~ 300 (314)
T 1pjx_A 293 WKFEWQRN 300 (314)
T ss_dssp EEEECSSC
T ss_pred EEEeCCCC
Confidence 99998753
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=2.5e-08 Score=72.77 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=112.9
Q ss_pred eeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCC----------cc---cCcEEEEEECCCccee
Q 043942 10 ILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----------GI---EDSTVWMWNADRGAYL 75 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----------~~---~~~~v~i~d~~~~~~~ 75 (216)
+..+..-..+..|+|++ .++++...++.|+.||..+++.. .+..... .. .+..|.+||..+++..
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAV 86 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEE
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEE
Confidence 34444556789999954 56666677899999999887542 2222111 11 4567889998877543
Q ss_pred eeeec----cCCCeeEEEEcCCCcEEEEecC-----------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeec
Q 043942 76 NMFSG----HGSGLTCGDFTTDGKTICTGSD-----------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 76 ~~~~~----~~~~v~~~~~~~~~~~l~t~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
..... ....+..++++|+|+++++... .+.|..+|.. ++... +.. ...
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~---------------~~~ 149 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFD---------------QVD 149 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEE---------------EES
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-Eee---------------ccc
Confidence 32221 1235788999999997775432 2344444433 33222 221 344
Q ss_pred CeEEEEeCCCCcEEEE-ecccCeEE---------------------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 141 GVTCLSWPGTSKYLVT-GCVDGKVD---------------------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~-~~~~~~i~---------------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
..+.++|+|+++.++. .+.++.|. .+...+..++++++|++.++....+.|.+||..+
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTT
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCC
Confidence 5678999999986654 44455551 0113467889999998888877788899999987
Q ss_pred ccceeec
Q 043942 199 FRRATKA 205 (216)
Q Consensus 199 ~~~~~~~ 205 (216)
++....+
T Consensus 230 G~~~~~i 236 (297)
T 3g4e_A 230 GKRLQTV 236 (297)
T ss_dssp CCEEEEE
T ss_pred ceEEEEE
Confidence 7765543
No 200
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.25 E-value=2.1e-08 Score=72.75 Aligned_cols=166 Identities=11% Similarity=0.067 Sum_probs=113.8
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC--C-----------Ccc-----cCcEEEEEECCCcce
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP--R-----------GGI-----EDSTVWMWNADRGAY 74 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~-----------~~~-----~~~~v~i~d~~~~~~ 74 (216)
+...+.+++++++|+++++...++.|..||.. ++. ..+..+ . ..+ .++.|..||. +++.
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~ 131 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI 131 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence 44678999999999988888778889999976 332 222221 1 111 3567778887 4443
Q ss_pred eee-eeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEE-eecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 75 LNM-FSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHA-IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 75 ~~~-~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
... .......+..+++.++++.+++...++.|..||. +++.... ... ....+..+++++++.
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~---------------~~~~~~~i~~~~~g~ 195 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPT---------------PASGPVGITKGNDDA 195 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS---------------TTCCEEEEEECTTSS
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCC---------------CCCcceeEEECCCCC
Confidence 322 2223456889999999988888777889999998 5654432 111 234577889999888
Q ss_pred EEEEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 153 YLVTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 153 ~l~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
+.++...++.+ . .+...+.+++++++|++.++...++.|..||..
T Consensus 196 l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 196 LWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred EEEEccCCceEEEECCCCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 76665555544 1 122568899999999977776678899999973
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=1.1e-08 Score=74.81 Aligned_cols=175 Identities=11% Similarity=0.133 Sum_probs=113.8
Q ss_pred eeccccceEEEEEccCCCEEEE-------EcCCCcEEEEECCCCceEEEEe---------------CCC-Ccc----cCc
Q 043942 10 ILGHKDSFSSLAFSTDGQLLAS-------GGFHGLVQNRDTSSRNLQCTVE---------------GPR-GGI----EDS 62 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s-------~~~d~~v~vwd~~~~~~~~~~~---------------~~~-~~~----~~~ 62 (216)
+...-....+++|+++|+++++ ...++.|.+||..+++...... .+. ..+ ...
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 3444456789999999988888 5678899999988776543211 011 111 234
Q ss_pred EEEEEECCCcceeee-eec----cCCCeeEEEEcCCCcEEEEecCC---------------CeEEEEeCCCCceeEEeec
Q 043942 63 TVWMWNADRGAYLNM-FSG----HGSGLTCGDFTTDGKTICTGSDN---------------ATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~t~~~d---------------~~i~~wd~~~~~~~~~~~~ 122 (216)
.|.+||.. ++.... ... ....+.+++++++++++++...+ +.|..||.. ++......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~- 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT- 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence 67778877 554322 211 12357899999999988877655 567778766 54333222
Q ss_pred ccccccccceEEEeeeecCeEEEEeC----CCCcEEEEe-cccCeE-----E---------------eee-CCEEEEEEe
Q 043942 123 SSLEFSLNYWMICTSLYDGVTCLSWP----GTSKYLVTG-CVDGKV-----D---------------GHI-DAIQSLSVS 176 (216)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~~~~i-----~---------------~~~-~~i~~~~~~ 176 (216)
.......++++ |+++.++.+ ..++.+ . .+. ..+..++++
T Consensus 170 ---------------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 170 ---------------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp ---------------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred ---------------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 33456778888 888655444 344444 0 001 347788999
Q ss_pred cCCCeEEEEeCCCcEEEEEcccccce
Q 043942 177 AIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 177 ~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
++|+++++...++.|.+||..+++..
T Consensus 235 ~~G~l~v~~~~~~~i~~~d~~~g~~~ 260 (314)
T 1pjx_A 235 EDNNLLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBSCS
T ss_pred CCCCEEEEEcCCCEEEEEcCCCCcEe
Confidence 99998888878899999998755543
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.22 E-value=1.9e-09 Score=88.40 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=100.9
Q ss_pred cccceEEEEEccCCCEEEEEcCC-----CcEEEEECCCCceEEEE-eC---------CCCcc----c-------------
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFH-----GLVQNRDTSSRNLQCTV-EG---------PRGGI----E------------- 60 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~-~~---------~~~~~----~------------- 60 (216)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .. +...+ .
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCC
Confidence 33468899999999999877644 46999999998765431 11 11111 1
Q ss_pred -CcEEEEEECCCcce--eeeee--ccCCCeeEEEEcCCCcEEEEecCCC-----eEEEEeCCCC--ceeEEeeccccccc
Q 043942 61 -DSTVWMWNADRGAY--LNMFS--GHGSGLTCGDFTTDGKTICTGSDNA-----TLSIWNPKGG--ENFHAIRRSSLEFS 128 (216)
Q Consensus 61 -~~~v~i~d~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~t~~~d~-----~i~~wd~~~~--~~~~~~~~~~~~~~ 128 (216)
...|++|++.++.. ...+. .+...+..+.|+|||++|+..+.++ .|++||+.++ +....+..
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~------ 314 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP------ 314 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC------
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC------
Confidence 33588999877652 22222 2334588999999999988776543 8999999876 31333332
Q ss_pred ccceEEEeeeecCeEEEEeCCCCcEEEEecccC----eE----------------EeeeCCEEEEEEecCCCeEEEEeCC
Q 043942 129 LNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDG----KV----------------DGHIDAIQSLSVSAIRESLVSVSVD 188 (216)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~----~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d 188 (216)
+........ +|+|..|+..+.++ .+ ..+...+..+.|+ ++.++++...|
T Consensus 315 ---------~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d 383 (741)
T 1yr2_A 315 ---------DLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD 383 (741)
T ss_dssp ---------SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred ---------CCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 122222222 24555444333211 12 1122335567776 55677788889
Q ss_pred CcEEEEEcc
Q 043942 189 GTARVFEIA 197 (216)
Q Consensus 189 ~~v~vw~~~ 197 (216)
+..++|.+.
T Consensus 384 g~~~l~~~~ 392 (741)
T 1yr2_A 384 AKSQVLAFD 392 (741)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 988887665
No 203
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.21 E-value=5.8e-09 Score=78.33 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=72.5
Q ss_pred CCCEEEEEc------CCCcEEEEECCCCceEEEEeCCCCcc-------------c-----------CcEEEEEECCCcce
Q 043942 25 DGQLLASGG------FHGLVQNRDTSSRNLQCTVEGPRGGI-------------E-----------DSTVWMWNADRGAY 74 (216)
Q Consensus 25 ~~~~l~s~~------~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~-----------~~~v~i~d~~~~~~ 74 (216)
++++++... .|+.|.+||..+++.+..+.....+. . ++.|.+||..+++.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~ 93 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF 93 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence 555555543 47799999999998877765432211 1 45799999999888
Q ss_pred eeeeecc------CCCeeEEEEcCCCcEEEEecC--CCeEEEEeCCCCceeEE-ee
Q 043942 75 LNMFSGH------GSGLTCGDFTTDGKTICTGSD--NATLSIWNPKGGENFHA-IR 121 (216)
Q Consensus 75 ~~~~~~~------~~~v~~~~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~-~~ 121 (216)
+..+... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +.
T Consensus 94 ~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 94 EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 8777532 245778999999999998863 68999999999988776 44
No 204
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.19 E-value=1.3e-08 Score=77.76 Aligned_cols=198 Identities=13% Similarity=0.029 Sum_probs=114.3
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCC--------CCc--c--
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGP--------RGG--I-- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~--------~~~--~-- 59 (216)
.+++.+.++..-..+ .++++|||++++.+. .++.|.++|..+++.+.++... ..+ +
T Consensus 107 ~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~ 184 (426)
T 3c75_H 107 STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL 184 (426)
T ss_dssp TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence 467777777755555 899999999888776 3678999999999999888643 111 1
Q ss_pred ------------c-CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEE----ee
Q 043942 60 ------------E-DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHA----IR 121 (216)
Q Consensus 60 ------------~-~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~----~~ 121 (216)
. ++.|.++|+.+++.+.++.-... ....|++ +.+++.+.||.+.+.+..+++.... +.
T Consensus 185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~ 260 (426)
T 3c75_H 185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFH 260 (426)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCS
T ss_pred cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeec
Confidence 2 57899999998887777653111 1111211 2223333334433333322221110 00
Q ss_pred cc------cc--cccccc---------eEEEee-----------------------eecCeEEEEeCCCCcEEEEecc--
Q 043942 122 RS------SL--EFSLNY---------WMICTS-----------------------LYDGVTCLSWPGTSKYLVTGCV-- 159 (216)
Q Consensus 122 ~~------~~--~~~~~~---------~~~~~~-----------------------~~~~v~~~~~~~~~~~l~~~~~-- 159 (216)
.. .. ...... ...... .......++++|+++.+++...
T Consensus 261 v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~ 340 (426)
T 3c75_H 261 TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQR 340 (426)
T ss_dssp CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEEC
T ss_pred cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccc
Confidence 00 00 000000 000000 1111223678888887666542
Q ss_pred --------cCeE-------------EeeeCCEEEEEEecCCC-eEEEEe-CCCcEEEEEcccccceeec
Q 043942 160 --------DGKV-------------DGHIDAIQSLSVSAIRE-SLVSVS-VDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 160 --------~~~i-------------~~~~~~i~~~~~~~~~~-~l~s~~-~d~~v~vw~~~~~~~~~~~ 205 (216)
.+.+ ..-......+.|+|||+ ++++.. .++.|.++|+.+.+....+
T Consensus 341 ~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 341 DEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 1233 12223578899999999 888777 5899999999999887765
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.17 E-value=1.2e-07 Score=68.63 Aligned_cols=166 Identities=10% Similarity=0.047 Sum_probs=114.3
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Cc-----------c-----cCcEEEEEECCCcce
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GG-----------I-----EDSTVWMWNADRGAY 74 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~-----------~-----~~~~v~i~d~~~~~~ 74 (216)
....+.+++++++|++.++...++.|.+||.. ++... +..+. .. + .++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 44678999999999988888788999999988 54433 22211 11 1 35678888877 443
Q ss_pred e-eeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 75 L-NMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 75 ~-~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
. .........+.++++.++++++++...++.|..+|.. ++... +.... ....+..+++++++++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~-------------~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-YDLPN-------------KGSYPAFITLGSDNAL 159 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-EECSS-------------TTCCEEEEEECTTSSE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-ccCCC-------------CCCCceeEEECCCCCE
Confidence 2 1222234568899999999988888778899999987 55432 22100 2346788899999886
Q ss_pred EEEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 154 LVTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 154 l~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
.++...++.+ . .....+..++++++|++.++....+.|.+|+.
T Consensus 160 ~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 160 WFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp EEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 6665545554 1 11245789999999987777666778999987
No 206
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.15 E-value=3.5e-08 Score=69.84 Aligned_cols=113 Identities=14% Similarity=0.230 Sum_probs=85.1
Q ss_pred ceeEEeeccccc--eEEEEEccCCCEEEEEcCCC--cEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 5 DWASEILGHKDS--FSSLAFSTDGQLLASGGFHG--LVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 5 ~~~~~~~~h~~~--v~~~~~s~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
+.++++ .|... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+..+.... .++.+
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 345556 35543 4789998 677777777766 89999999999999887655321 68999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.+||..+.+.+.++.-.. ....++++++.|+.+..++.|.++|..+.+....+..
T Consensus 110 ~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V 164 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV 164 (262)
T ss_dssp EEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred EEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence 999999999998887432 2233345677777777788999999999988877765
No 207
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.13 E-value=1.2e-08 Score=76.73 Aligned_cols=186 Identities=12% Similarity=0.059 Sum_probs=116.2
Q ss_pred ceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCc-------------ccCcEEEEEECCC-cceeeeee
Q 043942 16 SFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGG-------------IEDSTVWMWNADR-GAYLNMFS 79 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~-------------~~~~~v~i~d~~~-~~~~~~~~ 79 (216)
....++++|||++++.+.. ++.|.++|+.+++.+.++..+... ..||.+.+.++.+ ++......
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~ 217 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 217 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec
Confidence 3456899999999888764 689999999999999988653210 1788899999876 55432211
Q ss_pred cc----CCCee-EEEEc-CCCcEEEEecCCCeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942 80 GH----GSGLT-CGDFT-TDGKTICTGSDNATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 80 ~~----~~~v~-~~~~~-~~~~~l~t~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (216)
.+ ...+. ...|. ++|++++ .+.++.+++.|+.++.. ...+..-........+ .......+++++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~-----~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 218 EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW-----RPGGWQQVAYHRAL 291 (386)
T ss_dssp CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE-----EECSSSCEEEETTT
T ss_pred ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccc-----cCCCcceeeECCCC
Confidence 11 11221 24554 6776555 45589999999976542 2222100000000000 22334456668888
Q ss_pred cEEEEeccc----------CeE-------------EeeeCCEEEEEEecCCC-eEEEE-eCCCcEEEEEcccccceeecC
Q 043942 152 KYLVTGCVD----------GKV-------------DGHIDAIQSLSVSAIRE-SLVSV-SVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 152 ~~l~~~~~~----------~~i-------------~~~~~~i~~~~~~~~~~-~l~s~-~~d~~v~vw~~~~~~~~~~~~ 206 (216)
+.++....+ ..+ ..-...+.++++++|++ +|+++ ..++.|.++|..+++....++
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 877765421 223 22234678999999997 66654 558999999999998877654
Q ss_pred C
Q 043942 207 S 207 (216)
Q Consensus 207 ~ 207 (216)
.
T Consensus 372 ~ 372 (386)
T 3sjl_D 372 Q 372 (386)
T ss_dssp C
T ss_pred C
Confidence 4
No 208
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.13 E-value=4.1e-08 Score=71.86 Aligned_cols=153 Identities=10% Similarity=0.041 Sum_probs=99.3
Q ss_pred eeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCC
Q 043942 6 WASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSG 84 (216)
Q Consensus 6 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 84 (216)
.+..+..+........|+|+|+ ++++...++.|..|+.. +. ...+..+...
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~---------------------------g~-~~~~~~~~~~ 87 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED---------------------------GT-VDVLLDATAF 87 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT---------------------------SC-EEEEEESCSC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC---------------------------CC-EEEEeCCCCc
Confidence 3455555666778999999998 55666655666666541 21 1233335566
Q ss_pred eeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE----ecc-
Q 043942 85 LTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT----GCV- 159 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~- 159 (216)
+..++++++|+++++...++.|..||.. ++.......... .....+..++++|+|++.++ +..
T Consensus 88 ~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-----------~~~~~~~~i~~d~dG~l~~td~~~g~~~ 155 (305)
T 3dr2_A 88 TNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG-----------KRLNSPNDLIVARDGAIWFTDPPFGLRK 155 (305)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT-----------EECSCCCCEEECTTSCEEEECCSGGGSC
T ss_pred cceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC-----------CccCCCCCEEECCCCCEEEeCcCCCccc
Confidence 8899999999977777677899999986 553222211000 02234667889999988775 321
Q ss_pred ------------cCeE-------------EeeeCCEEEEEEecCCCeEEEEeCC------CcEEEEEcccc
Q 043942 160 ------------DGKV-------------DGHIDAIQSLSVSAIRESLVSVSVD------GTARVFEIAEF 199 (216)
Q Consensus 160 ------------~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d------~~v~vw~~~~~ 199 (216)
.+.+ . .......++|+|+++.|+.+... +.|++|++...
T Consensus 156 ~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 156 PSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp GGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred cccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 1223 2 33456789999999977776554 78999998754
No 209
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.12 E-value=4.1e-11 Score=90.32 Aligned_cols=158 Identities=9% Similarity=0.037 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcceeeeeeccCC-Cee-E
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSGHGS-GLT-C 87 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~~~~-~v~-~ 87 (216)
++..+++++.|+.|+.||..+++.+.++.. .... .++.|+.||.++++.+..+..+.. .+. +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 577899999999999999999999887765 2111 688999999998887666543321 111 1
Q ss_pred EEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEee-
Q 043942 88 GDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGH- 166 (216)
Q Consensus 88 ~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~- 166 (216)
..+. ++..+++++.|+.++.||.++|+.+..+.. +. ...++|++..+++++.++.+...
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---------------~~----~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---------------AF----ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------------EEEEEEEEEEECCC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---------------CC----cccccccCCEEEEEecCCEEEEEE
Confidence 1111 345677888899999999999998776653 11 12345577788888877776100
Q ss_pred ---eC--------CEEEEEEecCC---CeEEEEeCCCcEEEEEccccccee
Q 043942 167 ---ID--------AIQSLSVSAIR---ESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 167 ---~~--------~i~~~~~~~~~---~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.. .....+++++. ..+++++.||.++.||..+++..-
T Consensus 147 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 147 TKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp SSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred CCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 00 11112223322 567778889999999998887653
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.12 E-value=1.4e-07 Score=72.08 Aligned_cols=174 Identities=10% Similarity=0.055 Sum_probs=106.8
Q ss_pred EEEccCCCEEEEEcCCC--cEEEEECCCCceEEEE----eCCCC---cc-------------cCcEEEEEECCCcceeee
Q 043942 20 LAFSTDGQLLASGGFHG--LVQNRDTSSRNLQCTV----EGPRG---GI-------------EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 20 ~~~s~~~~~l~s~~~d~--~v~vwd~~~~~~~~~~----~~~~~---~~-------------~~~~v~i~d~~~~~~~~~ 77 (216)
++|+++++.|++++.++ .|.+++...+.....+ ..... .+ .++.|+.||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999999888766 7888888766554444 10000 11 346788888876643222
Q ss_pred ----eeccCCCe-e-EEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeeccc-ccccccceEEEeeeecCeEEEEeCC
Q 043942 78 ----FSGHGSGL-T-CGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSS-LEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 78 ----~~~~~~~v-~-~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
..++...- . .++|+|+ +.++++-..++.|+.|+.... ...+.... ..-.... ......-.....++++|
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg-~~~~~~~~~P~gia~d~ 332 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDG-LREEALFAQPNGMTVDE 332 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCE-EGGGCBCSSEEEEEECT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCC-cccccEeCCCeEEEEeC
Confidence 12222222 3 9999995 666677778899999997743 22222110 0000000 00000123478899999
Q ss_pred CCcEEEEec-ccCeE-------------Eee---------------eCCEEEEEEecCCCeEEEEeCCCcEEEEEc
Q 043942 150 TSKYLVTGC-VDGKV-------------DGH---------------IDAIQSLSVSAIRESLVSVSVDGTARVFEI 196 (216)
Q Consensus 150 ~~~~l~~~~-~~~~i-------------~~~---------------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~ 196 (216)
+|+++++-. .++.| .++ -.....++++++|.++++-..++.|+.+++
T Consensus 333 dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 333 DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 999777766 55555 121 245889999999888888888888888765
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.12 E-value=1.9e-07 Score=67.62 Aligned_cols=166 Identities=10% Similarity=0.031 Sum_probs=112.9
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC--Ccc----------------cCcEEEEEECCCccee
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR--GGI----------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~----------------~~~~v~i~d~~~~~~~ 75 (216)
...+.+++++++|+++++...++.|..||.. ++.. .+..+. ... .++.|..+|.. ++..
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence 3578899999999988887778889999987 5442 232211 111 35677777776 4433
Q ss_pred e-eeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 76 N-MFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 76 ~-~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
. .+......+..+++.++++.+++...++.|..+|. +++... +.... ....+..+++++++++.
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~-------------~~~~~~~i~~d~~g~l~ 202 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPT-------------NAAAPVGITSGNDGALW 202 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSS-------------TTCCEEEEEECTTSSEE
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCC-------------CCCCcceEEECCCCCEE
Confidence 2 22223456889999999997777777889999998 455433 22100 23457888999988877
Q ss_pred EEecccCeE---------E-----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 155 VTGCVDGKV---------D-----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 155 ~~~~~~~~i---------~-----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
++....+.+ . .....+.+++++++|++.++...++.|..|+..
T Consensus 203 v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 203 FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEccCCCEEEEEcCCCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 666555544 1 123467899999999977776667899999873
No 212
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.11 E-value=1.2e-09 Score=88.86 Aligned_cols=166 Identities=5% Similarity=-0.083 Sum_probs=104.3
Q ss_pred EEEEEccCCCEEEEEcCCCc-------------EEEEECCCCce--EEEEeC--CCCcc----------------cC---
Q 043942 18 SSLAFSTDGQLLASGGFHGL-------------VQNRDTSSRNL--QCTVEG--PRGGI----------------ED--- 61 (216)
Q Consensus 18 ~~~~~s~~~~~l~s~~~d~~-------------v~vwd~~~~~~--~~~~~~--~~~~~----------------~~--- 61 (216)
..++|+|||+.|+.++.|.. |++|++.+++. ...+.. +.... .+
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 67899999999999988776 99999988762 222222 11111 22
Q ss_pred -cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec---CCCeEEEEeCCCCce---eEEeecccccccccceEE
Q 043942 62 -STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS---DNATLSIWNPKGGEN---FHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 62 -~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~---~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~ 134 (216)
..|+++|..++. ...+..+...+....+ +++++++.+. .++.|.+||+.++.. ...+..
T Consensus 251 ~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~------------ 316 (695)
T 2bkl_A 251 ENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPE------------ 316 (695)
T ss_dssp EEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECC------------
T ss_pred ceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecC------------
Confidence 267777665554 3444455556666666 5666444444 358899999987653 233321
Q ss_pred Eeee-ecCeEEEEeCCCCcEEEEecccCeE---------------Eee-eCCEEEEEEecCCCeEEE----EeCCCcEEE
Q 043942 135 CTSL-YDGVTCLSWPGTSKYLVTGCVDGKV---------------DGH-IDAIQSLSVSAIRESLVS----VSVDGTARV 193 (216)
Q Consensus 135 ~~~~-~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~~-~~~i~~~~~~~~~~~l~s----~~~d~~v~v 193 (216)
+ ...+..++|+ ++.++++...++.. ..+ ...+..+.++|+++.++. ....+.|++
T Consensus 317 ---~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~ 392 (695)
T 2bkl_A 317 ---DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK 392 (695)
T ss_dssp ---CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred ---CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 2 3346667777 56667777666654 111 344667778898876662 233578999
Q ss_pred EEcccccc
Q 043942 194 FEIAEFRR 201 (216)
Q Consensus 194 w~~~~~~~ 201 (216)
||+.+++.
T Consensus 393 ~d~~~g~~ 400 (695)
T 2bkl_A 393 TSVSTGKS 400 (695)
T ss_dssp EETTTCCE
T ss_pred EECCCCcE
Confidence 99987653
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.10 E-value=2.2e-08 Score=74.58 Aligned_cols=168 Identities=11% Similarity=0.001 Sum_probs=101.6
Q ss_pred cccceEEEEEccCCCEEEEEcC-----CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGF-----HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTC 87 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~ 87 (216)
|...+.+++++++++++++-.. +..|.+||+.+++.+..+..+. . ...+...+..
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~---------------~-----~~~~~~~~~~ 124 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPP---------------P-----ITLSNSFVND 124 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCT---------------T-----TSCTTCCCCE
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECCh---------------h-----hcccccccce
Confidence 4567888999988876555432 3556666665444333322110 0 0012345689
Q ss_pred EEEcCCC-cEEEEec---CCCeEEEEeCCCCceeEEeecc-cccc-----cccceEEE--ee------eecCeEEEEeCC
Q 043942 88 GDFTTDG-KTICTGS---DNATLSIWNPKGGENFHAIRRS-SLEF-----SLNYWMIC--TS------LYDGVTCLSWPG 149 (216)
Q Consensus 88 ~~~~~~~-~~l~t~~---~d~~i~~wd~~~~~~~~~~~~~-~~~~-----~~~~~~~~--~~------~~~~v~~~~~~~ 149 (216)
+++++++ ..+++-. .++.|.+||+.+++....+... .... ........ .. ....+..++|+|
T Consensus 125 v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~ 204 (343)
T 2qe8_A 125 LAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA 204 (343)
T ss_dssp EEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT
T ss_pred EEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc
Confidence 9999864 4445554 6789999999988766554321 1100 01110000 00 113468899999
Q ss_pred CCcEEEEecccC-eE------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 150 TSKYLVTGCVDG-KV------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 150 ~~~~l~~~~~~~-~i------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
+++.|+.+...+ .+ .++......++++++|+++++...++.|.+||.++++
T Consensus 205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~ 280 (343)
T 2qe8_A 205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA 280 (343)
T ss_dssp TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence 999888776554 22 1233355679999999999998889999999984443
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.08 E-value=1.4e-08 Score=82.60 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=99.4
Q ss_pred cccceEEEEEccCCCEEEEE-----cCCCcEEEEECCCCceEEE-EeCC-CCc--------c----cC------------
Q 043942 13 HKDSFSSLAFSTDGQLLASG-----GFHGLVQNRDTSSRNLQCT-VEGP-RGG--------I----ED------------ 61 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~-----~~d~~v~vwd~~~~~~~~~-~~~~-~~~--------~----~~------------ 61 (216)
|...+..++|||||++||-+ +....|++||+.+++.+.. +... ... + .+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CC
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCC
Confidence 44568899999999998843 2335799999999975542 2211 011 1 22
Q ss_pred -cEEEEEECCCcce----eeeeec-cCCCeeEEEEcCCCcEEEEec----CCCeEEEEeCCCCc-eeEEeeccccccccc
Q 043942 62 -STVWMWNADRGAY----LNMFSG-HGSGLTCGDFTTDGKTICTGS----DNATLSIWNPKGGE-NFHAIRRSSLEFSLN 130 (216)
Q Consensus 62 -~~v~i~d~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~t~~----~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~ 130 (216)
..|++|++.++.. +..... |......+.|+|||++|+... .+..++++|+.++. ....+..
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-------- 278 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-------- 278 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC--------
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC--------
Confidence 3488888876542 222333 445578899999999886433 23589999998763 2333332
Q ss_pred ceEEEeeeecCeEEEEeCCCCcEE-EEeccc---CeE----------------EeeeCCEEEEEEecCCCeEEEEeC-CC
Q 043942 131 YWMICTSLYDGVTCLSWPGTSKYL-VTGCVD---GKV----------------DGHIDAIQSLSVSAIRESLVSVSV-DG 189 (216)
Q Consensus 131 ~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~---~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~-d~ 189 (216)
+....... +++++..| +....+ +.+ ..|...+. .|++++++|+.... ++
T Consensus 279 -------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 279 -------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp -------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETT
T ss_pred -------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECC
Confidence 12222222 22322222 222211 111 34444444 89999998876665 44
Q ss_pred --cEEEEEcccc
Q 043942 190 --TARVFEIAEF 199 (216)
Q Consensus 190 --~v~vw~~~~~ 199 (216)
.|++|++...
T Consensus 349 ~~~l~~~d~~g~ 360 (693)
T 3iuj_A 349 TARVEQFDYEGK 360 (693)
T ss_dssp EEEEEEECTTSC
T ss_pred eeEEEEEECCCC
Confidence 6888888643
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=6.9e-08 Score=70.67 Aligned_cols=166 Identities=10% Similarity=0.041 Sum_probs=98.4
Q ss_pred EEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-------Ccc---c-----------------
Q 043942 8 SEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-------GGI---E----------------- 60 (216)
Q Consensus 8 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-------~~~---~----------------- 60 (216)
..+..+...+..++++++|+++++...++.|.+|+.. ++......... ..+ .
T Consensus 79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~ 157 (305)
T 3dr2_A 79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPS 157 (305)
T ss_dssp EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGG
T ss_pred EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccc
Confidence 4455566778999999999977776667889999976 44322111000 001 1
Q ss_pred ----------CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCC------CeEEEEeCCCCceeEEeeccc
Q 043942 61 ----------DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDN------ATLSIWNPKGGENFHAIRRSS 124 (216)
Q Consensus 61 ----------~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d------~~i~~wd~~~~~~~~~~~~~~ 124 (216)
.+.|+.+|..+++..... .......++|+|+++.|+.+... +.|.+||+..+. +.....
T Consensus 158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~-- 232 (305)
T 3dr2_A 158 QGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRH-- 232 (305)
T ss_dssp GSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEE--
T ss_pred cccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeE--
Confidence 245666666555443322 33456789999999987776654 789999987654 211110
Q ss_pred ccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-----------EeeeCCEEEEEEecCCCeEEEEeCCC
Q 043942 125 LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-----------DGHIDAIQSLSVSAIRESLVSVSVDG 189 (216)
Q Consensus 125 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~ 189 (216)
...........++++++|++.+ ++.++.. ......+.+++|+|+++.|..++.++
T Consensus 233 ---------~~~~~~~~pdgi~~d~~G~lwv-~~~~gv~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 233 ---------FASVPDGLPDGFCVDRGGWLWS-SSGTGVCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ---------EECCSSSCCCSEEECTTSCEEE-CCSSEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred ---------EEECCCCCCCeEEECCCCCEEE-ecCCcEEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 0000122344567788887443 3333322 11123578899999988887776654
No 216
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.03 E-value=2.3e-08 Score=81.98 Aligned_cols=166 Identities=14% Similarity=0.016 Sum_probs=103.2
Q ss_pred eEEEEEccCCCEEEEEcCCCc--------------EEEEECCCCce--EEEEeCCCCc--c----------------c--
Q 043942 17 FSSLAFSTDGQLLASGGFHGL--------------VQNRDTSSRNL--QCTVEGPRGG--I----------------E-- 60 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~--------------v~vwd~~~~~~--~~~~~~~~~~--~----------------~-- 60 (216)
+..++|+|| +.|+.++.++. |++|++.++.. ...+...... . .
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG 289 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence 357899999 99988877654 88999977652 2222221110 0 1
Q ss_pred ---CcEEEEEECCCc--ceeeeeeccCCCeeEEEEcCCCcEEEEecC----CCeEEEEeCCCC--ceeEEeecccccccc
Q 043942 61 ---DSTVWMWNADRG--AYLNMFSGHGSGLTCGDFTTDGKTICTGSD----NATLSIWNPKGG--ENFHAIRRSSLEFSL 129 (216)
Q Consensus 61 ---~~~v~i~d~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~----d~~i~~wd~~~~--~~~~~~~~~~~~~~~ 129 (216)
...|++||+.++ +....+..+...+.... +|+++.|+..+. ++.|.+||+.++ .....+..
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~------- 361 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE------- 361 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-------
T ss_pred CCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-------
Confidence 348999998876 31445555555555543 488888877765 455999999875 22333322
Q ss_pred cceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------Ee-eeCCEEEEEEecCCCeEEE----EeCCC
Q 043942 130 NYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV---------------DG-HIDAIQSLSVSAIRESLVS----VSVDG 189 (216)
Q Consensus 130 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i---------------~~-~~~~i~~~~~~~~~~~l~s----~~~d~ 189 (216)
+...+..+.++ ++.++++...++.. .. ....+..+.++|+++.|+. ....+
T Consensus 362 --------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 432 (741)
T 1yr2_A 362 --------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPA 432 (741)
T ss_dssp --------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEE
T ss_pred --------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCC
Confidence 23334556665 44556666555543 11 2345788899999876652 23458
Q ss_pred cEEEEEccccc
Q 043942 190 TARVFEIAEFR 200 (216)
Q Consensus 190 ~v~vw~~~~~~ 200 (216)
+|++||+.+++
T Consensus 433 ~i~~~d~~tg~ 443 (741)
T 1yr2_A 433 TVLALDPATAK 443 (741)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCc
Confidence 89999998765
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.02 E-value=5e-07 Score=65.83 Aligned_cols=159 Identities=10% Similarity=0.035 Sum_probs=93.8
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c------cCcEEE-----------------
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I------EDSTVW----------------- 65 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~------~~~~v~----------------- 65 (216)
....+.+++++++|+++++. +..|.+||..+++........... . .+|.+.
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 45678999999999965554 567999999887654333221110 0 223222
Q ss_pred --EEECCC-cceeeeeeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeC--CCCcee--EEeecccccccccceEEEee
Q 043942 66 --MWNADR-GAYLNMFSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNP--KGGENF--HAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 66 --i~d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ 137 (216)
+|.+.. ++. ..+.........++|+|+++.+ ++.+.++.|..||+ .++... ..+.. ...
T Consensus 130 ~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~------------~~~ 196 (297)
T 3g4e_A 130 GALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYK------------LEK 196 (297)
T ss_dssp EEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEE------------CCG
T ss_pred cEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEE------------CCC
Confidence 222221 222 1222233456789999999866 45566889999987 455432 11110 000
Q ss_pred eecCeEEEEeCCCCcEEEEecccCeE--------------EeeeCCEEEEEEe-cCCCeEEEEe
Q 043942 138 LYDGVTCLSWPGTSKYLVTGCVDGKV--------------DGHIDAIQSLSVS-AIRESLVSVS 186 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~~~~~i--------------~~~~~~i~~~~~~-~~~~~l~s~~ 186 (216)
.......++++++|++.++....+.| ..+...+++++|. |+++.|..++
T Consensus 197 ~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 197 EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 22456778889988766665545444 2233578999998 8887665443
No 218
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.01 E-value=4.6e-07 Score=63.57 Aligned_cols=113 Identities=14% Similarity=0.124 Sum_probs=85.2
Q ss_pred ceeEEeecccc--ceEEEEEccCCCEEEEEcCC--CcEEEEECCCCceEEEEeCCCCcc----------------cCcEE
Q 043942 5 DWASEILGHKD--SFSSLAFSTDGQLLASGGFH--GLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTV 64 (216)
Q Consensus 5 ~~~~~~~~h~~--~v~~~~~s~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v 64 (216)
+.++++ .|.. ....+.|++ +.++.+.+.+ ..|+++|+.+++.+..+..+.... .++.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 455666 4654 466899987 5666676665 489999999999999887655421 78999
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.+||..+.+.+.++.... .-..++ +++..|+.+..++.|.++|..+.+....+..
T Consensus 88 ~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp EEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 999999999998887433 223444 5677777667789999999999988877765
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.01 E-value=6.3e-08 Score=72.68 Aligned_cols=52 Identities=19% Similarity=0.024 Sum_probs=39.6
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCC
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGP 55 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~ 55 (216)
++++.+.++.....+ .+.++||+++++.+. .++.|.+||..+++.+.++..+
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~ 115 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP 115 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence 467788888765556 799999999888876 3567888888888877777543
No 220
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.98 E-value=2.8e-07 Score=65.30 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=84.3
Q ss_pred ceeEEeeccccc--eEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----c------------cCcEEEE
Q 043942 5 DWASEILGHKDS--FSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----I------------EDSTVWM 66 (216)
Q Consensus 5 ~~~~~~~~h~~~--v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~------------~~~~v~i 66 (216)
+.++++ .|... ...+.|+. +.++.+.+.+|.|+++|+.+++.+..+ .+... + .++.+.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEE
T ss_pred EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEE
Confidence 455566 35433 46888874 677888888899999999999988887 43321 1 7899999
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
||..+.+.+.++... ..-..++ ++++.|+.+..++.|.++|..+.+....+..
T Consensus 121 ~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 121 WSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp EETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred EECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 999999999888743 2223444 5677777777799999999999988887765
No 221
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.95 E-value=1.6e-07 Score=74.57 Aligned_cols=122 Identities=11% Similarity=0.181 Sum_probs=86.3
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCC--CCceeEEeecccccccccceEEEeee
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPK--GGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
++.|.++|..+++.+..+.. ...+..+.|+||++++++++.|+.|.+||+. +++.+..+..
T Consensus 176 ~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~---------------- 238 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI---------------- 238 (567)
T ss_dssp TTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----------------
T ss_pred CCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----------------
Confidence 44455555555555555542 3356789999999999999999999999996 7777776653
Q ss_pred ecCeEEEEeC----CCCcEEEEeccc-CeE--------------E--e--------e-eCCEEEEEEecCCCe-EEEEeC
Q 043942 139 YDGVTCLSWP----GTSKYLVTGCVD-GKV--------------D--G--------H-IDAIQSLSVSAIRES-LVSVSV 187 (216)
Q Consensus 139 ~~~v~~~~~~----~~~~~l~~~~~~-~~i--------------~--~--------~-~~~i~~~~~~~~~~~-l~s~~~ 187 (216)
......++|+ |+|+++++++.. +.+ . + | ...+..+..++++.. +++...
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~ 318 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 318 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence 3346789999 699998887664 444 0 1 1 125778888887654 455566
Q ss_pred CCcEEEEEcccc
Q 043942 188 DGTARVFEIAEF 199 (216)
Q Consensus 188 d~~v~vw~~~~~ 199 (216)
+|.|.++|+.+.
T Consensus 319 ~g~v~~vd~~~~ 330 (567)
T 1qks_A 319 TGKILLVDYTDL 330 (567)
T ss_dssp TTEEEEEETTCS
T ss_pred CCeEEEEecCCC
Confidence 799999998764
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.95 E-value=1.6e-06 Score=66.17 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=111.7
Q ss_pred cCCCEEE-EEcCCCcEEEEECCCC----ceEEEEe--------C---------CCCcc-----------cCcEEEEEECC
Q 043942 24 TDGQLLA-SGGFHGLVQNRDTSSR----NLQCTVE--------G---------PRGGI-----------EDSTVWMWNAD 70 (216)
Q Consensus 24 ~~~~~l~-s~~~d~~v~vwd~~~~----~~~~~~~--------~---------~~~~~-----------~~~~v~i~d~~ 70 (216)
+++++|+ ++..++.|.++|+.+. +..+.++ + ...++ ..+.+.++|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECC
Confidence 7777655 5667889999999754 5556662 0 01112 23789999999
Q ss_pred CcceeeeeeccC---CCeeEEEEcCCCcEEEEec-------------------CCCeEEEEeCCCCceeEEeeccccccc
Q 043942 71 RGAYLNMFSGHG---SGLTCGDFTTDGKTICTGS-------------------DNATLSIWNPKGGENFHAIRRSSLEFS 128 (216)
Q Consensus 71 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~t~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~ 128 (216)
+.+.+.++.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++....
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~---- 248 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE---- 248 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT----
T ss_pred CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC----
Confidence 999988886322 2234688899999888874 37899999999988777776421
Q ss_pred ccceEEEeeeecCeEEEEe--CCCCcEEEEecc-----c-CeEE------------------ee----------------
Q 043942 129 LNYWMICTSLYDGVTCLSW--PGTSKYLVTGCV-----D-GKVD------------------GH---------------- 166 (216)
Q Consensus 129 ~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~-----~-~~i~------------------~~---------------- 166 (216)
.......+.| +|++++.++++. . +.+. ..
T Consensus 249 ---------~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 249 ---------ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp ---------TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred ---------CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 1123344544 899988777665 2 2220 00
Q ss_pred eCCEEEEEEecCCCeEEEEeC-CCcEEEEEccc
Q 043942 167 IDAIQSLSVSAIRESLVSVSV-DGTARVFEIAE 198 (216)
Q Consensus 167 ~~~i~~~~~~~~~~~l~s~~~-d~~v~vw~~~~ 198 (216)
......+.+||||++|.++.. .+.|.+||+..
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 234688999999999887665 68999999863
No 223
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.95 E-value=2.3e-06 Score=64.53 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=77.2
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCC----------CCcc--
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGP----------RGGI-- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~----------~~~~-- 59 (216)
.+++.+.++.....+ .++++|||++++.+. .++.|.+||..+.+.+.++... ....
T Consensus 55 ~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence 456677777654444 899999999988886 3678999999998888877543 0011
Q ss_pred ------------c-CcEEEEEECCCcceeee-eeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEE
Q 043942 60 ------------E-DSTVWMWNADRGAYLNM-FSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHA 119 (216)
Q Consensus 60 ------------~-~~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~ 119 (216)
. ++.|.++| .+++.+.. +.. .. ++.+.|++ +.+++.+.|+.+.++|. +++....
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 2 47799999 88887766 542 22 24455554 45567778999999999 7776633
No 224
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.92 E-value=2.1e-06 Score=63.42 Aligned_cols=157 Identities=15% Similarity=0.018 Sum_probs=92.7
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCC----cc------cC----------------cEEEE
Q 043942 13 HKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG----GI------ED----------------STVWM 66 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----~~------~~----------------~~v~i 66 (216)
....+.+++|+++|+++++. .+ .|.+||..+++.......... .+ .+ +.|..
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 34678999999999877765 33 499999988765433221110 00 11 34444
Q ss_pred EECCCcceeeeeeccCCCeeEEEEcCCCcEEEE-ecCCCeEEEEeCC--CC-cee--EEeecccccccccceEEEeeeec
Q 043942 67 WNADRGAYLNMFSGHGSGLTCGDFTTDGKTICT-GSDNATLSIWNPK--GG-ENF--HAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t-~~~d~~i~~wd~~--~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
++ +++.. .+..+......++|+|+++.++. .+.++.|.+||+. ++ ... ..+.... ....
T Consensus 166 ~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~------------~~~~ 230 (326)
T 2ghs_A 166 VA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST------------GIKG 230 (326)
T ss_dssp EE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT------------TSSS
T ss_pred Ee--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC------------CCCC
Confidence 55 33322 22223345678999999987654 4567899999986 55 321 1111000 0123
Q ss_pred CeEEEEeCCCCcEEEEecccCeE-------------EeeeCCEEEEEEe-cCCCeEEEEe
Q 043942 141 GVTCLSWPGTSKYLVTGCVDGKV-------------DGHIDAIQSLSVS-AIRESLVSVS 186 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~-~~~~~l~s~~ 186 (216)
....++++++|.+.++...++.+ ..+...+++++|+ |+++.|+.++
T Consensus 231 ~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 231 GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 35678888888766655444444 2233468999998 8887665443
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.88 E-value=2.2e-07 Score=69.90 Aligned_cols=188 Identities=13% Similarity=0.051 Sum_probs=115.7
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEc----------CCCcEEEEECCCCceEEEEeCCC--------Cc--c--
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGG----------FHGLVQNRDTSSRNLQCTVEGPR--------GG--I-- 59 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~--------~~--~-- 59 (216)
.+++.+.++.....+ . ++++|||++++.++ .++.|.+||..+++.+.++..+. .+ +
T Consensus 67 ~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 67 EAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 467777777755555 4 99999999887765 36789999999999999886432 11 1
Q ss_pred -------------cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC-CceeEEeecccc
Q 043942 60 -------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG-GENFHAIRRSSL 125 (216)
Q Consensus 60 -------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~-~~~~~~~~~~~~ 125 (216)
.++.|.++|+.+++.+.++.-. + . ...+....+.+++.+.||++.+.++.+ ++...... ..+
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~ 220 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVF 220 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-cee
Confidence 2578999999999888887532 2 1 223333456677778899999999876 55432111 111
Q ss_pred cccccceEEEeeeecCeE-EEEe-CCCCcEEEEecccCeE----------------E----------eeeCCEEEEEEec
Q 043942 126 EFSLNYWMICTSLYDGVT-CLSW-PGTSKYLVTGCVDGKV----------------D----------GHIDAIQSLSVSA 177 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~-~~~~-~~~~~~l~~~~~~~~i----------------~----------~~~~~i~~~~~~~ 177 (216)
.. ...++. ...| .++|++++... +|.+ . ........++++|
T Consensus 221 ~~----------~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 221 HP----------EDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp SC----------TTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred cc----------ccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 00 001111 1233 34555443222 3443 0 0112233477788
Q ss_pred CCCeEEEEeC----------CCcEEEEEcccccceeecC
Q 043942 178 IRESLVSVSV----------DGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 178 ~~~~l~s~~~----------d~~v~vw~~~~~~~~~~~~ 206 (216)
+++.++.... .+.|.+.|+++.+.+..++
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 8887776532 2579999999988766543
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.86 E-value=8.5e-06 Score=60.18 Aligned_cols=167 Identities=8% Similarity=-0.025 Sum_probs=103.4
Q ss_pred ceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCc----------c---cCcEEEEEECCCcceeeeeec-
Q 043942 16 SFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG----------I---EDSTVWMWNADRGAYLNMFSG- 80 (216)
Q Consensus 16 ~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----------~---~~~~v~i~d~~~~~~~~~~~~- 80 (216)
...+..|+|++ .++++...++.|..||..+++.. .+...... . .+..|.+||..+++.......
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSS
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeCC
Confidence 45688999975 55666667889999999877543 22221110 0 334588889887765332211
Q ss_pred ---cCCCeeEEEEcCCCcEEEEecC------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942 81 ---HGSGLTCGDFTTDGKTICTGSD------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 81 ---~~~~v~~~~~~~~~~~l~t~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (216)
....+..++++|+|+++++... .+.|..+| +++... +.. .......++|+|++
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~---------------~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA---------------DISIPNSICFSPDG 190 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE---------------EESSEEEEEECTTS
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC---------------CCcccCCeEEcCCC
Confidence 1235789999999997765532 24566666 444322 221 33456788999999
Q ss_pred cEEEEe-cccCeE---E-----e--------------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 152 KYLVTG-CVDGKV---D-----G--------------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 152 ~~l~~~-~~~~~i---~-----~--------------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+.++.+ +.++.+ . + ....+..++++++|++.++...++.|.+|+. +++..
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~ 263 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI 263 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEE
Confidence 866544 333444 1 0 0123567888999987777766788999997 44443
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=81.31 Aligned_cols=114 Identities=8% Similarity=0.063 Sum_probs=62.3
Q ss_pred CCCceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCC------Cc-------c----cCcEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR------GG-------I----EDSTV 64 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~------~~-------~----~~~~v 64 (216)
++|+.+.+++. +.+.+..+..++..+++++.|+.|+.||..+++.+..+..+. .+ + .++.+
T Consensus 27 ~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v 104 (369)
T 2hz6_A 27 RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIW 104 (369)
T ss_dssp TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEE
T ss_pred CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEE
Confidence 57888777775 455555566677788888899999999999887765543221 11 0 57889
Q ss_pred EEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEee
Q 043942 65 WMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIR 121 (216)
Q Consensus 65 ~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~ 121 (216)
+.||.++|+.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..+.
T Consensus 105 ~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 105 YVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp EEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred EEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 999999999887776543 23456788899999999999999999998765554
No 228
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.78 E-value=6.6e-06 Score=58.31 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=86.7
Q ss_pred CCCCceeEEeeccccceEEEEEccCCCEEEE-EcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDGQLLAS-GGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWM 66 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i 66 (216)
+++|+.++++.-. .........++++.|.. .-.++.+.+||..+.+.+.++.....+. ..+.|.+
T Consensus 72 ~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~ 150 (262)
T 3nol_A 72 IESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRF 150 (262)
T ss_dssp TTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEE
T ss_pred CCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEE
Confidence 3577777777643 33334334444544444 4468899999999999999998654433 4567999
Q ss_pred EECCCcceeeeeecc--C---CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942 67 WNADRGAYLNMFSGH--G---SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS 124 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~--~---~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 124 (216)
+|..+.+.+..+.-. . ..++.+.|. +|+..+..-.+..|.+.|.++++....+....
T Consensus 151 iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 151 LDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG 212 (262)
T ss_dssp ECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred EcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence 999998887776532 1 335567876 77766666678899999999999998887643
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.73 E-value=2.1e-06 Score=67.71 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=105.2
Q ss_pred cCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcc-------------------------------------cCcEEE
Q 043942 24 TDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGI-------------------------------------EDSTVW 65 (216)
Q Consensus 24 ~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~-------------------------------------~~~~v~ 65 (216)
+||+++..... +..|.+.|+.+.+..+.+..+.... .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37877776654 5679999999998877554322110 356889
Q ss_pred EEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC---------------eEEEE---------------------
Q 043942 66 MWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA---------------TLSIW--------------------- 109 (216)
Q Consensus 66 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~---------------~i~~w--------------------- 109 (216)
++|..+.+...++.-- +....++++|+|+++++++.+. .+.+.
T Consensus 179 vID~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999988887776632 2457788999999998887553 23443
Q ss_pred --eCCC--Cce-eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cCeE-----E--------------
Q 043942 110 --NPKG--GEN-FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV-----D-------------- 164 (216)
Q Consensus 110 --d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i-----~-------------- 164 (216)
|.++ ++. +..++ .....-++.++|||+++++++. +..+ .
T Consensus 258 VID~~~~~~~~~~~~Ip----------------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIP----------------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp EEECSGGGCCSSEEEEE----------------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EEeCcccCCceeEEEEe----------------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 3333 211 12221 2345667899999998877654 3444 0
Q ss_pred ------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 165 ------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 165 ------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.-......++|+|+|...++.-.|+.|.+||+..
T Consensus 322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 1124678999999994444566699999999987
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=4.8e-06 Score=65.68 Aligned_cols=156 Identities=9% Similarity=0.009 Sum_probs=113.0
Q ss_pred EEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------------------------------------------
Q 043942 29 LASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------------------------------------------------- 59 (216)
Q Consensus 29 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------------------------------------------------- 59 (216)
|.||+..|.++|+-+.+++.++.+..-....
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 7788999999999999999988886422211
Q ss_pred ------------cCcEEEEEECCCcceeeeeecc-CCCeeEEEE-c-CCCcEEEEec------------------CCCeE
Q 043942 60 ------------EDSTVWMWNADRGAYLNMFSGH-GSGLTCGDF-T-TDGKTICTGS------------------DNATL 106 (216)
Q Consensus 60 ------------~~~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~t~~------------------~d~~i 106 (216)
.+..|.+.|+.+.+....+.-. ......+++ . |+++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 5677889999988877744422 245788888 5 8999998884 34679
Q ss_pred EEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCe---------------E--------
Q 043942 107 SIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGK---------------V-------- 163 (216)
Q Consensus 107 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~---------------i-------- 163 (216)
.++|..+.+...++.. ......++++|+|+++++.+.+.. +
T Consensus 178 tvID~~t~~v~~qI~V----------------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~ 241 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLV----------------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 241 (595)
T ss_dssp EEEETTTTEEEEEEEE----------------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred EEEECCCCeEEEEEEe----------------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence 9999999888777763 123455667888888877775531 1
Q ss_pred --------------------Ee-----------eeCCEEEEEEecCCCeEEEEe-CCCcEEEEEccccc
Q 043942 164 --------------------DG-----------HIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEFR 200 (216)
Q Consensus 164 --------------------~~-----------~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~~ 200 (216)
.. -.....++.++|||++++.++ .+.+|.++|+.+.+
T Consensus 242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~ 310 (595)
T 1fwx_A 242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 310 (595)
T ss_dssp HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred eEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccc
Confidence 11 112345688999999887665 47999999999653
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.72 E-value=1.3e-06 Score=71.23 Aligned_cols=164 Identities=10% Similarity=0.025 Sum_probs=100.8
Q ss_pred EEEEEccCCCEEEEEcCCCc-------------EEEEECCCCce--EEEEeCCC---Ccc--------------------
Q 043942 18 SSLAFSTDGQLLASGGFHGL-------------VQNRDTSSRNL--QCTVEGPR---GGI-------------------- 59 (216)
Q Consensus 18 ~~~~~s~~~~~l~s~~~d~~-------------v~vwd~~~~~~--~~~~~~~~---~~~-------------------- 59 (216)
..++|+ ||+.|+.++.+.. |++|++.+... ...+.... ...
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 578999 9999998887743 99999987642 22222221 100
Q ss_pred cCcEEEEEECCCcc-eeeeeeccCCCeeEEEEcCCCcEEE-EecCC---CeEEEEeCCCCce--eEEeecccccccccce
Q 043942 60 EDSTVWMWNADRGA-YLNMFSGHGSGLTCGDFTTDGKTIC-TGSDN---ATLSIWNPKGGEN--FHAIRRSSLEFSLNYW 132 (216)
Q Consensus 60 ~~~~v~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~-t~~~d---~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~ 132 (216)
..+.++++|+.++. ....+..+....... +++++..|+ ....+ +.|..+|+.++.. ...+..
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---------- 325 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---------- 325 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC----------
T ss_pred CCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec----------
Confidence 33588999987663 344555565555554 566665554 44433 6799999987654 233333
Q ss_pred EEEeeeecCeEEEEeCCCCcEEEEecccC---eE--------------EeeeCCEEEEEEecCCCeEEEEeCC----CcE
Q 043942 133 MICTSLYDGVTCLSWPGTSKYLVTGCVDG---KV--------------DGHIDAIQSLSVSAIRESLVSVSVD----GTA 191 (216)
Q Consensus 133 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~~---~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d----~~v 191 (216)
+...+. .|++++++|+....++ .+ ......+..+.++|++..++....+ +.+
T Consensus 326 -----~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l 398 (693)
T 3iuj_A 326 -----ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTL 398 (693)
T ss_dssp -----CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred -----CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence 334444 7778887776655433 12 1122346677778888766644433 789
Q ss_pred EEEEccccc
Q 043942 192 RVFEIAEFR 200 (216)
Q Consensus 192 ~vw~~~~~~ 200 (216)
+.||+.+++
T Consensus 399 ~~~d~~~g~ 407 (693)
T 3iuj_A 399 YRFEPKSGA 407 (693)
T ss_dssp EEECTTTCC
T ss_pred EEEECCCCe
Confidence 999987654
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=2.2e-06 Score=69.66 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=87.2
Q ss_pred EEEEEECCCcceeeeeec--cC-------CCeeEEEEcCCC---cEEEEecCCCeEEEEeCCCCceeEEeeccccccc--
Q 043942 63 TVWMWNADRGAYLNMFSG--HG-------SGLTCGDFTTDG---KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS-- 128 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-- 128 (216)
.|..+|.++++.+..++. |. .....+....+| +.++.++.+|.++++|.++|+.+..+........
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 588889999988877653 21 122233334467 6889999999999999999998877654321100
Q ss_pred --ccceEE--------------Eeee--ecCeEEEEeCCCCcEEEEeccc------------------------------
Q 043942 129 --LNYWMI--------------CTSL--YDGVTCLSWPGTSKYLVTGCVD------------------------------ 160 (216)
Q Consensus 129 --~~~~~~--------------~~~~--~~~v~~~~~~~~~~~l~~~~~~------------------------------ 160 (216)
...... +.+. ...-..++++|++.++++...+
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 000000 0000 0000145666766666554221
Q ss_pred -------------CeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 161 -------------GKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 161 -------------~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
+.+ ..+..++....+...+..++.++.||.+++||.++++.+-.+
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~ 514 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeee
Confidence 233 233344455566677888888999999999999999877544
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.68 E-value=4.2e-05 Score=57.44 Aligned_cols=169 Identities=13% Similarity=0.048 Sum_probs=98.5
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEECCCcceeeeeeccCCCe-----
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNADRGAYLNMFSGHGSGL----- 85 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~~~~~~~~~~~~~~~~v----- 85 (216)
++..++.++.++.|..+|..+++............ .++.+..+|.++++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 45677888889999999999999887766543211 68889999999998877765432211
Q ss_pred eEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE--
Q 043942 86 TCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV-- 163 (216)
Q Consensus 86 ~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i-- 163 (216)
...... +..++.++.++.+..+|..+++.+.......................++. .+..++.++.++.+
T Consensus 182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV------VNGVVFALAYNGNLTA 253 (376)
T ss_dssp CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE------ETTEEEEECTTSCEEE
T ss_pred CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE------ECCEEEEEecCcEEEE
Confidence 122222 45677888899999999999988776653211000000000000001100 12233333333333
Q ss_pred ----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 164 ----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 164 ----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.........+.. ++..+..++.++.+..+|..+++..-
T Consensus 254 ~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w 301 (376)
T 3q7m_A 254 LDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW 301 (376)
T ss_dssp EETTTCCEEEEECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred EECCCCcEEeeccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 111122333333 45667777889999999998877653
No 234
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=9.1e-06 Score=57.66 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=85.4
Q ss_pred CCCCceeEEeeccccceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEE
Q 043942 1 INQGDWASEILGHKDSFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWM 66 (216)
Q Consensus 1 l~~g~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i 66 (216)
+++|+.++++ - ..........+++ ++.+..-.++.+.+||..+.+.+.++.....+. .++.|.+
T Consensus 82 ~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~ 159 (268)
T 3nok_A 82 LESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTF 159 (268)
T ss_dssp SSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEE
T ss_pred CCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEE
Confidence 3567777766 2 2233332233333 455555678999999999999999998654433 5788999
Q ss_pred EECCCcceeeeeec--cC---CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942 67 WNADRGAYLNMFSG--HG---SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRS 123 (216)
Q Consensus 67 ~d~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 123 (216)
+|..+.+.+.++.- +. ..++.+.|. +|+..+..-.+..|.+.|.++++.+..+...
T Consensus 160 iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 160 HEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred EcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 99999888777653 21 245677877 7776666667889999999999999888864
No 235
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.66 E-value=5.9e-06 Score=63.18 Aligned_cols=99 Identities=11% Similarity=-0.042 Sum_probs=74.4
Q ss_pred cCCCEEEEEcC-C----CcEEEEECCCCceEEEEeCCCC-cc------------c-----------CcEEEEEECCCcce
Q 043942 24 TDGQLLASGGF-H----GLVQNRDTSSRNLQCTVEGPRG-GI------------E-----------DSTVWMWNADRGAY 74 (216)
Q Consensus 24 ~~~~~l~s~~~-d----~~v~vwd~~~~~~~~~~~~~~~-~~------------~-----------~~~v~i~d~~~~~~ 74 (216)
+++++++.+.. + +.|.++|..+++.+.++..... .+ . ++.|.++|..+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 46666555544 2 6999999999999988864222 22 1 45799999999988
Q ss_pred eeeeecc-------CCCeeEEEEcCCCcEEEEecC--CCeEEEEeCCCCceeEEeec
Q 043942 75 LNMFSGH-------GSGLTCGDFTTDGKTICTGSD--NATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 75 ~~~~~~~-------~~~v~~~~~~~~~~~l~t~~~--d~~i~~wd~~~~~~~~~~~~ 122 (216)
+..+.-. ......++++|||++++++.. ++.|.+.|+.+++.+..+..
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v 218 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV 218 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence 8776522 234568899999999998764 68899999999998887765
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.65 E-value=5.8e-06 Score=67.28 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=42.5
Q ss_pred EEEEEECCCcceeeeeec--cC-------CCeeEEEEcCCCc---EEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 63 TVWMWNADRGAYLNMFSG--HG-------SGLTCGDFTTDGK---TICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.|..+|.++|+.+..++. |. ..........+|+ .++.++.+|.++++|.++|+.+...+.
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI 347 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence 489999999998877654 21 1122222223565 788999999999999999998765543
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.64 E-value=2.7e-05 Score=55.62 Aligned_cols=156 Identities=10% Similarity=-0.002 Sum_probs=100.6
Q ss_pred CCCceeEEeeccc-cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC-CCcc-------------cCcEEEE
Q 043942 2 NQGDWASEILGHK-DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP-RGGI-------------EDSTVWM 66 (216)
Q Consensus 2 ~~g~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~~-------------~~~~v~i 66 (216)
++|+.+.++.-.. .....+++.. ++..++.-.++.+.++|..+.+.+.++... ..+. .++.|.+
T Consensus 52 ~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~v 130 (266)
T 2iwa_A 52 QTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYE 130 (266)
T ss_dssp TTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEE
T ss_pred CCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEE
Confidence 5677777665211 1222444542 244455556889999999999999998755 2222 6688999
Q ss_pred EECCCcceeeeeeccC-----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccccccc--ccceEEEeeee
Q 043942 67 WNADRGAYLNMFSGHG-----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFS--LNYWMICTSLY 139 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 139 (216)
+|..+.+.+..+.-.. ..++.+.|. ++...+....++.|.+.|..+++.+..+........ ... ....
T Consensus 131 iD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~----~~~~ 205 (266)
T 2iwa_A 131 IDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEG----FRDI 205 (266)
T ss_dssp ECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTT----CTTC
T ss_pred EECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccc----cccc
Confidence 9999888777765211 236788888 776666666789999999999999888875321100 000 0012
Q ss_pred cCeEEEEeCCCCcEEEEe-cccCeE
Q 043942 140 DGVTCLSWPGTSKYLVTG-CVDGKV 163 (216)
Q Consensus 140 ~~v~~~~~~~~~~~l~~~-~~~~~i 163 (216)
...+.++|+|+++.++++ ...+.+
T Consensus 206 ~v~nGIa~~~~~~~lfVTgk~~~~v 230 (266)
T 2iwa_A 206 DVLNGIAWDQENKRIFVTGKLWPKL 230 (266)
T ss_dssp CCEEEEEEETTTTEEEEEETTCSEE
T ss_pred CceEEEEEcCCCCEEEEECCCCCeE
Confidence 456899999998765554 344433
No 238
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.63 E-value=3.7e-05 Score=53.98 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=85.2
Q ss_pred CCCceeEEeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEE
Q 043942 2 NQGDWASEILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMW 67 (216)
Q Consensus 2 ~~g~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~ 67 (216)
++|+.++++.-.. ........++++ .....-.++.+.+||..+.+.+.++.....+. .++.|.++
T Consensus 51 ~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~i 129 (243)
T 3mbr_X 51 ETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKL 129 (243)
T ss_dssp TTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEE
T ss_pred CCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEE
Confidence 5677777665332 223333333344 44455678999999999999999998654433 67789999
Q ss_pred ECCCcceeeeeeccC-----CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeeccc
Q 043942 68 NADRGAYLNMFSGHG-----SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSS 124 (216)
Q Consensus 68 d~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~ 124 (216)
|..+.+.+.++.-.. ..++.+.|. +|+..+..-.+..|.+.|.++++.+..+....
T Consensus 130 Dp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~ 190 (243)
T 3mbr_X 130 DPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQA 190 (243)
T ss_dssp CTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGG
T ss_pred eCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCc
Confidence 999988877765321 345677766 67766666578899999999999998888643
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.62 E-value=9.6e-06 Score=61.93 Aligned_cols=170 Identities=14% Similarity=0.043 Sum_probs=107.6
Q ss_pred ceEEEEEccCCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc-----------------c------------
Q 043942 16 SFSSLAFSTDGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI-----------------E------------ 60 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~-----------------~------------ 60 (216)
....+..+|+| .++++..+ +.+.+.|..+.+.+.++....... .
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 34566788999 77776655 789999999999998886432110 1
Q ss_pred ---------CcEEEEEECCCcceeeeeecc-C-CCeeEEEE--cCCCcEEEEec------CCCeEEEEeCCCCcee--EE
Q 043942 61 ---------DSTVWMWNADRGAYLNMFSGH-G-SGLTCGDF--TTDGKTICTGS------DNATLSIWNPKGGENF--HA 119 (216)
Q Consensus 61 ---------~~~v~i~d~~~~~~~~~~~~~-~-~~v~~~~~--~~~~~~l~t~~------~d~~i~~wd~~~~~~~--~~ 119 (216)
..+|.+||+.+++.+.++..- . .....++| +|+++++.+++ .+++|.+|..+.++.. +.
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEE
T ss_pred chhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEE
Confidence 699999999998877777642 1 23456656 99999887766 5678888777655321 12
Q ss_pred eecccccccccc--e-EEEeeeecCeEEEEeCCCCcEEEEecc-cCeE---------------EeeeC------------
Q 043942 120 IRRSSLEFSLNY--W-MICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV---------------DGHID------------ 168 (216)
Q Consensus 120 ~~~~~~~~~~~~--~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i---------------~~~~~------------ 168 (216)
+........... . ..+.+.......+.+++||++|+++.. .+.| ....+
T Consensus 298 Idi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~ 377 (462)
T 2ece_A 298 IEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH 377 (462)
T ss_dssp EEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC
T ss_pred EeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc
Confidence 111100000000 0 000000245678999999999888765 3333 00111
Q ss_pred ----CEEEEEEecCCCeEEEEe
Q 043942 169 ----AIQSLSVSAIRESLVSVS 186 (216)
Q Consensus 169 ----~i~~~~~~~~~~~l~s~~ 186 (216)
....+.++|||++|+++.
T Consensus 378 ~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 378 KLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCSCCCCEEECTTSSEEEEEC
T ss_pred cCCCCCCEEEEcCCCCEEEEEc
Confidence 257899999999998887
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.61 E-value=4.6e-05 Score=54.41 Aligned_cols=176 Identities=7% Similarity=-0.069 Sum_probs=98.7
Q ss_pred cceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCC-Cc--c--------------cCcEEEEEECCCcceee
Q 043942 15 DSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPR-GG--I--------------EDSTVWMWNADRGAYLN 76 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~-~~--~--------------~~~~v~i~d~~~~~~~~ 76 (216)
..+..++|+++++.|. +-...+.|.++++........+.... .+ + ..+.|.++++.......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3567899999665554 55567899999997665433332211 11 1 33455555554322111
Q ss_pred eeeccCCCeeEEEEcCCCcEEEEecC---CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 77 MFSGHGSGLTCGDFTTDGKTICTGSD---NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~~l~t~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
...........++++|++..|..+.. .+.|..+++. +.....+... .......+++++++..
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~--------------~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQD--------------NLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECT--------------TCSCEEEEEEETTTTE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEEC--------------CCCCCcEEEEcCCCCE
Confidence 12112245789999996555544443 4688888876 3333322210 2245678899987665
Q ss_pred EEEe-cccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecC
Q 043942 154 LVTG-CVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAP 206 (216)
Q Consensus 154 l~~~-~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~ 206 (216)
|+.+ ...+.| .........++.. .+.++++....+.|.++|..+++....++
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 5444 444555 1111234566553 33444444456899999998877665543
No 241
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.58 E-value=1e-05 Score=60.15 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=56.7
Q ss_pred cceEEEEEccCCCEEEEEcC--CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC
Q 043942 15 DSFSSLAFSTDGQLLASGGF--HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT 92 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~ 92 (216)
..+..++++++|+.+++... ++.+++|.+.+++. ..+. . .. .....+-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p--~---------------~~--~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFP--P---------------QS--GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESC--C---------------CC--SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCC--C---------------cc--cCcccceeEeeEEEEcC
Confidence 67899999999999988642 34345555433221 1100 0 00 01123556789999999
Q ss_pred CCcEEEEecC-----CCeEEEEeCCCCceeEEeec
Q 043942 93 DGKTICTGSD-----NATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 93 ~~~~l~t~~~-----d~~i~~wd~~~~~~~~~~~~ 122 (216)
+++++++-.. ++.|.+||+.+++.+..+..
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~ 111 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYL 111 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEEC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEEC
Confidence 9887766543 57899999999987766653
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.54 E-value=8.4e-06 Score=59.86 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=96.4
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc--------------cCcEEEEEEC
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI--------------EDSTVWMWNA 69 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--------------~~~~v~i~d~ 69 (216)
|+.......+...+.++...+++. +..++.++.+..+|.. ++....+....... . +.+..+|
T Consensus 126 g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-~~l~~~d- 201 (330)
T 3hxj_A 126 GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-DKVYAIN- 201 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-SSEEEEC-
T ss_pred CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-CEEEEEC-
Confidence 344444444444556666766666 5556677889999988 77666555432221 3 5667777
Q ss_pred CCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 70 DRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
.+++...........+.++...+++.. ..++.++.+..+|. +++....+... ...+..+...+
T Consensus 202 ~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~-~g~~~~~~~~~---------------~~~~~~~~~~~ 264 (330)
T 3hxj_A 202 PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDGHLYAINP-DGTEKWRFKTG---------------KRIESSPVIGN 264 (330)
T ss_dssp TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTTEEEEECT-TSCEEEEEECS---------------SCCCSCCEECT
T ss_pred CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCCeEEEECC-CCCEeEEeeCC---------------CCccccceEcC
Confidence 666666555555566778888877654 44556777888874 45555544431 11112233333
Q ss_pred CCcEEEEecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 150 TSKYLVTGCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 150 ~~~~l~~~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
++. ++.++.+|.+ ......+.++..+++|+ |..++.+|.+++...+.
T Consensus 265 ~g~-l~v~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 265 TDT-IYFGSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TSC-EEEECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCe-EEEecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 443 3344444333 11122344555556665 45577788888876554
No 243
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.53 E-value=1.8e-05 Score=64.35 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCC-C----Ccc---------------c------CcEEEEEECCCcceeeee
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGP-R----GGI---------------E------DSTVWMWNADRGAYLNMF 78 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~----~~~---------------~------~~~v~i~d~~~~~~~~~~ 78 (216)
++..++.++.|+.+..+|..+++.+.++... . ..+ . ++.|+.+|.++|+.+..+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 4567888889999999999999999888765 2 011 1 689999999999988766
Q ss_pred eccCC--------------------------------CeeEEEEcCCCcEEEEecCCC-------------------eEE
Q 043942 79 SGHGS--------------------------------GLTCGDFTTDGKTICTGSDNA-------------------TLS 107 (216)
Q Consensus 79 ~~~~~--------------------------------~v~~~~~~~~~~~l~t~~~d~-------------------~i~ 107 (216)
..... ....++++|++..+..++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 53221 113578899888888877664 599
Q ss_pred EEeCCCCceeEEeec
Q 043942 108 IWNPKGGENFHAIRR 122 (216)
Q Consensus 108 ~wd~~~~~~~~~~~~ 122 (216)
.+|.++|+.+-.+..
T Consensus 287 AlD~~TG~~~W~~~~ 301 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQE 301 (677)
T ss_dssp EECTTTCCEEEEEES
T ss_pred EEECCCCCEEEEEec
Confidence 999999998877764
No 244
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.53 E-value=5.8e-06 Score=60.71 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=94.1
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc---------------cCcEEEEEECCCcceeeeeeccCCCeeEEEE
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI---------------EDSTVWMWNADRGAYLNMFSGHGSGLTCGDF 90 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---------------~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~ 90 (216)
+..+..++.++.+..+|.. ++.......+.... .++.+..+|.. ++....+......+.++..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~ 184 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASI 184 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEE
Confidence 4567778888899999988 76665555433221 45888889988 7776666655566777888
Q ss_pred cCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------
Q 043942 91 TTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------- 163 (216)
Q Consensus 91 ~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------- 163 (216)
.+++..++.. +.+..+| .+++....... ....+.++...++|.+.+ ++.++.+
T Consensus 185 d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~---------------~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 185 GKDGTIYFGS---DKVYAIN-PDGTEKWNFYA---------------GYWTVTRPAISEDGTIYV-TSLDGHLYAINPDG 244 (330)
T ss_dssp CTTCCEEEES---SSEEEEC-TTSCEEEEECC---------------SSCCCSCCEECTTSCEEE-EETTTEEEEECTTS
T ss_pred cCCCEEEEEe---CEEEEEC-CCCcEEEEEcc---------------CCcceeceEECCCCeEEE-EcCCCeEEEECCCC
Confidence 7777755544 7899999 66776655543 233455566666655433 3333333
Q ss_pred ------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccc
Q 043942 164 ------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRR 201 (216)
Q Consensus 164 ------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~ 201 (216)
......+..+...+++ .|..++.+|.+..+|. +++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTE 286 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCE
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcE
Confidence 1111122334444455 4566777888988885 4443
No 245
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.52 E-value=8.2e-05 Score=55.83 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=96.2
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc---------c----------cCcEEEEEECCCcceeeeeeccCCC--
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG---------I----------EDSTVWMWNADRGAYLNMFSGHGSG-- 84 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---------~----------~~~~v~i~d~~~~~~~~~~~~~~~~-- 84 (216)
+..++.++.++.+..+|..+++........... . .++.+..+|..+++.+.........
T Consensus 143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 347788888999999999999888776553221 1 5788999999999887665422110
Q ss_pred -----eeEEEEcC--CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 85 -----LTCGDFTT--DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 85 -----v~~~~~~~--~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
+..+.-.| .+..+..++.++.+..+|.++++.+....... ...+.. ++..++.+
T Consensus 223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-----------------~~~~~~--~~~~l~~~ 283 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-----------------VNDFIV--DGNRIYLV 283 (376)
T ss_dssp -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-----------------EEEEEE--ETTEEEEE
T ss_pred cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-----------------CCCceE--ECCEEEEE
Confidence 00011111 24577778889999999999998876654311 112222 13344444
Q ss_pred cccCeEE-----------ee----eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 158 CVDGKVD-----------GH----IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 158 ~~~~~i~-----------~~----~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
+.++.+. .. ...+..... .+..|+.++.+|.++++|..+++....
T Consensus 284 ~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 284 DQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp ETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 4444440 00 011111222 245677888899999999998876543
No 246
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.41 E-value=0.00018 Score=51.08 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=101.6
Q ss_pred EeeccccceEEEEEccCCC-EEEEEcCCCcEEEEECCCCceEEEEeCCC----Ccc-------------cCcEEEEEECC
Q 043942 9 EILGHKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSRNLQCTVEGPR----GGI-------------EDSTVWMWNAD 70 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~----~~~-------------~~~~v~i~d~~ 70 (216)
.+.+-.+.+..++|+|+++ ++++...++.|...|.. ++.++.+.... .++ .++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4445556899999999765 55557778889999998 88888775421 111 45667777765
Q ss_pred Ccce---eeeee------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCC---CceeEEeecccccccccceEEEeee
Q 043942 71 RGAY---LNMFS------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKG---GENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 71 ~~~~---~~~~~------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
.... +.... ..+.....++|+|+++.|.++.......+|.++. ...+........... ..
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~--------~~ 171 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQ--------FT 171 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHT--------CC
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccc--------cc
Confidence 4331 12221 1344568999999987777776555555555541 111222211000000 02
Q ss_pred ecCeEEEEeCCCCcEE-EEecccCeE----------------Ee------eeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 139 YDGVTCLSWPGTSKYL-VTGCVDGKV----------------DG------HIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l-~~~~~~~~i----------------~~------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
...+..++++|....+ +.+.....+ .+ .......++|+++|++.++ ++.+.++++.
T Consensus 172 ~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 172 LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 2345777887754443 333333333 11 1135689999999985555 6666555554
No 247
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.35 E-value=4.7e-05 Score=62.03 Aligned_cols=178 Identities=10% Similarity=0.041 Sum_probs=106.5
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---------------cc----------cCcEEEEEECCCcceeeeeec
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---------------GI----------EDSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------------~~----------~~~~v~i~d~~~~~~~~~~~~ 80 (216)
+..++.++.++.|..+|..+++.+-++..... .. .++.|+.+|.++|+.+..+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 55677788889999999999999888754321 01 689999999999998877654
Q ss_pred c--CCCeeEEEEcC---CCcEEEEec-----CCCeEEEEeCCCCceeEEeeccccccccc-----------c-----eEE
Q 043942 81 H--GSGLTCGDFTT---DGKTICTGS-----DNATLSIWNPKGGENFHAIRRSSLEFSLN-----------Y-----WMI 134 (216)
Q Consensus 81 ~--~~~v~~~~~~~---~~~~l~t~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~-----------~-----~~~ 134 (216)
. ......+..+| ++..++..+ .++.|..||.++|+.+-.+.......... . +..
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~ 229 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE 229 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence 2 11111111222 444444322 37899999999999887775321100000 0 000
Q ss_pred EeeeecCeEEEEeCCCCcEEEEecccCe-------------------E--------------Ee--e-------eCCEEE
Q 043942 135 CTSLYDGVTCLSWPGTSKYLVTGCVDGK-------------------V--------------DG--H-------IDAIQS 172 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~l~~~~~~~~-------------------i--------------~~--~-------~~~i~~ 172 (216)
..+.......++++|+...++.+..++. + .. | ..++.-
T Consensus 230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l 309 (689)
T 1yiq_A 230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL 309 (689)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence 0001111224667777777777766542 3 10 1 112222
Q ss_pred EEEecCCC---eEEEEeCCCcEEEEEccccccee
Q 043942 173 LSVSAIRE---SLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 173 ~~~~~~~~---~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.....+|+ .++.++.+|.++++|..+++.+.
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 343 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLS 343 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence 22233564 78889999999999999998764
No 248
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.32 E-value=0.00021 Score=52.90 Aligned_cols=155 Identities=11% Similarity=0.146 Sum_probs=98.0
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCCC-Ccc---------------------c--CcEEEEEECC--Ccceeeee
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPR-GGI---------------------E--DSTVWMWNAD--RGAYLNMF 78 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~-~~~---------------------~--~~~v~i~d~~--~~~~~~~~ 78 (216)
...+++.....+-+.+||+ +++.++.+.... ..+ . +++|.+|++. ++. +..+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 3456777777889999999 888888775311 111 4 7899999763 333 4333
Q ss_pred ec------cC-CCeeEEEE--cCC-Cc-EEEEecCCCeEEEEeCC---CC----ceeEEeecccccccccceEEEeeeec
Q 043942 79 SG------HG-SGLTCGDF--TTD-GK-TICTGSDNATLSIWNPK---GG----ENFHAIRRSSLEFSLNYWMICTSLYD 140 (216)
Q Consensus 79 ~~------~~-~~v~~~~~--~~~-~~-~l~t~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (216)
.. .. ..+..+++ +|. ++ ++++...++.+..|++. .+ +.+.++.. ..
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----------------gs 180 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----------------NS 180 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----------------SS
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----------------CC
Confidence 21 11 45667777 674 43 67778888999999983 22 44555553 34
Q ss_pred CeEEEEeCCCCcEEEEecccCeE---------------------EeeeCCEEEEEE--ecCCC-eEEEEe-CCCcEEEEE
Q 043942 141 GVTCLSWPGTSKYLVTGCVDGKV---------------------DGHIDAIQSLSV--SAIRE-SLVSVS-VDGTARVFE 195 (216)
Q Consensus 141 ~v~~~~~~~~~~~l~~~~~~~~i---------------------~~~~~~i~~~~~--~~~~~-~l~s~~-~d~~v~vw~ 195 (216)
.+..+...+....|+.+-++..| ......+..+++ .++++ ||++++ .++++.+||
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 55566666665666665555444 011135777777 45555 666666 478999999
Q ss_pred cc
Q 043942 196 IA 197 (216)
Q Consensus 196 ~~ 197 (216)
..
T Consensus 261 r~ 262 (355)
T 3amr_A 261 RQ 262 (355)
T ss_dssp SS
T ss_pred CC
Confidence 96
No 249
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.29 E-value=0.00011 Score=53.94 Aligned_cols=161 Identities=6% Similarity=0.058 Sum_probs=98.1
Q ss_pred eeccccceEEEEEccCCCEEEEEc-CCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeec------cC
Q 043942 10 ILGHKDSFSSLAFSTDGQLLASGG-FHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSG------HG 82 (216)
Q Consensus 10 ~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~------~~ 82 (216)
+....--..++.|.+....|..++ ..+.|..||...+..... .+.+ ..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-------------------------~~~~~s~~g~~~ 62 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-------------------------VIDGASSNGDGE 62 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-------------------------CCTTTCCSSCCS
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-------------------------ecCCccccCCCc
Confidence 333344456789988555555544 677777777653322111 1111 11
Q ss_pred CCeeEEEE---cCCCcEEEEec-------------CCCeEEEEeCC---CCceeEEeeccccccc--ccceEEEeeeecC
Q 043942 83 SGLTCGDF---TTDGKTICTGS-------------DNATLSIWNPK---GGENFHAIRRSSLEFS--LNYWMICTSLYDG 141 (216)
Q Consensus 83 ~~v~~~~~---~~~~~~l~t~~-------------~d~~i~~wd~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 141 (216)
..+..|.| .|+++++++.. .++.+..+|+. +++.+........... ... ......
T Consensus 63 ~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~----g~~~~~ 138 (334)
T 2p9w_A 63 QQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKA----GKRPFG 138 (334)
T ss_dssp EEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHH----SSCCEE
T ss_pred ceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccc----cccccC
Confidence 13478999 68877777543 26789999999 7877665543211000 000 001124
Q ss_pred eEEEEeCCCCcEEEEeccc-CeE------------Eee-------eCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 142 VTCLSWPGTSKYLVTGCVD-GKV------------DGH-------IDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~-~~i------------~~~-------~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
...++..++|+..++++.. +.| ... ....+.++++|+|+.|++....+.+..+|+...
T Consensus 139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 139 VVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred CceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 7788889999888877776 665 000 112458999999998888766999999998753
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.29 E-value=0.00046 Score=50.67 Aligned_cols=166 Identities=12% Similarity=0.052 Sum_probs=96.9
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCC----------------------CCcc---c-CcE-----
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGP----------------------RGGI---E-DST----- 63 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~----------------------~~~~---~-~~~----- 63 (216)
....+++|+++++++.++..++.|..||..+++........ ..++ . ++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 44678899999987888888899999998765433211100 0000 1 344
Q ss_pred ----EEEEECCCcceeeeeec-----cCCCeeEEEEcC-CCcEEEEecC-----------------CCeEEEEeCCCCce
Q 043942 64 ----VWMWNADRGAYLNMFSG-----HGSGLTCGDFTT-DGKTICTGSD-----------------NATLSIWNPKGGEN 116 (216)
Q Consensus 64 ----v~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~t~~~-----------------d~~i~~wd~~~~~~ 116 (216)
+..+|..++.. ..+.. .......+++.+ +|+..++-.. ++.|..+|..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 44444443321 11111 113467899999 8887776432 36788888776654
Q ss_pred eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe-cccCeEE---------------eeeCCEEEEEEecCCC
Q 043942 117 FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG-CVDGKVD---------------GHIDAIQSLSVSAIRE 180 (216)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~~i~---------------~~~~~i~~~~~~~~~~ 180 (216)
..... .......++++|++++++.+ ..++.|. ........++++++|+
T Consensus 178 ~~~~~----------------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~ 241 (322)
T 2fp8_A 178 TLLLK----------------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGH 241 (322)
T ss_dssp EEEEE----------------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSC
T ss_pred EEecc----------------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCC
Confidence 32221 22345678899998866554 4445550 0011167789999998
Q ss_pred eEEEEeC----------CCcEEEEEcc
Q 043942 181 SLVSVSV----------DGTARVFEIA 197 (216)
Q Consensus 181 ~l~s~~~----------d~~v~vw~~~ 197 (216)
+.++... .+.|..+|..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred EEEEecCcccccccCCCccEEEEECCC
Confidence 7776544 3556777653
No 251
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.08 E-value=1.3e-05 Score=60.24 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=62.5
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec----------CCCeEEEEeCCCCceeEEeeccc-ccccccc
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS----------DNATLSIWNPKGGENFHAIRRSS-LEFSLNY 131 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~----------~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~ 131 (216)
+|.++|..+++.+.++..-..+ .+.++||+++++++. .++.|.+||+.+++.+..+.... ..+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~--- 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--- 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC---
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc---
Confidence 7888888888888887654454 799999999998886 47889999999999998886410 0000
Q ss_pred eEEEeeeecCeEEEEeCCCCcEEEEecc
Q 043942 132 WMICTSLYDGVTCLSWPGTSKYLVTGCV 159 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 159 (216)
.......+.++|||++++++..
T Consensus 122 ------~g~~P~~ia~SpDGk~lyVan~ 143 (368)
T 1mda_H 122 ------VGPRVHIIGNCASSACLLFFLF 143 (368)
T ss_dssp ------BSCCTTSEEECTTSSCEEEEEC
T ss_pred ------cCCCcceEEEcCCCCEEEEEcc
Confidence 0123456778888888777653
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.08 E-value=0.0017 Score=49.11 Aligned_cols=172 Identities=9% Similarity=-0.056 Sum_probs=93.9
Q ss_pred cceEEEEEccCCCEE-EEEcCCCcEEEEECCCCceEEEEeCCC---Ccc----cCcEEEEEE----------CCCcceee
Q 043942 15 DSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSSRNLQCTVEGPR---GGI----EDSTVWMWN----------ADRGAYLN 76 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~----~~~~v~i~d----------~~~~~~~~ 76 (216)
..+..++|++.+..| .+-...+.|+.+++........+.... .++ .++.+++-| +.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 456789999755544 455567889999988765444332211 111 234444444 33222222
Q ss_pred eeeccCCCeeEEEEcCCCcEEEEe-cCC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 77 MFSGHGSGLTCGDFTTDGKTICTG-SDN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~~l~t~-~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
.+.........++++|.+..|..+ ... +.|..+++........... .......++++|++..|
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~---------------~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT---------------HLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---------------SCSCEEEEEEEGGGTEE
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC---------------CCCCeeeEEEeCCCCEE
Confidence 222223457889999866655444 344 6788888774332222221 22345678887655444
Q ss_pred EEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 155 VTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 155 ~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+.+ ...+.| .........+++ ..+.++++-...+.|..++..+++..
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 433 333444 111235567777 34455556556788888885555543
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.07 E-value=0.0007 Score=55.00 Aligned_cols=97 Identities=13% Similarity=0.135 Sum_probs=70.6
Q ss_pred CCEEEEEcCCCcEEEEECCCCceEEEEeCCCC---------cc----------c------CcEEEEEECCCcceeeeeec
Q 043942 26 GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRG---------GI----------E------DSTVWMWNADRGAYLNMFSG 80 (216)
Q Consensus 26 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------~~----------~------~~~v~i~d~~~~~~~~~~~~ 80 (216)
+..++.++.|+.|..+|..+++.+.+...... +. . ++.|+.+|.++|+.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 45788888899999999999998887765321 10 1 58899999999998877642
Q ss_pred cC-------------------------------CCeeEEEEcCCCcEEEEecCCCe-------------------EEEEe
Q 043942 81 HG-------------------------------SGLTCGDFTTDGKTICTGSDNAT-------------------LSIWN 110 (216)
Q Consensus 81 ~~-------------------------------~~v~~~~~~~~~~~l~t~~~d~~-------------------i~~wd 110 (216)
.. .....++++|+...+..++.++. |..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 10 01124688888888888877663 88888
Q ss_pred CCCCceeEEeec
Q 043942 111 PKGGENFHAIRR 122 (216)
Q Consensus 111 ~~~~~~~~~~~~ 122 (216)
.++|+.+-.+..
T Consensus 277 ~~tG~~~W~~~~ 288 (668)
T 1kv9_A 277 PDTGKLAWHYQV 288 (668)
T ss_dssp TTTCCEEEEEES
T ss_pred CCCCceeeEeec
Confidence 888887766653
No 254
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.06 E-value=0.0014 Score=52.26 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=41.6
Q ss_pred EEEEEECCCcceeeeeecc--CC-------CeeEEEEcCCCc---EEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 63 TVWMWNADRGAYLNMFSGH--GS-------GLTCGDFTTDGK---TICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~--~~-------~v~~~~~~~~~~---~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.|..+|.++++.+..++.. .. ...-+...++|+ .++.++.+|.+.++|..+|+.+..+..
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 5888999999887776532 11 111122224674 577889999999999999998876654
No 255
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.00 E-value=0.00058 Score=55.49 Aligned_cols=60 Identities=12% Similarity=0.270 Sum_probs=47.3
Q ss_pred cEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 62 STVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+.|..||+.+++.+.+...+ .......+...+.++++++.|+.++.||.++++.+..+..
T Consensus 438 g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 78999999999988776633 3333334445678899999999999999999999888865
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.99 E-value=0.0023 Score=47.63 Aligned_cols=172 Identities=11% Similarity=-0.024 Sum_probs=94.9
Q ss_pred cceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCCC---Ccc--------------cCcEEEEEECCCcceee
Q 043942 15 DSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGPR---GGI--------------EDSTVWMWNADRGAYLN 76 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~---~~~--------------~~~~v~i~d~~~~~~~~ 76 (216)
..+..++|++....|. +-...+.|+.+++........+.... .++ ..+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3467899997655554 44567889999988765444332211 111 33455555554332222
Q ss_pred eeeccCCCeeEEEEcCCCcEE-EEecCC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 77 MFSGHGSGLTCGDFTTDGKTI-CTGSDN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~~l-~t~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
.+...-.....++++|.+..| ++-... +.|..+++.. .....+... .-.....++++|++..|
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~--------------~~~~PnGla~d~~~~~l 217 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADT--------------HLFWPNGLTIDYAGRRM 217 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCS--------------SCSCEEEEEEETTTTEE
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEEC--------------CCCCcceEEEeCCCCEE
Confidence 222233457899999865544 444444 7888888773 333332210 22346778888755544
Q ss_pred EEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 155 VTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 155 ~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+.+ ...+.| .........+++ .++..+++-...+.|...+..+++..
T Consensus 218 Y~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 218 YWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCcc
Confidence 443 333444 111235567777 34455555556778888875555443
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.97 E-value=0.0019 Score=45.95 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=76.5
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeee
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSL 138 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (216)
.++.|..+++........+.........++++|++.. +++-...+.|.++++........... .
T Consensus 56 ~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~---------------~ 120 (267)
T 1npe_A 56 SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT---------------G 120 (267)
T ss_dssp TTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------S
T ss_pred CCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC---------------C
Confidence 4567888888755433333222246789999996554 45555678999999874332222221 1
Q ss_pred ecCeEEEEeCCCCcEEEEecc---cCeE------------E--eeeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccccc
Q 043942 139 YDGVTCLSWPGTSKYLVTGCV---DGKV------------D--GHIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAEFR 200 (216)
Q Consensus 139 ~~~v~~~~~~~~~~~l~~~~~---~~~i------------~--~~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~~~ 200 (216)
......++++|++..++.+.. .+.+ . ........++++|++..|. +....+.|.++++....
T Consensus 121 ~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 234578888885554443332 2344 0 1123578899999876665 44556899999987543
No 258
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.00062 Score=52.30 Aligned_cols=118 Identities=7% Similarity=-0.091 Sum_probs=65.2
Q ss_pred EEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CC----eEEEEeCCCCcee--EEeecccccccccceEEE
Q 043942 63 TVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NA----TLSIWNPKGGENF--HAIRRSSLEFSLNYWMIC 135 (216)
Q Consensus 63 ~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~----~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~ 135 (216)
.|+.+|+.++.... +.........++|+++++.|+.+.. ++ .+.+++.. +... ..+.
T Consensus 160 ~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~-------------- 223 (430)
T 3tc9_A 160 PTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELT-------------- 223 (430)
T ss_dssp EEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEE--------------
T ss_pred cEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeec--------------
Confidence 34444544433222 2223456789999999996655543 11 23334432 2221 1111
Q ss_pred eeeecCeEEEEeCC-CCcEEEEecccCeE---------E---e---eeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccc
Q 043942 136 TSLYDGVTCLSWPG-TSKYLVTGCVDGKV---------D---G---HIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAE 198 (216)
Q Consensus 136 ~~~~~~v~~~~~~~-~~~~l~~~~~~~~i---------~---~---~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~ 198 (216)
.......++++| ++.++++-..++.+ . . .......++|+|+|++|. +-...+.|..++...
T Consensus 224 --~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 224 --KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp --ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred --cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 123456677888 66655555455555 0 0 112467899999999554 445578899988653
No 259
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.92 E-value=0.0012 Score=50.13 Aligned_cols=133 Identities=11% Similarity=0.075 Sum_probs=82.5
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcC---
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTT--- 92 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~--- 92 (216)
.|..+..||+|++||..+ +..|.|-.+..+..... +......-.++.|.+...+ .....+|..+.|+|
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~---~~~~~~~~q~~ty~l~~~~-----~~~~s~I~qVlWHPl~~ 137 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVE---DVSIQDAFQIFHYSIDEEE-----VGPKSSIKKVLFHPKSY 137 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCC---CHHHHHTTEEEEEEGGGCC-------CCCCEEEEEECTTBG
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCc---ccccccccceeEEEcCCcc-----cCCCCceeEEEeccccC
Confidence 578899999999999987 56788888874321100 0000011224455554211 11357899999999
Q ss_pred CCcEEEEecCCCeEEEEeCCCCcee-EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe--cccCeE
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENF-HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG--CVDGKV 163 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~~i 163 (216)
.+..|++-..|+.|++||+...... ..+..... ..........+.+++|.+++-.|+.. .++|.|
T Consensus 138 ~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~------~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 138 RDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNN------SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp GGCEEEEEETTSCEEEEETTCTTSCCEEESCCCS------EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred CCCeEEEEecCCEEEEEEcccCCCCCcchhcccc------ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 4568999999999999999863211 12321100 00111134778999999988777774 478877
No 260
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.87 E-value=0.00016 Score=59.60 Aligned_cols=104 Identities=9% Similarity=-0.097 Sum_probs=63.8
Q ss_pred ceEEEEEc-cCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCc-ceee-eeeccCCCeeEEEEc
Q 043942 16 SFSSLAFS-TDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRG-AYLN-MFSGHGSGLTCGDFT 91 (216)
Q Consensus 16 ~v~~~~~s-~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~-~~~~-~~~~~~~~v~~~~~~ 91 (216)
.+...+|| |||++||-+.. +|. ...+|+++|+.++ +.+. .+. .....++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~----------------------~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Ws 229 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGN----------------------EVYTIEFKRISDPSQTIADKVS---GTNGEIVWG 229 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSS----------------------SCEEEEEEETTCTTCCCCCCEE---EECSCCEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCC----------------------ceEEEEEEECCCCCEeCCcccc---CceeeEEEe
Confidence 57789999 99998886543 221 1234566666655 4221 111 123578999
Q ss_pred CCCcEEEEecCC-----CeEEEEeCCCCce--eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 92 TDGKTICTGSDN-----ATLSIWNPKGGEN--FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 92 ~~~~~l~t~~~d-----~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
||++.|+....| ..|+++++.++.. ...+... .......+.|+|||++|+...
T Consensus 230 pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~--------------~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 230 PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEH--------------NPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECC--------------CTTCEEEEEECTTSSEEEEEE
T ss_pred cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecC--------------CCceEEEEEECCCCCEEEEEe
Confidence 999888776654 3688888876642 2222210 223356788999999877654
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.84 E-value=0.0042 Score=49.80 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=43.1
Q ss_pred cEEEEEECCCcceeeeeeccCC---------CeeEEEEc-CCC---cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 62 STVWMWNADRGAYLNMFSGHGS---------GLTCGDFT-TDG---KTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~~~~---------~v~~~~~~-~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+.|..+|.++++.+..++.... ...-+... .+| +.++.++.+|.+.++|.++|+.+.....
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKL 351 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccc
Confidence 4788999999988877654221 11112222 467 5677889999999999999998876653
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.84 E-value=0.0065 Score=48.57 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=43.2
Q ss_pred cEEEEEECCCcceeeeeec--cCC-------CeeEEEEc-CCC---cEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 62 STVWMWNADRGAYLNMFSG--HGS-------GLTCGDFT-TDG---KTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~~~~~--~~~-------~v~~~~~~-~~~---~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
+.|..+|..+|+.+..++. |.. ...-+... .+| ..++.++.+|.++++|.++|+.+..+..
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 5789999999998877653 211 11112222 466 3788899999999999999998876654
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.82 E-value=0.0049 Score=45.89 Aligned_cols=167 Identities=10% Similarity=-0.005 Sum_probs=90.8
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeee
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFS 79 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~ 79 (216)
...|.+..++. +|+.+. ...|+..++...+....+.....+. ..+.|..+++........+.
T Consensus 35 ~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp SSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34555555533 444333 3457777776655444433322221 33444444444333222222
Q ss_pred ccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-Ee
Q 043942 80 GHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TG 157 (216)
Q Consensus 80 ~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 157 (216)
........+++.+. +++.++-...+.|.+.++........+.. .......++++|.+..++ +-
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~---------------~l~~P~~iavdp~~g~ly~td 177 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------------SLEKPRAIALHPMEGTIYWTD 177 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT---------------TCSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC---------------CCCCcceEEEecCcCeEEEec
Confidence 22234578899874 44556666778899999874433222221 224467788887554443 33
Q ss_pred ccc-CeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccc
Q 043942 158 CVD-GKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEF 199 (216)
Q Consensus 158 ~~~-~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~ 199 (216)
... +.| .........++++|++..|..+ +..+.|..+++...
T Consensus 178 ~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 178 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp CSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 333 444 1122357899999876666544 45678999987653
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.78 E-value=0.0023 Score=51.16 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=44.2
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.+.|..||+.+++.+.+..... .+..-.....+.+++.++.|+.++.||.++|+.+..+..
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 4678889999998876665332 222211222466788899999999999999999988875
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.78 E-value=0.0051 Score=44.74 Aligned_cols=183 Identities=9% Similarity=0.007 Sum_probs=94.3
Q ss_pred CceeEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCc--c---cCcE------------EEE
Q 043942 4 GDWASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGG--I---EDST------------VWM 66 (216)
Q Consensus 4 g~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~--~---~~~~------------v~i 66 (216)
.+.+..+... .....++|+++|+++++-..++.|..||.... ....+.....+ + .++. |..
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 3445555432 45789999999997777778899999998753 33333221111 1 2233 444
Q ss_pred EECCCcceeeeeec-cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-eEEeecccccc-cccceEEEeeeecCeE
Q 043942 67 WNADRGAYLNMFSG-HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-FHAIRRSSLEF-SLNYWMICTSLYDGVT 143 (216)
Q Consensus 67 ~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~v~ 143 (216)
+|..+++....... .......++..+++..+++-..++.|+++|...++. +..... .... ... ......+
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~-~~~~~~~~------~~~~~pn 172 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHP-MLARSNSE------SVFPAAN 172 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECG-GGSCSSTT------CCSCSEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECC-cccccccc------CCCCcCC
Confidence 45444443221111 112233444455555555555688999999876532 111111 0000 000 0001122
Q ss_pred EEEeCCCCcEEEEec-ccCeE----------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 144 CLSWPGTSKYLVTGC-VDGKV----------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~-~~~~i----------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.+ +|+++.++.+. ..+.| .........++++++|++.++....+.|.+++..
T Consensus 173 gi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 173 GL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred Cc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 23 45554433332 23333 1111235678889999887777677889999865
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.77 E-value=0.0054 Score=44.90 Aligned_cols=98 Identities=6% Similarity=0.036 Sum_probs=54.7
Q ss_pred CeeEEEEcCCCcEEEEe-cCCCeEEEEeCCCCc--eeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-
Q 043942 84 GLTCGDFTTDGKTICTG-SDNATLSIWNPKGGE--NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV- 159 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 159 (216)
....++++|+++.|..+ ...+.|.+|++.... ....+.. ... ...++++++|++.++...
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---------------~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---------------IPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---------------CSS-EEEEEECTTSCEEEEEEEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---------------CCC-CCCeEECCCCCEEEEecCc
Confidence 45679999999866554 567899999987532 1111110 111 455677777765544332
Q ss_pred ---------cCeE-------------Eee----eCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 160 ---------DGKV-------------DGH----IDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 160 ---------~~~i-------------~~~----~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.+.+ ... ...++.+++ .++++.++....+.|.++++..
T Consensus 250 ~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 1222 000 123555555 4566666665677888888754
No 267
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.77 E-value=0.0056 Score=44.92 Aligned_cols=189 Identities=10% Similarity=0.107 Sum_probs=110.5
Q ss_pred EEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCC-cceeeeeeccC---
Q 043942 20 LAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADR-GAYLNMFSGHG--- 82 (216)
Q Consensus 20 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~-~~~~~~~~~~~--- 82 (216)
.--+|..+.+|--. ...+.++|+++.+.++....++.-+ .+..|+-|++.. ..+.+.+..|.
T Consensus 72 AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~ 150 (365)
T 2xzh_A 72 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA 150 (365)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGT
T ss_pred eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcc
Confidence 34578777777665 6789999999999999988876544 888999999974 45666666553
Q ss_pred -CCeeEEEEcCCCcEEEEec-------CCCeEEEEeCCCCceeEEeecccccccccceEEEee--eecCeEEEEe-CCCC
Q 043942 83 -SGLTCGDFTTDGKTICTGS-------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS--LYDGVTCLSW-PGTS 151 (216)
Q Consensus 83 -~~v~~~~~~~~~~~l~t~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~-~~~~ 151 (216)
..|..-..+++.++++..+ -.|.+.+|..+.+. .+.+++....+.. ....+ +...+.+++. .+.|
T Consensus 151 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~---~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 151 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ---FKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEE---ECCTTCSSCEEEEEEEEEETTE
T ss_pred cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceeeeeeeeeEE---EecCCCCCCceEEEEEEecCCC
Confidence 4566777788889876544 24778889887443 3333331111000 00000 0111112111 1111
Q ss_pred cEEEE--eccc--Ce-------E------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942 152 KYLVT--GCVD--GK-------V------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 152 ~~l~~--~~~~--~~-------i------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
..|-. -+.+ +. + ..-..-..++..++....+..-+.-|.+++||++++.++..-...+-.+|
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 11110 0000 10 0 11123445667777777787888899999999999998875444333333
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.77 E-value=0.007 Score=45.98 Aligned_cols=176 Identities=7% Similarity=-0.045 Sum_probs=93.1
Q ss_pred cccceEEEEEccCCCEEEEE-cCCCcEEEEECCCC----ceEEEEeCCCC---cc----cCcEEE----------EEECC
Q 043942 13 HKDSFSSLAFSTDGQLLASG-GFHGLVQNRDTSSR----NLQCTVEGPRG---GI----EDSTVW----------MWNAD 70 (216)
Q Consensus 13 h~~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~----~~~~~~~~~~~---~~----~~~~v~----------i~d~~ 70 (216)
....+..++|++.+..|..+ ...+.|+.+++... .....+..... ++ ..+.|+ +.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567899999865555544 45678888888752 22222221111 11 234444 44444
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
.......+.........|+++|.+..|..+. ..+.|...++........... .-.....++++
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~---------------~l~~P~glavd 254 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------NIQWPNGITLD 254 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS---------------SCSCEEEEEEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC---------------CCCceEEEEEE
Confidence 3322222322334578899998665555443 246788888874333222221 22456778888
Q ss_pred CCCcEEEEec-ccCeE--------------Ee--eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceee
Q 043942 149 GTSKYLVTGC-VDGKV--------------DG--HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATK 204 (216)
Q Consensus 149 ~~~~~l~~~~-~~~~i--------------~~--~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~ 204 (216)
+++..|+.+. ..+.| .. .......+++. .+.++.+-...+.|..++..+++....
T Consensus 255 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~ 326 (400)
T 3p5b_L 255 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 326 (400)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence 7665555443 33344 10 11344566662 334455555678888888666655443
No 269
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.75 E-value=0.0025 Score=50.83 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=44.9
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
++.+..||+.+++.+.++... ..+....+...+..++.++.|+.++.+|.++++.+..+..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 368899999999887776532 2233322333466777899999999999999999888764
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.73 E-value=0.0077 Score=45.50 Aligned_cols=165 Identities=9% Similarity=-0.015 Sum_probs=89.2
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc----------------cCcEEEEEECCCcceeeeeecc
Q 043942 18 SSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI----------------EDSTVWMWNADRGAYLNMFSGH 81 (216)
Q Consensus 18 ~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~----------------~~~~v~i~d~~~~~~~~~~~~~ 81 (216)
.|.+..+. .+|+.+. ...|+..++...+....+.....+. ..+.|..+++........+...
T Consensus 80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCcccc-ceeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 34444442 3444333 3568888887665544443322221 3344555555443322222222
Q ss_pred CCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-c
Q 043942 82 GSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-V 159 (216)
Q Consensus 82 ~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 159 (216)
......+++.+. +++.++-...+.|.+.++........+.. .......++++|.+..|+... .
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~---------------~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ---------------SLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS---------------SCSCEEEEEEETTTTEEEEEECS
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC---------------CCCCCcEEEEEcCCCeEEEeccC
Confidence 234567888875 44555656678899988874433222221 224567778887555444333 2
Q ss_pred c-CeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccc
Q 043942 160 D-GKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEF 199 (216)
Q Consensus 160 ~-~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~ 199 (216)
. +.| .........++++|++..|..+ +..+.|..+++...
T Consensus 223 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 223 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 2 344 1112346899999876666544 45678999887643
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.67 E-value=0.0082 Score=43.99 Aligned_cols=174 Identities=9% Similarity=-0.074 Sum_probs=93.5
Q ss_pred ccceEEEEEccCCCEE-EEEcCCCcEEEEECCC----CceEEEEeCC---CCcc--------------cCcEEEEEECCC
Q 043942 14 KDSFSSLAFSTDGQLL-ASGGFHGLVQNRDTSS----RNLQCTVEGP---RGGI--------------EDSTVWMWNADR 71 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l-~s~~~d~~v~vwd~~~----~~~~~~~~~~---~~~~--------------~~~~v~i~d~~~ 71 (216)
...+..++|++.++.| .+-...+.|..+++.. ......+... ..++ ..+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 3456789999865544 4555568999999876 2222222211 1111 334455555543
Q ss_pred cceeeeeeccCCCeeEEEEcCCCcEEEEec-CC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCC
Q 043942 72 GAYLNMFSGHGSGLTCGDFTTDGKTICTGS-DN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPG 149 (216)
Q Consensus 72 ~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 149 (216)
......+.........++++|.+..+..+. .. +.|...++. +.....+... .-.....+++++
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~--------------~~~~P~gla~d~ 173 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE--------------NIQWPNGITLDL 173 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS--------------SCSCEEEEEEET
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC--------------CCCCceEEEEec
Confidence 222222222334678999998666554443 33 688888876 4433333210 224567788887
Q ss_pred CCcEEEEec-ccCeE------------Ee----eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 150 TSKYLVTGC-VDGKV------------DG----HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 150 ~~~~l~~~~-~~~~i------------~~----~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
++..|+.+. ..+.| .. .......+++. .+.++++-...+.|..++..+++...
T Consensus 174 ~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~ 243 (316)
T 1ijq_A 174 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVN 243 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred cCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence 655554433 33444 10 11345677774 35555556567889888876665433
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.62 E-value=0.00022 Score=58.68 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=64.2
Q ss_pred CeeEEEEc-CCCcEEEEecC-C----CeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 84 GLTCGDFT-TDGKTICTGSD-N----ATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 84 ~v~~~~~~-~~~~~l~t~~~-d----~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
.+...+|+ |||++|+.+.. + ..|+++|+.++ +.+... .......+.|+|||+.|+.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-----------------~~~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-----------------VSGTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-----------------EEEECSCCEECSSTTEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-----------------ccCceeeEEEecCCCEEEE
Confidence 57789999 99998885432 2 35999999988 532110 1111346789999877665
Q ss_pred ecccC-----eE----------------E-eeeCCEEEEEEecCCCeEEEEeC---CCcEEEEEcccc
Q 043942 157 GCVDG-----KV----------------D-GHIDAIQSLSVSAIRESLVSVSV---DGTARVFEIAEF 199 (216)
Q Consensus 157 ~~~~~-----~i----------------~-~~~~~i~~~~~~~~~~~l~s~~~---d~~v~vw~~~~~ 199 (216)
...+. .+ . ........+.|+|||++|+..+. ...|+++|+.++
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 55431 23 0 11234567899999998886553 346888888765
No 273
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.56 E-value=0.026 Score=46.82 Aligned_cols=171 Identities=13% Similarity=0.153 Sum_probs=103.8
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE----------------EEE-eCCCCcc----cCcEEEEEECCCcc
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ----------------CTV-EGPRGGI----EDSTVWMWNADRGA 73 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~----------------~~~-~~~~~~~----~~~~v~i~d~~~~~ 73 (216)
..|.++...++|.+ -.|+.++-|..|+..+.... ..+ ......+ .++-+..||..+++
T Consensus 310 ~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 310 RSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR 388 (795)
T ss_dssp SCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC
T ss_pred CcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc
Confidence 56999999998874 44556667888876543221 111 1111111 44568888877654
Q ss_pred eeeeeec--------cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEE
Q 043942 74 YLNMFSG--------HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCL 145 (216)
Q Consensus 74 ~~~~~~~--------~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (216)
....... ....|.++...++++.|..|+.++-+..+|..+++.......... .....|.++
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~-----------l~~~~v~~i 457 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ-----------LVNENVYAI 457 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC-----------CSCSCEEEE
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC-----------cCCCeeEEE
Confidence 4322111 235688999888888566677777799999887764332211000 034568888
Q ss_pred EeCCCCcEEEEecccCeE---------E--e--------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccc
Q 043942 146 SWPGTSKYLVTGCVDGKV---------D--G--------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFR 200 (216)
Q Consensus 146 ~~~~~~~~l~~~~~~~~i---------~--~--------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~ 200 (216)
...++|.+.+... +|.. . . ....|.++..+++|++.+... +-+..|+..+.+
T Consensus 458 ~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 458 LPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp EECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred EECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 8888887554433 5543 1 0 125688898988888666543 457888876544
No 274
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.55 E-value=0.012 Score=43.05 Aligned_cols=124 Identities=13% Similarity=0.021 Sum_probs=69.9
Q ss_pred cCcEEEEEECCC----cceeeeeeccCCCeeEEEEcCCC-cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEE
Q 043942 60 EDSTVWMWNADR----GAYLNMFSGHGSGLTCGDFTTDG-KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMI 134 (216)
Q Consensus 60 ~~~~v~i~d~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 134 (216)
.++.|..+++.. ......+...-.....+++++.+ +..++-...+.|.+.|+........+..
T Consensus 50 ~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~------------ 117 (316)
T 1ijq_A 50 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE------------ 117 (316)
T ss_dssp TTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC------------
T ss_pred CCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC------------
Confidence 356677777664 11112222222456789998744 4555556788999999874433222221
Q ss_pred EeeeecCeEEEEeCCCCcEEEEecc-c-CeE------------E--eeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcc
Q 043942 135 CTSLYDGVTCLSWPGTSKYLVTGCV-D-GKV------------D--GHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIA 197 (216)
Q Consensus 135 ~~~~~~~v~~~~~~~~~~~l~~~~~-~-~~i------------~--~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~ 197 (216)
.......++++|.+..++.+.. . +.| . ..-.....++++|++..|..+ +..+.|..+++.
T Consensus 118 ---~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 118 ---NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp ---TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ---CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 2234567777775444433322 2 344 0 112456899999877666554 456789999986
Q ss_pred c
Q 043942 198 E 198 (216)
Q Consensus 198 ~ 198 (216)
.
T Consensus 195 g 195 (316)
T 1ijq_A 195 G 195 (316)
T ss_dssp S
T ss_pred C
Confidence 4
No 275
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.53 E-value=0.018 Score=44.25 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=95.9
Q ss_pred ceEEEEEccC--CCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----cCcEEEEEECCC---cceeeeee------
Q 043942 16 SFSSLAFSTD--GQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----EDSTVWMWNADR---GAYLNMFS------ 79 (216)
Q Consensus 16 ~v~~~~~s~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----~~~~v~i~d~~~---~~~~~~~~------ 79 (216)
....++|+|+ +..|..+...+.|+.+|..+++..........+. .++.+++=|... ...+..+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 4678999984 4455555544899999998776655433221111 455566666421 11111111
Q ss_pred -----ccCCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 80 -----GHGSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 80 -----~~~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
........++++| ++.++++-..++.|+.+|..++.....+.... .......++|+|++++
T Consensus 220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-------------~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-------------TKGSNFHIVWHPTGDW 286 (433)
T ss_dssp CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-------------CCSSCEEEEECTTSSE
T ss_pred ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-------------CCCCcccEEEeCCCCE
Confidence 1123356788899 66666666678899999998776522221100 1112235788888874
Q ss_pred EEEe-cccCeEEe---------------------------------eeCCEEEEEE---------ecCCCeEEEEeCCCc
Q 043942 154 LVTG-CVDGKVDG---------------------------------HIDAIQSLSV---------SAIRESLVSVSVDGT 190 (216)
Q Consensus 154 l~~~-~~~~~i~~---------------------------------~~~~i~~~~~---------~~~~~~l~s~~~d~~ 190 (216)
|+.+ ...+.|.. .-.....+++ .++|++.++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 4443 33344410 0123566888 677777777666778
Q ss_pred EEEEEc
Q 043942 191 ARVFEI 196 (216)
Q Consensus 191 v~vw~~ 196 (216)
|+.++.
T Consensus 367 I~~~~~ 372 (433)
T 4hw6_A 367 VRVLTP 372 (433)
T ss_dssp EEEECT
T ss_pred EEEECC
Confidence 888874
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.51 E-value=0.0015 Score=53.31 Aligned_cols=175 Identities=9% Similarity=-0.041 Sum_probs=90.6
Q ss_pred cceEEEEEccCCCEEEEEc-CCCcEEEEECCC----CceEEEEe----CCCCcc-------------cCcEEEEEECCCc
Q 043942 15 DSFSSLAFSTDGQLLASGG-FHGLVQNRDTSS----RNLQCTVE----GPRGGI-------------EDSTVWMWNADRG 72 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~----~~~~~~~~----~~~~~~-------------~~~~v~i~d~~~~ 72 (216)
..+..++|++.+..|+.+. ..+.|+.+++.. ......+. .+..-. ..+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456889998666665554 557899998875 22111111 111100 3456666666544
Q ss_pred ceeeeeeccCCCeeEEEEcCCCcEEEEec-CC-CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 73 AYLNMFSGHGSGLTCGDFTTDGKTICTGS-DN-ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 73 ~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
.....+.........++++|.+..|+.+. .. +.|..+++... ....+... .-...+.|+|+|+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~--------------~l~~PnGlavd~~ 550 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE--------------NIQWPNGITLDLL 550 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCS--------------SCSSCCCEEECTT
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeC--------------CCCCccEEEEecc
Confidence 33222222234567889998665555443 22 67888777632 22222110 1233566778776
Q ss_pred CcEEE-EecccCeEE----------------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeec
Q 043942 151 SKYLV-TGCVDGKVD----------------GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKA 205 (216)
Q Consensus 151 ~~~l~-~~~~~~~i~----------------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~ 205 (216)
+..|+ +-...+.|. ........+++..+ .++++....+.|..++..+++....+
T Consensus 551 ~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 551 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp TCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred CCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 54443 333344440 00122334555443 34445555688999987766654433
No 277
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.50 E-value=0.019 Score=43.93 Aligned_cols=189 Identities=10% Similarity=0.100 Sum_probs=113.3
Q ss_pred EEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCC-cceeeeeeccC---
Q 043942 20 LAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADR-GAYLNMFSGHG--- 82 (216)
Q Consensus 20 ~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~-~~~~~~~~~~~--- 82 (216)
.--+|..+.+|-=. ...+.++|+++.+.++....++.-+ .+..|+-|++.. ..+.+.+..|.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~ 149 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLA 149 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGT
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcc
Confidence 44567777666554 6789999999999999998877654 889999999973 45666666553
Q ss_pred -CCeeEEEEcCCCcEEEEec-------CCCeEEEEeCCCCceeEEeecccccccccceEEEee--eecCeEEEEeC-CCC
Q 043942 83 -SGLTCGDFTTDGKTICTGS-------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS--LYDGVTCLSWP-GTS 151 (216)
Q Consensus 83 -~~v~~~~~~~~~~~l~t~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~~ 151 (216)
..|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.+....+.. ....+ +...+.+++.. +.|
T Consensus 150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~---~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQ---FKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEE---EECTTCSSEEEEEEEEECSTTC
T ss_pred cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEE---EecCCCCCCceEEEEEEecCCC
Confidence 4666777788999887543 24778889887543 3333331111000 00000 11122333322 122
Q ss_pred cEEEEe--ccc--Ce--E-----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942 152 KYLVTG--CVD--GK--V-----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 152 ~~l~~~--~~~--~~--i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
..|-.. +.. +. . ..-..-..++..++....+..-+.-|.+++||++++.++..-...+-.+|
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF 304 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence 211111 100 10 0 11123456777788777788888899999999999998875444444443
No 278
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.50 E-value=0.019 Score=46.01 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=69.4
Q ss_pred EEEccCCCE----EEEEcCCCcEEEEECCCCceEEEEeCCCC---------cc---------c-------CcEEEEEECC
Q 043942 20 LAFSTDGQL----LASGGFHGLVQNRDTSSRNLQCTVEGPRG---------GI---------E-------DSTVWMWNAD 70 (216)
Q Consensus 20 ~~~s~~~~~----l~s~~~d~~v~vwd~~~~~~~~~~~~~~~---------~~---------~-------~~~v~i~d~~ 70 (216)
++++|.+.. ++.++.|+.+..+|..+++.+-+...... +. . ++.|+-+|.+
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~ 190 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK 190 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECC
Confidence 455443333 78888899999999999998877654321 11 1 6899999999
Q ss_pred CcceeeeeeccCCC-------------------------------------e-eEEEEcCCCcEEEEecCC---------
Q 043942 71 RGAYLNMFSGHGSG-------------------------------------L-TCGDFTTDGKTICTGSDN--------- 103 (216)
Q Consensus 71 ~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~t~~~d--------- 103 (216)
+|+.+.++...... + ..+++.++...+..++.+
T Consensus 191 TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r 270 (599)
T 1w6s_A 191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (599)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred CCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence 99987665532111 0 135566777777776654
Q ss_pred -------CeEEEEeCCCCceeEEeec
Q 043942 104 -------ATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 104 -------~~i~~wd~~~~~~~~~~~~ 122 (216)
+.|..+|.++|+.+-.+..
T Consensus 271 ~gd~~y~~sv~Ald~~TG~~~W~~q~ 296 (599)
T 1w6s_A 271 PGDNKWTMTIFGRDADTGEAKFGYQK 296 (599)
T ss_dssp CSCCTTSSEEEEEETTTCCEEEEEES
T ss_pred CCCccccceEEEEeCCCCceeeEeec
Confidence 3688888888887766654
No 279
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.45 E-value=0.016 Score=42.06 Aligned_cols=155 Identities=10% Similarity=0.055 Sum_probs=84.1
Q ss_pred cceEEEEEccCCCEEEEEcCC--CcEEEEECCCCceEEEEeCCCCc------------c-----cCcEEEEEECCCcce-
Q 043942 15 DSFSSLAFSTDGQLLASGGFH--GLVQNRDTSSRNLQCTVEGPRGG------------I-----EDSTVWMWNADRGAY- 74 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~------------~-----~~~~v~i~d~~~~~~- 74 (216)
..+..++++++|+++++.... ..|..+|..+++........... . .++.|+++|..+++.
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~ 151 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS 151 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence 467889999999966655432 24667787777654433321110 0 356777777664321
Q ss_pred eeee-------e--ccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCC-Cce--eEEeecccccccccceEEEeeeecC
Q 043942 75 LNMF-------S--GHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKG-GEN--FHAIRRSSLEFSLNYWMICTSLYDG 141 (216)
Q Consensus 75 ~~~~-------~--~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (216)
+... . ..-.....+ +|+++.| ++-...+.|..+|+.. ++. ...+. ....
T Consensus 152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~----------------~~~~ 213 (306)
T 2p4o_A 152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV----------------EQTN 213 (306)
T ss_dssp EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE----------------ESCC
T ss_pred EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe----------------ccCC
Confidence 1100 0 111234455 7777655 4455678999999874 321 11111 1123
Q ss_pred eEEEEeCCCCcEEEEecccCeE---------Ee------eeCCEEEEEEe---cCCCeEEEEeC
Q 043942 142 VTCLSWPGTSKYLVTGCVDGKV---------DG------HIDAIQSLSVS---AIRESLVSVSV 187 (216)
Q Consensus 142 v~~~~~~~~~~~l~~~~~~~~i---------~~------~~~~i~~~~~~---~~~~~l~s~~~ 187 (216)
...++++++|+++++....+.| .. .....++++|. |+++.|+.++.
T Consensus 214 P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 214 IDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred CCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 3456666776655444333333 10 12457889998 78766655443
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.44 E-value=0.013 Score=41.54 Aligned_cols=105 Identities=10% Similarity=0.213 Sum_probs=67.3
Q ss_pred eeccCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 78 FSGHGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 78 ~~~~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
+.+-...+..++|+|++..| ++...++.|...|.. ++....++.. .......+++.+++.++++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--------------g~~D~EGIa~~~~g~~~vs 86 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--------------FVKDLETIEYIGDNQFVIS 86 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--------------SCSSEEEEEECSTTEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--------------CCCChHHeEEeCCCEEEEE
Confidence 44555679999999976655 557788999999998 8877776531 1234556666666655444
Q ss_pred ecccCeE-----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcc
Q 043942 157 GCVDGKV-----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIA 197 (216)
Q Consensus 157 ~~~~~~i-----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~ 197 (216)
.-.++.+ .........++|+|.++.|.++.+.....+|.+.
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 3233222 0122345899999999777776665555555554
No 281
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.44 E-value=0.037 Score=45.84 Aligned_cols=170 Identities=10% Similarity=0.053 Sum_probs=101.7
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEe---------------CCCCcc---cCcEEEEEECCCcceee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVE---------------GPRGGI---EDSTVWMWNADRGAYLN 76 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~---------------~~~~~~---~~~~v~i~d~~~~~~~~ 76 (216)
..|.++...++|+.|..|+.++-+..||..+++...... .....+ ..+-+.+||..+++...
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTT 485 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEE
Confidence 568999998888856666666779999988765332211 111111 22457788887664432
Q ss_pred eee------ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCC
Q 043942 77 MFS------GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGT 150 (216)
Q Consensus 77 ~~~------~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 150 (216)
... .....|.++...++++..+... +-+..||..+++. .+....... ......|.++..+++
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~--------~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVS--------NVTKLFTNCIYEASN 553 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSC--------GGGGSCEEEEEECTT
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCC--------CCCCCeeEEEEECCC
Confidence 211 1235688999998888666554 4588899877654 332100000 003456888888888
Q ss_pred CcEEEEecccCeE---------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 151 SKYLVTGCVDGKV---------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 151 ~~~l~~~~~~~~i---------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|.+.+... .|.. .. ....|.++..+++|++.+++ ++-+..|+..+.
T Consensus 554 g~lWigT~-~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~ 615 (795)
T 4a2l_A 554 GIIWVGTR-EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETE 615 (795)
T ss_dssp SCEEEEES-SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTT
T ss_pred CCEEEEeC-CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCC
Confidence 87554433 3544 10 12458888888888876655 345667776543
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.38 E-value=0.021 Score=41.85 Aligned_cols=171 Identities=9% Similarity=-0.044 Sum_probs=93.5
Q ss_pred ceEEEEEccCC-CEEEEEcCCCcEEEEECCCCceEE-EE-eC--CCCcc--------------cCcEEEEEECCCcceee
Q 043942 16 SFSSLAFSTDG-QLLASGGFHGLVQNRDTSSRNLQC-TV-EG--PRGGI--------------EDSTVWMWNADRGAYLN 76 (216)
Q Consensus 16 ~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~~~~~~-~~-~~--~~~~~--------------~~~~v~i~d~~~~~~~~ 76 (216)
.+..++|++.+ .++.+-...+.|..+++....... .+ .. ...++ ..+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 45688999854 445555567889999987763211 11 11 11111 33455555554322222
Q ss_pred eeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 77 MFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
.+.........++++|.+..|..+. ..+.|...++. |.....+... .-...+.++++|++..|
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~--------------~l~~Pnglavd~~~~~l 180 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINS--------------EIYWPNGLTLDYEEQKL 180 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECS--------------SCSCEEEEEEETTTTEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEEC--------------CCCCccEEEEeccCCEE
Confidence 2223334578899998655555444 35788888876 3333332210 22345778888755544
Q ss_pred EEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 155 VTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 155 ~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+.+ ...+.| .........+++.. +.++.+-...+.|..++..+++..
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 181 YWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 443 333444 11223456677743 344455555788988888766543
No 283
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.046 Score=45.19 Aligned_cols=171 Identities=12% Similarity=0.062 Sum_probs=99.9
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEE-------------EE-eCCCCcc----cCcEEEEEECCCcceee
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQC-------------TV-EGPRGGI----EDSTVWMWNADRGAYLN 76 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~-------------~~-~~~~~~~----~~~~v~i~d~~~~~~~~ 76 (216)
..|.++...++|++. .|+.++-+..||..++.... .+ ......+ .++-+..+|.++++...
T Consensus 363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp SCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEE
T ss_pred cceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEE
Confidence 468899888887744 45545568888876543211 11 1111111 34667888877664432
Q ss_pred eee--ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 77 MFS--GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 77 ~~~--~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
... .....|.++...+++++.+. +. +-+..+|..+++.......... . .....|.++...++|.+.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~---~-------~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNS---Q-------LLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEECTTTS---S-------CSCSCEEEEEECTTCCEE
T ss_pred eccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEecccCccc---c-------cccceeEEEEEcCCCCEE
Confidence 211 13457889988888875554 44 5688999887654432221100 0 023568888888888765
Q ss_pred EEecccCeE---------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 155 VTGCVDGKV---------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 155 ~~~~~~~~i---------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
+....+|.. .. ....|.++..+++|++.++.. +|.+..||..+.
T Consensus 510 igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 510 IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 544334543 10 124688888888888665443 665477776654
No 284
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.30 E-value=0.033 Score=42.29 Aligned_cols=156 Identities=11% Similarity=0.024 Sum_probs=86.1
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc------cCcEEEEEECCCcc--------------eeeeeeccCCCeeE
Q 043942 28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI------EDSTVWMWNADRGA--------------YLNMFSGHGSGLTC 87 (216)
Q Consensus 28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~v~i~d~~~~~--------------~~~~~~~~~~~v~~ 87 (216)
+|+.+. ...|+..++...+....+....... .++.|++-|...++ ....+.........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 344333 4577777777665544443322221 23444444443221 11112222345678
Q ss_pred EEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-c-cCeE-
Q 043942 88 GDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-V-DGKV- 163 (216)
Q Consensus 88 ~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-~~~i- 163 (216)
+++.+ .+++.++-...+.|.+.+++.......+.. .......++++|.+..|+... . .+.|
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~---------------~~~~P~~iavdp~~g~ly~td~~~~~~I~ 228 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIK 228 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC---------------SSCCEEEEEEETTTTEEEEEECSSSCCEE
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC---------------CCCCcceEEEecccCeEEEEeCCCCCEEE
Confidence 88887 455556666778899999875443333322 233467778877544444332 1 2333
Q ss_pred -------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEcccc
Q 043942 164 -------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEF 199 (216)
Q Consensus 164 -------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~ 199 (216)
...-.....+++++++..|..+ +..+.|..+|+...
T Consensus 229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 1112467899999877766655 44678999988653
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.30 E-value=0.056 Score=44.84 Aligned_cols=174 Identities=9% Similarity=-0.041 Sum_probs=89.0
Q ss_pred cccceEEEEEccCCC-EEEEEcCCCcEEEEECCCC----ceEEEEeCC---CCcc--------------cCcEEEEEECC
Q 043942 13 HKDSFSSLAFSTDGQ-LLASGGFHGLVQNRDTSSR----NLQCTVEGP---RGGI--------------EDSTVWMWNAD 70 (216)
Q Consensus 13 h~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~----~~~~~~~~~---~~~~--------------~~~~v~i~d~~ 70 (216)
....+..++|++... ++++-...+.|+.+++... .....+... ..++ ..+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345567899998544 4455555678888888753 222223211 1111 34455555555
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEec-C-CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeC
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGS-D-NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWP 148 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~-~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 148 (216)
.......+.........|+++|.+..|..+. . .+.|...++........+.. .-.....|+++
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~---------------~l~~P~GLavD 566 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE---------------NIQWPNGITLD 566 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS---------------SCSCEEEEEEE
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC---------------CCCCceEEEEe
Confidence 3332222222334578999999755554443 3 36788888874333222221 22456777777
Q ss_pred CCCcEEEEec-ccCeE--------------Ee--eeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 149 GTSKYLVTGC-VDGKV--------------DG--HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 149 ~~~~~l~~~~-~~~~i--------------~~--~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
+.+..|+.+. ..+.| .. .-....++++.. ++++++-...+.|...+..+++..
T Consensus 567 ~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 567 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 6555444432 33334 10 112344555532 233344445677777776665543
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.29 E-value=0.036 Score=42.49 Aligned_cols=105 Identities=6% Similarity=0.023 Sum_probs=57.4
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcC-CC----cEEEEECCCCceE--EEEe--CCCCcc--------------cCcE
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGF-HG----LVQNRDTSSRNLQ--CTVE--GPRGGI--------------EDST 63 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~-d~----~v~vwd~~~~~~~--~~~~--~~~~~~--------------~~~~ 63 (216)
+..+.........++|+++|++|+.+.. ++ .+.+.+. .+... ..+. .+...+ .++.
T Consensus 171 v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~ 249 (430)
T 3tc9_A 171 VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQ 249 (430)
T ss_dssp EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTE
T ss_pred EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCE
Confidence 3344334456789999999996665554 22 2333443 22221 2221 111111 3455
Q ss_pred EEEEECCCcceeeeeec-cCCCeeEEEEcCCCcE-EEEecCCCeEEEEeCC
Q 043942 64 VWMWNADRGAYLNMFSG-HGSGLTCGDFTTDGKT-ICTGSDNATLSIWNPK 112 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~t~~~d~~i~~wd~~ 112 (216)
|..++..++........ .......++|+|++++ +++-...+.|..++..
T Consensus 250 V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 250 VFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 66666654433121211 1234678999999995 4555577889998866
No 287
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.21 E-value=0.019 Score=39.66 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=79.1
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCC
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDG 94 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 94 (216)
..+.+++|+|+|.+.+. .+|.+.-.+..+.... .|- .+.+.+-.. +-. ....+.|.|+|
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~----------------~W~-~s~t~IG~~-Gw~-~F~a~~fD~~G 99 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND----------------NWM-GRAKKIGNG-GWN-QFQFLFFDPNG 99 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC----------------CHH-HHCEEEECS-CGG-GCSEEEECTTS
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc----------------ccc-ccccEeccc-ccc-cceEEEECCCC
Confidence 46789999999987666 5565544443221100 000 000111000 111 25789999999
Q ss_pred cEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeeeC------
Q 043942 95 KTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHID------ 168 (216)
Q Consensus 95 ~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~------ 168 (216)
.+.++ .||.|+-++--+.....-+.. ...+-...-..+..+.+.|+|.+.++. ++.+..+..
T Consensus 100 ~LYav--~dG~iyr~~pP~~~~~~Wl~~--------a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~ 167 (236)
T 1tl2_A 100 YLYAV--SKDKLYKASPPQSDTDNWIAR--------ATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQD 167 (236)
T ss_dssp CEEEE--ETTEEEEESCCCSTTCCHHHH--------SEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTC
T ss_pred CEEEe--CCCEEEEeCCCcCCCCceecc--------ccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCc
Confidence 98888 569888887532211100000 000000022567899999999988777 666621211
Q ss_pred ---------------CEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 169 ---------------AIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 169 ---------------~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
.-..+.|++++.+.+.. ++ ++|....
T Consensus 168 ~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~ 208 (236)
T 1tl2_A 168 NWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYP 208 (236)
T ss_dssp CHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESC
T ss_pred ccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCC
Confidence 23446688888876655 66 4454443
No 288
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.15 E-value=0.043 Score=40.75 Aligned_cols=121 Identities=10% Similarity=-0.014 Sum_probs=64.9
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCee
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLT 86 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~ 86 (216)
+..+-..-...+.|+|.|+|+++++--..|.|++++..+++... + -.+. ...........
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~-v--------------~~~~-----~v~~~g~~Gll 83 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE-L--------------GEVP-----GVSPSGEGGLL 83 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-E--------------EECT-----TCCCBTTBSEE
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee-e--------------cccC-----ceeecCCCCce
Confidence 34444445677899999999988877657777777654333210 0 0000 01112345678
Q ss_pred EEEEcCC----CcEEEEe--cCCCeEEEEeCCCCc--------eeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 87 CGDFTTD----GKTICTG--SDNATLSIWNPKGGE--------NFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 87 ~~~~~~~----~~~l~t~--~~d~~i~~wd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
.|+++|+ +.+.++- ..++.|.-|....+. ....+.... .........+.|.|+|.
T Consensus 84 Gia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p-----------~~~~H~g~~l~fgpDG~ 152 (347)
T 3das_A 84 GIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIP-----------KGVIHNGGRIAFGPDKM 152 (347)
T ss_dssp EEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEEC-----------CCSSCCCCCEEECTTSC
T ss_pred eeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCC-----------CCCCccCccccCCCCCC
Confidence 9999995 4333321 234556666655421 111111000 00122346789999998
Q ss_pred EEEEec
Q 043942 153 YLVTGC 158 (216)
Q Consensus 153 ~l~~~~ 158 (216)
++++.+
T Consensus 153 Lyvt~G 158 (347)
T 3das_A 153 LYAGTG 158 (347)
T ss_dssp EEEECB
T ss_pred EEEEEC
Confidence 777654
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.12 E-value=0.044 Score=40.26 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=58.8
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
....+..+.+.++++.++. +.+|.+++.+...++.-..+...... ....+..+.+.+++..++++. +
T Consensus 203 ~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~g~-~ 269 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRR-----------NSVGFLDLAYRTPNEVWLAGG-A 269 (327)
T ss_dssp SSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSS-----------CCSCEEEEEESSSSCEEEEES-T
T ss_pred CCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCccc-----------CCcceEEEEecCCCEEEEEeC-C
Confidence 3456788899988876654 45777777643323322212110000 223577888888777666654 4
Q ss_pred CeE----------E------eeeCCEEEEEEecCCCeEEEEeCCCcEEEEE
Q 043942 161 GKV----------D------GHIDAIQSLSVSAIRESLVSVSVDGTARVFE 195 (216)
Q Consensus 161 ~~i----------~------~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~ 195 (216)
+.+ . .....+..+.|.++++ +++++.+|.|.-++
T Consensus 270 g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 270 GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 433 1 1124678888876555 55666788776655
No 290
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.10 E-value=0.016 Score=44.10 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCCcEEEEecCCCeEEEEeCCCCceeEEeeccc-ccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE-------
Q 043942 92 TDGKTICTGSDNATLSIWNPKGGENFHAIRRSS-LEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV------- 163 (216)
Q Consensus 92 ~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i------- 163 (216)
.++..++.+ .++.||.-++......+.+..+. + ....+..+..+|+|++++..+..+..
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i------------~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHL------------VLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWG 96 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTC------------CCCTTCEEEECTTSSEEEEECSSEEEEEECCTT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCccc------------ccCceeEEEECCCCCEEEEecCCeEEEEEecCc
Confidence 345555544 34678877777544444444311 0 12367889999999999987765543
Q ss_pred ----E--------------------eeeCCEEEEEEecCC---CeEEEEeCCCcEEEEEccc
Q 043942 164 ----D--------------------GHIDAIQSLSVSAIR---ESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 164 ----~--------------------~~~~~i~~~~~~~~~---~~l~s~~~d~~v~vw~~~~ 198 (216)
. ....+|..+.|+|-+ ..|++-..|+.||+||+..
T Consensus 97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 0 014579999999954 5799999999999999986
No 291
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.02 E-value=0.011 Score=47.91 Aligned_cols=99 Identities=13% Similarity=0.215 Sum_probs=60.5
Q ss_pred EEEEcc-CCCEEEEEcCCC-----------cEEEEECCCCceEE--EEeCC----C--------Ccc------cCcEEEE
Q 043942 19 SLAFST-DGQLLASGGFHG-----------LVQNRDTSSRNLQC--TVEGP----R--------GGI------EDSTVWM 66 (216)
Q Consensus 19 ~~~~s~-~~~~l~s~~~d~-----------~v~vwd~~~~~~~~--~~~~~----~--------~~~------~~~~v~i 66 (216)
.+++.+ +++.++.|+.+. .+.+||..+++... .+..+ . ..+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 58899998875322 22111 1 001 3447888
Q ss_pred EECCCcceeeeeeccC-CCeeEEEEcCCCcEEEEec-CC-----CeEEEEeCCCCcee
Q 043942 67 WNADRGAYLNMFSGHG-SGLTCGDFTTDGKTICTGS-DN-----ATLSIWNPKGGENF 117 (216)
Q Consensus 67 ~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~t~~-~d-----~~i~~wd~~~~~~~ 117 (216)
||..+.+-...-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+++..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce
Confidence 8887654332211111 1223556667899999988 34 56999999877643
No 292
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.02 E-value=0.072 Score=40.89 Aligned_cols=104 Identities=7% Similarity=0.017 Sum_probs=54.8
Q ss_pred EeeccccceEEEEEccCCCEEEEEcCC---Cc-EEEEECCCCc----eEEEEeCCCCcc-------------cCcEEEEE
Q 043942 9 EILGHKDSFSSLAFSTDGQLLASGGFH---GL-VQNRDTSSRN----LQCTVEGPRGGI-------------EDSTVWMW 67 (216)
Q Consensus 9 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~-v~vwd~~~~~----~~~~~~~~~~~~-------------~~~~v~i~ 67 (216)
++.........++++++|+++++.... .. +...+...+. ....+..+.... .++.|+.+
T Consensus 176 ~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~ 255 (433)
T 4hw6_A 176 IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSY 255 (433)
T ss_dssp EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEE
T ss_pred EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEE
Confidence 343344568899999999955554321 11 2233322211 111111111111 45567777
Q ss_pred ECCCcceeeee-ec-cCCCeeEEEEcCCCcEE-EEecCCCeEEEEeCC
Q 043942 68 NADRGAYLNMF-SG-HGSGLTCGDFTTDGKTI-CTGSDNATLSIWNPK 112 (216)
Q Consensus 68 d~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l-~t~~~d~~i~~wd~~ 112 (216)
|..++.....+ .. ....-..++|+|+++.| ++-...+.|+.++..
T Consensus 256 d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 256 DPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred ECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 77655542222 11 11223469999999854 455567889998865
No 293
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.97 E-value=0.078 Score=42.96 Aligned_cols=156 Identities=11% Similarity=0.032 Sum_probs=85.9
Q ss_pred EEEEccCCCEEEEEc-CC-----CcEEEEECCCCceEEEE-----eCCCC---cc---------------------cCcE
Q 043942 19 SLAFSTDGQLLASGG-FH-----GLVQNRDTSSRNLQCTV-----EGPRG---GI---------------------EDST 63 (216)
Q Consensus 19 ~~~~s~~~~~l~s~~-~d-----~~v~vwd~~~~~~~~~~-----~~~~~---~~---------------------~~~~ 63 (216)
+++..++++.++.|+ .+ ..+.+||..+.+....- ..... .. ....
T Consensus 291 s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~ 370 (656)
T 1k3i_A 291 SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA 370 (656)
T ss_dssp EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSE
T ss_pred ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccc
Confidence 455667899999988 34 56999999887543320 00000 00 2346
Q ss_pred EEEEECCCcceeeeeeccC---------CCeeEEEEcC-CCcEEEEecCCC-----------eEEEEeCCCCceeEEeec
Q 043942 64 VWMWNADRGAYLNMFSGHG---------SGLTCGDFTT-DGKTICTGSDNA-----------TLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 64 v~i~d~~~~~~~~~~~~~~---------~~v~~~~~~~-~~~~l~t~~~d~-----------~i~~wd~~~~~~~~~~~~ 122 (216)
+..||..+.........+. ..-.++.|.. +++.++.|+.++ .+.+||..+.........
T Consensus 371 v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 450 (656)
T 1k3i_A 371 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN 450 (656)
T ss_dssp EEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT
T ss_pred eeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC
Confidence 7788887655332222111 1223444443 778888887543 677888876654433200
Q ss_pred ccccccccceEEEeeeecC-eEEEEeCCCCcEEEEecccC-----------eE----------------EeeeCCEEEEE
Q 043942 123 SSLEFSLNYWMICTSLYDG-VTCLSWPGTSKYLVTGCVDG-----------KV----------------DGHIDAIQSLS 174 (216)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~~~-----------~i----------------~~~~~~i~~~~ 174 (216)
.+ .... -.+.+..|++++++.|+.+. .+ ...........
T Consensus 451 -~m------------p~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ 517 (656)
T 1k3i_A 451 -GL------------YFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL 517 (656)
T ss_dssp -CC------------SSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEE
T ss_pred -CC------------CCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhh
Confidence 00 1111 12345567889888887541 11 00111223455
Q ss_pred EecCCCeEEEEeC
Q 043942 175 VSAIRESLVSVSV 187 (216)
Q Consensus 175 ~~~~~~~l~s~~~ 187 (216)
+.|+++.++.|+.
T Consensus 518 ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 518 LLPDGRVFNGGGG 530 (656)
T ss_dssp ECTTSCEEEEECC
T ss_pred cCCCcEEEecCCC
Confidence 6789999999885
No 294
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.82 E-value=0.084 Score=38.68 Aligned_cols=124 Identities=10% Similarity=-0.029 Sum_probs=68.9
Q ss_pred cCcEEEEEECCCccee-eeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEee
Q 043942 60 EDSTVWMWNADRGAYL-NMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTS 137 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (216)
..+.|..+++..+... ..+...-.....+++.+. ++++++-...+.|.++++........+..
T Consensus 55 ~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--------------- 119 (318)
T 3sov_A 55 SEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ--------------- 119 (318)
T ss_dssp TTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS---------------
T ss_pred CCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC---------------
Confidence 3455666666544221 112222234678899874 45556656778899999874332222222
Q ss_pred eecCeEEEEeCCCCcEEEEec--ccCeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccc
Q 043942 138 LYDGVTCLSWPGTSKYLVTGC--VDGKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAE 198 (216)
Q Consensus 138 ~~~~v~~~~~~~~~~~l~~~~--~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~ 198 (216)
.......++++|.+..|+.+. ..+.| ...-.....++++|++..|..+ +..+.|..+++..
T Consensus 120 ~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 120 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 223456666666433333322 12333 1112356899999976665544 4568899999864
No 295
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.18 Score=41.66 Aligned_cols=168 Identities=11% Similarity=0.105 Sum_probs=96.5
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEE------------E-eCCCCcc---cCcEEEEEECCCcceeee
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCT------------V-EGPRGGI---EDSTVWMWNADRGAYLNM 77 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~------------~-~~~~~~~---~~~~v~i~d~~~~~~~~~ 77 (216)
...|.++...++|++.+ |+.++-+..+|..+++.... + ......+ ..+-+..||..+++....
T Consensus 406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~ 484 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHH 484 (781)
T ss_dssp CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEE
T ss_pred CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEec
Confidence 35688898888887555 55556688888766543221 1 1111111 235677888776554332
Q ss_pred eecc-----CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 78 FSGH-----GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 78 ~~~~-----~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
.... ...|.++...++|++.+.. .++-+..+|..+++.. .+..... .....|.++...++|.
T Consensus 485 ~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~~~~~~~~-~~~~~~~-----------l~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 485 YDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGVGIYTPDMQLVR-KFNQYEG-----------FCSNTINQIYRSSKGQ 551 (781)
T ss_dssp ECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCEEEECTTCCEEE-EECTTTT-----------CSCSCEEEEEECTTSC
T ss_pred ccCcccccccceeEEEEEcCCCCEEEEE-cCCCEEEEeCCCCeEE-EccCCCC-----------CCCCeeEEEEECCCCC
Confidence 2211 3578899999888766544 4334777888765433 3321100 0345688888888887
Q ss_pred EEEEecccCe-E---------Ee-------eeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 153 YLVTGCVDGK-V---------DG-------HIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 153 ~l~~~~~~~~-i---------~~-------~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+.++.. +|. . .. ....|.++..+++|++.+++ .+| |..++..+
T Consensus 552 lWi~T~-~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~ 611 (781)
T 3v9f_A 552 MWLATG-EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSK 611 (781)
T ss_dssp EEEEET-TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTT
T ss_pred EEEEEC-CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCC
Confidence 554433 666 3 00 11356788888888765544 344 66666554
No 296
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.018 Score=42.56 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=66.0
Q ss_pred CEEEEEcCCCcEEEEECCCCceEEEEeCC--CCc-------------------ccCcEEEEEECCCcceeeeeecc----
Q 043942 27 QLLASGGFHGLVQNRDTSSRNLQCTVEGP--RGG-------------------IEDSTVWMWNADRGAYLNMFSGH---- 81 (216)
Q Consensus 27 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~-------------------~~~~~v~i~d~~~~~~~~~~~~~---- 81 (216)
..++.++.||.|.-.|..+|+..-+++.. ... ..||.++.++..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888889999999999999888877654 110 15788888888777544333211
Q ss_pred CCCeeE---EEE-c----CCCcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942 82 GSGLTC---GDF-T----TDGKTICTGSDNATLSIWNPKGGENFHAIRRS 123 (216)
Q Consensus 82 ~~~v~~---~~~-~----~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 123 (216)
..++.. ... . ..+..+.+|+.++.+...|+++|+.+..+...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111111 000 0 14568889999999999999999999988753
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.71 E-value=0.011 Score=48.24 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=56.9
Q ss_pred CeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-c-
Q 043942 84 GLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-D- 160 (216)
Q Consensus 84 ~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~- 160 (216)
....|++.+. ++++++-...+.|.++++........+.. .......++++|.+.+|+.+.. .
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~---------------~~~~P~giavDp~~g~ly~td~~~~ 518 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------------QGSKPRAIVVDPVHGFMYWTDWGTP 518 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC---------------SSCCCCCEECCSSSSCCEECCCSSS
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC---------------CCCCcceEEEccCCCcEEEcccCCC
Confidence 3457788754 44555555678899999875443333221 1233456677775444333321 1
Q ss_pred CeE--------------EeeeCCEEEEEEecCCCeEE-EEeCCCcEEEEEccc
Q 043942 161 GKV--------------DGHIDAIQSLSVSAIRESLV-SVSVDGTARVFEIAE 198 (216)
Q Consensus 161 ~~i--------------~~~~~~i~~~~~~~~~~~l~-s~~~d~~v~vw~~~~ 198 (216)
+.| .........++|+|++..|+ +-+..+.|.++++..
T Consensus 519 ~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 519 AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 333 01123456899998765554 445567899998864
No 298
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.15 Score=39.87 Aligned_cols=28 Identities=4% Similarity=-0.160 Sum_probs=20.4
Q ss_pred EEEEEEecCCCeE-EEEeCCCcEEEEEcc
Q 043942 170 IQSLSVSAIRESL-VSVSVDGTARVFEIA 197 (216)
Q Consensus 170 i~~~~~~~~~~~l-~s~~~d~~v~vw~~~ 197 (216)
...++|+|+|++| ++-+....|+.++..
T Consensus 312 p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 4689999999954 444556788886654
No 299
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.66 E-value=0.042 Score=48.24 Aligned_cols=188 Identities=10% Similarity=0.119 Sum_probs=105.5
Q ss_pred EccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-------------cCcEEEEEECCC-cceeeeeecc----CC
Q 043942 22 FSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-------------EDSTVWMWNADR-GAYLNMFSGH----GS 83 (216)
Q Consensus 22 ~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~v~i~d~~~-~~~~~~~~~~----~~ 83 (216)
-+|..+.+|--. ..++.|+|+++...++....+..-+ .+..|+-|++.. ..+...+..| ..
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccC
Confidence 456666666544 6789999999888777777655533 888999999973 3555555555 34
Q ss_pred CeeEEEEcCCCcEEEEec-------CCCeEEEEeCCCCceeEEeecccccccccceEEE-eeeecCeEEEEeC-CCCcEE
Q 043942 84 GLTCGDFTTDGKTICTGS-------DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMIC-TSLYDGVTCLSWP-GTSKYL 154 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~-~~~~~l 154 (216)
.|..-..+++.++++..+ -.|.+.+|..+.+.. +.+.+....+.. .... ......+.+.+.. ++|..|
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~--~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQ--FKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhhe--eccCCCCCCceEEEEEEecCCCceE
Confidence 677777788888877543 357788888774432 222221100000 0000 0011222232221 222211
Q ss_pred EEe--cc----cCeE-----------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEE
Q 043942 155 VTG--CV----DGKV-----------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLF 213 (216)
Q Consensus 155 ~~~--~~----~~~i-----------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~ 213 (216)
-.. +. .+.. ..-..-...+..++.-..+..-+.-|.++++|+.++..+..-...+-.+|
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF 304 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 304 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceE
Confidence 111 00 0111 11123345666677666777778889999999999988765444444444
No 300
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.62 E-value=0.053 Score=37.51 Aligned_cols=91 Identities=10% Similarity=-0.034 Sum_probs=59.6
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCcee------EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENF------HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
..+..++|+|++.+.++ .++.++-.+..+.... ..+-. . .-..-.++.|.|+|.+.++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~-------------~-Gw~~F~a~~fD~~G~LYav 104 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN-------------G-GWNQFQFLFFDPNGYLYAV 104 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC-------------S-CGGGCSEEEECTTSCEEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc-------------c-ccccceEEEECCCCCEEEe
Confidence 36789999999987776 6777777776542211 11100 0 1112478889999998887
Q ss_pred ecccCeEEee------------------e---CCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 157 GCVDGKVDGH------------------I---DAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 157 ~~~~~~i~~~------------------~---~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
.||.+..+ . ..+..+.++|+|.+.+.. |+.++-
T Consensus 105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp --ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred --CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 55888111 1 467999999999977766 777543
No 301
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.60 E-value=0.25 Score=41.08 Aligned_cols=103 Identities=12% Similarity=-0.022 Sum_probs=62.5
Q ss_pred CCeeEEEEcCCCc-EEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec-cc
Q 043942 83 SGLTCGDFTTDGK-TICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC-VD 160 (216)
Q Consensus 83 ~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~ 160 (216)
.....|++.+.++ ++++-...+.|.+.++........+.. .......|+++|...+|+... .+
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~---------------~l~~P~gIaVDp~~g~LYwtD~g~ 535 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDWGT 535 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC---------------TTCCEEEEEEETTTTEEEEEECSS
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC---------------CCCCcceEEEecCCCCEEEecCCC
Confidence 4567899987664 555556778999999884433332221 223467777777644443332 22
Q ss_pred -CeE--------------EeeeCCEEEEEEecCCCeEEEE-eCCCcEEEEEccccc
Q 043942 161 -GKV--------------DGHIDAIQSLSVSAIRESLVSV-SVDGTARVFEIAEFR 200 (216)
Q Consensus 161 -~~i--------------~~~~~~i~~~~~~~~~~~l~s~-~~d~~v~vw~~~~~~ 200 (216)
+.| ...-.....|++++.+..|+.+ ...+.|...++....
T Consensus 536 ~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 334 1122467899999876666555 445778888876533
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.45 E-value=0.27 Score=39.73 Aligned_cols=172 Identities=8% Similarity=-0.074 Sum_probs=94.5
Q ss_pred cceEEEEEccCCCEEE-EEcCCCcEEEEECCCCceEEEEeCC---CCcc--------------cCcEEEEEECCCcceee
Q 043942 15 DSFSSLAFSTDGQLLA-SGGFHGLVQNRDTSSRNLQCTVEGP---RGGI--------------EDSTVWMWNADRGAYLN 76 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~---~~~~--------------~~~~v~i~d~~~~~~~~ 76 (216)
..+..++|++.+..|. +-..++.|+.+++........+... ..++ ..+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 3567899998655554 5556788999998765444444322 1111 33445555554322211
Q ss_pred eeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 77 MFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
.+...-.....++++|....|..+. ..+.|...++.... ...+.. .-.....+++++++..|
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~---------------~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP---------------NVGRANGLTIDYAKRRL 180 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC---------------SCSSEEEEEEETTTTEE
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC---------------CCCCcceEEEccccCEE
Confidence 1222334578999998554554443 35678888876433 332222 23456777887765554
Q ss_pred EEec-ccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 155 VTGC-VDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 155 ~~~~-~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
+.+. ..+.| ........++++.. +..+++-...+.|...|..+++...
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred EEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 4443 23333 12223445677754 4444455457888888876665443
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.38 E-value=0.29 Score=39.44 Aligned_cols=173 Identities=9% Similarity=-0.066 Sum_probs=86.9
Q ss_pred cceEEEEEccCCCEEEEE-cCCCcEEEEECCCCce-EEEEeCCCC---cc--------------cCcEEEEEECCCccee
Q 043942 15 DSFSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNL-QCTVEGPRG---GI--------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~-~~~~~~~~~---~~--------------~~~~v~i~d~~~~~~~ 75 (216)
..+..++|++.+..|..+ ...+.|..+++..... ...+..... ++ ..+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 356789999866655544 4467888888876532 222222111 11 3455555555533222
Q ss_pred eeeeccCCCeeEEEEcCCCcEEEEec--CCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcE
Q 043942 76 NMFSGHGSGLTCGDFTTDGKTICTGS--DNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKY 153 (216)
Q Consensus 76 ~~~~~~~~~v~~~~~~~~~~~l~t~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (216)
..+...-.....|+++|.+..|..+. ..+.|...++. |.....+... .-.....+++++++..
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~--------------~~~~P~Glald~~~~~ 184 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINS--------------EIYWPNGLTLDYEEQK 184 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECS--------------SCSSEEEEEEETTTTE
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeC--------------CCCCCcEEEEEccCCE
Confidence 22222334567899988655554443 24567777766 3333322210 2344677888876554
Q ss_pred EEEe-cccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccccccee
Q 043942 154 LVTG-CVDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 154 l~~~-~~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
|+.+ ...+.| ........++++.++ ..+++-...+.|...|..+++...
T Consensus 185 LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 185 LYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred EEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 4443 333334 111122245566444 333444456788888887765443
No 304
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.38 E-value=0.2 Score=37.40 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=83.5
Q ss_pred ceEEEEEccCCCEEEEEc------------CCCcEEEEECCCC--ceE-EEEeCC-CC-------cc-------------
Q 043942 16 SFSSLAFSTDGQLLASGG------------FHGLVQNRDTSSR--NLQ-CTVEGP-RG-------GI------------- 59 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~------------~d~~v~vwd~~~~--~~~-~~~~~~-~~-------~~------------- 59 (216)
...++...|+|..+++++ .+|.|.++|..+. +.. ..+.+. .. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 455778888886666652 6899999998742 221 122221 00 00
Q ss_pred ------cCcEEEEEECCCc-c---eeeeeecc-CCCeeEEEEcCCCcEEEEecC-----------------CCeEEEEeC
Q 043942 60 ------EDSTVWMWNADRG-A---YLNMFSGH-GSGLTCGDFTTDGKTICTGSD-----------------NATLSIWNP 111 (216)
Q Consensus 60 ------~~~~v~i~d~~~~-~---~~~~~~~~-~~~v~~~~~~~~~~~l~t~~~-----------------d~~i~~wd~ 111 (216)
.+.++.+|++... . .+..+.+. -...+.+++.++|++.++... .+.+..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 1333444444321 1 12223222 235788999999988777541 234444543
Q ss_pred CCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-cCeE----------------EeeeCCEEEEE
Q 043942 112 KGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-DGKV----------------DGHIDAIQSLS 174 (216)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~~i----------------~~~~~~i~~~~ 174 (216)
++ ...+.. .-...+.++|+||++.++.+.. .+.+ .......-.++
T Consensus 211 --~~-~~~~~~---------------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~ 272 (355)
T 3sre_A 211 --ND-VRVVAE---------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNIS 272 (355)
T ss_dssp --TC-CEEEEE---------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEE
T ss_pred --Ce-EEEeec---------------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEE
Confidence 22 121211 3456789999999987776543 4444 00123446677
Q ss_pred Eec-CCCeEEEEeCC
Q 043942 175 VSA-IRESLVSVSVD 188 (216)
Q Consensus 175 ~~~-~~~~l~s~~~d 188 (216)
+++ +|++.+++..+
T Consensus 273 vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 273 VDPVTGDLWVGCHPN 287 (355)
T ss_dssp ECTTTCCEEEEEESC
T ss_pred EeCCCCcEEEEecCC
Confidence 777 47776655433
No 305
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.32 E-value=0.26 Score=38.13 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=25.7
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN 116 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 116 (216)
-.....|+|.|+|+++++-...+.|++++..+++.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE
Confidence 34578999999999777755445788888765543
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.30 E-value=0.16 Score=37.40 Aligned_cols=93 Identities=11% Similarity=0.050 Sum_probs=59.4
Q ss_pred CcEEEEEECC---Ccceeeeee--c-----------cCCCeeEEEEcCCCcEEEEecCC-CeEEEEeCCCCceeEEeecc
Q 043942 61 DSTVWMWNAD---RGAYLNMFS--G-----------HGSGLTCGDFTTDGKTICTGSDN-ATLSIWNPKGGENFHAIRRS 123 (216)
Q Consensus 61 ~~~v~i~d~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~t~~~d-~~i~~wd~~~~~~~~~~~~~ 123 (216)
+..|..||+. +++.+.... . .......++..++|+..++++.- +.|...+.. ++.+..+...
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEEeeeeec
Confidence 4556666766 555543332 1 11247899999999999998888 888888877 3333333210
Q ss_pred cccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 124 SLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.. + .......+.++++|+|..|++....|.+
T Consensus 178 ~~-~--------~~~~~G~nGIv~~pdg~~Liv~~~~g~L 208 (334)
T 2p9w_A 178 SG-N--------GGQRPGYSGITFDPHSNKLIAFGGPRAL 208 (334)
T ss_dssp CC-C--------SSSCCSCSEEEEETTTTEEEEESSSSSE
T ss_pred CC-C--------cccccCcceEEEeCCCCEEEEEcCCCeE
Confidence 00 0 0022346789999999988887667776
No 307
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.03 E-value=0.37 Score=37.25 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=25.6
Q ss_pred eEEeeccccceEEEEEccCCCEEEEEcCCCcEEEEECCC
Q 043942 7 ASEILGHKDSFSSLAFSTDGQLLASGGFHGLVQNRDTSS 45 (216)
Q Consensus 7 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 45 (216)
+..+-..-...+.|+|.|+|+++++-...+.|++++..+
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 334433345678999999999887765444677666543
No 308
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.77 E-value=0.4 Score=35.64 Aligned_cols=110 Identities=13% Similarity=-0.002 Sum_probs=58.4
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
-.....++|.|+|+++++ ..++.|++++. +++ ..+ -++. ...........|+++|+
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~--~~~--------------~~~~------v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK--KLV--------------ASFD------VANVGEAGLLGLALHPE 83 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE--EEE--------------EECC------CCCSTTCSEEEEEECTT
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc--eEe--------------eccc------eeecCCCceeeEEeCCC
Confidence 456789999999985555 44577777752 222 111 0110 01112345789999997
Q ss_pred ---CcEEEEecC----C----CeEEEEeCCCCc--e--eEE-eecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 94 ---GKTICTGSD----N----ATLSIWNPKGGE--N--FHA-IRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 94 ---~~~l~t~~~----d----~~i~~wd~~~~~--~--~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
+..|..+.. + ..|..|+..... . ... +.. ...........++|.|+|.++++.
T Consensus 84 f~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~-----------~~~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 84 FPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDG-----------IPGAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp TTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEE-----------EECCSSCCCCCEEECTTSCEEEEC
T ss_pred CCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEc-----------CCCCCCcCCceEEECCCCcEEEEE
Confidence 444444332 3 567777766441 1 011 110 000011234678999999877764
Q ss_pred c
Q 043942 158 C 158 (216)
Q Consensus 158 ~ 158 (216)
+
T Consensus 153 G 153 (354)
T 3a9g_A 153 G 153 (354)
T ss_dssp C
T ss_pred C
Confidence 3
No 309
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.74 E-value=0.62 Score=37.57 Aligned_cols=124 Identities=6% Similarity=-0.099 Sum_probs=69.2
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCC-CcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeee
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD-GKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLY 139 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (216)
.+.|+.+++........+...-.....+++.+. +++.++-+..+.|.+.++.... ...+... .-
T Consensus 370 ~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~--------------~l 434 (619)
T 3s94_A 370 VRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISE--------------DL 434 (619)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECT--------------TC
T ss_pred CCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEEC--------------CC
Confidence 344555555433222222222345678899864 4455565677889999887443 3333211 23
Q ss_pred cCeEEEEeCCC-CcEEEEec-ccCeE--------------EeeeCCEEEEEEecCCCeEEEEe-CCCcEEEEEcccc
Q 043942 140 DGVTCLSWPGT-SKYLVTGC-VDGKV--------------DGHIDAIQSLSVSAIRESLVSVS-VDGTARVFEIAEF 199 (216)
Q Consensus 140 ~~v~~~~~~~~-~~~l~~~~-~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~-~d~~v~vw~~~~~ 199 (216)
.....++++|. |.++++-. ....| ...-.....+++++++..|..+. ..+.|...++...
T Consensus 435 ~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 435 EEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp CSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 45677777775 44434321 12333 11234678899998766666554 4567888887543
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.73 E-value=0.42 Score=35.51 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=59.5
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 14 KDSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 14 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
-.....++|.|+|+++++ ..++.|++++ +++. .. +-++. ...........++++|+
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~--------------~~~~~------v~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-ST--------------YAELS------VYHRGESGLLGLALHPR 85 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EE--------------EEECC------CCCSTTCSEEEEEECTT
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cE--------------eecce------EeecCCCCceeEEECCC
Confidence 345679999999986665 4457777777 3321 00 00111 11112345789999998
Q ss_pred ---CcEEEEecC-C-----CeEEEEeCCCCcee---EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec
Q 043942 94 ---GKTICTGSD-N-----ATLSIWNPKGGENF---HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC 158 (216)
Q Consensus 94 ---~~~l~t~~~-d-----~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 158 (216)
+..|..+.. . +.|..++...+... ..+...... .........++|.|+|.++++.+
T Consensus 86 f~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~---------~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 86 FPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPAR---------PHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCC---------TTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCC---------CCCCcCCceEEECCCCCEEEEEC
Confidence 444444332 2 67888887643211 111100000 00112336889999997666643
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.69 E-value=0.37 Score=34.59 Aligned_cols=92 Identities=11% Similarity=0.165 Sum_probs=49.7
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCc---eEEEEeCCCCcc---------------------cCcEEEEEECCCccee
Q 043942 25 DGQLLASGGFH-----GLVQNRDTSSRN---LQCTVEGPRGGI---------------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 25 ~~~~l~s~~~d-----~~v~vwd~~~~~---~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~ 75 (216)
+++.++.|+.+ ..+.+||..+.+ ....-..+.... ....+.+||+.+.+-.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~ 141 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWS 141 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEE
Confidence 56677777754 468899988776 333211111110 2346777887765432
Q ss_pred e--eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCceeE
Q 043942 76 N--MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENFH 118 (216)
Q Consensus 76 ~--~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~~ 118 (216)
. .+......-..+.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 142 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 142 MLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp EEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 2 22111111122222 67777777754 458889988765443
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.67 E-value=0.98 Score=39.35 Aligned_cols=130 Identities=8% Similarity=0.058 Sum_probs=69.6
Q ss_pred cCcEEEEEECCCcceeeee-eccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccc------cc-cccc
Q 043942 60 EDSTVWMWNADRGAYLNMF-SGHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSL------EF-SLNY 131 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~------~~-~~~~ 131 (216)
..|.|++|++..++..... ....+++++++-- +|++++.. .+++++|++...+.+. ...... .. ....
T Consensus 862 ~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 862 KQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGD 937 (1158)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETT
T ss_pred CceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEE-EEeeccccEEEEEEeccCC
Confidence 5688999988643322111 1245778887643 45544433 4789999998665433 111000 00 0011
Q ss_pred eEEEeeeecCeEEEEeCCCCcEEEEecccCeEEeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 132 WMICTSLYDGVTCLSWPGTSKYLVTGCVDGKVDGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 132 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+.+...-...+.-+.|.++.+.|..-+.| ....+++++.+-.++ .++.+..+|++.+.....
T Consensus 938 ~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D----~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 938 FILVGDLMRSVLLLAYKPMEGNFEEIARD----FNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEESSBCEEEEEEETTTTEEEEEEEC----CSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEEEEEhhheEEEEEEEcCCCeEEEEEee----cccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 22222233344445554443333322222 244578888886554 566688899999987654
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.49 E-value=0.42 Score=34.32 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=47.0
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceee--
Q 043942 25 DGQLLASGGFH-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLN-- 76 (216)
Q Consensus 25 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~-- 76 (216)
++..++.|+.+ ..+.+||..+.+....-..+.... .-..+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 55677777754 358889988765433222111111 11356677776553222
Q ss_pred eeeccCCCeeEEEEcCCCcEEEEecCC-------CeEEEEeCCCCceeE
Q 043942 77 MFSGHGSGLTCGDFTTDGKTICTGSDN-------ATLSIWNPKGGENFH 118 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-------~~i~~wd~~~~~~~~ 118 (216)
.+.........+.+ +++.++.|+.+ ..+.+||+.+.+-..
T Consensus 141 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 141 PMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 12111111122222 56677777642 358889988765443
No 314
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.43 E-value=0.55 Score=34.88 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=21.3
Q ss_pred ccceEEEEEccCCC-EEEEEcCCCcEEEEEC
Q 043942 14 KDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT 43 (216)
Q Consensus 14 ~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~ 43 (216)
-.....|+|.|+|+ ++++ ...|.|++++.
T Consensus 17 l~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~ 46 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLIT-LRGGELRHWQA 46 (353)
T ss_dssp ESSEEEEEECSTTCCEEEE-ETTTEEEEEET
T ss_pred CCCcEEEEEcCCCCEEEEE-eCCceEEEEeC
Confidence 44668999999998 6655 45677777763
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.21 E-value=0.65 Score=34.48 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=27.6
Q ss_pred CCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce
Q 043942 82 GSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN 116 (216)
Q Consensus 82 ~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~ 116 (216)
-.....|+|.|+|+++++--..|.|++++..+++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 45578999999999777765589999998765553
No 316
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.14 E-value=0.7 Score=34.37 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=73.4
Q ss_pred cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC----Cc---EEEEec-C--CCeEEEEeCC--CCceeEEeecc--cc
Q 043942 60 EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD----GK---TICTGS-D--NATLSIWNPK--GGENFHAIRRS--SL 125 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~t~~-~--d~~i~~wd~~--~~~~~~~~~~~--~~ 125 (216)
..+-+.+||+ +|+.++.+.. +.++.+..-|+ ++ ++++.. . +++|.+|++. ++ .+..+... +.
T Consensus 48 k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~i~~~~~pv 123 (355)
T 3amr_A 48 KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQSMTDPDHPI 123 (355)
T ss_dssp TTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEECSCTTSCE
T ss_pred CCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceeeccccccCc
Confidence 4578999999 7888888753 56777777663 22 223333 3 5889999774 33 34444211 00
Q ss_pred cccccceEEEeeeecCeEEEEe--CCC-Cc-EEEEecccCeE--------------------EeeeCCEEEEEEecCCCe
Q 043942 126 EFSLNYWMICTSLYDGVTCLSW--PGT-SK-YLVTGCVDGKV--------------------DGHIDAIQSLSVSAIRES 181 (216)
Q Consensus 126 ~~~~~~~~~~~~~~~~v~~~~~--~~~-~~-~l~~~~~~~~i--------------------~~~~~~i~~~~~~~~~~~ 181 (216)
.. ....+..+|+ +|. +. ++++...+|.+ ......+..+..++....
T Consensus 124 ~t----------~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 124 AT----------AINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EC----------CCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred CC----------CCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 00 1133444555 553 32 45555555554 223457788889888888
Q ss_pred EEEEeCCCcEEEEEcc
Q 043942 182 LVSVSVDGTARVFEIA 197 (216)
Q Consensus 182 l~s~~~d~~v~vw~~~ 197 (216)
|+.+-++.-|..++.+
T Consensus 194 Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEEEETTTEEEEEECS
T ss_pred EEEecccceEEEEeCC
Confidence 9999888666555543
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.02 E-value=0.77 Score=34.24 Aligned_cols=125 Identities=13% Similarity=0.111 Sum_probs=72.7
Q ss_pred cCcEEEEEECCCc--ce-eeeeec-----cCCCeeEEEEcC--CCc--EEEEecC--CCeEEEEeCCCCcee----EEee
Q 043942 60 EDSTVWMWNADRG--AY-LNMFSG-----HGSGLTCGDFTT--DGK--TICTGSD--NATLSIWNPKGGENF----HAIR 121 (216)
Q Consensus 60 ~~~~v~i~d~~~~--~~-~~~~~~-----~~~~v~~~~~~~--~~~--~l~t~~~--d~~i~~wd~~~~~~~----~~~~ 121 (216)
.+|.|.++|+.+. +. ...+.+ .......+.+.+ ++. ++++-.. +..+.+|++...... ..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998742 21 112222 223567777755 343 3344333 567888777653221 1222
Q ss_pred cccccccccceEEEeeeecCeEEEEeCCCCcEEEEecc-----------------cCeE-----------EeeeCCEEEE
Q 043942 122 RSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCV-----------------DGKV-----------DGHIDAIQSL 173 (216)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------------~~~i-----------~~~~~~i~~~ 173 (216)
.. .-...+.+.+.++|++.++... .|.+ ...-.....+
T Consensus 161 g~--------------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGi 226 (355)
T 3sre_A 161 HK--------------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGI 226 (355)
T ss_dssp CT--------------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEE
T ss_pred cC--------------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcc
Confidence 11 2234677777777776665431 1223 2223456899
Q ss_pred EEecCCCeEEEEe-CCCcEEEEEccc
Q 043942 174 SVSAIRESLVSVS-VDGTARVFEIAE 198 (216)
Q Consensus 174 ~~~~~~~~l~s~~-~d~~v~vw~~~~ 198 (216)
+|+||++.|..+. ..+.|+.|++..
T Consensus 227 a~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 227 NISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp EECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred eECCCCCEEEEEeCCCCeEEEEEECC
Confidence 9999998776554 578999999864
No 318
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.66 E-value=0.55 Score=34.92 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=23.2
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCc
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGE 115 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~ 115 (216)
.....++|.|+|+++++ ..++.|+++| .+++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK 59 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc
Confidence 45789999999985554 5569999997 3454
No 319
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=94.54 E-value=0.88 Score=32.68 Aligned_cols=91 Identities=8% Similarity=0.071 Sum_probs=48.2
Q ss_pred CCCEEEEEcCC----CcEEEEECCCCceEEEEeCCCCcc----------------------cCcEEEEEECCCcceeee-
Q 043942 25 DGQLLASGGFH----GLVQNRDTSSRNLQCTVEGPRGGI----------------------EDSTVWMWNADRGAYLNM- 77 (216)
Q Consensus 25 ~~~~l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~----------------------~~~~v~i~d~~~~~~~~~- 77 (216)
++..++.|+.+ ..+.+||..+.+....-..+.... ....+.+||+.+.+-...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 55677777754 568889988875443322222111 124466777766532221
Q ss_pred -eeccCCCeeEEEEcCCCcEEEEecC---------CCeEEEEeCCCCcee
Q 043942 78 -FSGHGSGLTCGDFTTDGKTICTGSD---------NATLSIWNPKGGENF 117 (216)
Q Consensus 78 -~~~~~~~v~~~~~~~~~~~l~t~~~---------d~~i~~wd~~~~~~~ 117 (216)
+......-..+. -+++.++.|+. -..+.+||+.+.+-.
T Consensus 135 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~ 182 (306)
T 3ii7_A 135 SMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT 182 (306)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred CCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence 111111112222 25677777763 345888998877543
No 320
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.37 E-value=0.83 Score=36.33 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred cceEEEEEccCCCEEEEEcC-CCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCC
Q 043942 15 DSFSSLAFSTDGQLLASGGF-HGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTD 93 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~ 93 (216)
.....+..+|||++++.++. +.++.++|++...... .++ +.+.+ .......+ -.-...-.+|.++
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~---------~~k---~~~~~-~~~~ae~e-~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF---------AGK---LADPR-DVIVGEPE-LGLGPLHTTFDGR 388 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH---------TTC---CSCGG-GGEEECCB-CCSCEEEEEECSS
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh---------hcc---ccCcc-cceEeecc-CCCcccEEEECCC
Confidence 34567899999999888775 4455555543211000 000 00000 01112222 2335678899999
Q ss_pred CcEEEEecCCCeEEEEeCCC
Q 043942 94 GKTICTGSDNATLSIWNPKG 113 (216)
Q Consensus 94 ~~~l~t~~~d~~i~~wd~~~ 113 (216)
|....|.--|..|.-|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHH
T ss_pred CceEeeeeecceEEEEeccH
Confidence 97667777999999999974
No 321
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.34 E-value=0.87 Score=33.76 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=21.5
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEe
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWN 110 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd 110 (216)
.....++|.|+|+++++ ..++.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 45679999999985555 5669999998
No 322
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.10 E-value=1.3 Score=32.81 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=73.1
Q ss_pred CCcEEEEECCCCceEEEEeCC--------CCcc----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC
Q 043942 35 HGLVQNRDTSSRNLQCTVEGP--------RGGI----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD 102 (216)
Q Consensus 35 d~~v~vwd~~~~~~~~~~~~~--------~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~ 102 (216)
+..|.+-|+.+++....-... ...+ ...++.++|+++...+..+.- ...|.--.|-.+..+-++.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT-- 124 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-- 124 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEE--
T ss_pred CCEEEEEECCCCCCccccccccceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEc--
Confidence 347888999886544332221 2221 678999999999998888774 4568888887655443333
Q ss_pred CCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec---ccCeE
Q 043942 103 NATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC---VDGKV 163 (216)
Q Consensus 103 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~i 163 (216)
+..|+-|++... .+.+.+.....- ....|.....+++.++++..+ .++.+
T Consensus 125 ~taVyHWs~~~~s~P~kvFdR~~~L-----------~~~QIInY~~d~~~kW~~l~GI~~~~~~v 178 (365)
T 2xzh_A 125 DNAVYHWSMEGESQPVKMFDRHSSL-----------AGCQIINYRTDAKQKWLLLTGISAQQNRV 178 (365)
T ss_dssp SSEEEEEESSTTCCCEEEEECCGGG-----------TTCEEEEEEECTTSCEEEEEEEEEETTEE
T ss_pred CCcEEEEcccCCCCCceeeecchhc-----------ccceEEEEEECCCCCEEEEEeEeccCCcc
Confidence 457999999753 344455432111 235677777788888776543 35555
No 323
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.94 E-value=1.7 Score=33.69 Aligned_cols=30 Identities=20% Similarity=-0.001 Sum_probs=21.6
Q ss_pred ccceEEEEEccCCC-EEEEEcCCCcEEEEEC
Q 043942 14 KDSFSSLAFSTDGQ-LLASGGFHGLVQNRDT 43 (216)
Q Consensus 14 ~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~ 43 (216)
-...+.|+|.|+|. .++.+...|.|++++.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~ 43 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTP 43 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECT
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeC
Confidence 34567999999985 4444566788888864
No 324
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.32 E-value=1.7 Score=31.73 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=54.7
Q ss_pred cCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 81 HGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 81 ~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
....+..+++.|++.+++.+...+..+-+|-. +..-..+... ....+..+.+.+++..++.+. +
T Consensus 161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~-~ 224 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRT--------------TSRRLHNMGFTPDGRLWMIVN-G 224 (327)
T ss_dssp CCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECC--------------SSSCEEEEEECTTSCEEEEET-T
T ss_pred CCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCC--------------CCCccceeEECCCCCEEEEeC-C
Confidence 34568889999998888777554444444421 2221112110 345667778888777655432 2
Q ss_pred CeE--------------E-e---eeCCEEEEEEecCCCeEEEEeCCCcEE
Q 043942 161 GKV--------------D-G---HIDAIQSLSVSAIRESLVSVSVDGTAR 192 (216)
Q Consensus 161 ~~i--------------~-~---~~~~i~~~~~~~~~~~l~s~~~d~~v~ 192 (216)
|.+ . . ....+..+.+.++++.++++ .++.+.
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~ 273 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL 273 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE
Confidence 222 0 1 12347889998887766655 467663
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.83 E-value=0.99 Score=33.49 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=22.6
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCC
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPK 112 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~ 112 (216)
.....|+|.|+|+.++++...+.|++++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG 47 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC
Confidence 457899999999834445567899999853
No 326
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=92.71 E-value=2.4 Score=31.88 Aligned_cols=138 Identities=6% Similarity=0.008 Sum_probs=85.2
Q ss_pred cCcEEEEEECCCc--ceeeeeecc------CCCeeEEEEc---CC----CcEEEEe-cCCCeEEEEeCCCCceeEEeecc
Q 043942 60 EDSTVWMWNADRG--AYLNMFSGH------GSGLTCGDFT---TD----GKTICTG-SDNATLSIWNPKGGENFHAIRRS 123 (216)
Q Consensus 60 ~~~~v~i~d~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~t~-~~d~~i~~wd~~~~~~~~~~~~~ 123 (216)
..-.|.+||+.+. +.++++.-. ...+..+++. |+ +.++..+ +....|.|+|+.+++.-.... .
T Consensus 121 ~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~-~ 199 (381)
T 3q6k_A 121 HRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH-P 199 (381)
T ss_dssp CCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC-G
T ss_pred CCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc-C
Confidence 4567889999998 888776532 3457788887 22 2333333 356789999999998776553 2
Q ss_pred cccccccceEEEee----eecCeEEEEeCCC----CcEEEEecccC-eE-------------------EeeeC---CEEE
Q 043942 124 SLEFSLNYWMICTS----LYDGVTCLSWPGT----SKYLVTGCVDG-KV-------------------DGHID---AIQS 172 (216)
Q Consensus 124 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~l~~~~~~~-~i-------------------~~~~~---~i~~ 172 (216)
...+.........+ ....+..++++|+ ++.|+-....+ .+ .+..+ .-..
T Consensus 200 ~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 200 TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEE
T ss_pred CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcce
Confidence 22222111111122 2468999999997 66666444333 22 22222 2334
Q ss_pred EEEe-cCCCeEEEEeCCCcEEEEEccc
Q 043942 173 LSVS-AIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 173 ~~~~-~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
++.+ .+|.++++--..+.|..|+...
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 5675 5787777777789999999865
No 327
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.70 E-value=3.3 Score=33.45 Aligned_cols=171 Identities=9% Similarity=-0.013 Sum_probs=89.5
Q ss_pred cceEEEEEccCCCEEEEE-cCCCcEEEEECCCCceEEEEeC---------CCCcc--------------cCcEEEEEECC
Q 043942 15 DSFSSLAFSTDGQLLASG-GFHGLVQNRDTSSRNLQCTVEG---------PRGGI--------------EDSTVWMWNAD 70 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~---------~~~~~--------------~~~~v~i~d~~ 70 (216)
..+..++|.+..+.|.-+ ...+.|+.+++........+.. ...++ ..+.|.+.++.
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~ 419 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD 419 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence 457789999866555544 4467788888765443322221 01111 33444455554
Q ss_pred Ccceeeee-eccCCCeeEEEEcC-CCcEEEEecCCC--eEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEE
Q 043942 71 RGAYLNMF-SGHGSGLTCGDFTT-DGKTICTGSDNA--TLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLS 146 (216)
Q Consensus 71 ~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~t~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 146 (216)
++....+ .........|++.| +|..+.+-.... .|...++. |.....+... .-...+.++
T Consensus 420 -G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~--------------~l~~P~gla 483 (628)
T 4a0p_A 420 -GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFS--------------GLSKPIALA 483 (628)
T ss_dssp -SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECS--------------SCSCEEEEE
T ss_pred -CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEec--------------cCCCccEEE
Confidence 3332232 22345688999999 555555533332 57777766 4433333211 223456777
Q ss_pred eCCCCcEEEEec-ccCeE--------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccce
Q 043942 147 WPGTSKYLVTGC-VDGKV--------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 147 ~~~~~~~l~~~~-~~~~i--------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~ 202 (216)
++++...|+.+. ..+.| ........+++... +..+.+-...+.|...|..+++..
T Consensus 484 ~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 484 LDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred EeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence 777655444432 23333 11223456677644 444444445677777777665543
No 328
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.16 E-value=2.9 Score=35.68 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=33.9
Q ss_pred CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.+.+++..++..++++-+.|+++|+|++.+++.+.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 567778888888999999999999999999998887654
No 329
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.11 E-value=2.4 Score=30.34 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=59.8
Q ss_pred CCCeeEEEEcC-CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEeccc
Q 043942 82 GSGLTCGDFTT-DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 82 ~~~v~~~~~~~-~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 160 (216)
...|..+-... +...++..+.+|.++-..+..-. .. .......... ..+.+..+....+...++..+.+
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~--~~G~~~i~lk-------egD~l~~~~~~~~~~~ill~T~~ 136 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YK--AQGMPIIKLT-------EGDEVVSIASSVDETHILLFTKK 136 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TC--STTEECSCCC-------TTCCEEEEEECCSSCEEEEEETT
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hh--cCCeEEEecC-------CCCEEEEEEEeCCCCEEEEEECC
Confidence 34455443321 46788889999999988865432 10 0000000000 23444444444444456666666
Q ss_pred CeE----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 161 GKV----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 161 ~~i----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
|.+ ......|..+...+++.+++..+..|.++...+...
T Consensus 137 G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 137 GRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp SEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred CEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 665 111245666655566677888888999888887653
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=91.85 E-value=3.6 Score=31.84 Aligned_cols=151 Identities=11% Similarity=0.125 Sum_probs=89.4
Q ss_pred CCcEEEEECCCCceEEEEeCC--------CCcc----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC
Q 043942 35 HGLVQNRDTSSRNLQCTVEGP--------RGGI----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD 102 (216)
Q Consensus 35 d~~v~vwd~~~~~~~~~~~~~--------~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~ 102 (216)
+..|.|-|+.+++....-... ...+ ...++.++|+++...+..+.- ...|.--.|-.+.. |+..+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~e~VvfWkWis~~~-l~lVT- 123 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT- 123 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETTE-EEEEC-
T ss_pred CCeEEEEECCCCCcceecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-CCCceEEEecCCCe-EEEEc-
Confidence 347888999886544332221 1222 789999999999988888774 45677778865444 33332
Q ss_pred CCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEec---ccCeE---------------
Q 043942 103 NATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGC---VDGKV--------------- 163 (216)
Q Consensus 103 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~~~~i--------------- 163 (216)
+..|+-|++... .+.+.+.....- ....|.....+++.++++..+ .++.+
T Consensus 124 ~taVyHWsi~~~s~P~kvFdR~~~L-----------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ 192 (494)
T 1bpo_A 124 DNAVYHWSMEGESQPVKMFDRHSSL-----------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ 192 (494)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGG-----------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE
T ss_pred CCeeEEecccCCCCchhheecchhc-----------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc
Confidence 567999999743 344555432111 235677777788888876543 34544
Q ss_pred --EeeeCCEEEEEEecC---CCeEEEEeCC---CcEEEEEcccc
Q 043942 164 --DGHIDAIQSLSVSAI---RESLVSVSVD---GTARVFEIAEF 199 (216)
Q Consensus 164 --~~~~~~i~~~~~~~~---~~~l~s~~~d---~~v~vw~~~~~ 199 (216)
.+|......+...-+ .+.++.+... ++++|-++...
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 444443333333211 1234444332 78999988543
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.74 E-value=2.7 Score=30.21 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=46.2
Q ss_pred CCCEEEEEcC----C-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcce
Q 043942 25 DGQLLASGGF----H-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAY 74 (216)
Q Consensus 25 ~~~~l~s~~~----d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~ 74 (216)
++++++.|+. + ..+.+||+.+.+....-..+.... .-..+.+||+.+.+-
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 5566777765 2 468888988765333211111110 123466677765432
Q ss_pred ee--eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942 75 LN--MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN 116 (216)
Q Consensus 75 ~~--~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~ 116 (216)
.. .+......-..+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 21 11111111122222 56777777654 4588888887654
No 332
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=91.23 E-value=4.4 Score=31.72 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=26.6
Q ss_pred CCEEEEEEecC-CCeEEEEeCCCcEEEEEccccccee
Q 043942 168 DAIQSLSVSAI-RESLVSVSVDGTARVFEIAEFRRAT 203 (216)
Q Consensus 168 ~~i~~~~~~~~-~~~l~s~~~d~~v~vw~~~~~~~~~ 203 (216)
.....++++++ |.++++-.....|+.++++......
T Consensus 444 ~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 444 RDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 45789999997 7777777778899999987655443
No 333
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=90.96 E-value=1.2 Score=37.95 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=34.0
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 54 (216)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 467778888888999999999999999999999887754
No 334
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=89.69 E-value=6.8 Score=31.38 Aligned_cols=75 Identities=15% Similarity=0.018 Sum_probs=50.3
Q ss_pred EEEEEcCCCcEEEEECCCCceEEEEeCCCCcc-----------------------------------------------c
Q 043942 28 LLASGGFHGLVQNRDTSSRNLQCTVEGPRGGI-----------------------------------------------E 60 (216)
Q Consensus 28 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----------------------------------------------~ 60 (216)
.|.||+..|.|+|+-+.+++.+..+..-.... .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 37899999999999999999999886533222 4
Q ss_pred CcEEEEEECCCcceeeeeec-cCCCeeEEEEc--CCCcEEEEecC
Q 043942 61 DSTVWMWNADRGAYLNMFSG-HGSGLTCGDFT--TDGKTICTGSD 102 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~t~~~ 102 (216)
+..|-..++..-++-+.++- ....+..++|- |+..+++.++.
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence 44455555554444333332 23567788886 67778877764
No 335
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.62 E-value=6 Score=30.67 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=23.3
Q ss_pred CCeeEEEEcCCCc-EEEEecCCCeEEEEeCC
Q 043942 83 SGLTCGDFTTDGK-TICTGSDNATLSIWNPK 112 (216)
Q Consensus 83 ~~v~~~~~~~~~~-~l~t~~~d~~i~~wd~~ 112 (216)
.....|+|.|++. .++++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4467999999996 45556788999999754
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=89.59 E-value=4.1 Score=29.25 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceee--
Q 043942 25 DGQLLASGGFH-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLN-- 76 (216)
Q Consensus 25 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~-- 76 (216)
+++.++.|+.+ ..+.+||+.+.+....-..+.... ....+.+||+.+.+-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 200 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT 200 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC
Confidence 55666776643 357888887764332211111110 13456677776543221
Q ss_pred eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942 77 MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN 116 (216)
Q Consensus 77 ~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~ 116 (216)
.+......-..+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 201 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 201 AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE
Confidence 11111111222222 56777777654 4588888876643
No 337
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=88.84 E-value=4.9 Score=28.63 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCC-----cEEEEECCCCceEEEEeCCCCcc------c-----------------CcEEEEEECCCcceee
Q 043942 25 DGQLLASGGFHG-----LVQNRDTSSRNLQCTVEGPRGGI------E-----------------DSTVWMWNADRGAYLN 76 (216)
Q Consensus 25 ~~~~l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~------~-----------------~~~v~i~d~~~~~~~~ 76 (216)
+++.++.|+.++ .+.+||+.+.+....-..+.... . -..+.+||+.+.+-..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 566777777553 47788887765433221111110 1 2446777776553222
Q ss_pred --eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942 77 --MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN 116 (216)
Q Consensus 77 --~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~ 116 (216)
.+.........+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 188 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 188 IAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 12111111122222 56777777754 3577888876653
No 338
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.49 E-value=5.2 Score=28.74 Aligned_cols=54 Identities=7% Similarity=0.128 Sum_probs=27.9
Q ss_pred cEEEEEECCCcceee--eeeccCCCeeEEEEcCCCcEEEEecCCC-----eEEEEeCCCCcee
Q 043942 62 STVWMWNADRGAYLN--MFSGHGSGLTCGDFTTDGKTICTGSDNA-----TLSIWNPKGGENF 117 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~t~~~d~-----~i~~wd~~~~~~~ 117 (216)
..+.+||+.+.+-.. .+......-..+.+ +++.++.|+.++ .+.+||+.+.+-.
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred ceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 456777776553221 11111111122222 567777777543 4788888876543
No 339
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=87.94 E-value=5.7 Score=28.33 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=47.5
Q ss_pred CCCEEEEEcCC------CcEEEEECCCCceEEEEeCCCCcc---------------------c----CcEEEEEECCCcc
Q 043942 25 DGQLLASGGFH------GLVQNRDTSSRNLQCTVEGPRGGI---------------------E----DSTVWMWNADRGA 73 (216)
Q Consensus 25 ~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~---------------------~----~~~v~i~d~~~~~ 73 (216)
+++.++.|+.+ ..+.+||..+.+....-..+.... . -..+.+||+.+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 56677777765 458899988775433221111111 1 4557777877653
Q ss_pred eeee--eeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942 74 YLNM--FSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN 116 (216)
Q Consensus 74 ~~~~--~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~ 116 (216)
-... +......- ++... +++.++.|+.+ ..+.+||+.+.+-
T Consensus 181 W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 181 WTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp EEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred EEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 2211 11111111 22222 56777777643 3578888876643
No 340
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=87.28 E-value=6.2 Score=28.03 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=47.9
Q ss_pred CCCEEEEEcCC-----CcEEEEECCCCceEEEEeCCCCcc---------------------cCcEEEEEECCCcceeee-
Q 043942 25 DGQLLASGGFH-----GLVQNRDTSSRNLQCTVEGPRGGI---------------------EDSTVWMWNADRGAYLNM- 77 (216)
Q Consensus 25 ~~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~---------------------~~~~v~i~d~~~~~~~~~- 77 (216)
+++.++.|+.+ ..+.+||+.+.+....-..+.... ....+.+||+.+.+-...
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 56677777654 358889988775444322222111 134566777765533221
Q ss_pred -eeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCcee
Q 043942 78 -FSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGENF 117 (216)
Q Consensus 78 -~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~~ 117 (216)
+......-..+.+ +++.++.|+.+ ..+.+||+.+.+-.
T Consensus 192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence 1111111122222 56777777754 45888888876543
No 341
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=87.24 E-value=6.6 Score=35.29 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCcEEEEECCCCceEEEEeC--------CCCcc----cCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecC
Q 043942 35 HGLVQNRDTSSRNLQCTVEG--------PRGGI----EDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD 102 (216)
Q Consensus 35 d~~v~vwd~~~~~~~~~~~~--------~~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~ 102 (216)
...|.|-|+.+++.+..-.. +...+ ...++.|+|+++...+..+.- ...|.--.|-.+...-+++
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT-- 123 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT-- 123 (1630)
T ss_pred CceEEEEECCCCCCcccccccchhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc--
Confidence 34788888887654422211 11111 788899999998887777663 4567777886544433332
Q ss_pred CCeEEEEeCCCC-ceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEe
Q 043942 103 NATLSIWNPKGG-ENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTG 157 (216)
Q Consensus 103 d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 157 (216)
+..|+-|++... .+...+...+.- ....|..-..+++.++++..
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L-----------~~~QIinY~~d~~~kW~~l~ 168 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSL-----------AGCQIINYRTDAKQKWLLLT 168 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhc-----------ccCeeEEeeeCCCCCeEEEE
Confidence 457999999742 222223221000 24567777778888877643
No 342
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.04 E-value=6.7 Score=28.16 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=27.9
Q ss_pred cEEEEEECCCcceee--eeeccCCCeeEEEEcCCCcEEEEecC-C-----CeEEEEeCCCCce
Q 043942 62 STVWMWNADRGAYLN--MFSGHGSGLTCGDFTTDGKTICTGSD-N-----ATLSIWNPKGGEN 116 (216)
Q Consensus 62 ~~v~i~d~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~t~~~-d-----~~i~~wd~~~~~~ 116 (216)
..+.+||+.+.+-.. .+......- +++. .+++.++.|+. + ..+.+||+.+.+-
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 456777777653221 111111111 2222 35677777775 2 4588899887654
No 343
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=86.17 E-value=7.6 Score=27.93 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCCEEEEEcCC-------CcEEEEECCCCceEEEEeCCCC------cc----------------cCcEEEEEECCCccee
Q 043942 25 DGQLLASGGFH-------GLVQNRDTSSRNLQCTVEGPRG------GI----------------EDSTVWMWNADRGAYL 75 (216)
Q Consensus 25 ~~~~l~s~~~d-------~~v~vwd~~~~~~~~~~~~~~~------~~----------------~~~~v~i~d~~~~~~~ 75 (216)
+++.++.|+.+ ..+.+||..+.+....-..+.. .. .-..+.+||+.+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 45666777653 2477888877654332111111 00 1234777777765322
Q ss_pred e--eeeccCCCeeEEEEcCCCcEEEEecCC-----CeEEEEeCCCCce
Q 043942 76 N--MFSGHGSGLTCGDFTTDGKTICTGSDN-----ATLSIWNPKGGEN 116 (216)
Q Consensus 76 ~--~~~~~~~~v~~~~~~~~~~~l~t~~~d-----~~i~~wd~~~~~~ 116 (216)
. .+......-..+.+ +++.++.|+.+ ..+.+||+.+.+-
T Consensus 189 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 189 DLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 1 11111111122222 56777777643 3467788776653
No 344
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=84.37 E-value=9.4 Score=27.42 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=17.6
Q ss_pred CCCcEEEEecC------CCeEEEEeCCCCcee
Q 043942 92 TDGKTICTGSD------NATLSIWNPKGGENF 117 (216)
Q Consensus 92 ~~~~~l~t~~~------d~~i~~wd~~~~~~~ 117 (216)
.+++.++.|+. -..+.+||+.+.+-.
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 36677777764 245889998877543
No 345
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=84.30 E-value=6.5 Score=31.58 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=37.8
Q ss_pred eeEEEEcCCCcEEEEecCC------------CeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCc
Q 043942 85 LTCGDFTTDGKTICTGSDN------------ATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSK 152 (216)
Q Consensus 85 v~~~~~~~~~~~l~t~~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 152 (216)
.--|+|+|.|++++.-..+ ..+.+.+..+++....+... ...+++.++|+||++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P--------------~gaE~TG~~fspDg~ 543 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------------IGCEVTGISFSPDQK 543 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC--------------TTCEEEEEEECTTSS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCC--------------CCccCcCeeECCCCC
Confidence 3468899999876654322 23555565656544433321 456788899999988
Q ss_pred EEEEe
Q 043942 153 YLVTG 157 (216)
Q Consensus 153 ~l~~~ 157 (216)
.|++.
T Consensus 544 tlfvn 548 (592)
T 3zwu_A 544 TLFVG 548 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77764
No 346
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.18 E-value=1.4 Score=38.33 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=32.9
Q ss_pred CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.+.+++..++..++++-+.|+++|+|++.+++.+.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 445666677888999999999999999999999887664
No 347
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.78 E-value=1.3 Score=38.48 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=32.3
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 54 (216)
.+.+++..++..++++-+.|+++|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 344566667788999999999999999999998887654
No 348
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=81.82 E-value=3.5 Score=33.82 Aligned_cols=37 Identities=16% Similarity=-0.001 Sum_probs=30.6
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCceEEEEeC
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQCTVEG 54 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 54 (216)
.|.++.+ +..++++-+.|.++|+|++.+++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 467999999999999999999998888766
No 349
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=81.61 E-value=3.3 Score=33.99 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=30.6
Q ss_pred CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeec
Q 043942 84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRR 122 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~ 122 (216)
.|.++.+ +..++++-+.|+++|+|++++++.+.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 477999999999999999999998887766
No 350
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=81.03 E-value=14 Score=26.99 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=11.2
Q ss_pred CcEEEEECCCCceEEE
Q 043942 36 GLVQNRDTSSRNLQCT 51 (216)
Q Consensus 36 ~~v~vwd~~~~~~~~~ 51 (216)
..+.+||..+.+....
T Consensus 168 ~~v~~yd~~~~~W~~~ 183 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYA 183 (357)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred ccEEEEeCCCCcEEEC
Confidence 4688999988754443
No 351
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=80.30 E-value=16 Score=29.23 Aligned_cols=60 Identities=20% Similarity=0.171 Sum_probs=38.8
Q ss_pred CeeEEEEcCCCcEEEEecC------------CCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCC
Q 043942 84 GLTCGDFTTDGKTICTGSD------------NATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTS 151 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 151 (216)
....|.|.++|.+.+.... ...+..++..+++....+... ....++.++|+||+
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P--------------~~aEpnGiafSPD~ 542 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP--------------IGCEVTGISFSPDQ 542 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC--------------TTCEEEEEEECTTS
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC--------------CCccccCCEECCCC
Confidence 4567999999987774321 125666666666654433210 23567899999999
Q ss_pred cEEEEe
Q 043942 152 KYLVTG 157 (216)
Q Consensus 152 ~~l~~~ 157 (216)
+.|++.
T Consensus 543 ktLfV~ 548 (592)
T 4a9v_A 543 KTLFVG 548 (592)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 887765
No 352
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=75.14 E-value=24 Score=28.34 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=28.9
Q ss_pred CcEEEEEECCCcceeeeeeccC-CCeeEEEEcCCCcEEEEe
Q 043942 61 DSTVWMWNADRGAYLNMFSGHG-SGLTCGDFTTDGKTICTG 100 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~t~ 100 (216)
++.+.+.+..+++..+-+.++. ..++.+.|+||++.|.+.
T Consensus 508 nn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 508 NNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp SCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4556666777777666565553 579999999999887765
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=74.24 E-value=24 Score=26.08 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=25.6
Q ss_pred CcEEEEecCCCeEEEEeCCCCceeEEeecc
Q 043942 94 GKTICTGSDNATLSIWNPKGGENFHAIRRS 123 (216)
Q Consensus 94 ~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~ 123 (216)
+..++.++.||.|.-+|..+|+.+-.+...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~ 39 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE 39 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC
Confidence 347888999999999999999998888753
No 354
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=72.65 E-value=50 Score=29.08 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=40.1
Q ss_pred cCcEEEEEECCCccee--eeeeccCCCeeEEEEcCC------CcEEEEecC-CCeEEEEeCCCCceeEEe
Q 043942 60 EDSTVWMWNADRGAYL--NMFSGHGSGLTCGDFTTD------GKTICTGSD-NATLSIWNPKGGENFHAI 120 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~------~~~l~t~~~-d~~i~~wd~~~~~~~~~~ 120 (216)
.++.+.++++..+... .... -...|.|+++.|. +++++.|.. |++++++++.+.+.+...
T Consensus 530 ~g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~ 598 (1158)
T 3ei3_A 530 VGRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKE 598 (1158)
T ss_dssp ETTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEE
Confidence 4456666666544321 1222 3567999999863 468999986 999999999876655433
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=72.37 E-value=36 Score=27.33 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=30.0
Q ss_pred cCcEEEEEECCCcceeeeeecc-CCCeeEEEEcCCCcEEEEe
Q 043942 60 EDSTVWMWNADRGAYLNMFSGH-GSGLTCGDFTTDGKTICTG 100 (216)
Q Consensus 60 ~~~~v~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~t~ 100 (216)
..+.+..++..+++....+.+. ...++.++|+||++.|.++
T Consensus 507 gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 507 GNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3456777788777766555543 3568999999999988765
No 356
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=66.52 E-value=34 Score=24.68 Aligned_cols=93 Identities=8% Similarity=-0.035 Sum_probs=49.1
Q ss_pred EEEccCCCEEEEEcCC--------------CcEEEEECCCCceEEEEeCCCCcc--cCcE-------------EEEEECC
Q 043942 20 LAFSTDGQLLASGGFH--------------GLVQNRDTSSRNLQCTVEGPRGGI--EDST-------------VWMWNAD 70 (216)
Q Consensus 20 ~~~s~~~~~l~s~~~d--------------~~v~vwd~~~~~~~~~~~~~~~~~--~~~~-------------v~i~d~~ 70 (216)
--++++|++|+-+... ..|+..++...+...........+ .++. |+.-++.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d 137 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRID 137 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETT
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECC
Confidence 3467888888876543 367777777665433322221111 2223 3333333
Q ss_pred CcceeeeeeccCCCeeEEEEcCCCcEEEEecC-CCeEEEEeCCCCcee
Q 043942 71 RGAYLNMFSGHGSGLTCGDFTTDGKTICTGSD-NATLSIWNPKGGENF 117 (216)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~-d~~i~~wd~~~~~~~ 117 (216)
.. ....+..+.. .+++|+++.|.-.+. ...|.+-++..+...
T Consensus 138 Gs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 138 GE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp SC-CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred CC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 22 2222332222 456777877775554 677888888755543
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=63.20 E-value=61 Score=26.53 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=16.8
Q ss_pred CCcEEEEecCC------CeEEEEeCCCCce
Q 043942 93 DGKTICTGSDN------ATLSIWNPKGGEN 116 (216)
Q Consensus 93 ~~~~l~t~~~d------~~i~~wd~~~~~~ 116 (216)
+++.++.|+.+ ..+.+||..+.+-
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W 480 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREW 480 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcE
Confidence 67778887743 3478888887643
No 358
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=61.45 E-value=67 Score=26.39 Aligned_cols=168 Identities=14% Similarity=0.037 Sum_probs=88.4
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEECCCCceE----------EEEeCCCCcc---cCcEEEEEECCCcceeeeee--
Q 043942 15 DSFSSLAFSTDGQLLASGGFHGLVQNRDTSSRNLQ----------CTVEGPRGGI---EDSTVWMWNADRGAYLNMFS-- 79 (216)
Q Consensus 15 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~----------~~~~~~~~~~---~~~~v~i~d~~~~~~~~~~~-- 79 (216)
..|.++.-..+|. |-.++.+| +..||..+.+.. ..+......+ ..+-+..+|..+++.. .+.
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~ 139 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTR 139 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHH
T ss_pred ceEEEEEEcCCCc-EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccC
Confidence 4588887777664 44455454 788987765321 1111111111 2335677777655432 221
Q ss_pred ---ccCCCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEE
Q 043942 80 ---GHGSGLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVT 156 (216)
Q Consensus 80 ---~~~~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 156 (216)
.....|.++...+++.+.+. +.. -+..+|..+++... +...... . .....|.++...+++..|..
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~-~~~~~~~-~--------~~~~~i~~i~~d~~~~~lWi 207 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFEG-IPLPVHS-S--------QSNLFVNSLLEDTTRQCVWI 207 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEE-ECCCCCT-T--------CSSCCEEEEEEETTTTEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceEE-ecCCCcc-c--------cccceeEEEEEECCCCEEEE
Confidence 12345788888877776653 444 47788877655322 2211000 0 01234677777766665444
Q ss_pred ecccCeE-------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 157 GCVDGKV-------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 157 ~~~~~~i-------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
++..|.. ......|.++...++|.+.+. +. +-+.+++..+.
T Consensus 208 gt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~ 261 (758)
T 3ott_A 208 GTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTT 261 (758)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTS
T ss_pred EECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCC
Confidence 5444432 111234777777777776554 33 45777776553
No 359
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=60.83 E-value=44 Score=24.06 Aligned_cols=48 Identities=10% Similarity=0.011 Sum_probs=26.5
Q ss_pred CcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEec----CCCeEEEEeCCC
Q 043942 61 DSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGS----DNATLSIWNPKG 113 (216)
Q Consensus 61 ~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~----~d~~i~~wd~~~ 113 (216)
...|+..++..++... +.. . .+..|+++++.|+-.. ....|..-++..
T Consensus 87 ~~~Iy~i~~dg~~~~~-l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG 138 (302)
T 3s25_A 87 RNSLCRIKRNGHGSTV-LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDG 138 (302)
T ss_dssp SEEEEEEETTSCCCEE-EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTS
T ss_pred CCeEEEEeCCCCcceE-eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCC
Confidence 3456666666554322 221 1 1236777888887654 345566667663
No 360
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=60.20 E-value=43 Score=23.77 Aligned_cols=92 Identities=12% Similarity=0.078 Sum_probs=46.4
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCc----------eEEEEeC---CCCcccCcEEEEEECCCcceeeeeeccC
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN----------LQCTVEG---PRGGIEDSTVWMWNADRGAYLNMFSGHG 82 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----------~~~~~~~---~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 82 (216)
.|..++..... .++. . ||.|..|-....- .+..+.. |.-.+.++.|+.|-.+..-.+..-..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~~ 101 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVPAEAR 101 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCCGGGS
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCCcccC
Confidence 46666655432 2333 4 8888888765421 1111111 1111267888888765422111111112
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~ 113 (216)
..|..++...+...++ . |+.|+.|-...
T Consensus 102 ~~v~~ia~G~~hs~al--~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 102 SGVDAIAAGAWASYAL--K-DGKVIAWGDDS 129 (282)
T ss_dssp SSEEEEEEETTEEEEE--E-TTEEEEEECCT
T ss_pred CCeEEEECcCCEEEEE--e-CCeEEEecCCC
Confidence 4577777654433333 3 88999997654
No 361
>3izo_F Fiber; pentameric penton base, trimeri viral protein; 3.60A {Human adenovirus 5}
Probab=54.08 E-value=37 Score=27.17 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=56.3
Q ss_pred EEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE-Eecc---cCeE
Q 043942 88 GDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV-TGCV---DGKV 163 (216)
Q Consensus 88 ~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~---~~~i 163 (216)
+.|...|...+.-..+....+|-.-+...-+.+.. ..+.-..++..+.|..+. +.+- .|.+
T Consensus 381 L~f~s~G~i~~~~~~~~~~TLWTtpdPspNc~i~~---------------~~D~KltL~LtK~Gs~Vlgtvsl~~v~g~~ 445 (581)
T 3izo_F 381 LSFDSTGAITVGNKNNDKLTLWTTPAPSPNCRLNA---------------EKDAKLTLVLTKCGSQILATVSVLAVKGSL 445 (581)
T ss_pred eeecCCCcEEecCCCCCCccccCCCCCCCCeEEec---------------CCCcEEEEEEEecCCEEEEEEEEEEeccce
Confidence 44444454444333444466666554444444433 334445555566554332 2221 2222
Q ss_pred E----eeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccccceeecCCcceeEEE
Q 043942 164 D----GHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEFRRATKAPSYSFKLFF 214 (216)
Q Consensus 164 ~----~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~~~~~~~~~~~~~~~~ 214 (216)
. .+..--..+.|+.+|.++-+++.+.. -|..+.+.....-|.+....||
T Consensus 446 ~~i~~t~~~~~i~L~FD~~G~Ll~~s~l~~~--~W~~r~~~s~~~~~~~na~~FM 498 (581)
T 3izo_F 446 APISGTVQSAHLIIRFDENGVLLNNSFLDPE--YWNFRNGDLTEGTAYTNAVGFM 498 (581)
T ss_pred EecCCCcccEEEEEEECCCCCCCcCCCCCcc--cccccCCCccCCcccccChhhC
Confidence 1 11223456788888987766655544 5988887766655555444443
No 362
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=49.16 E-value=38 Score=19.88 Aligned_cols=17 Identities=6% Similarity=0.126 Sum_probs=10.8
Q ss_pred EEEeCCCCcEEEEeccc
Q 043942 144 CLSWPGTSKYLVTGCVD 160 (216)
Q Consensus 144 ~~~~~~~~~~l~~~~~~ 160 (216)
.+.+..+|++++.-...
T Consensus 54 ~L~l~~dGnLvL~d~~~ 70 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSG 70 (105)
T ss_dssp EEEECTTSCEEEECTTC
T ss_pred EEEEeCCccEEEECCCc
Confidence 46677888876654433
No 363
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=47.15 E-value=73 Score=22.55 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=44.7
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCC-c---------eEEEEeC---CCCcccCcEEEEEECCCcceeeeeeccC
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSR-N---------LQCTVEG---PRGGIEDSTVWMWNADRGAYLNMFSGHG 82 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-~---------~~~~~~~---~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 82 (216)
.|..++..... .++. . ||.|..|-.... + .+..+.. |.-.+.++.|+.|-.+..-.+..-....
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg~~~~~~ 140 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQ 140 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGG
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCCCCccCC
Confidence 45555554332 2333 3 788888875532 1 1222211 1111157888888765422211111123
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCC
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKG 113 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~ 113 (216)
..|..++...+...++ . |+.++.|-...
T Consensus 141 ~~i~~i~~G~~~~~~l--~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 141 SGVTALDGGVYTALAV--K-NGGVIAWGDNY 168 (282)
T ss_dssp SSEEEEEECSSEEEEE--E-TTEEEEEECCT
T ss_pred CCeEEEEcccCEEEEE--E-CCEEEEecCCC
Confidence 4566666544332222 3 68899987654
No 364
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=46.66 E-value=1.2e+02 Score=24.85 Aligned_cols=54 Identities=11% Similarity=0.166 Sum_probs=29.9
Q ss_pred EEEEEECCCccee--eeeeccCCCeeEEEEcCCCcEEEEecCCC--eEEEEeCCCCcee
Q 043942 63 TVWMWNADRGAYL--NMFSGHGSGLTCGDFTTDGKTICTGSDNA--TLSIWNPKGGENF 117 (216)
Q Consensus 63 ~v~i~d~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~t~~~d~--~i~~wd~~~~~~~ 117 (216)
.+.+||+.+.+-. ..+..... -.+.+.-.+++.++.|+.++ .+.+||+.+..-.
T Consensus 469 dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~ 526 (695)
T 2zwa_A 469 DNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526 (695)
T ss_dssp CCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE
T ss_pred cEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE
Confidence 4666777654322 11211111 12333323788888887654 6899999877643
No 365
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=43.81 E-value=90 Score=22.58 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=54.5
Q ss_pred CCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------
Q 043942 93 DGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------- 163 (216)
Q Consensus 93 ~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------- 163 (216)
+...++..+..|.++...+..-...... . ...... ...+.+..+....+...++..+.+|..
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~-G-~~~i~L-------~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~ 183 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSR-G-VIVIKL-------NDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR 183 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC-----C-EECBCC-------CTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCC-c-EEEEec-------CCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHcc
Confidence 3567888888999888877532211100 0 000000 023445444443334456666666665
Q ss_pred -------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEcccc
Q 043942 164 -------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAEF 199 (216)
Q Consensus 164 -------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~~ 199 (216)
......|..+..-+++..+++.+..|..+..++...
T Consensus 184 ~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 184 LTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp BCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred ccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 111345666655555667888888999988888653
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=43.28 E-value=95 Score=22.71 Aligned_cols=143 Identities=13% Similarity=0.137 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceEEEEeCCCCcccCcEEEEEECCCcceeeeeeccCCCeeEEEEcCCCcEEEEecCCC
Q 043942 25 DGQLLASGGFHGLVQNRDTSSRNLQCTVEGPRGGIEDSTVWMWNADRGAYLNMFSGHGSGLTCGDFTTDGKTICTGSDNA 104 (216)
Q Consensus 25 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~t~~~d~ 104 (216)
+..+++.++.+|.++--.+....... +.+.....++. ...+..+........++..+..|
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~-------------------r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G 167 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNR-------------------SGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANG 167 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCC-------------------SSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccc-------------------cCceEEEEECC-CCEEEEEEEecCCCEEEEEECCC
Confidence 46788888888887766654321100 01222223333 23344444444455677777888
Q ss_pred eEEEEeCC--CCcee----EEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE---------------
Q 043942 105 TLSIWNPK--GGENF----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV--------------- 163 (216)
Q Consensus 105 ~i~~wd~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i--------------- 163 (216)
.+..+... .-... .-...-.+ ...+.|.++..-+++.+++..+..|.+
T Consensus 168 ~~~rf~~~~~eip~~gr~a~Gv~~i~L-----------~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~ 236 (327)
T 3uc1_A 168 QSIRFSATDEALRPMGRATSGVQGMRF-----------NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG 236 (327)
T ss_dssp EEEEEECCTTTSCCCCTTSBCEESSCC-----------CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred eEEEEECcccccCcCCcCCCCeeeecC-----------CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC
Confidence 88777765 21110 00000000 033456666555556678888888876
Q ss_pred --------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 164 --------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 164 --------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
......+..+....+...++..+.+|.+.-++...
T Consensus 237 ~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 237 KGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 00022344444333444555556667666666543
No 367
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=43.24 E-value=91 Score=22.53 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=13.9
Q ss_pred CCCEEEEEcCC-CcEEEEECCC
Q 043942 25 DGQLLASGGFH-GLVQNRDTSS 45 (216)
Q Consensus 25 ~~~~l~s~~~d-~~v~vwd~~~ 45 (216)
+++.++.|+.+ ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 56666666643 4688888864
No 368
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=42.74 E-value=35 Score=27.91 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=31.0
Q ss_pred EEEEecccCeE------------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 153 YLVTGCVDGKV------------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 153 ~l~~~~~~~~i------------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
.++.|+.+|.| .....+|..+.++++.++|..++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 46778888887 012456788999999999999988876665
No 369
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.83 E-value=1e+02 Score=22.27 Aligned_cols=102 Identities=19% Similarity=0.139 Sum_probs=55.7
Q ss_pred CCeeEEEE-c--CCCcEEEEecCCCeEEEEeCCCCcee-----EEeecccccccccceEEEeeeecCeEEEEeCCCCcEE
Q 043942 83 SGLTCGDF-T--TDGKTICTGSDNATLSIWNPKGGENF-----HAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYL 154 (216)
Q Consensus 83 ~~v~~~~~-~--~~~~~l~t~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 154 (216)
..|..+.. . .++.+++..+.+|.++-..+..-... ..+... ..+.+..+....+...+
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~--------------~~d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLV--------------DGDELIGVDLTSGEDEV 160 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCC--------------TTCCEEEEEEECTTCEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEEC--------------CCCEEEEEEEeCCCCEE
Confidence 34555433 2 34567888899999998876422111 111100 12344444333333445
Q ss_pred EEecccCeE----------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEEEEccc
Q 043942 155 VTGCVDGKV----------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARVFEIAE 198 (216)
Q Consensus 155 ~~~~~~~~i----------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~vw~~~~ 198 (216)
+..+.+|.+ ......|.++..-+++..+++.+..|..+-.++..
T Consensus 161 ~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 161 MLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 555555554 11224566665545556788888888888887754
No 370
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=36.87 E-value=48 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=21.8
Q ss_pred eCCEEEEEEecCCCeEEEEeCCCcEEE
Q 043942 167 IDAIQSLSVSAIRESLVSVSVDGTARV 193 (216)
Q Consensus 167 ~~~i~~~~~~~~~~~l~s~~~d~~v~v 193 (216)
..+|..+.++++..+|..++.++.++|
T Consensus 461 ~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 461 PTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp CCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred CCccceEEEcCCCCEEEEEECCeEEEE
Confidence 357889999999999998888776655
No 371
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=34.14 E-value=73 Score=18.76 Aligned_cols=72 Identities=6% Similarity=0.017 Sum_probs=36.7
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCc----eEEEEeCCCCcccCcEEEEEECCCcceee-eeeccCCCeeEEEEc
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRN----LQCTVEGPRGGIEDSTVWMWNADRGAYLN-MFSGHGSGLTCGDFT 91 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~v~i~d~~~~~~~~-~~~~~~~~v~~~~~~ 91 (216)
...+.+.+||++++.- ..-.+|...+.. ....+. .+|.+.++|-. +..+- ...........+.+.
T Consensus 21 ~~~l~~~~dGnlvl~~---~~~~vW~sn~~~~~~~~~l~l~------~dGNLVl~~~~-~~~~W~S~t~~~~g~~~l~l~ 90 (110)
T 3a0c_A 21 SYRLIMQGDCNFVLYD---SGKPVWASNTGGLGSGCRLTLH------NNGNLVIYDQS-NRVIWQTKTNGKEDHYVLVLQ 90 (110)
T ss_dssp TEEEEECTTSCEEEEE---TTEEEEECCCTTSCSSCEEEEC------TTSCEEEECTT-CCEEEECCCCCSSSCCEEEEC
T ss_pred CEEEEEcCCCcEEEEE---CCEEEEECCCCCCCCcEEEEEe------CCCCEEEECCC-CcEEEecCCCCCCCCEEEEEe
Confidence 3556777777766653 234677765432 112222 67778887753 33322 222222223355666
Q ss_pred CCCcEEE
Q 043942 92 TDGKTIC 98 (216)
Q Consensus 92 ~~~~~l~ 98 (216)
++|.+++
T Consensus 91 ~dGnlvl 97 (110)
T 3a0c_A 91 QDRNVVI 97 (110)
T ss_dssp TTSCEEE
T ss_pred CCccEEE
Confidence 6666544
No 372
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=29.73 E-value=90 Score=18.44 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=26.1
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCc----eEEEEeCCCCcccCcEEEEEECC
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRN----LQCTVEGPRGGIEDSTVWMWNAD 70 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~v~i~d~~ 70 (216)
-..+.+..||++++.-. ++ +|...+.. ....+. .+|.+.++|-.
T Consensus 21 ~~~L~~q~dGnLvl~~~-~~---vW~snt~~~~~~~~l~l~------~dGNLVl~~~~ 68 (111)
T 3mez_A 21 SAAFVMQGDCNLVLYNE-AG---GFQSNTHGRGVDCTLRLN------NRGQLEIHSAN 68 (111)
T ss_dssp TEEEEECTTSCEEEECS-SC---CEECCCTTSCSSCEEEEC------TTSCEEEECSS
T ss_pred CEEEEEccCCeEEEECC-CC---EEECCcccCCcCEEEEEc------CCCcEEEEeCC
Confidence 35677777887766432 22 78765532 222222 67888888764
No 373
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=28.68 E-value=98 Score=18.56 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=21.2
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEECCCCc----eEEEEeCCCCcccCcEEEEEEC
Q 043942 17 FSSLAFSTDGQLLASGGFHGLVQNRDTSSRN----LQCTVEGPRGGIEDSTVWMWNA 69 (216)
Q Consensus 17 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~v~i~d~ 69 (216)
...+.|.++|+++..-. .-.+|...+.. ....+. .+|.+.++|-
T Consensus 31 ~~~L~~~~dgnlvly~~---~~~vW~sn~~~~~~~~~l~l~------~dGNLVl~d~ 78 (119)
T 1b2p_A 31 VYRFIMQTDCNLVLYDN---NNPIWATNTGGLGNGCRAVLQ------PDGVLVVITN 78 (119)
T ss_dssp EEEEEECTTSCEEEEET---TEEEEECCCTTSCSSCEEEEC------TTSCEEEECT
T ss_pred CEEEEEecCCCEEEEEC---CEEEEeCCCccCCCceEEEEc------cCCEEEEEeC
Confidence 34555666666544321 34566654321 111221 5677777763
No 374
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=26.07 E-value=85 Score=25.69 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=36.4
Q ss_pred CeEEEEeC----CCC---cEEEEecccCeE------------------EeeeCCEEEEEEecCC--CeEEEEeCCCcEEE
Q 043942 141 GVTCLSWP----GTS---KYLVTGCVDGKV------------------DGHIDAIQSLSVSAIR--ESLVSVSVDGTARV 193 (216)
Q Consensus 141 ~v~~~~~~----~~~---~~l~~~~~~~~i------------------~~~~~~i~~~~~~~~~--~~l~s~~~d~~v~v 193 (216)
..++++.. .++ ..++.|+.+|.+ .....+|..+.++++. .+|..++.++.++|
T Consensus 398 ~~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 398 NYTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred ceEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 35666652 333 367788889887 1123578889999887 88888887776655
No 375
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=24.71 E-value=1.1e+02 Score=17.91 Aligned_cols=72 Identities=7% Similarity=0.023 Sum_probs=37.0
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEECCCCc----eEEEEeCCCCcccCcEEEEEECCCcceeee-eeccCCCeeEEEE
Q 043942 16 SFSSLAFSTDGQLLASGGFHGLVQNRDTSSRN----LQCTVEGPRGGIEDSTVWMWNADRGAYLNM-FSGHGSGLTCGDF 90 (216)
Q Consensus 16 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~v~i~d~~~~~~~~~-~~~~~~~v~~~~~ 90 (216)
....+.+.++|++.+.-. .-.+|...+.. ....+. .+|.+.++| . +..+-. ..........+.+
T Consensus 19 ~~~~L~~~~dgnlvl~~~---~~~vW~sn~~~~~~~~~l~l~------~~GNLvl~d-~-~~~~W~S~~~~~~g~~~l~l 87 (112)
T 1xd5_A 19 GGYLFIIQNDCNLVLYDN---NRAVWASGTNGKASGCVLKMQ------NDGNLVIYS-G-SRAIWASNTNRQNGNYYLIL 87 (112)
T ss_dssp TTEEEEECTTSCEEEEET---TEEEEECCCTTSCSSEEEEEC------TTSCEEEEE-T-TEEEEECCCCCSCCCCEEEE
T ss_pred CCEEEEEcCCCcEEEEEC---CEEEEeCCCcCCCCCEEEEEe------CCCCEEEEc-C-CEEEEECCccCCCCCEEEEE
Confidence 345677888887765432 34678766432 122222 678888888 3 333322 2212122234555
Q ss_pred cCCCcEEE
Q 043942 91 TTDGKTIC 98 (216)
Q Consensus 91 ~~~~~~l~ 98 (216)
.++|.+++
T Consensus 88 ~~dGnlvl 95 (112)
T 1xd5_A 88 QRDRNVVI 95 (112)
T ss_dssp CTTSCEEE
T ss_pred eCCCcEEE
Confidence 55555443
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=24.24 E-value=1.9e+02 Score=20.40 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=52.6
Q ss_pred CCeeEEEEcCCCcEEEEecCCCeEEEEeCCCCce-------eEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEE
Q 043942 83 SGLTCGDFTTDGKTICTGSDNATLSIWNPKGGEN-------FHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLV 155 (216)
Q Consensus 83 ~~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 155 (216)
..+..+........++..+..|.+..+....-.. +..+.. ...+.|..+...+++..++
T Consensus 116 D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L--------------~~~d~vv~~~~~~~~~~ll 181 (276)
T 3no0_A 116 DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL--------------EKNDETSGLRIWNGEPYLL 181 (276)
T ss_dssp CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--------------CTTCCEEEEEEESSCSEEE
T ss_pred CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc--------------CCCCEEEEEEEeCCCCEEE
Confidence 3444444444555677777888877776532111 111100 0234455554444456777
Q ss_pred EecccCeE--------------------EeeeCCEEEEEEecCCCeEEEEeCCCcEEE--EEccc
Q 043942 156 TGCVDGKV--------------------DGHIDAIQSLSVSAIRESLVSVSVDGTARV--FEIAE 198 (216)
Q Consensus 156 ~~~~~~~i--------------------~~~~~~i~~~~~~~~~~~l~s~~~d~~v~v--w~~~~ 198 (216)
..+.+|.. ......+..+....+...++..+.+|.+.. ++..+
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 77777766 011233444433333345555666777777 76654
No 377
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=22.79 E-value=3.2e+02 Score=22.41 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=49.6
Q ss_pred CeeEEEEcCCCcEEEEecCCCeEEEEeCCCCceeEEeecccccccccceEEEeeeecCeEEEEeCCCCcEEEEecccCeE
Q 043942 84 GLTCGDFTTDGKTICTGSDNATLSIWNPKGGENFHAIRRSSLEFSLNYWMICTSLYDGVTCLSWPGTSKYLVTGCVDGKV 163 (216)
Q Consensus 84 ~v~~~~~~~~~~~l~t~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~i 163 (216)
.|.++...+++..|..|+. +-+..+|..+++....... ....|.++...++|.+.+. +.+|..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l---------------~~~~i~~i~~d~~g~lWig-T~~Gl~ 254 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF---------------HNNSIKSLALDGNGDLLAG-TDNGLY 254 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEE---------------EEEEEEEEEECTTCCEEEE-ETTEEE
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCC---------------CCCeEEEEEEcCCCCEEEE-eCCcee
Confidence 4788888777765555554 4588889876653221111 2345777777777765443 344433
Q ss_pred -----------Ee---------eeCCEEEEEEecCCCeEEEEeCCC
Q 043942 164 -----------DG---------HIDAIQSLSVSAIRESLVSVSVDG 189 (216)
Q Consensus 164 -----------~~---------~~~~i~~~~~~~~~~~l~s~~~d~ 189 (216)
.. ....|.++..+.+|.+-+ |+..|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G 299 (758)
T 3ott_A 255 VYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG 299 (758)
T ss_dssp EECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred EEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence 00 113477777777776443 33344
No 378
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=21.22 E-value=25 Score=26.87 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=13.1
Q ss_pred EEeCCCcEEEEEcccccce
Q 043942 184 SVSVDGTARVFEIAEFRRA 202 (216)
Q Consensus 184 s~~~d~~v~vw~~~~~~~~ 202 (216)
.+..+|.|+|||+++.+.+
T Consensus 162 ~~~~~GVVrvWDVkd~slL 180 (577)
T 3mwp_A 162 RAGRDGVVRVWDVKNAELL 180 (577)
T ss_dssp ----CCEECSEECSCGGGG
T ss_pred CCCCCCeEEEEecCCHHHH
Confidence 4567899999999987654
Done!