BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043943
(775 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 166/558 (29%), Positives = 236/558 (42%), Gaps = 39/558 (6%)
Query: 101 PQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXX 160
P + LQ+LD+S NKLSG I + L L++ SN G IP
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 271
Query: 161 XXXXXXXXGYIPPVI-GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
G IP + G +L+ LDLS N G+VP F G+ + L +L L +N+ SG +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 220 P-STLGKLKCLSNLNMSMNHLSGAIPSSIGNV-RNLRSLFLYSNELSGSI-PKEIGNLR- 275
P TL K++ L L++S N SG +P S+ N+ +L +L L SN SG I P N +
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 276 SLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNL 335
+L L L N G IP G+IP +G+L L DL+L +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 336 TGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
G IP + +L+G IP + N L + L N G IPK L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
NL ++++ N+ SGNI A +G +L +LDL+ N F+G I + F Q G + + N
Sbjct: 512 NLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKI--AANF 566
Query: 456 ITGSIPPEIGNSSKLQVLNLSSN--HIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXX 513
I G I N + + + N G +L R G
Sbjct: 567 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 514 XXXXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXX 573
N LS IP +G++ + LNL +N+ S
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-------------------- 666
Query: 574 XNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
G IP ++ ++ L L+LS N+L G IP + L+ ID+S N L GP+P
Sbjct: 667 -----GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 634 AFRDAPAEALQGNRGLCG 651
F P N GLCG
Sbjct: 722 QFETFPPAKFLNNPGLCG 739
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 209/509 (41%), Gaps = 86/509 (16%)
Query: 97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGXXX 155
G IPP L LQYL L+ NK +G+IP + G L+ L L N G++P G
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 156 XXXXXXXXXXXXXGYIP-PVIGNLISLSTLDLSLNQLIGSVPFFLGNLT----------- 203
G +P + + L LDLS N+ G +P L NL+
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 204 ----------------NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI 247
L L+L NN +G IP TL L +L++S N+LSG IPSS+
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 248 GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPXXXXXXXXXXXXXXX 307
G++ LR L L+ N L G IP+E+ +++L L L N L G IP
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 308 XXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAI 367
G IPK IG L+ L L+LS N+ +G IP+ +G +G+IP A+
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 368 GNLVELVSLLLGFNYFR--GPIPKNFKNLTNLVRVRMN----QNNLSGNISEAFVGT--- 418
F+ G I NF V ++ + + + +GN+ E F G
Sbjct: 556 ---------------FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE-FQGIRSE 599
Query: 419 ----YPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLN 474
T + +++ + G S + + LD S N ++G IP EIG+ L +LN
Sbjct: 600 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 659
Query: 475 LSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPG 534
L N I G IP E+G N+L IP
Sbjct: 660 LGHNDISGSIPDEVGD------------------------LRGLNILDLSSNKLDGRIPQ 695
Query: 535 SLGNLLKVHYLNLSNNEFSHKIPT--QFE 561
++ L + ++LSNN S IP QFE
Sbjct: 696 AMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 171/393 (43%), Gaps = 57/393 (14%)
Query: 102 QISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXX 161
+S+ L++LD+S+N S IP +G S L L + N L+G ++
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA----------- 239
Query: 162 XXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPS 221
I L L++S NQ +G +P L +L L L N +G IP
Sbjct: 240 -------------ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 284
Query: 222 TL-GKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKE-IGNLRSLSN 279
L G L+ L++S NH GA+P G+ L SL L SN SG +P + + +R L
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 280 LDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKC-LFDLELSMNNLTGV 338
LDLS N +G +P+ + NL L L+LS NN +G
Sbjct: 345 LDLSFNEFSG------------------------ELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 339 IPSSIGXXXXXXXXXXXXXE--LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
I ++ +G IP + N ELVSL L FNY G IP + +L+
Sbjct: 381 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
L +++ N L G I + + TL L L N+ G+I S L + S N +
Sbjct: 441 LRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELG 489
TG IP IG L +L LS+N G IP ELG
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 164/612 (26%), Positives = 242/612 (39%), Gaps = 84/612 (13%)
Query: 11 EEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSL 70
E L+ +K L ++LLP W ++ KN C + G+ C D++V I+L++ L
Sbjct: 9 REIHQLISFKDVLP--DKNLLPDW------SSNKNPCTFDGVTC-RDDKVTSIDLSSKPL 59
Query: 71 NGTXXXXXXXXXXXXXXXXXXXXXXXGIIPPQISQLFK----LQYLDLSANKLSGKIP-- 124
N I +S FK L LDLS N LSG +
Sbjct: 60 N--VGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTL 116
Query: 125 PEIGQLSFLSELSLYSNCLN--GSIPQSLGXXXXXXXXXXXXXXXXGYIPPVIGNLIS-- 180
+G S L L++ SN L+ G + L V+G ++S
Sbjct: 117 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN---VVGWVLSDG 173
Query: 181 ---LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
L L +S N++ G V + NL L + +N+ S IP LG L +L++S N
Sbjct: 174 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 230
Query: 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPXXXXX 297
LSG +I L+ L + SN+ G IP L+SL L L+ N+ G IP
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS- 287
Query: 298 XXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXX 357
G L L+LS N+ G +P G
Sbjct: 288 ----------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 358 ELSGSIP-QAIGNLVELVSLLLGFNYFRGPIPKNFKNLT-NLVRVRMNQNNLSGNISEAF 415
SG +P + + L L L FN F G +P++ NL+ +L+ + ++ NN SG I
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 416 VGTYP-TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLN 474
TL L L +N F G+I +L +L S N ++G+IP +G+ SKL+ L
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 475 LSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPG 534
L N + G+IP EL G NRL+ IP
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 535 SLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKL 594
+G L + L LSNN FS G IP+++ + SL+ L
Sbjct: 506 WIGRLENLAILKLSNNSFS-------------------------GNIPAELGDCRSLIWL 540
Query: 595 NLSYNQLSGFIP 606
+L+ N +G IP
Sbjct: 541 DLNTNLFNGTIP 552
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 177/432 (40%), Gaps = 75/432 (17%)
Query: 212 NNSLSGFIPSTLGKLKC---LSNLNMSMNHLSGAIPS--SIGNVRNLRSLFLYSNELSGS 266
N S+SGF KC L++L++S N LSG + + S+G+ L+ L + SN L
Sbjct: 87 NGSVSGF--------KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 136
Query: 267 IPKEIG---NLRSLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLK 323
P ++ L SL LDLS N ++G I ++ +
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVSR 195
Query: 324 C--LFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFN 381
C L L++S NN + IP +G +LSG +AI EL L + N
Sbjct: 196 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 382 YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWG 441
F GPIP L +L + + +N +G I + G TL+ LDLS N+F+G + +G
Sbjct: 255 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 442 RFPQLGTLDFSVNNITGSIPPE-IGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXX 500
L +L S NN +G +P + + L+VL+LS
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS------------------------ 348
Query: 501 XXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNL-LKVHYLNLSNNEFSHKI-PT 558
N S +P SL NL + L+LS+N FS I P
Sbjct: 349 ------------------------FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 559 QFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSI 618
+ N G+IP + N LV L+LS+N LSG IP+ + L +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 619 DISYNRLQGPVP 630
+ N L+G +P
Sbjct: 445 KLWLNMLEGEIP 456
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 89/237 (37%), Gaps = 55/237 (23%)
Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
L + ++ N +SG++ V L FLD+S NNF I G L LD S N +
Sbjct: 177 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
+G I ++L++LN+SSN G IP
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIP------------------------------- 261
Query: 517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
+P L + YL+L+ N+F+ +IP N
Sbjct: 262 --------------PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 302
Query: 577 LEGEIPSQICNMESLVKLNLSYNQLSGFIP-NCFEDMHGLSSIDISYNRLQGPVPFS 632
G +P + L L LS N SG +P + M GL +D+S+N G +P S
Sbjct: 303 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 166/558 (29%), Positives = 236/558 (42%), Gaps = 39/558 (6%)
Query: 101 PQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXX 160
P + LQ+LD+S NKLSG I + L L++ SN G IP
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYL 274
Query: 161 XXXXXXXXGYIPPVI-GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219
G IP + G +L+ LDLS N G+VP F G+ + L +L L +N+ SG +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 220 P-STLGKLKCLSNLNMSMNHLSGAIPSSIGNV-RNLRSLFLYSNELSGSI-PKEIGNLR- 275
P TL K++ L L++S N SG +P S+ N+ +L +L L SN SG I P N +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 276 SLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNL 335
+L L L N G IP G+IP +G+L L DL+L +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 336 TGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395
G IP + +L+G IP + N L + L N G IPK L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455
NL ++++ N+ SGNI A +G +L +LDL+ N F+G I + F Q G + + N
Sbjct: 515 NLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNLFNGTIPA--AMFKQSGKI--AANF 569
Query: 456 ITGSIPPEIGNSSKLQVLNLSSN--HIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXX 513
I G I N + + + N G +L R G
Sbjct: 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 514 XXXXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXX 573
N LS IP +G++ + LNL +N+ S
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-------------------- 669
Query: 574 XNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633
G IP ++ ++ L L+LS N+L G IP + L+ ID+S N L GP+P
Sbjct: 670 -----GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 634 AFRDAPAEALQGNRGLCG 651
F P N GLCG
Sbjct: 725 QFETFPPAKFLNNPGLCG 742
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 146/509 (28%), Positives = 209/509 (41%), Gaps = 86/509 (16%)
Query: 97 GIIPPQISQLFKLQYLDLSANKLSGKIPPEI-GQLSFLSELSLYSNCLNGSIPQSLGXXX 155
G IPP L LQYL L+ NK +G+IP + G L+ L L N G++P G
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 156 XXXXXXXXXXXXXGYIP-PVIGNLISLSTLDLSLNQLIGSVPFFLGNLT----------- 203
G +P + + L LDLS N+ G +P L NL+
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 204 ----------------NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI 247
L L+L NN +G IP TL L +L++S N+LSG IPSS+
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 248 GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPXXXXXXXXXXXXXXX 307
G++ LR L L+ N L G IP+E+ +++L L L N L G IP
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 308 XXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAI 367
G IPK IG L+ L L+LS N+ +G IP+ +G +G+IP A+
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 368 GNLVELVSLLLGFNYFR--GPIPKNFKNLTNLVRVRMN----QNNLSGNISEAFVGT--- 418
F+ G I NF V ++ + + + +GN+ E F G
Sbjct: 559 ---------------FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE-FQGIRSE 602
Query: 419 ----YPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLN 474
T + +++ + G S + + LD S N ++G IP EIG+ L +LN
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662
Query: 475 LSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPG 534
L N I G IP E+G N+L IP
Sbjct: 663 LGHNDISGSIPDEVGD------------------------LRGLNILDLSSNKLDGRIPQ 698
Query: 535 SLGNLLKVHYLNLSNNEFSHKIPT--QFE 561
++ L + ++LSNN S IP QFE
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 121/393 (30%), Positives = 171/393 (43%), Gaps = 57/393 (14%)
Query: 102 QISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXX 161
+S+ L++LD+S+N S IP +G S L L + N L+G ++
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA----------- 242
Query: 162 XXXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPS 221
I L L++S NQ +G +P L +L L L N +G IP
Sbjct: 243 -------------ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287
Query: 222 TL-GKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKE-IGNLRSLSN 279
L G L+ L++S NH GA+P G+ L SL L SN SG +P + + +R L
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 280 LDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKC-LFDLELSMNNLTGV 338
LDLS N +G +P+ + NL L L+LS NN +G
Sbjct: 348 LDLSFNEFSG------------------------ELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 339 IPSSIGXXXXXXXXXXXXXE--LSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396
I ++ +G IP + N ELVSL L FNY G IP + +L+
Sbjct: 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
L +++ N L G I + + TL L L N+ G+I S L + S N +
Sbjct: 444 LRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELG 489
TG IP IG L +L LS+N G IP ELG
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 164/612 (26%), Positives = 242/612 (39%), Gaps = 84/612 (13%)
Query: 11 EEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSL 70
E L+ +K L ++LLP W ++ KN C + G+ C D++V I+L++ L
Sbjct: 12 REIHQLISFKDVLP--DKNLLPDW------SSNKNPCTFDGVTC-RDDKVTSIDLSSKPL 62
Query: 71 NGTXXXXXXXXXXXXXXXXXXXXXXXGIIPPQISQLFK----LQYLDLSANKLSGKIP-- 124
N I +S FK L LDLS N LSG +
Sbjct: 63 N--VGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTL 119
Query: 125 PEIGQLSFLSELSLYSNCLN--GSIPQSLGXXXXXXXXXXXXXXXXGYIPPVIGNLIS-- 180
+G S L L++ SN L+ G + L V+G ++S
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN---VVGWVLSDG 176
Query: 181 ---LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
L L +S N++ G V + NL L + +N+ S IP LG L +L++S N
Sbjct: 177 CGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 233
Query: 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPXXXXX 297
LSG +I L+ L + SN+ G IP L+SL L L+ N+ G IP
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLS- 290
Query: 298 XXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXX 357
G L L+LS N+ G +P G
Sbjct: 291 ----------------------GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 358 ELSGSIP-QAIGNLVELVSLLLGFNYFRGPIPKNFKNLT-NLVRVRMNQNNLSGNISEAF 415
SG +P + + L L L FN F G +P++ NL+ +L+ + ++ NN SG I
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 416 VGTYP-TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLN 474
TL L L +N F G+I +L +L S N ++G+IP +G+ SKL+ L
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 475 LSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPG 534
L N + G+IP EL G NRL+ IP
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 535 SLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKL 594
+G L + L LSNN FS G IP+++ + SL+ L
Sbjct: 509 WIGRLENLAILKLSNNSFS-------------------------GNIPAELGDCRSLIWL 543
Query: 595 NLSYNQLSGFIP 606
+L+ N +G IP
Sbjct: 544 DLNTNLFNGTIP 555
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 119/432 (27%), Positives = 177/432 (40%), Gaps = 75/432 (17%)
Query: 212 NNSLSGFIPSTLGKLKC---LSNLNMSMNHLSGAIPS--SIGNVRNLRSLFLYSNELSGS 266
N S+SGF KC L++L++S N LSG + + S+G+ L+ L + SN L
Sbjct: 90 NGSVSGF--------KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-- 139
Query: 267 IPKEIG---NLRSLSNLDLSINRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLK 323
P ++ L SL LDLS N ++G I ++ +
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGA-NVVGWVLSDGCGELKHLAISGNKISGDVDVSR 198
Query: 324 C--LFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGFN 381
C L L++S NN + IP +G +LSG +AI EL L + N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 382 YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWG 441
F GPIP L +L + + +N +G I + G TL+ LDLS N+F+G + +G
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Query: 442 RFPQLGTLDFSVNNITGSIPPE-IGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXX 500
L +L S NN +G +P + + L+VL+LS
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS------------------------ 351
Query: 501 XXXXFGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNL-LKVHYLNLSNNEFSHKI-PT 558
N S +P SL NL + L+LS+N FS I P
Sbjct: 352 ------------------------FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 559 QFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSI 618
+ N G+IP + N LV L+LS+N LSG IP+ + L +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 619 DISYNRLQGPVP 630
+ N L+G +P
Sbjct: 448 KLWLNMLEGEIP 459
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 89/237 (37%), Gaps = 55/237 (23%)
Query: 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNI 456
L + ++ N +SG++ V L FLD+S NNF I G L LD S N +
Sbjct: 180 LKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 457 TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXXFGSXXXXXXXXX 516
+G I ++L++LN+SSN G IP
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIP------------------------------- 264
Query: 517 XXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNF 576
+P L + YL+L+ N+F+ +IP N
Sbjct: 265 --------------PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305
Query: 577 LEGEIPSQICNMESLVKLNLSYNQLSGFIP-NCFEDMHGLSSIDISYNRLQGPVPFS 632
G +P + L L LS N SG +P + M GL +D+S+N G +P S
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Query: 171 IPPVIGNLISLSTLDLS-LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229
IP + NL L+ L + +N L+G +P + LT L L++ + ++SG IP L ++K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSL-SNLDLSINRLN 288
L+ S N LSG +P SI ++ NL + N +SG+IP G+ L +++ +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 289 GVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXX 348
G IP G G+ K + L+ N+L + +G
Sbjct: 188 GKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 349 XXXXXXXXXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPK 389
+ G++PQ + L L SL + FN G IP+
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 89/203 (43%), Gaps = 4/203 (1%)
Query: 169 GYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC 228
G IPP I L L L ++ + G++P FL + LVTL N+LSG +P ++ L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNL-RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL 287
L + N +SGAIP S G+ L S+ + N L+G IP NL +L+ +DLS N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
Query: 288 NGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXX 347
G + K +G K L L+L N + G +P +
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268
Query: 348 XXXXXXXXXXELSGSIPQAIGNL 370
L G IPQ GNL
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNL 290
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 11/224 (4%)
Query: 267 IPKEIGNLRSLSNLDLS-INRLNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIGNLKCL 325
IP + NL L+ L + IN L G IP G+IP + +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 326 FDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVEL-VSLLLGFNYFR 384
L+ S N L+G +P SI +SG+IP + G+ +L S+ + N
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 385 GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRF- 443
G IP F NL NL V +++N L G+ S F G+ + L+ N+ ++ D G+
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLF-GSDKNTQKIHLAKNS----LAFDLGKVG 241
Query: 444 --PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485
L LD N I G++P + L LN+S N++ G+IP
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 107/269 (39%), Gaps = 32/269 (11%)
Query: 386 PIPKNFKNLTNLVRVRMNQ-NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444
PIP + NL L + + NNL G I A + L +L ++H N G I +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRXXXXXXXXXXXXXX 504
L TLDFS N ++G++PP I + L + N I G IP G
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG----------SFSKL 175
Query: 505 FGSXXXXXXXXXXXXXXXXXXNRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQF--EK 562
F S NRL+ IP + N L + +++LS N F +K
Sbjct: 176 FTS-------------MTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 563 XXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISY 622
F G++ ++L L+L N++ G +P + L S+++S+
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 623 NRLQGPVPFSKAFRDAPAEALQGNRGLCG 651
N L G +P + A N+ LCG
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 313 GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVE 372
G IP I L L L ++ N++G IP + LSG++P +I +L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 373 LVSLLLGFNYFRGPIPKNFKNLTNL-VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNN 431
LV + N G IP ++ + + L + +++N L+G I F L+F+DLS N
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNM 208
Query: 432 FHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMEL 488
G S +G + + N++ + ++G S L L+L +N I G +P L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL 264
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN- 233
+ NL L + ++ NQ+ P L NLTNL L LFNN ++ P LK L+NLN
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNR 133
Query: 234 --MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
+S N +S S++ + +L+ L SN+++ P + NL +L LD+S N+++ +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI 188
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 14/188 (7%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
++ L L+ LD+S+NK+S + +L+ L L +N ++ P +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 226
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
G + +L +L+ LDL+ NQ+ P L LT L L L N +S P
Sbjct: 227 NQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
L L L+NL ++ N L P I N++NL L LY N +S P + +L L L
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 334
Query: 283 SINRLNGV 290
S N+++ V
Sbjct: 335 SNNKVSDV 342
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN- 233
+ NL L + ++ NQ+ P L NLTNL L LFNN ++ P LK L+NLN
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNR 133
Query: 234 --MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
+S N +S S++ + +L+ L SN+++ P + NL +L LD+S N+++ +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI 188
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
++ L L+ LD+S+NK+S + +L+ L L +N ++ P +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 226
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
G + +L +L+ LDL+ NQ+ P L LT L L L N +S P
Sbjct: 227 NQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP 268
L L L+NL ++ N L P I N++NL L LY N +S P
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 178 LISLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
L L LDLS N + SV P L L TLHL L P L L L +
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP 292
N L + ++ NL LFL+ N +S + L SL L L NR+ V P
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 24/132 (18%)
Query: 106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXXXXX 165
L LQYL L N L L L+ L L+ N ++ S+P+
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER--------------- 170
Query: 166 XXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGK 225
L SL L L N++ P +L L+TL+LF N+LS L
Sbjct: 171 --------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 222
Query: 226 LKCLSNLNMSMN 237
L+ L L ++ N
Sbjct: 223 LRALQYLRLNDN 234
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 70/197 (35%), Gaps = 2/197 (1%)
Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSIN-RLNGVIPXXX 295
N +S +S RNL L+L+SN L+ L L LDLS N +L V P
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 296 XXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXX 355
P L L L L N L + +
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 356 XXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF 415
+S +A L L LLL N P F++L L+ + + NNLS +EA
Sbjct: 161 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA- 219
Query: 416 VGTYPTLSFLDLSHNNF 432
+ L +L L+ N +
Sbjct: 220 LAPLRALQYLRLNDNPW 236
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 178 LISLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
L L LDLS N + SV P L L TLHL L P L L L +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP 292
N L + ++ NL LFL+ N +S + L SL L L NR+ V P
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 24/132 (18%)
Query: 106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXXXXX 165
L LQYL L N L L L+ L L+ N ++ S+P+
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER--------------- 171
Query: 166 XXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGK 225
L SL L L N++ P +L L+TL+LF N+LS L
Sbjct: 172 --------AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223
Query: 226 LKCLSNLNMSMN 237
L+ L L ++ N
Sbjct: 224 LRALQYLRLNDN 235
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 70/197 (35%), Gaps = 2/197 (1%)
Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSIN-RLNGVIPXXX 295
N +S +S RNL L+L+SN L+ L L LDLS N +L V P
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 296 XXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXX 355
P L L L L N L + +
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 356 XXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF 415
+S +A L L LLL N P F++L L+ + + NNLS +EA
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA- 220
Query: 416 VGTYPTLSFLDLSHNNF 432
+ L +L L+ N +
Sbjct: 221 LAPLRALQYLRLNDNPW 237
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 14/188 (7%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
++ L L+ LD+S+NK+S + +L+ L L +N ++ P +
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 225
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
G + +L +L+ LDL+ NQ+ P L LT L L L N +S P
Sbjct: 226 NQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
L L L+NL ++ N L P I N++NL L LY N +S P + +L L L
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 333
Query: 283 SINRLNGV 290
S N+++ V
Sbjct: 334 SNNKVSDV 341
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
+ NL L + ++ NQ+ P L NLTNL L LFNN ++ P LK L+NLN
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNR 133
Query: 235 SMNHLSGAIPSSIGNVRNLRSL--FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
LS S I + L SL + N+++ P + NL +L LD+S N+++ +
Sbjct: 134 L--ELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDI 187
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 14/119 (11%)
Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN- 233
+ NL L + ++ NQ+ P L NLTNL L LFNN ++ P LK L+NLN
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNR 133
Query: 234 --MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
+S N +S S++ + +L+ L SN+++ P + NL +L LD+S N+++ +
Sbjct: 134 LELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI 188
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
++ L L+ LD+S+NK+S + +L+ L L +N ++ P +
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 226
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
G + +L +L+ LDL+ NQ+ P L LT L L L N +S P
Sbjct: 227 NQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP 268
L L L+NL ++ N L P I N++NL L LY N +S P
Sbjct: 279 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 14/188 (7%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
++ L L+ LD+S+NK+S + +L+ L L +N ++ P +
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 229
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
G + +L +L+ LDL+ NQ+ P L LT L L L N +S P
Sbjct: 230 NQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 281
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
L L L+NL ++ N L P I N++NL L LY N +S P + +L L L
Sbjct: 282 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 337
Query: 283 SINRLNGV 290
+ N+++ V
Sbjct: 338 ANNKVSDV 345
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
+ NL L + ++ NQ+ P L NLTNL L LFNN ++ P LK L+NLN
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNR 137
Query: 235 SMNHLSGAIPSSIGNVRNLRSL--FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
LS S I + L SL + N+++ P + NL +L LD+S N+++ +
Sbjct: 138 L--ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDI 191
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
++ L L+ LD+S+NK+S + +L+ L L +N ++ P +
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 230
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
G + +L +L+ LDL+ NQ+ P L LT L L L N +S P
Sbjct: 231 NQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP 268
L L L+NL ++ N L P I N++NL L LY N +S P
Sbjct: 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
+ NL L + ++ NQ+ P L NLTNL L LFNN ++ P LK L+NLN
Sbjct: 86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNR 138
Query: 235 SMNHLSGAIPSSIGNVRNLRSL--FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
LS S I + L SL + N+++ P + NL +L LD+S N+++ +
Sbjct: 139 L--ELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDI 192
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
++ L L+ LD+S+NK+S + +L+ L L +N ++ P +
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 225
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
G + +L +L+ LDL+ NQ+ P L LT L L L N +S P
Sbjct: 226 NQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP 268
L L L+NL ++ N L P I N++NL L LY N +S P
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 13/118 (11%)
Query: 175 IGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNM 234
+ NL L + ++ NQ+ P L NLTNL L LFNN ++ P LK L+NLN
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-----LKNLTNLNR 133
Query: 235 SMNHLSGAIPSSIGNVRNLRSL--FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
LS S I + L SL + N+++ P + NL +L LD+S N+++ +
Sbjct: 134 L--ELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDI 187
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243
L L NQ+ P +L NL L+L +N L L L+ L++ N L+ +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VL 103
Query: 244 PSSI-GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
PS++ + +L+ LF+ N+L+ +P+ I L L++L L N+L +
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 25/152 (16%)
Query: 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXXXXXXXXG 169
Q L L N+++ P L L EL L SN L G++P
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVG------------------- 82
Query: 170 YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229
V +L L+ LDL NQL L +L L + N L+ +P + +L L
Sbjct: 83 ----VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHL 137
Query: 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
++L + N L + + +L +L+ N
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS 245
L+ NQ+ P +L NL L+ +N L+ KL L+ L+++ NHL
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 246 SIGNVRNLRSLFLYSN 261
+ N+++L ++LY+N
Sbjct: 100 AFDNLKSLTHIYLYNN 115
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V L +L L L NQL LTNL L+L +N L KL L+ L+
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIP 292
+S N L + L+ L LY N+L S+P + L SL + L N + P
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 73/189 (38%), Gaps = 31/189 (16%)
Query: 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGXXXXXXXXXX 162
+ +L L YL L+ N+L +L+ L EL L N L S+P
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDG------------ 127
Query: 163 XXXXXXGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPST 222
V L +L+ L+L+ NQL LTNL L L N L
Sbjct: 128 -----------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 223 LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
KL L +L + N L + +L+ ++L+ N + P +R LS
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEW-- 230
Query: 283 SINRLNGVI 291
IN+ +GV+
Sbjct: 231 -INKHSGVV 238
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
+ L +L+ L L+ NQL LTNL L L N L KL L+ LN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGV 290
++ N L + NL L L N+L S+P+ + L L +L L N+L V
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 588 MESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
+ +L LNL++NQL F+ + L+ +D+SYN+LQ
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL 446
+P F L NL + ++Q L AF + +L L++SHNNF + + L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225
Query: 447 GTLDFSVNNITGSIPPEIGN-SSKLQVLNLSSNHIG 481
LD+S+N+I S E+ + S L LNL+ N
Sbjct: 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 370 LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSH 429
L L+ L + + R F L++L ++M N+ N L+FLDLS
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 430 NNFHGQISSDWGRFPQLGTLDFSVNNI--TGSIPPEIGNSSKLQVLNLSSNHIGGKIPME 487
+ + L L+ S NN + P + NS LQVL+ S NHI E
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQE 242
Query: 488 L 488
L
Sbjct: 243 L 243
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL 446
+P F L NL + ++Q L AF + +L L++SHNNF + + L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 447 GTLDFSVNNITGSIPPEIGN-SSKLQVLNLSSNHIG 481
LD+S+N+I S E+ + S L LNL+ N
Sbjct: 521 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 391 FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLD 450
F L++L ++M N+ N L+FLDLS + + L L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 451 FSVNNI--TGSIPPEIGNSSKLQVLNLSSNHIGGKIPMEL 488
S NN + P + NS LQVL+ S NHI EL
Sbjct: 501 MSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQEL 538
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 387 IPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL 446
+P F L NL + ++Q L AF + +L L++SHNNF + + L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Query: 447 GTLDFSVNNITGSIPPEIGN-SSKLQVLNLSSNHIG 481
LD+S+N+I S E+ + S L LNL+ N
Sbjct: 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 370 LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSH 429
L L+ L + + R F L++L ++M N+ N L+FLDLS
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 430 NNFHGQISSDWGRFPQLGTLDFSVNNI--TGSIPPEIGNSSKLQVLNLSSNHIGGKIPME 487
+ + L L+ S NN + P + NS LQVL+ S NHI E
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQE 561
Query: 488 L 488
L
Sbjct: 562 L 562
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 179 ISLSTLDLSLNQLIGSVPFFLG--NLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
ISL LDLS N +I FLG L +L H +S F S L+ L L++S
Sbjct: 397 ISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISH 454
Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGS-IPKEIGNLRSLSNLDLSINRLNGVIP 292
H A + +L L + N + +P LR+L+ LDLS +L + P
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 199 LGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFL 258
L LTNL L L N L KL L L + N L + NL L+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 259 YSNELSGSIPKEI-GNLRSLSNLDLSINRLNGV 290
Y N+L S+PK + L +L+ LDL N+L +
Sbjct: 141 YHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSL 172
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V L +L L L NQL LTNL L+L++N L KL L+ L+
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNL 280
+ N L + L+ L L N+L S+P + L SL+++
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHI 210
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
+ L +L+ L L+ NQL LTNL L L N L KL L+ L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGV 290
+ N L + NL L L +N+L S+P+ + L L L L+ N+L V
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSV 196
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
V +L L TL L+ NQL S+P +LT L L+L N L +L L L
Sbjct: 78 VFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP----KEIGNLRSLS 278
++ N L + + NL++L L +N+L S+P +G L++++
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 178 LISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
L L+ L+L NQL +LT L TL L NN L+ L L L + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 238 HLSGAIPSSI-GNVRNLRSLFLYSNELSGSIPK-EIGNLRSLSNLDLSINRLNGV 290
L ++PS + + L+ L L +N+L SIP L +L L LS N+L V
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232
V +L L TL L+ NQL S+P +LT L L+L N L +L L L
Sbjct: 78 VFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP----KEIGNLRSLS 278
++ N L + + NL++L L +N+L S+P +G L++++
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTIT 185
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 178 LISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237
L L+ L+L NQL +LT L TL L NN L+ L L L + N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 238 HLSGAIPSSI-GNVRNLRSLFLYSNELSGSIPK-EIGNLRSLSNLDLSINRLNGV 290
L ++PS + + L+ L L +N+L SIP L +L L LS N+L V
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV 170
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
I PV N L++L + N++ P L NL+ L L + N +S + + L L
Sbjct: 214 ITPV-ANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLK 268
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
LN+ N +S S + N+ L SLFL +N+L + IG L +L+ L LS N + +
Sbjct: 269 XLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Query: 291 IP 292
P
Sbjct: 327 RP 328
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 119/289 (41%), Gaps = 28/289 (9%)
Query: 202 LTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
LTNL L+L N ++ P L L L+NL + N ++ S++ N+ NLR L+L +
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 262 ELSGSIPKEIGNLRSLSNLDLSINR-LNGVIPXXXXXXXXXXXXXXXXXXXXGSIPKEIG 320
+S P + NL +L+L N L+ + P I
Sbjct: 121 NISDISP--LANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDV----TPIA 174
Query: 321 NLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXXXXELSGSIPQAIGNLVELVSLLLGF 380
NL L+ L L+ N + + P + +++ P + N L SL +G
Sbjct: 175 NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGN 230
Query: 381 NYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQIS--S 438
N P NL+ L + + N +S +I+ V L L++ N QIS S
Sbjct: 231 NKITDLSP--LANLSQLTWLEIGTNQIS-DINA--VKDLTKLKXLNVGSN----QISDIS 281
Query: 439 DWGRFPQLGTLDFSVNNITGSIPPE-IGNSSKLQVLNLSSNHIGGKIPM 486
QL +L F NN G+ E IG + L L LS NHI P+
Sbjct: 282 VLNNLSQLNSL-FLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRPL 329
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 46/117 (39%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
+ L +L TL ++ N+L L NL L L N L P L L+ L+
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
+ N L + +L+ L LY+N+L L L L L N+L V
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%)
Query: 172 PPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
P V +L L+ L L N+L LT+L L L+NN L KL L
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
L + N L + ++ L+ L L N
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNFLEGEIPSQI 585
N+LS+ + L K+ L L++N+ +P K N L+
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105
Query: 586 CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
+ +L +L L NQL P F+ + L+ + + YN LQ
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 176 GNLISLSTLDLSLNQL--IGSVPFFLGNLTNLVTLHLFNNSLS-GFIPSTLGKLKCLSNL 232
G+L L TL L +NQL + + + +L L + NS+S K L +L
Sbjct: 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
NMS N L+ I + ++ L L+SN++ SIPK++ L +L L+++ N+L V
Sbjct: 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSV 459
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 359 LSGSIPQAIGNLVELVSLLLGFNYFR--GPIPKNFKNLTNLVRVRMNQNNLSGNISEAFV 416
L+ ++ + G+L EL +L+L N + I + + +L ++ ++QN++S + +
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 417 GTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLS 476
+L L++S N I P++ LD N I SIP ++ LQ LN++
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFR--CLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVA 452
Query: 477 SNHIGG 482
SN +
Sbjct: 453 SNQLKS 458
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 178 LISLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236
L L LDLS N + V P L +L TLHL L P L L L +
Sbjct: 78 LTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP 292
N+L ++ ++ NL LFL+ N + L SL L L N + V P
Sbjct: 138 NNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 172 PPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN 231
P + L +L L L N L +L NL L L N + L L
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 232 LNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSIN 285
L + NH++ P + ++ L +L+L++N LS +P E+ LRSL L L+ N
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDN 234
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 73/197 (37%), Gaps = 2/197 (1%)
Query: 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSIN-RLNGVIPXXX 295
N +S +S + RNL L+L+SN L+G L L LDLS N +L V P
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 296 XXXXXXXXXXXXXXXXXGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGXXXXXXXXXXX 355
P L L L L NNL + ++
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH 160
Query: 356 XXELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF 415
+ A L L LLL N+ P F++L L+ + + NNLS +E
Sbjct: 161 GNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVL 220
Query: 416 VGTYPTLSFLDLSHNNF 432
V +L +L L+ N +
Sbjct: 221 VPLR-SLQYLRLNDNPW 236
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 192 IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251
+ SVP + T + LHL+ N ++ P L L+ LN+++N L+ +
Sbjct: 31 LASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 252 NLRSLFLYSNELSGSIPKEI-GNLRSLSNLDL 282
L L L+ N+L SIP + NL+SL+++ L
Sbjct: 89 KLTHLALHINQLK-SIPMGVFDNLKSLTHIYL 119
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243
LDL N L LT+L L+L N L KL L+ LN+S N L
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 244 PSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGV 290
+ L+ L L +N+L S+P + L L +L L N+L V
Sbjct: 93 NGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V L SL+ L L N+L LT+L L+L N L KL L L
Sbjct: 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIP 292
++ N L + L+ L LY N+L S+P + L SL + L N + P
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 370 LVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLS 428
L L +L + N F+ N F N TNL + +++ L IS T L L++S
Sbjct: 442 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMS 500
Query: 429 HNNFHGQISSDWGRFPQLGTLDFSVNNITGS 459
HNN SS + + L TLD S N I S
Sbjct: 501 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 531
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 370 LVELVSLLLGFNYFRGPIPKN-FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLS 428
L L +L + N F+ N F N TNL + +++ L IS T L L++S
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMS 505
Query: 429 HNNFHGQISSDWGRFPQLGTLDFSVNNITGS 459
HNN SS + + L TLD S N I S
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 434 GQISSD--WGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHI 480
G+ISSD +GR P L L+ N +TG P +S +Q L L N I
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
+ G L L L+L NQL G P +++ L L N + L L LN
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSN 261
+ N +S +P S ++ +L SL L SN
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 591 LVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626
LVKL L NQL+G PN FE + + + N+++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 391 FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLD 450
F L +LV++ + +N L+G AF G + L L N + + QL TL+
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 451 FSVNNITGSIPPEIGNSSKLQVLNLSSN 478
N I+ +P + + L LNL+SN
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 210 LFNNSLSGFIPST--LGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267
L N++ G I S G+L L L + N L+G P++ +++ L L N++
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS 94
Query: 268 PKEIGNLRSLSNLDLSINRLNGVIP 292
K L L L+L N+++ V+P
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 170 YIPP-VIGNLISLSTLDLSLNQLIGSVPFFL-GNLTNLVTLHLFNNSLSGFIPSTLGKLK 227
+IP ++ ++ +LS L+L N I +P L +L NL ++ +N L GK+
Sbjct: 137 HIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMP 194
Query: 228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L LN++ N L + +L+ ++L++N S P+
Sbjct: 195 KLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
+T+D S + + SVP + T + L+L++N ++ P +L L+ L++ N L+
Sbjct: 12 TTVDCS-GKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPK-EIGNLRSLSNLDL 282
+ L L L N+L SIP+ NLRSL+++ L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSLTHIWL 109
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
N++ P LT L L L NN L+ KL L+ L+++ N L +
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 249 NVRNLRSLFLYSN 261
N+R+L ++L +N
Sbjct: 100 NLRSLTHIWLLNN 112
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N+L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N+L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 736 ATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKK 769
ATN+FD ++ IG G G +YK L+ +A+K+
Sbjct: 37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 736 ATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKK 769
ATN+FD ++ IG G G +YK L+ +A+K+
Sbjct: 37 ATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N+L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N+L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N+L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
+T+D S + + SVP + T + L+L++N ++ P +L L+ L++ N L+
Sbjct: 20 TTVDCS-GKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPK-EIGNLRSLSNLDL 282
+ L L L N+L SIP+ NL+SL+++ L
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWL 117
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
NQ+ P LT L L L NN L+ KL L+ L+++ N L +
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Query: 249 NVRNLRSLFLYSN 261
N+++L ++L +N
Sbjct: 108 NLKSLTHIWLLNN 120
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N+L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPA--GLLNGLENLD 175
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N+L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241
+T+D S + + SVP + T + L+L++N ++ P +L L+ L++ N L+
Sbjct: 12 TTVDCS-GKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 242 AIPSSIGNVRNLRSLFLYSNELSGSIPK-EIGNLRSLSNLDL 282
+ L L L N+L SIP+ NL+SL+++ L
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWL 109
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248
NQ+ P LT L L L NN L+ KL L+ L+++ N L +
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99
Query: 249 NVRNLRSLFLYSN 261
N+++L ++L +N
Sbjct: 100 NLKSLTHIWLLNN 112
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 420 PT-LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN 478
PT ++ L+L+HN ++++ R+ QL +LD N I+ P L+VLNL N
Sbjct: 29 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 88
Query: 479 HIG 481
+
Sbjct: 89 ELS 91
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 420 PT-LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN 478
PT ++ L+L+HN ++++ R+ QL +LD N I+ P L+VLNL N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 479 HIG 481
+
Sbjct: 84 ELS 86
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 420 PT-LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN 478
PT ++ L+L+HN ++++ R+ QL +LD N I+ P L+VLNL N
Sbjct: 34 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 93
Query: 479 HIG 481
+
Sbjct: 94 ELS 96
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 94 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N+L+ + + NL +L L N L +IPK
Sbjct: 153 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 190
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 73 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N L+ +P G L L NLD
Sbjct: 132 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 176
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N+L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPA--GLLNGLENLD 175
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 173 PVIGN-LISLSTLDLSLNQLIGSVPF-FLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
P++G L +L+ LD+S N+L S+P L L L L+L N L P L L
Sbjct: 93 PLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPK 269
L+++ N+L+ + + NL +L L N L +IPK
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233
V G L L TLDLS NQL S+P L L L + N L+ L L L L
Sbjct: 72 VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLD 281
+ N L P + L L L +N L+ +P G L L NLD
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLENLD 175
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 180 SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239
S+ L+LS N L GSV L ++ LH NN + IP + L+ L LN++ N L
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLH--NNRIMS-IPKDVTHLQALQELNVASNQL 485
Query: 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI 291
+ +L+ ++L+ N + P +R LS IN+ +GV+
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEW---INKHSGVV 530
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 176 GNLISLSTLDLSLNQL--IGSVPFFLGNLTNLVTLHLFNNSL-SGFIPSTLGKLKCLSNL 232
L L TL L N L V N+++L TL + NSL S T + + L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
N+S N L+G++ + ++ L L++N + SIPK++ +L++L L+++ N+L V
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSV 488
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 359 LSGSIPQAIGNLVELVSLLLGFN----YFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEA 414
+ S+ Q L L +L+L N +F+ + KN+++L + ++ N+L+ + +
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT--KNMSSLETLDVSLNSLNSHAYDR 422
Query: 415 FVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLN 474
++ L+LS N G + P++ LD NN SIP ++ + LQ LN
Sbjct: 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLH-NNRIMSIPKDVTHLQALQELN 479
Query: 475 LSSNHIGG 482
++SN +
Sbjct: 480 VASNQLKS 487
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 190 QLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS--GAIPSSI 247
Q + + FF TNL LHL +N +S P L L L L+++ N L IPS+
Sbjct: 54 QSLAGMQFF----TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSAC 107
Query: 248 GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI 291
L LFL +NEL + + +L++L L + N+L ++
Sbjct: 108 -----LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV 144
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 421 TLSFLDLSHNNFHGQISSDWG------RFPQLGTLDFSVNNITGSIPPEIGNS-SKLQVL 473
TLSF L+ N+ + ++S DWG R L LD S N T I N+ SK Q
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234
Query: 474 NLS-SNHIGG 482
+L ++HI G
Sbjct: 235 SLILAHHIMG 244
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 391 FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLD 450
F+ L +L + + N ++ EAF G L L+LS+N SS++ P++ +D
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 451 FSVNNITGSIPPEIGNSSKLQVLNLSSN 478
N+I KLQ L+L N
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 584 QICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632
Q+ N+ L LNLSYN+ G F++ L +D+++ L P S
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHS 418
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 6/125 (4%)
Query: 171 IPPVIGNLISLSTLDLSLNQL--IGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKC 228
+ V + L L L+ N++ I F+ LT+L+ L+L N L L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDK 348
Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRL 287
L L++S NH+ S + NL+ L L +N+L S+P I L SL + L N
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
Query: 288 NGVIP 292
+ P
Sbjct: 408 DCSCP 412
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 588 MESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG 627
+ L+KLNLS N L FE++ L +D+SYN ++
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
+P I NL +L LDLS N+L S+P LG+ L + F+N ++ +P G L L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQ 319
Query: 231 NLNMSMNHLS 240
L + N L
Sbjct: 320 FLGVEGNPLE 329
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
I ++I L L+L N L+ +P EI NL +L LDLS NRL +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 585 ICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG------PVPFSKAF 635
+ N LV+++LSYN+L + + F M L + IS NRL P+P K
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 581 IPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630
+P ++ N + L ++LS N++S F +M L ++ +SYNRL+ P
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230
+P + N L+ +DLS N++ N+T L+TL L N L P T LK L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL 263
L++ N +S + ++ L L + +N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL 287
CL + N +P I R++ L+L N+ + +PKE+ N + L+ +DLS NR+
Sbjct: 10 CLDTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI 66
Query: 288 N 288
+
Sbjct: 67 S 67
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447
P F+ L NL + ++ NN+ NI+E + L LD HNN ++ W R G
Sbjct: 473 PSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNN----LARLWKRANPGG 527
Query: 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPM 486
++F + S L +LNL SN + +IP+
Sbjct: 528 PVNF------------LKGLSHLHILNLESNGL-DEIPV 553
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%)
Query: 181 LSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240
++ L+L+ NQL P + L L NS+S P L L LN+ N LS
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290
+ NL L L SN + N ++L LDLS N L+
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 395 TNLVRVRMNQNNLSGNISEAFVG-TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSV 453
T++ + + N L F G + L+ LDLS+NN H + + P L L
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 454 NNITGSIPPEIGNSSKLQVLNL 475
NNI P S L+ L+L
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSL 303
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 539 LLKVHYLNLSNNEFSHKIPTQFEKXXXXXXXXXXXXNFLEGEIPSQICNMESLVKLNLSY 598
L+K+ L+LS N S P F+ E + N++SLV++NL++
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAH 264
Query: 599 NQLSGFIPNCFEDMHGLSSIDISYN 623
N L+ + F +H L I + +N
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL 287
L L++S NHLS P S + +L+ L++ +++ NL+SL ++L+ N L
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 585 ICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG------PVPFSKAF 635
+ N LV+++LSYN+L + + F M L + IS NRL P+P K
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 736 ATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773
A+++F + +G+G G +YK +L L+AVK+ +
Sbjct: 28 ASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEE 65
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 736 ATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773
A+++F + +G+G G +YK +L L+AVK+ +
Sbjct: 36 ASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEE 73
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 10/120 (8%)
Query: 171 IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTL------G 224
+P L TL L+ N L ++P + +L L L + +P L G
Sbjct: 119 LPDTXQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 225 KLKCLSNLNMSMNHLSG--AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDL 282
+ + L NL +G ++P+SI N++NL+SL + ++ LS P I +L L LDL
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
Query: 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSN-- 231
V+ L L TL L NQ+ VP L LT L L+L N +S L LK L
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 203
Query: 232 ------LNMSMNHLSG-AIPSSIGNV 250
LN +NH S +P+++ N
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKNT 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,672,714
Number of Sequences: 62578
Number of extensions: 606345
Number of successful extensions: 1967
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 570
length of query: 775
length of database: 14,973,337
effective HSP length: 106
effective length of query: 669
effective length of database: 8,340,069
effective search space: 5579506161
effective search space used: 5579506161
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)