Query 043943
Match_columns 775
No_of_seqs 733 out of 5349
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.2E-81 6.9E-86 750.1 53.0 694 9-772 27-725 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.8E-58 6E-63 552.1 40.0 516 107-651 69-586 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.6E-38 3.4E-43 320.4 7.4 367 83-452 78-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.6E-38 1E-42 317.0 6.8 391 85-477 54-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.8E-40 6.2E-45 318.8 -14.7 491 84-626 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 2.1E-40 4.5E-45 319.8 -16.8 492 104-649 42-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.9E-36 1.1E-40 318.8 -6.7 487 84-623 22-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.5E-35 3.2E-40 315.2 -7.9 464 60-551 23-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.3E-33 4.9E-38 285.0 -4.8 364 82-455 6-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.5E-33 7.7E-38 283.6 -4.8 371 225-606 5-379 (1255)
11 PLN03210 Resistant to P. syrin 99.9 6.7E-23 1.4E-27 246.0 31.1 358 57-430 531-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 7.2E-23 1.6E-27 245.7 27.2 339 245-600 552-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.1E-26 2.5E-31 224.9 -5.4 387 229-623 69-498 (498)
14 KOG4237 Extracellular matrix p 99.9 1.7E-25 3.7E-30 216.8 -2.6 275 84-360 68-359 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.7E-19 3.6E-24 200.3 17.1 267 275-611 201-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 5.6E-19 1.2E-23 196.2 16.9 181 204-413 283-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 7.4E-19 1.6E-23 196.8 17.6 246 108-384 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 1.4E-17 3E-22 186.7 12.6 245 85-360 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 7E-19 1.5E-23 184.2 1.6 280 327-625 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.6E-19 5.6E-24 187.4 -3.6 86 203-288 137-234 (319)
21 KOG0617 Ras suppressor protein 99.7 6.9E-19 1.5E-23 151.3 -5.8 158 78-240 28-186 (264)
22 KOG0617 Ras suppressor protein 99.6 3.6E-18 7.8E-23 146.9 -5.7 164 103-296 29-193 (264)
23 PLN03150 hypothetical protein; 99.5 9.4E-14 2E-18 155.7 14.5 148 7-165 368-525 (623)
24 PLN03150 hypothetical protein; 99.4 3.8E-13 8.3E-18 150.9 11.6 117 542-660 420-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 2.5E-13 5.4E-18 139.1 -4.8 191 422-623 77-270 (722)
26 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 3.9E-17 132.9 -5.1 174 82-288 74-247 (722)
27 KOG4658 Apoptotic ATPase [Sign 99.1 4.1E-11 9E-16 137.1 4.8 128 58-189 523-652 (889)
28 COG4886 Leucine-rich repeat (L 99.1 1.8E-10 3.8E-15 124.1 7.8 179 130-316 115-294 (394)
29 KOG1259 Nischarin, modulator o 99.0 5.3E-11 1.1E-15 112.5 1.3 133 174-312 279-412 (490)
30 COG4886 Leucine-rich repeat (L 99.0 3.3E-10 7.1E-15 122.0 7.6 177 154-338 115-292 (394)
31 KOG1909 Ran GTPase-activating 99.0 1.9E-11 4.1E-16 118.5 -2.2 244 57-311 29-310 (382)
32 KOG1187 Serine/threonine prote 99.0 2.5E-10 5.5E-15 118.9 5.8 50 724-773 61-110 (361)
33 KOG4658 Apoptotic ATPase [Sign 99.0 2.4E-10 5.2E-15 130.9 5.5 153 79-234 519-675 (889)
34 KOG3207 Beta-tubulin folding c 99.0 5.5E-11 1.2E-15 118.5 -0.1 209 104-313 118-340 (505)
35 KOG1909 Ran GTPase-activating 99.0 2.4E-11 5.2E-16 117.8 -2.8 217 102-336 25-283 (382)
36 KOG1259 Nischarin, modulator o 99.0 1.1E-10 2.5E-15 110.3 1.2 129 419-553 283-412 (490)
37 PF14580 LRR_9: Leucine-rich r 99.0 9.8E-10 2.1E-14 100.4 6.7 126 489-620 16-147 (175)
38 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 116.2 0.5 40 514-553 299-339 (505)
39 PF14580 LRR_9: Leucine-rich r 98.9 4.8E-10 1E-14 102.5 3.6 109 79-192 15-126 (175)
40 KOG0531 Protein phosphatase 1, 98.9 3.4E-10 7.3E-15 121.8 -0.9 198 152-361 115-319 (414)
41 PF08263 LRRNT_2: Leucine rich 98.8 9.3E-09 2E-13 70.1 4.4 42 9-55 1-43 (43)
42 KOG0531 Protein phosphatase 1, 98.8 8.7E-10 1.9E-14 118.7 -1.7 222 151-385 91-319 (414)
43 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.4E-13 75.8 3.9 59 493-551 2-60 (61)
44 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.3E-13 76.6 2.7 60 566-625 2-61 (61)
45 KOG2120 SCF ubiquitin ligase, 98.3 3.9E-09 8.5E-14 100.1 -9.2 176 108-285 186-373 (419)
46 KOG1859 Leucine-rich repeat pr 98.3 2.6E-08 5.6E-13 105.7 -5.4 178 443-627 83-293 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.2 2.8E-08 6.2E-13 94.4 -6.7 108 396-503 186-297 (419)
48 KOG1859 Leucine-rich repeat pr 98.2 5.3E-08 1.1E-12 103.4 -5.7 125 445-577 165-291 (1096)
49 KOG2982 Uncharacterized conser 98.1 6.4E-07 1.4E-11 85.4 0.3 63 274-336 198-262 (418)
50 KOG2982 Uncharacterized conser 98.1 5.8E-07 1.3E-11 85.7 -0.6 85 322-406 70-157 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.1 4.3E-07 9.4E-12 85.4 -1.7 213 103-337 26-286 (388)
52 KOG3653 Transforming growth fa 98.0 1.3E-05 2.9E-10 81.7 8.0 27 744-771 216-242 (534)
53 KOG4579 Leucine-rich repeat (L 98.0 5.9E-07 1.3E-11 75.5 -2.2 86 489-578 50-136 (177)
54 COG5238 RNA1 Ran GTPase-activa 98.0 8.5E-07 1.8E-11 83.4 -2.0 86 58-143 30-132 (388)
55 KOG4579 Leucine-rich repeat (L 97.9 4.3E-07 9.3E-12 76.3 -3.7 105 446-553 29-136 (177)
56 KOG0196 Tyrosine kinase, EPH ( 97.9 1.1E-05 2.3E-10 87.3 5.0 50 725-774 607-669 (996)
57 PRK15386 type III secretion pr 97.8 6.8E-05 1.5E-09 77.5 8.7 139 440-600 48-188 (426)
58 PF13306 LRR_5: Leucine rich r 97.8 6.2E-05 1.3E-09 66.5 6.8 84 77-163 6-89 (129)
59 PF13306 LRR_5: Leucine rich r 97.7 0.00014 3E-09 64.2 8.3 36 127-163 8-43 (129)
60 PF12799 LRR_4: Leucine Rich r 97.7 3.8E-05 8.2E-10 52.3 3.4 36 108-144 2-37 (44)
61 PF12799 LRR_4: Leucine Rich r 97.6 3.9E-05 8.3E-10 52.3 2.7 37 566-603 2-38 (44)
62 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.6E-09 66.4 6.1 58 109-168 44-101 (233)
63 KOG1644 U2-associated snRNP A' 97.6 0.00016 3.5E-09 65.7 6.8 105 517-624 43-151 (233)
64 KOG3665 ZYG-1-like serine/thre 97.6 3.1E-05 6.7E-10 87.2 2.3 149 107-257 122-281 (699)
65 KOG2052 Activin A type IB rece 97.5 0.00033 7.2E-09 71.2 8.1 29 743-772 216-244 (513)
66 PRK15386 type III secretion pr 97.5 0.00034 7.3E-09 72.5 8.2 56 80-141 49-104 (426)
67 KOG1025 Epidermal growth facto 97.4 0.00038 8.2E-09 76.1 8.2 33 741-773 699-736 (1177)
68 KOG3665 ZYG-1-like serine/thre 97.4 4.2E-05 9.2E-10 86.1 0.6 125 443-569 147-279 (699)
69 KOG0193 Serine/threonine prote 97.3 0.00021 4.5E-09 75.5 4.9 39 727-774 388-426 (678)
70 KOG4341 F-box protein containi 97.3 4.4E-06 9.5E-11 83.8 -7.9 35 420-454 401-436 (483)
71 KOG4341 F-box protein containi 97.2 9.7E-06 2.1E-10 81.4 -7.0 82 204-285 139-226 (483)
72 PLN03224 probable serine/threo 97.0 0.00047 1E-08 75.1 4.0 37 736-772 143-196 (507)
73 KOG2739 Leucine-rich acidic nu 96.9 0.00046 9.9E-09 65.7 2.1 62 442-505 41-104 (260)
74 KOG0658 Glycogen synthase kina 96.8 0.00083 1.8E-08 66.9 3.3 36 739-774 25-61 (364)
75 KOG2739 Leucine-rich acidic nu 96.8 0.00059 1.3E-08 64.9 1.9 62 81-144 41-104 (260)
76 PLN03225 Serine/threonine-prot 96.4 0.0039 8.5E-08 69.9 5.3 37 736-772 130-171 (566)
77 KOG2123 Uncharacterized conser 96.3 0.00016 3.4E-09 68.8 -5.1 84 420-507 19-103 (388)
78 KOG1947 Leucine rich repeat pr 96.3 0.00029 6.3E-09 78.4 -4.4 235 105-359 186-439 (482)
79 KOG2123 Uncharacterized conser 96.1 0.00052 1.1E-08 65.5 -3.2 86 346-435 18-103 (388)
80 KOG1947 Leucine rich repeat pr 95.8 0.00083 1.8E-08 74.7 -3.7 38 394-431 242-280 (482)
81 KOG0192 Tyrosine kinase specif 95.8 0.0062 1.4E-07 63.5 2.8 29 744-773 47-76 (362)
82 PTZ00284 protein kinase; Provi 95.7 0.0063 1.4E-07 67.2 2.6 42 730-771 121-163 (467)
83 PF03109 ABC1: ABC1 family; I 95.3 0.0035 7.6E-08 53.9 -0.8 34 740-774 14-47 (119)
84 KOG0663 Protein kinase PITSLRE 95.3 0.0085 1.8E-07 59.1 1.7 34 740-773 78-112 (419)
85 TIGR01982 UbiB 2-polyprenylphe 95.2 0.017 3.6E-07 62.5 3.7 35 739-774 119-153 (437)
86 PTZ00036 glycogen synthase kin 95.0 0.021 4.7E-07 62.3 3.9 36 737-772 65-101 (440)
87 KOG0600 Cdc2-related protein k 94.8 0.012 2.6E-07 61.3 1.4 31 743-773 122-153 (560)
88 PTZ00283 serine/threonine prot 94.8 0.017 3.8E-07 63.9 2.7 37 736-772 30-67 (496)
89 KOG1026 Nerve growth factor re 94.8 0.013 2.8E-07 65.2 1.6 30 744-773 492-527 (774)
90 cd05104 PTKc_Kit Catalytic dom 94.8 0.023 4.9E-07 60.7 3.4 33 740-772 37-75 (375)
91 PF00560 LRR_1: Leucine Rich R 94.6 0.013 2.8E-07 33.0 0.6 18 567-585 2-19 (22)
92 smart00090 RIO RIO-like kinase 94.5 0.029 6.4E-07 55.1 3.3 33 740-772 30-64 (237)
93 KOG1035 eIF-2alpha kinase GCN2 94.4 0.011 2.4E-07 68.1 0.1 34 738-771 479-513 (1351)
94 PF00560 LRR_1: Leucine Rich R 94.3 0.018 4E-07 32.4 0.8 18 133-151 2-19 (22)
95 KOG0194 Protein tyrosine kinas 94.1 0.036 7.9E-07 59.1 3.0 29 744-772 163-196 (474)
96 cd05622 STKc_ROCK1 Catalytic d 94.0 0.039 8.4E-07 58.8 3.2 43 729-771 34-77 (371)
97 cd05596 STKc_ROCK Catalytic do 93.9 0.031 6.8E-07 59.5 2.3 36 736-771 41-77 (370)
98 cd05106 PTKc_CSF-1R Catalytic 93.9 0.048 1E-06 58.2 3.5 34 739-772 39-78 (374)
99 cd05621 STKc_ROCK2 Catalytic d 93.7 0.049 1.1E-06 58.0 3.2 39 733-771 38-77 (370)
100 PRK04750 ubiB putative ubiquin 93.5 0.063 1.4E-06 59.0 3.6 35 738-773 120-155 (537)
101 cd05105 PTKc_PDGFR_alpha Catal 93.4 0.076 1.7E-06 57.1 4.1 34 739-772 38-77 (400)
102 cd05107 PTKc_PDGFR_beta Cataly 93.4 0.06 1.3E-06 57.8 3.3 34 740-773 39-78 (401)
103 PLN00034 mitogen-activated pro 93.3 0.061 1.3E-06 56.9 3.1 29 744-772 80-109 (353)
104 KOG4236 Serine/threonine prote 93.1 0.052 1.1E-06 56.9 2.1 32 740-772 567-599 (888)
105 KOG1006 Mitogen-activated prot 92.9 0.029 6.4E-07 53.6 -0.1 30 744-773 70-100 (361)
106 KOG0605 NDR and related serine 92.8 0.094 2E-06 55.4 3.4 37 736-772 139-176 (550)
107 KOG1166 Mitotic checkpoint ser 92.6 0.083 1.8E-06 61.3 3.1 36 737-772 697-732 (974)
108 KOG0694 Serine/threonine prote 92.5 0.13 2.9E-06 56.0 4.2 36 738-773 368-404 (694)
109 KOG1027 Serine/threonine prote 92.4 0.035 7.5E-07 61.6 -0.2 34 738-772 509-543 (903)
110 PTZ00426 cAMP-dependent protei 92.3 0.12 2.5E-06 54.4 3.5 33 739-771 31-65 (340)
111 cd07875 STKc_JNK1 Catalytic do 91.9 0.16 3.4E-06 54.1 4.0 36 737-772 23-59 (364)
112 KOG4308 LRR-containing protein 91.9 0.00098 2.1E-08 72.0 -12.7 38 275-312 262-303 (478)
113 PHA03211 serine/threonine kina 91.9 0.15 3.3E-06 55.7 3.9 32 739-770 170-202 (461)
114 KOG0577 Serine/threonine prote 91.8 0.084 1.8E-06 56.3 1.8 34 740-773 28-62 (948)
115 PHA03209 serine/threonine kina 91.5 0.22 4.7E-06 52.8 4.5 36 736-771 64-100 (357)
116 KOG1095 Protein tyrosine kinas 91.5 0.17 3.6E-06 59.0 3.8 31 743-773 697-733 (1025)
117 PF14575 EphA2_TM: Ephrin type 91.1 0.19 4.2E-06 38.7 2.6 18 726-743 55-72 (75)
118 KOG0199 ACK and related non-re 90.9 0.13 2.9E-06 56.0 2.2 40 728-774 107-150 (1039)
119 cd05055 PTKc_PDGFR Catalytic d 90.9 0.19 4.1E-06 51.8 3.3 35 738-772 35-75 (302)
120 cd06635 STKc_TAO1 Catalytic do 90.8 0.21 4.5E-06 51.9 3.5 32 740-771 27-59 (317)
121 KOG0473 Leucine-rich repeat pr 90.6 0.0042 9.1E-08 57.8 -8.1 88 78-168 37-124 (326)
122 KOG4308 LRR-containing protein 90.2 0.0019 4.2E-08 69.7 -12.4 37 397-433 89-128 (478)
123 KOG0598 Ribosomal protein S6 k 89.7 0.21 4.5E-06 50.4 2.2 35 738-772 25-60 (357)
124 COG0661 AarF Predicted unusual 89.7 0.25 5.5E-06 54.0 3.1 36 738-774 126-161 (517)
125 KOG0574 STE20-like serine/thre 89.6 0.045 9.8E-07 53.0 -2.3 33 740-772 35-68 (502)
126 KOG3864 Uncharacterized conser 89.6 0.042 9.2E-07 50.5 -2.4 81 517-597 102-184 (221)
127 PHA03212 serine/threonine kina 89.4 0.33 7.2E-06 52.1 3.7 34 738-771 92-126 (391)
128 KOG0197 Tyrosine kinases [Sign 88.7 0.23 4.9E-06 52.6 1.8 30 744-773 212-241 (468)
129 KOG4278 Protein tyrosine kinas 88.6 0.21 4.6E-06 53.7 1.4 32 743-774 272-304 (1157)
130 KOG0581 Mitogen-activated prot 87.9 0.65 1.4E-05 47.0 4.3 39 727-772 75-114 (364)
131 PF13504 LRR_7: Leucine rich r 87.8 0.31 6.8E-06 25.3 1.1 9 109-117 3-11 (17)
132 KOG4721 Serine/threonine prote 87.6 0.24 5.2E-06 52.7 1.1 38 727-772 120-157 (904)
133 PRK09605 bifunctional UGMP fam 86.3 0.36 7.8E-06 54.2 1.7 40 729-769 324-363 (535)
134 KOG1094 Discoidin domain recep 86.1 0.6 1.3E-05 50.1 3.0 31 744-774 544-574 (807)
135 KOG0984 Mitogen-activated prot 86.0 0.49 1.1E-05 43.8 2.1 31 744-774 52-83 (282)
136 PF08693 SKG6: Transmembrane a 86.0 0.52 1.1E-05 30.7 1.6 10 673-682 13-22 (40)
137 KOG4257 Focal adhesion tyrosin 85.9 0.5 1.1E-05 51.1 2.4 31 743-773 394-429 (974)
138 KOG0667 Dual-specificity tyros 85.9 0.81 1.8E-05 49.9 4.0 31 743-773 191-222 (586)
139 PF04478 Mid2: Mid2 like cell 85.1 0.46 9.9E-06 41.5 1.4 33 670-702 47-79 (154)
140 PHA03207 serine/threonine kina 84.9 0.85 1.8E-05 49.0 3.7 34 739-772 93-129 (392)
141 KOG0032 Ca2+/calmodulin-depend 84.6 0.76 1.6E-05 48.6 3.0 29 744-772 41-70 (382)
142 smart00369 LRR_TYP Leucine-ric 84.3 0.84 1.8E-05 26.7 1.9 18 589-606 2-19 (26)
143 smart00370 LRR Leucine-rich re 84.3 0.84 1.8E-05 26.7 1.9 18 589-606 2-19 (26)
144 KOG1989 ARK protein kinase fam 84.2 0.87 1.9E-05 51.3 3.4 32 740-771 39-71 (738)
145 KOG3864 Uncharacterized conser 84.2 0.15 3.2E-06 47.0 -2.1 80 422-501 103-185 (221)
146 PF13516 LRR_6: Leucine Rich r 84.1 0.39 8.4E-06 27.6 0.4 13 541-553 3-15 (24)
147 KOG0473 Leucine-rich repeat pr 83.7 0.023 4.9E-07 53.1 -7.5 85 102-189 37-121 (326)
148 PRK10359 lipopolysaccharide co 83.5 1.1 2.5E-05 43.3 3.5 36 737-773 30-65 (232)
149 smart00369 LRR_TYP Leucine-ric 82.7 1 2.2E-05 26.4 1.8 13 517-529 3-15 (26)
150 smart00370 LRR Leucine-rich re 82.7 1 2.2E-05 26.4 1.8 13 517-529 3-15 (26)
151 KOG1165 Casein kinase (serine/ 82.7 0.84 1.8E-05 45.6 2.2 31 739-769 29-60 (449)
152 KOG1167 Serine/threonine prote 81.3 0.56 1.2E-05 48.2 0.5 36 737-772 35-74 (418)
153 KOG1024 Receptor-like protein 80.9 0.59 1.3E-05 47.6 0.5 42 731-772 277-324 (563)
154 KOG0664 Nemo-like MAPK-related 80.2 0.64 1.4E-05 44.7 0.5 31 741-771 56-87 (449)
155 KOG0615 Serine/threonine prote 79.5 1.7 3.8E-05 44.7 3.3 29 744-772 178-207 (475)
156 KOG1151 Tousled-like protein k 79.2 0.35 7.5E-06 49.8 -1.7 27 744-770 469-496 (775)
157 KOG0986 G protein-coupled rece 77.8 0.55 1.2E-05 48.8 -0.8 34 738-771 185-219 (591)
158 KOG0592 3-phosphoinositide-dep 77.6 1.2 2.5E-05 47.7 1.4 34 738-771 73-107 (604)
159 KOG0696 Serine/threonine prote 77.3 1.1 2.4E-05 46.0 1.1 44 730-774 342-386 (683)
160 KOG0200 Fibroblast/platelet-de 77.3 2.1 4.5E-05 48.9 3.5 30 744-773 302-339 (609)
161 PF02439 Adeno_E3_CR2: Adenovi 76.9 2.8 6.1E-05 26.9 2.4 9 693-701 25-33 (38)
162 KOG0582 Ste20-like serine/thre 76.8 2.5 5.5E-05 44.1 3.5 28 744-771 32-60 (516)
163 PF01102 Glycophorin_A: Glycop 76.1 1.8 3.9E-05 36.8 1.9 28 674-701 66-93 (122)
164 KOG0666 Cyclin C-dependent kin 75.4 0.99 2.1E-05 44.6 0.3 32 742-773 28-64 (438)
165 KOG1235 Predicted unusual prot 75.4 2.2 4.8E-05 46.8 2.9 36 738-774 162-197 (538)
166 PF15102 TMEM154: TMEM154 prot 74.4 3.7 8.1E-05 35.8 3.4 8 728-735 125-132 (146)
167 PHA03210 serine/threonine kina 71.1 2 4.4E-05 47.8 1.4 24 737-760 147-170 (501)
168 PTZ00382 Variant-specific surf 71.0 3.4 7.4E-05 33.7 2.3 10 673-682 67-76 (96)
169 PTZ00267 NIMA-related protein 70.9 4 8.8E-05 45.1 3.8 32 740-771 69-102 (478)
170 KOG0585 Ca2+/calmodulin-depend 70.7 3.7 8E-05 43.3 3.0 35 738-772 97-132 (576)
171 KOG4279 Serine/threonine prote 69.2 4.1 9E-05 45.0 3.1 31 741-771 578-609 (1226)
172 KOG0578 p21-activated serine/t 68.2 4.2 9.1E-05 43.8 2.9 28 744-771 279-307 (550)
173 KOG4258 Insulin/growth factor 66.3 5.3 0.00011 45.1 3.3 20 741-760 997-1016(1025)
174 KOG0983 Mitogen-activated prot 61.7 7.9 0.00017 37.8 3.2 27 746-772 100-127 (391)
175 smart00365 LRR_SD22 Leucine-ri 60.2 8 0.00017 22.8 1.8 14 589-602 2-15 (26)
176 KOG0616 cAMP-dependent protein 57.8 8.6 0.00019 38.1 2.7 33 740-772 46-79 (355)
177 PRK01723 3-deoxy-D-manno-octul 56.7 14 0.0003 36.4 4.1 28 743-771 36-64 (239)
178 KOG4242 Predicted myosin-I-bin 56.4 54 0.0012 35.0 8.2 37 324-360 414-453 (553)
179 smart00368 LRR_RI Leucine rich 55.4 8.1 0.00018 23.1 1.4 13 541-553 3-15 (28)
180 KOG0612 Rho-associated, coiled 53.9 3 6.6E-05 48.8 -1.1 42 731-772 68-110 (1317)
181 smart00364 LRR_BAC Leucine-ric 53.4 9.4 0.0002 22.4 1.3 13 566-578 3-15 (26)
182 KOG0611 Predicted serine/threo 51.9 6 0.00013 40.7 0.7 27 746-772 61-88 (668)
183 KOG0607 MAP kinase-interacting 51.2 11 0.00023 37.8 2.2 39 729-772 74-113 (463)
184 KOG4242 Predicted myosin-I-bin 48.4 1.4E+02 0.0029 32.2 9.6 19 299-317 165-183 (553)
185 PF13095 FTA2: Kinetochore Sim 48.1 19 0.00041 34.1 3.3 31 738-769 37-68 (207)
186 KOG3763 mRNA export factor TAP 46.4 13 0.00029 40.1 2.2 15 515-529 217-231 (585)
187 KOG1033 eIF-2alpha kinase PEK/ 45.5 5.2 0.00011 42.8 -0.9 38 734-771 45-83 (516)
188 PF02009 Rifin_STEVOR: Rifin/s 44.8 12 0.00026 37.7 1.6 15 688-702 271-285 (299)
189 TIGR00864 PCC polycystin catio 44.2 13 0.00029 48.3 2.1 38 595-632 1-38 (2740)
190 PF05393 Hum_adeno_E3A: Human 44.0 23 0.00049 27.7 2.5 19 689-707 47-65 (94)
191 KOG0610 Putative serine/threon 43.4 14 0.00031 38.4 1.8 29 744-772 83-112 (459)
192 KOG0690 Serine/threonine prote 40.9 11 0.00023 37.8 0.5 36 738-773 168-204 (516)
193 KOG0596 Dual specificity; seri 40.2 9.6 0.00021 41.2 0.1 28 744-771 367-394 (677)
194 KOG0579 Ste20-like serine/thre 38.4 7.1 0.00015 42.8 -1.2 25 746-770 40-65 (1187)
195 TIGR01478 STEVOR variant surfa 38.2 25 0.00054 34.5 2.5 14 690-703 276-289 (295)
196 COG0478 RIO-like serine/threon 37.7 33 0.00071 34.1 3.2 28 744-771 97-124 (304)
197 smart00367 LRR_CC Leucine-rich 36.6 26 0.00056 20.4 1.5 11 107-117 2-12 (26)
198 PTZ00046 rifin; Provisional 35.6 24 0.00053 36.2 2.1 15 689-703 331-345 (358)
199 PF01299 Lamp: Lysosome-associ 35.3 31 0.00068 35.4 2.9 27 674-700 272-298 (306)
200 KOG4645 MAPKKK (MAP kinase kin 35.3 14 0.00031 44.4 0.4 36 736-771 1233-1269(1509)
201 COG4744 Uncharacterized conser 34.9 1.1E+02 0.0023 25.3 5.1 23 744-768 88-113 (121)
202 TIGR01477 RIFIN variant surfac 34.6 26 0.00056 35.9 2.1 14 690-703 327-340 (353)
203 KOG0586 Serine/threonine prote 34.5 34 0.00074 37.6 3.0 36 737-772 55-91 (596)
204 PF09919 DUF2149: Uncharacteri 33.3 30 0.00065 27.9 1.8 19 747-767 71-90 (92)
205 PTZ00370 STEVOR; Provisional 32.9 27 0.00058 34.4 1.8 13 691-703 273-285 (296)
206 PF14610 DUF4448: Protein of u 31.1 33 0.00071 32.3 2.1 20 671-690 156-175 (189)
207 PRK14051 negative regulator Gr 30.4 52 0.0011 26.8 2.7 26 743-768 28-53 (123)
208 COG1718 RIO1 Serine/threonine 30.2 86 0.0019 30.8 4.6 46 728-773 35-83 (268)
209 KOG0671 LAMMER dual specificit 30.0 17 0.00036 37.5 -0.1 36 737-772 88-124 (415)
210 KOG1152 Signal transduction se 29.7 49 0.0011 36.3 3.2 33 739-771 562-595 (772)
211 PF08374 Protocadherin: Protoc 29.2 44 0.00096 31.4 2.5 22 671-692 37-58 (221)
212 KOG0670 U4/U6-associated splic 28.3 41 0.00088 36.4 2.3 27 746-772 440-467 (752)
213 KOG0695 Serine/threonine prote 27.8 19 0.00041 36.1 -0.1 35 738-772 250-285 (593)
214 KOG0668 Casein kinase II, alph 27.8 15 0.00032 35.0 -0.8 29 744-772 44-73 (338)
215 PF15102 TMEM154: TMEM154 prot 26.4 72 0.0016 28.1 3.1 7 674-680 58-64 (146)
216 KOG3763 mRNA export factor TAP 25.8 36 0.00078 37.0 1.4 38 417-454 215-254 (585)
217 KOG0584 Serine/threonine prote 25.5 23 0.00049 39.0 -0.1 22 745-766 47-69 (632)
218 PF06365 CD34_antigen: CD34/Po 21.2 1.2E+02 0.0025 28.7 3.7 7 694-700 122-128 (202)
219 PHA03281 envelope glycoprotein 21.2 3.7E+02 0.008 29.4 7.6 11 746-756 624-637 (642)
220 PF14991 MLANA: Protein melan- 20.7 24 0.00053 29.1 -0.7 18 683-700 33-50 (118)
221 KOG1236 Predicted unusual prot 20.4 42 0.00091 35.4 0.7 42 732-774 184-241 (565)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-81 Score=750.13 Aligned_cols=694 Identities=36% Similarity=0.592 Sum_probs=487.4
Q ss_pred cHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEE
Q 043943 9 STEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFL 88 (775)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L 88 (775)
.++|+++|++||+++. +|...+.+|. .+.+||.|.|+.|+..++|+.++|+++.+.|.++ ..+..+++|++|
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~------~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWN------SSADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCC------CCCCCCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEE
Confidence 5689999999999996 4766778997 4678999999999888899999999999998887 788899999999
Q ss_pred ECCCCCCcccCccccc-CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcC
Q 043943 89 NLFNNELFGIIPPQIS-QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSL 167 (775)
Q Consensus 89 ~ls~~~~~~~~~~~~~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 167 (775)
+|++|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 9999998887776654 888999999999988877774 4578888888888888878888888888888888888887
Q ss_pred cccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccc
Q 043943 168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSI 247 (775)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 247 (775)
.+.+|..+.++++|++|++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 77777777777777777777777777777777777777777777777776666666666677777776666666666666
Q ss_pred cCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCe
Q 043943 248 GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFD 327 (775)
Q Consensus 248 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 327 (775)
+++++|+.|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~------------- 323 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK------------- 323 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-------------
Confidence 6666666666666666655565555566666666666555555555555555555555555555444
Q ss_pred eeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecccccc
Q 043943 328 LELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNL 407 (775)
Q Consensus 328 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 407 (775)
.|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..++
T Consensus 324 -----------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~------------ 380 (968)
T PLN00113 324 -----------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG------------ 380 (968)
T ss_pred -----------CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC------------
Confidence 444445555555555555555555555555555555555555555554444443333
Q ss_pred ccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChh
Q 043943 408 SGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPME 487 (775)
Q Consensus 408 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 487 (775)
+|+.|++++|++.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..
T Consensus 381 -------------~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 381 -------------NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred -------------CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 3444444444444445555555566666666666666666666666666777777777776666666
Q ss_pred hhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccc
Q 043943 488 LGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567 (775)
Q Consensus 488 l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 567 (775)
+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++++..|..+.++++|+.|+|++|++.+.+|..+..+. +|
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L 525 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK-KL 525 (968)
T ss_pred hccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc-CC
Confidence 6667777777777777776666544 357788888888888888888888888888999999998888888888887 89
Q ss_pred cEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCc
Q 043943 568 SELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNR 647 (775)
Q Consensus 568 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~ 647 (775)
+.|+|++|.+++.+|..|..+++|+.|++++|++++.+|..+..+++|+.+++++|++.|.+|..+++..+....+.||+
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999889899899999999
Q ss_pred CCCCCCC--CCCCCCCccCCcccccceeeehhhHHHHHHHHHHHHHHhhheecccccccccCCCCCCCCCCCc-cccccc
Q 043943 648 GLCGDDK--GLSSCKAFRSSRRASVKKLIIMILLPLLGVLALSIISIGLLFNSRRTKMVSQTGQSSPANASGF-LSTLTL 724 (775)
Q Consensus 648 ~lc~~~~--~~~~c~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~ 724 (775)
.+|+.++ +..+|... ++. ....++++++++++++++++++++++++|+++......+ ........ ......
T Consensus 606 ~lc~~~~~~~~~~c~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 679 (968)
T PLN00113 606 DLCGGDTTSGLPPCKRV----RKT-PSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVE-NEDGTWELQFFDSKV 679 (968)
T ss_pred cccCCccccCCCCCccc----ccc-ceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccc-ccccccccccccccc
Confidence 9998543 23345321 111 122222222222222222222223322222211111100 00000000 000011
Q ss_pred cccccHHHHHHHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 725 EGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 725 ~~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
.+.++++++.. .|.+.++||+|+||.||||+. .+|..||||++..
T Consensus 680 ~~~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~ 725 (968)
T PLN00113 680 SKSITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEIND 725 (968)
T ss_pred chhhhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccC
Confidence 23456677654 477889999999999999997 5899999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.8e-58 Score=552.05 Aligned_cols=516 Identities=37% Similarity=0.585 Sum_probs=399.5
Q ss_pred CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCccccc-CCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLG-NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185 (775)
Q Consensus 107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 185 (775)
.+++.|++++|.+.+.+|..|..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 4678888888888877888888888888888888888777776654 777888888887777766554 3466777777
Q ss_pred ccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCC
Q 043943 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG 265 (775)
Q Consensus 186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 265 (775)
+++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++++++|+.|++++|.+++
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 77777666666666667777777777776666666666666666666666666666666666666666666666666666
Q ss_pred CCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCC
Q 043943 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGN 345 (775)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 345 (775)
.+|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 66666666666666666666666566666666666666666666665555555555555555555555555555555555
Q ss_pred CCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEE
Q 043943 346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL 425 (775)
Q Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 425 (775)
+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+.+..|..+ +.+++|+.|
T Consensus 307 l~~L~~L~l~~n~~~~~~~------------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L 361 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIP------------------------VALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVL 361 (968)
T ss_pred CCCCcEEECCCCccCCcCC------------------------hhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEE
Confidence 5555555555555554444 444455555555555555555555544 667888889
Q ss_pred eCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCc
Q 043943 426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF 505 (775)
Q Consensus 426 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 505 (775)
++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.++
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943 506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI 585 (775)
Q Consensus 506 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l 585 (775)
+.++..+..+++|+.|++++|++.+..|..+ ..++|+.|++++|++++.+|..+..++ +|+.|++++|++++.+|..+
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred CccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHH
Confidence 9999989999999999999999999888766 458999999999999999999999998 99999999999999999999
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC-CcCCCCCccccCCCcCCCC
Q 043943 586 CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS-KAFRDAPAEALQGNRGLCG 651 (775)
Q Consensus 586 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~-~~~~~~~~~~~~gn~~lc~ 651 (775)
..+++|++|++++|.+++.+|..+.++++|+.|++++|+++|.+|.. .....+....+.+|+..+.
T Consensus 520 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 520 SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 99999999999999999999999999999999999999999999864 2234455556677776553
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-38 Score=320.40 Aligned_cols=367 Identities=24% Similarity=0.248 Sum_probs=296.1
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+..+.||+++|.+..+.+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|..+-.+.+..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 46678999999998888888899999999999999888 67876666777999999999888777788888999999999
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA 242 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 242 (775)
+.|.|+.+....|..-.++++|+|++|.++..-...|.++.+|.+|.|+.|.++...+..|.++++|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999888778888888899999999988877777888888999999999999888888888899999999999988744
Q ss_pred CCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL 322 (775)
Q Consensus 243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 322 (775)
.--.|..+++|+.|.+..|++...-...|..|.++++|+|+.|+++..-..++.+++.|+.|++++|.+..+.++.+.-+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 45678888899999999888886666678888899999999998888777888888889999999988888888888888
Q ss_pred CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCcc---CcCCCcccc
Q 043943 323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKN---FKNLTNLVR 399 (775)
Q Consensus 323 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~ 399 (775)
++|++|+|+.|+++...+..|..+..|++|+|+.|.++..-...|..+++|++|+|..|.+++.+.+. |.++++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 88888888888888888888888888888888888887666667777888888888888887665432 556666666
Q ss_pred eeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcc
Q 043943 400 VRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFS 452 (775)
Q Consensus 400 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 452 (775)
|++.+|++..+....| ..++.|++|+|.+|.+..+.+..|..+ .|++|.++
T Consensus 397 L~l~gNqlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eeecCceeeecchhhh-ccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 6666666655444444 556666666666666666666666665 56665554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-38 Score=317.04 Aligned_cols=391 Identities=25% Similarity=0.228 Sum_probs=328.0
Q ss_pred CCEEECCCCCCcccCcccccCC--CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 85 LLFLNLFNNELFGIIPPQISQL--FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 85 L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
-+.|+.+++.+..+....+..+ ..-+.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 4567777777654333333322 23456999999999888888999999999999999998 77876666778999999
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA 242 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 242 (775)
.+|.|+.+-...+..++.|+.|||+.|.++......|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 99999999889999999999999999998866666787778999999999999988888999999999999999999977
Q ss_pred CCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL 322 (775)
Q Consensus 243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 322 (775)
.+..|.++++|+.|+|..|++.-.---.|..+++|+.|.+..|.+.......|..+.++++|+|..|+++..-..++.++
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 77778889999999999998874434568889999999999999988778889999999999999999988777889999
Q ss_pred CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceec
Q 043943 323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM 402 (775)
Q Consensus 323 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 402 (775)
+.|+.|+++.|.+..+-++....+++|+.|+|+.|.++...+..|..+..|++|.|++|.+...-...|..+.+|+.|+|
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 99999999999999888888888999999999999999888888888899999999999888777777888888888888
Q ss_pred cccccccccchh--hhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccC
Q 043943 403 NQNNLSGNISEA--FVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSS 477 (775)
Q Consensus 403 ~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~ 477 (775)
++|.+...+.+. .+..+++|+.|++.+|++..+....|.++++|+.|+|.+|.|..+-|.+|..+ .|++|.+..
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 888877554332 23557888888888888887777788888888888888888877777788777 777776654
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.8e-40 Score=318.84 Aligned_cols=491 Identities=31% Similarity=0.440 Sum_probs=255.6
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY 163 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 163 (775)
.++.+.+++|.+. .+.+.+.++..|.+|++++|++. .+|.+++.+..++.|+.++|++. .+|..+..+.+|..++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4555666666655 23334556666666666666666 45556666666666666666665 566666666666666666
Q ss_pred cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccC
Q 043943 164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243 (775)
Q Consensus 164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 243 (775)
+|.+.. .+..++.+..|+.++..+|+++ ..|.++..+.+|..+++.+|++....|+.+ +++.|++|+...|.+. .+
T Consensus 123 ~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tl 198 (565)
T KOG0472|consen 123 SNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TL 198 (565)
T ss_pred ccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cC
Confidence 666553 3445556666666666666665 455556666666666666666664433333 3666666666666555 55
Q ss_pred CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943 244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK 323 (775)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 323 (775)
|..++.+.+|+.|++..|++. ..| .|..|+.|++|+++.|.+.....+...+++++..|++.+|+++ ..|+.+.-+.
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLr 275 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLR 275 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhh
Confidence 666666666666666666665 444 4666666666666666665333333345666666666666666 4556666666
Q ss_pred CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecc
Q 043943 324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMN 403 (775)
Q Consensus 324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 403 (775)
+|++||+++|.+++ .|..++++ .|+.|.+.+|.+.. +-..+-+...-+.| +.|+. .+.
T Consensus 276 sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vL------------------KyLrs-~~~ 333 (565)
T KOG0472|consen 276 SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVL------------------KYLRS-KIK 333 (565)
T ss_pred hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHH------------------HHHHH-hhc
Confidence 66666666666663 34556666 66666666665541 11111111100000 00000 000
Q ss_pred ccccccc--cchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCC---CCcEEEccCC
Q 043943 404 QNNLSGN--ISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSS---KLQVLNLSSN 478 (775)
Q Consensus 404 ~n~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~~L~Ls~n 478 (775)
+-.+... ..+.- ...+ ...........+.+.|++++-+++ .+|....... -.+.++++.|
T Consensus 334 ~dglS~se~~~e~~-~t~~-------------~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskN 398 (565)
T KOG0472|consen 334 DDGLSQSEGGTETA-MTLP-------------SESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKN 398 (565)
T ss_pred cCCCCCCccccccc-CCCC-------------CCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccc
Confidence 0000000 00000 0000 000011112233344444444444 2222211111 2445555555
Q ss_pred CccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCch
Q 043943 479 HIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPT 558 (775)
Q Consensus 479 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 558 (775)
++. .+|..+..+..+.+.-+..|+..+-+|..++.+++|+.|++++|.+. .+|..++.+..|+.|+++.|+|. .+|.
T Consensus 399 qL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 399 QLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred hHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchH
Confidence 554 34444444443333222222222244445555555555555555554 34555555555666666666554 4555
Q ss_pred hHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 043943 559 QFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626 (775)
Q Consensus 559 ~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~ 626 (775)
.+..+. .++.+-.++|++....|+.+.++.+|..||+.+|.+. .+|..+.++++|++|++++|+|.
T Consensus 476 ~~y~lq-~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQ-TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHH-HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 555444 4555555556665444455666666666666666665 34555666666666666666665
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=319.81 Aligned_cols=492 Identities=30% Similarity=0.416 Sum_probs=355.4
Q ss_pred cCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCE
Q 043943 104 SQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST 183 (775)
Q Consensus 104 ~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 183 (775)
..-..|+.|.+++|.+. .+...+.++..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|..+..+.+|+.
T Consensus 42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 34466888899999888 44456888899999999999887 77888888888999999988887 56777888888888
Q ss_pred EeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccC
Q 043943 184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL 263 (775)
Q Consensus 184 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (775)
++++.|.+. ..++.++.+..|+.++..+|+++ ..|..+..+.+|..+++.+|.+... |+..-+++.|++|+...|.+
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLL 195 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhh
Confidence 888888876 56667888888888888888887 4577788888888888888888744 44444488888888888877
Q ss_pred CCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccC-CCCCCCCeeeCcCCcCcCccCCc
Q 043943 264 SGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI-GNLKCLFDLELSMNNLTGVIPSS 342 (775)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~ 342 (775)
+ .+|+.++.+.+|+.|++..|++. ..| .|..+..|++++++.|++. .+|.+. ..++++..||+.+|+++ ..|+.
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence 5 77788888888888888888887 445 6778888888888888777 444443 46777777777777777 34655
Q ss_pred CCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhcc-CCC
Q 043943 343 IGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGT-YPT 421 (775)
Q Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~~ 421 (775)
+.-+++|..||+++|.++ .+|..++++ +|+.|-+.+|.+. ..-.+...+. -.-
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr------------------------TiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR------------------------TIRREIISKGTQEV 324 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH------------------------HHHHHHHcccHHHH
Confidence 666667777777777766 345555555 5555555555443 2111111000 000
Q ss_pred CcEEe--CCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCC---CCCE
Q 043943 422 LSFLD--LSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS---SLNK 496 (775)
Q Consensus 422 L~~L~--l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~---~L~~ 496 (775)
|++|. +....++......- ..-+ ...+..| ......+.+.|++++-+++ .+|.....-. -.+.
T Consensus 325 LKyLrs~~~~dglS~se~~~e------~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~ 392 (565)
T KOG0472|consen 325 LKYLRSKIKDDGLSQSEGGTE------TAMT----LPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTS 392 (565)
T ss_pred HHHHHHhhccCCCCCCccccc------ccCC----CCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEE
Confidence 11111 00001100000000 0000 0111111 2345567889999998888 4555443322 3789
Q ss_pred EEcCCCcCcccCCcCccCCCCCCE-EECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCC
Q 043943 497 LILNKNQLFGSLPPEIGTLTELEL-LDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575 (775)
Q Consensus 497 L~L~~n~~~~~~~~~~~~l~~L~~-L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n 575 (775)
.++++|++. ++|..+..+..+.+ +++++|.+ +.+|..+..+++|..|+|++|.+. .+|..++.+. .|+.||+++|
T Consensus 393 VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv-~Lq~LnlS~N 468 (565)
T KOG0472|consen 393 VNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV-RLQTLNLSFN 468 (565)
T ss_pred EecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhh-hhheeccccc
Confidence 999999998 78888877777655 45555555 478888999999999999999886 6899999999 7999999999
Q ss_pred cCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCC
Q 043943 576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGL 649 (775)
Q Consensus 576 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~l 649 (775)
++. .+|.++..+..|+.+-.++|++....|+.+.++.+|..||+.+|.++...|.-+...+.....+.|||.-
T Consensus 469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 998 8899998899999999999999999999999999999999999999987777777777778888899864
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-36 Score=318.84 Aligned_cols=487 Identities=31% Similarity=0.384 Sum_probs=267.0
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY 163 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 163 (775)
.++.|+++.|.+.....+.+.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 3666777777654333334455555777777777666 56666777777777777777666 556666677777777776
Q ss_pred cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccC
Q 043943 164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243 (775)
Q Consensus 164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 243 (775)
.|.+. ..|..+..+.+|++|+++.|.+. ..|..+..+..++.+..++|..... ++... ++.+++..|.+.+.+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence 66554 45666666667777777776655 4555555666666666666622111 12111 566666666666555
Q ss_pred CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943 244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK 323 (775)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 323 (775)
+..+..+.+ .|+|++|.+. ...+.++++|+.|....|++.... -.-++|+.|+.+.|.++...+ -..-.
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~ 241 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPL 241 (1081)
T ss_pred hcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccc
Confidence 555555444 5666666554 123445556666665555554221 123455555555555552211 11223
Q ss_pred CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecc
Q 043943 324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMN 403 (775)
Q Consensus 324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 403 (775)
+|++++++.|++... |+++..+.+|+.++...|.++ .+|..+...++|+.+.+.+|.+.- +|.....+++|+.|++.
T Consensus 242 nl~~~dis~n~l~~l-p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNL-PEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhcc-hHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeeh
Confidence 455555555555532 355555555555555555553 444444455555555555555442 33334444444445444
Q ss_pred ccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCC-CCEEEcccCcccccCCccccCCCCCcEEEccCCCccC
Q 043943 404 QNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ-LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG 482 (775)
Q Consensus 404 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 482 (775)
.|++ ....+..+..... |+.|+.+.|++.......=...+.|+.|++.+|.+++
T Consensus 319 ~N~L-------------------------~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 319 SNNL-------------------------PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred hccc-------------------------cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc
Confidence 4444 3222222222222 4444444444432211112234456666666666665
Q ss_pred cCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHh
Q 043943 483 KIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562 (775)
Q Consensus 483 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 562 (775)
..-..+.+...|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+.++..|++|..-+|++. ..| .+..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 55555666666666666666665333334556666666666666666 34566666666666666666665 344 5666
Q ss_pred hhccccEEECcCCcCccc-CCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 043943 563 LQLQLSELDLSQNFLEGE-IPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623 (775)
Q Consensus 563 l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n 623 (775)
++ +|+.+|+|.|+++.. +|... .-++|++||+++|.-.-..-..|..+..+..+++.-|
T Consensus 451 l~-qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 451 LP-QLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cC-cceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 66 677777777766532 22222 2267777777777644444455556666666666555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.5e-35 Score=315.24 Aligned_cols=464 Identities=29% Similarity=0.300 Sum_probs=344.5
Q ss_pred EEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECC
Q 043943 60 VVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLY 139 (775)
Q Consensus 60 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~ 139 (775)
++.+++..+.+-. .|.....+.-.|+.|++++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|.|.
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhcccccccc-CchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 6666666554432 12233344445999999999986 67888999999999999999888 678889999999999999
Q ss_pred CccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCcccc
Q 043943 140 SNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219 (775)
Q Consensus 140 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 219 (775)
+|.+. ..|.++..+.+|++|+++.|.+. .+|..+..+..++.+..++|..... ++... .+.+++..|.+.+.+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccch
Confidence 99887 88999999999999999999987 5688889999999999999932222 22222 888899999888888
Q ss_pred CccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCC
Q 043943 220 PSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSN 299 (775)
Q Consensus 220 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 299 (775)
+..+..+++ .|+|.+|.+. . ..+..+.+|+.|....|++.... ..-++|+.|+.+.|.++...+. ....
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~ 241 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPL 241 (1081)
T ss_pred hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccc
Confidence 888877777 7999999886 2 34678889999999999886321 2457899999999999844332 2346
Q ss_pred CCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEec
Q 043943 300 NLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG 379 (775)
Q Consensus 300 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 379 (775)
+|+.++++.|++++ +|.++..+.+|+.+++.+|+++ .+|..+....+|+.|.+..|.+. -+|......+.|++|+|.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 89999999999994 5699999999999999999996 56777888899999999999987 567777889999999999
Q ss_pred cceecccCCccCcCCCc-ccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccc
Q 043943 380 FNYFRGPIPKNFKNLTN-LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG 458 (775)
Q Consensus 380 ~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 458 (775)
.|++....+..+.-... |..+..+.|.+.... ..--..++.|+.|++.+|.++...-..+.++.+|+.|+|++|++..
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccc-cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 99998654433333332 566666666554322 1111334567777777777777766667777777777777777764
Q ss_pred cCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccC
Q 043943 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGN 538 (775)
Q Consensus 459 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 538 (775)
.....+.++..|+.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|+|.|+++...-.....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 33345667777777777777776 45666777777777777777775 455 5666677777777777665432221111
Q ss_pred cCCCCEEEccCCc
Q 043943 539 LLKVHYLNLSNNE 551 (775)
Q Consensus 539 l~~L~~L~Ls~n~ 551 (775)
.++|++|||++|.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 2556666666654
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.3e-33 Score=285.03 Aligned_cols=364 Identities=29% Similarity=0.372 Sum_probs=253.5
Q ss_pred CCCCCEEECCCCCCc-ccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943 82 FPDLLFLNLFNNELF-GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160 (775)
Q Consensus 82 l~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 160 (775)
++-+|-.|+++|.|+ +..|.....+++++.|.|....+. .+|..++.|.+|++|.+++|++. .+...+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 445666677777776 346677777777777777777766 56777777777777777777776 344566777777777
Q ss_pred EcccCcCcc-cCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccc
Q 043943 161 SLYNNSLSG-YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239 (775)
Q Consensus 161 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 239 (775)
++.+|++.. -+|..+.++..|..|||++|++. ..|..+...+++-+|+|++|+|..+....|.+++.|-.|+|++|++
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 777777653 35667777778888888888776 6677777778888888888888876666777888888888888888
Q ss_pred cccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc-ccCCccCCCCCCCCeeeccCccccCCCCcc
Q 043943 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN-GVIPSSIGNSNNLSILYLYSNQLSGSIPKE 318 (775)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 318 (775)
. .+|+.+..+.+|++|+|++|.+...-...+-.+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 7 66777788888888888888765332233445667777888776432 356777888888888888888887 67888
Q ss_pred CCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecc-cCCccCcCCCcc
Q 043943 319 IGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG-PIPKNFKNLTNL 397 (775)
Q Consensus 319 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L 397 (775)
+..+++|+.|+|++|+++.. ....+...+|++|+++.|+++ .+|..+..+++|+.|.+.+|.+.- -+|..++.+..|
T Consensus 241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 88888888888888888753 333455678888888888887 677777888888888777777653 356666666666
Q ss_pred cceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCc
Q 043943 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN 455 (775)
Q Consensus 398 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 455 (775)
+.+...+|.+. ..|+.+ ..|+.|+.|.|+.|.+. ..|..+.-++.|+.|++..|.
T Consensus 319 evf~aanN~LE-lVPEgl-cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGL-CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHHHhhccccc-cCchhh-hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 66666555442 333333 44555555555555544 344455555555555555543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3.5e-33 Score=283.64 Aligned_cols=371 Identities=27% Similarity=0.386 Sum_probs=262.0
Q ss_pred CCCCCCEEEccccccc-ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCe
Q 043943 225 KLKCLSNLNMSMNHLS-GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSI 303 (775)
Q Consensus 225 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 303 (775)
-++-.+-+++++|.++ +.+|.....++.++.|.|...++. .+|+.++.|.+|++|.+++|++..+ -..++.++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHH
Confidence 4566778899999988 578888889999999999988886 7888899999999999999988743 445788889999
Q ss_pred eeccCccccC-CCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccce
Q 043943 304 LYLYSNQLSG-SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNY 382 (775)
Q Consensus 304 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 382 (775)
+.+..|++.. -+|..+..+..|..|+|++|++. ..|..+..-.++-.|+|++|++..+....+.+++.|-.|+|++|.
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999888753 46777888899999999999988 457778888888899999999886555667788888889999988
Q ss_pred ecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccce-eecCcCcCCCCCCCEEEcccCcccccCC
Q 043943 383 FRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFH-GQISSDWGRFPQLGTLDFSVNNITGSIP 461 (775)
Q Consensus 383 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 461 (775)
+. .+|+.+..+.+|+.|.+++|.+...-...+ ..+.+|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 87 456677788888888888887643222211 33455666666665432 345666666667777777766666 566
Q ss_pred ccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccc-cCCccccCcC
Q 043943 462 PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN-AIPGSLGNLL 540 (775)
Q Consensus 462 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~ 540 (775)
+++-++++|+.|+||+|+++. .........+|++|+++.|+++ .+|.++..++.|+.|.+.+|+++- -+|..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 666666667777777666653 2223344456666666666666 566666666666666666665532 2455666666
Q ss_pred CCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCC
Q 043943 541 KVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP 606 (775)
Q Consensus 541 ~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 606 (775)
.|+.+..++|.+. ..|+.++.+. .|+.|.|++|++. .+|+++.-++.|+.||+..|.-.-..|
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~-kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCV-KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhH-HHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 6666666666553 5566666666 6666666666665 566666666666666666665443333
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=6.7e-23 Score=245.99 Aligned_cols=358 Identities=23% Similarity=0.268 Sum_probs=238.5
Q ss_pred CCCEEEEEcCCCCCcc-ccCccccCCCCCCCEEECCCCC------CcccCcccccCCC-CCCEEeCcCCCCCCCCchhcc
Q 043943 57 DERVVGINLTTTSLNG-TLDEFSFSSFPDLLFLNLFNNE------LFGIIPPQISQLF-KLQYLDLSANKLSGKIPPEIG 128 (775)
Q Consensus 57 ~~~v~~l~l~~~~~~~-~~~~~~~~~l~~L~~L~ls~~~------~~~~~~~~~~~l~-~L~~L~ls~n~~~~~~p~~~~ 128 (775)
+.+|.++.+.-..+.. .+...+|..+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..|
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 3467776665443322 2344578889999999886653 2334666676664 5999999988877 667766
Q ss_pred CCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEE
Q 043943 129 QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTL 208 (775)
Q Consensus 129 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 208 (775)
...+|++|++++|.+. .+|..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 4688999999998887 677788889999999998876555555 47788899999998887666788888888899999
Q ss_pred EcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943 209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 288 (775)
++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 998876555566554 6888888888888655555542 357888888888876 556544 5777888877764321
Q ss_pred c-------cCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC
Q 043943 289 G-------VIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361 (775)
Q Consensus 289 ~-------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 361 (775)
. ..+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|....
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 1 111112234567777777776666667777777777777777765444555544 56677777777765443
Q ss_pred CchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCc
Q 043943 362 SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHN 430 (775)
Q Consensus 362 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 430 (775)
.+|.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|.....++... ..+++|+.+++++|
T Consensus 840 ~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~-~~L~~L~~L~l~~C 903 (1153)
T PLN03210 840 TFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI-SKLKHLETVDFSDC 903 (1153)
T ss_pred ccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc-ccccCCCeeecCCC
Confidence 44332 245666666666665 345556666666666666544333333332 34455555555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.2e-23 Score=245.72 Aligned_cols=339 Identities=23% Similarity=0.264 Sum_probs=216.2
Q ss_pred ccccCCCCCcEEEccccc------CCCCCCccccCC-CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCc
Q 043943 245 SSIGNVRNLRSLFLYSNE------LSGSIPKEIGNL-RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPK 317 (775)
Q Consensus 245 ~~l~~l~~L~~L~l~~n~------~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 317 (775)
.+|..+++|+.|.+..+. +...+|..|..+ .+|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence 345566666666665432 122344555544 34777777766665 445444 3566777777777665 3455
Q ss_pred cCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcc
Q 043943 318 EIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397 (775)
Q Consensus 318 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 397 (775)
.+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 566677777777776654444553 5666777777777766556667777777777777777765444555544 56777
Q ss_pred cceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCccc-------ccCCccccCCCCC
Q 043943 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNIT-------GSIPPEIGNSSKL 470 (775)
Q Consensus 398 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~~~~L 470 (775)
+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+.++... ...+..+..+++|
T Consensus 707 ~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 77777777654444432 356777777777765 344433 4667777777654321 1112223345678
Q ss_pred cEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCC
Q 043943 471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550 (775)
Q Consensus 471 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 550 (775)
+.|++++|...+.+|..+.++++|+.|+|++|...+.+|..+ .+++|+.|++++|......|.. .++|+.|+|++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 888888877766777777788888888888776555666655 6777888888877655444432 356777888888
Q ss_pred cCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCc
Q 043943 551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ 600 (775)
Q Consensus 551 ~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 600 (775)
.++ .+|..+..++ +|+.|++++|+-...+|..+..++.|+.+++++|.
T Consensus 857 ~i~-~iP~si~~l~-~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 857 GIE-EVPWWIEKFS-NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCc-cChHHHhcCC-CCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 776 4677777777 78888887754444567777777778888877775
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-26 Score=224.87 Aligned_cols=387 Identities=21% Similarity=0.236 Sum_probs=235.3
Q ss_pred CCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEccc-CcccccCCccCCCCCCCCeeecc
Q 043943 229 LSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI-NRLNGVIPSSIGNSNNLSILYLY 307 (775)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~ 307 (775)
-..++|+.|.|+.+.+.+|+.+++|+.|+|++|.|+.+-|.+|..+++|.+|-+.+ |+|+......|.++..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34445555555544444555555555555555555555555555555554444433 55554444555555555555555
Q ss_pred CccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC------------CchhhccCCCCCcE
Q 043943 308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG------------SIPQAIGNLVELVS 375 (775)
Q Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~ 375 (775)
-|++.....+.|..+++|..|.+.+|.+..+--..|..+..++.+.+..|.+.. ..|..++......-
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 555555555555555555555555555554333355555555655555554321 11112222222222
Q ss_pred EEeccceecccCCccCcC-CCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccC
Q 043943 376 LLLGFNYFRGPIPKNFKN-LTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN 454 (775)
Q Consensus 376 L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 454 (775)
..+.+.++...-+..|.. ...+.+=..+.+......|...+..+++|+.|++++|+++.+.+.+|.+...+++|.|..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 222333333222222211 1122222233445666777887889999999999999999999999999999999999999
Q ss_pred cccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccC----------------CcCccCCCCC
Q 043943 455 NITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL----------------PPEIGTLTEL 518 (775)
Q Consensus 455 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~----------------~~~~~~l~~L 518 (775)
++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-.|++..-- ...-+....+
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~ 388 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFV 388 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchh
Confidence 988766678999999999999999999999999999999999999888763110 0011223446
Q ss_pred CEEECCCCccccc---CCcc---------ccCcCCCCEE-EccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943 519 ELLDLSENRLSNA---IPGS---------LGNLLKVHYL-NLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI 585 (775)
Q Consensus 519 ~~L~ls~n~l~~~---~~~~---------~~~l~~L~~L-~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l 585 (775)
+.+++++..+... .|+. -..++-+.+. ..|+.. ...+|..+. ....+|++.+|.++ .+|.+
T Consensus 389 ~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~-lk~lp~~iP---~d~telyl~gn~~~-~vp~~- 462 (498)
T KOG4237|consen 389 RQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKL-LKLLPRGIP---VDVTELYLDGNAIT-SVPDE- 462 (498)
T ss_pred ccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccc-hhhcCCCCC---chhHHHhcccchhc-ccCHH-
Confidence 6666666554321 1211 1123333322 223322 223443322 24567889999998 77777
Q ss_pred cCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCC
Q 043943 586 CNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYN 623 (775)
Q Consensus 586 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n 623 (775)
.+.+| .+|+++|+++..-...|.+++.|.+|-++||
T Consensus 463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 67788 9999999999888889999999999999987
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-25 Score=216.81 Aligned_cols=275 Identities=26% Similarity=0.286 Sum_probs=195.4
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCC-ccccccCcccccCCCCCCEEEc
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYS-NCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l 162 (775)
.-..++|..|.|+.+.+.+|+.+++||.||||+|.|+.+-|.+|..+++|-.|-+-+ |+|+......|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 566778888888877777888888888888888888878888888888776665555 7777555566788888888888
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCc------------cccCccCCCCCCCC
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS------------GFIPSTLGKLKCLS 230 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~l~~l~~L~ 230 (775)
..|++.-+....|..+++|..|.+..|.+...-...|..+..++.+.+..|.+. ...|..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 888887777778888888888888888776443446777777888777766521 12233344444444
Q ss_pred EEEcccccccccCCccccCCCCCcEE--Ec-ccccCCCCCCc-cccCCCCCCEEEcccCcccccCCccCCCCCCCCeeec
Q 043943 231 NLNMSMNHLSGAIPSSIGNVRNLRSL--FL-YSNELSGSIPK-EIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYL 306 (775)
Q Consensus 231 ~L~l~~n~~~~~~~~~l~~l~~L~~L--~l-~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 306 (775)
-..+.+.++....+..|... ++.+ .+ +.+...++.|. .|..+++|+.|++++|+++++-+.+|.+...+++|.|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 44444444443333322211 2222 11 22223333343 4778889999999999988888888888888999999
Q ss_pred cCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCC
Q 043943 307 YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360 (775)
Q Consensus 307 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 360 (775)
..|++.......|.++..|+.|+|++|+++...|.+|.....|.+|.+-.|.+.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 988887666667888888899999999998888888888888888888888765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.7e-19 Score=200.31 Aligned_cols=267 Identities=27% Similarity=0.315 Sum_probs=168.2
Q ss_pred CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEc
Q 043943 275 RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYL 354 (775)
Q Consensus 275 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 354 (775)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++.. |.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence 44567888888887 4565554 378888888888874 443 246777777777777743 432 356777777
Q ss_pred cCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCcccee
Q 043943 355 YRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHG 434 (775)
Q Consensus 355 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 434 (775)
++|.+.. +|.. ...|+.|++++|.++.. |. ..++|+.|++++|++++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~L-P~----------------------------~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSL-PV----------------------------LPPGLQELSVSDNQLAS 316 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccccc-cc----------------------------cccccceeECCCCcccc
Confidence 7776652 3321 13445555555554421 11 12456666666666654
Q ss_pred ecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccC
Q 043943 435 QISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGT 514 (775)
Q Consensus 435 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 514 (775)
. |. ...+|+.|++++|.+++ +|. ...+|++|+|++|++++ +|.. .++|+.|++++|++.+ +|..
T Consensus 317 L-p~---lp~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l--- 380 (788)
T PRK15387 317 L-PA---LPSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL--- 380 (788)
T ss_pred C-CC---CcccccccccccCcccc-ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---
Confidence 2 22 12346666677776663 342 12467777777777774 3432 3467777777777763 4532
Q ss_pred CCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEE
Q 043943 515 LTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKL 594 (775)
Q Consensus 515 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 594 (775)
..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|... .+|+.|++++|+++ .+|..++.++.|+.|
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~----~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP----SGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch----hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 3567788888888774 3432 3567888888888774 55432 26777888888887 678888888888888
Q ss_pred eCCCCcCcccCCccccC
Q 043943 595 NLSYNQLSGFIPNCFED 611 (775)
Q Consensus 595 ~ls~n~l~~~~p~~l~~ 611 (775)
+|++|++++..|..+..
T Consensus 451 dLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 451 NLEGNPLSERTLQALRE 467 (788)
T ss_pred ECCCCCCCchHHHHHHH
Confidence 88888888877766633
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=5.6e-19 Score=196.17 Aligned_cols=181 Identities=29% Similarity=0.434 Sum_probs=83.0
Q ss_pred CccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcc
Q 043943 204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLS 283 (775)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 283 (775)
+|+.|++++|+++.. |. ..++|+.|++++|.+.+ +|.. ...|+.|++++|.+++ +|.. ..+|++|+++
T Consensus 283 ~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence 344455555544422 22 12345555555555442 2221 1234445555555542 3321 1345555555
Q ss_pred cCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCc
Q 043943 284 INRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSI 363 (775)
Q Consensus 284 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 363 (775)
+|++++ +|.. ..+|+.|++++|.++. +|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +
T Consensus 351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-I 417 (788)
T PRK15387 351 DNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-L 417 (788)
T ss_pred CCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-C
Confidence 555552 2221 2344455555555542 3321 1345555555555553 2221 2345555555555543 3
Q ss_pred hhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccch
Q 043943 364 PQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISE 413 (775)
Q Consensus 364 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 413 (775)
|.. ..+|+.|++++|.++ .+|..+.++++|+.|++++|.+++..+.
T Consensus 418 P~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 418 PML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Ccc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 322 124455555555555 3455555566666666666666554443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=7.4e-19 Score=196.77 Aligned_cols=246 Identities=26% Similarity=0.440 Sum_probs=131.4
Q ss_pred CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEecc
Q 043943 108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS 187 (775)
Q Consensus 108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 187 (775)
+...|+++++.++ .+|..+. ++|+.|+|++|.++ .+|..+. ++|++|++++|.++. +|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECc
Confidence 3455566555555 3444332 35556666666555 3444332 355666666665553 233222 256666666
Q ss_pred CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCC
Q 043943 188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267 (775)
Q Consensus 188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 267 (775)
+|.+. .+|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++. +
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 66555 3444332 356666666666653 344332 35666666666665 2333322 356666666666653 3
Q ss_pred CccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCC
Q 043943 268 PKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR 347 (775)
Q Consensus 268 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 347 (775)
|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++. +|..+. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence 4332 2466666666666663 343332 46666777666665 3444332 466777777776664 333332 3
Q ss_pred cCcEEEccCCcCCCCchh----hccCCCCCcEEEeccceec
Q 043943 348 NLRLLYLYRNELSGSIPQ----AIGNLVELVSLLLGFNYFR 384 (775)
Q Consensus 348 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~ 384 (775)
.|+.|++++|++. .+|. ....++.+..+++.+|.+.
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5667777777665 2332 3334466677777777665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=1.4e-17 Score=186.65 Aligned_cols=245 Identities=27% Similarity=0.378 Sum_probs=105.4
Q ss_pred CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943 85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN 164 (775)
Q Consensus 85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 164 (775)
...|+++++.++ .+|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 445555555444 2333332 24555555555554 2333322 34555555555544 3333332 2455555555
Q ss_pred CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943 165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP 244 (775)
Q Consensus 165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 244 (775)
|.+.. +|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++. |..+. ++|+.|++++|.+.. +|
T Consensus 251 N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCcccc-CC
Confidence 55442 233222 24555555555544 2333322 2455555555554432 22221 244555555555442 23
Q ss_pred ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCC
Q 043943 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC 324 (775)
Q Consensus 245 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 324 (775)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++. +|..+. ..
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~-LP~~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN-LPENLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC-CCHhHH--HH
Confidence 222 1345555555555542 333321 44555555555544 233322 1345555555555542 233222 23
Q ss_pred CCeeeCcCCcCcCccCC----cCCCCCcCcEEEccCCcCC
Q 043943 325 LFDLELSMNNLTGVIPS----SIGNLRNLRLLYLYRNELS 360 (775)
Q Consensus 325 L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~l~~n~l~ 360 (775)
|+.|++++|++.. +|. .+..++.+..|++.+|++.
T Consensus 390 L~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 390 LQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5555555555542 222 1222344455555555543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=7e-19 Score=184.17 Aligned_cols=280 Identities=22% Similarity=0.264 Sum_probs=160.8
Q ss_pred eeeCcCCcCcC-ccCCcCCCCCcCcEEEccCCcCCCC----chhhccCCCCCcEEEeccceecccCCccCcCCCccccee
Q 043943 327 DLELSMNNLTG-VIPSSIGNLRNLRLLYLYRNELSGS----IPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVR 401 (775)
Q Consensus 327 ~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 401 (775)
.|+|..+.+++ .....+..+..|+.++++++.++.. ++..+...+.++.++++++.+.+. +..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHH----------
Confidence 35566666652 2333444556677777777776432 334444555566666666554320 0000
Q ss_pred ccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCC---CCCEEEcccCccccc----CCccccCC-CCCcEE
Q 043943 402 MNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP---QLGTLDFSVNNITGS----IPPEIGNS-SKLQVL 473 (775)
Q Consensus 402 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~~L~l~~n~l~~~----~~~~~~~~-~~L~~L 473 (775)
..++.. +..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+++. +...+..+ ++|+.|
T Consensus 71 -------~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 71 -------QSLLQG-LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred -------HHHHHH-HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 011111 13355666666666655443333333333 377777777766531 22234455 677777
Q ss_pred EccCCCccCc----CChhhhcCCCCCEEEcCCCcCccc----CCcCccCCCCCCEEECCCCcccccC----CccccCcCC
Q 043943 474 NLSSNHIGGK----IPMELGRLSSLNKLILNKNQLFGS----LPPEIGTLTELELLDLSENRLSNAI----PGSLGNLLK 541 (775)
Q Consensus 474 ~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~ 541 (775)
++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 7777777632 233455667777777777777632 2223445567888888887775432 234556777
Q ss_pred CCEEEccCCcCccCCchhHHhhh----ccccEEECcCCcCcc----cCCccccCCCCCcEEeCCCCcCccc----CCccc
Q 043943 542 VHYLNLSNNEFSHKIPTQFEKLQ----LQLSELDLSQNFLEG----EIPSQICNMESLVKLNLSYNQLSGF----IPNCF 609 (775)
Q Consensus 542 L~~L~Ls~n~l~~~~~~~~~~l~----~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~----~p~~l 609 (775)
|++|++++|.+++.....+.... ..|+.|++++|.++. .+...+..++.|+.+++++|.++.. ....+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 88888888887764444443321 378888888887762 3344556667888888888888755 33333
Q ss_pred cCC-CCCCEEeCCCCcc
Q 043943 610 EDM-HGLSSIDISYNRL 625 (775)
Q Consensus 610 ~~l-~~L~~l~ls~n~l 625 (775)
... ..|+.+++.+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 333 5677888877764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=2.6e-19 Score=187.45 Aligned_cols=86 Identities=29% Similarity=0.370 Sum_probs=35.3
Q ss_pred CCccEEEcccccCccc----cCccCCCCCCCCEEEccccccccc----CCccccCCCCCcEEEcccccCCCC----CCcc
Q 043943 203 TNLVTLHLFNNSLSGF----IPSTLGKLKCLSNLNMSMNHLSGA----IPSSIGNVRNLRSLFLYSNELSGS----IPKE 270 (775)
Q Consensus 203 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~ 270 (775)
++|+.|++++|.+++. ....+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++. +...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4445555555444411 122333344455555544444321 111222334455555554444322 1122
Q ss_pred ccCCCCCCEEEcccCccc
Q 043943 271 IGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 271 l~~l~~L~~L~l~~n~~~ 288 (775)
+..+++|++|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hcccCCCCEEecCCCcCc
Confidence 334445555555555444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=6.9e-19 Score=151.28 Aligned_cols=158 Identities=31% Similarity=0.471 Sum_probs=106.2
Q ss_pred ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943 78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157 (775)
Q Consensus 78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 157 (775)
.+..+.+++.|.||+|+++ .+|..+..+.+|++|++++|+++ .+|.+++.+++|++|+++-|++. ..|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3445667778888888887 55667888888888888888887 67778888888888888888776 778888888888
Q ss_pred CEEEcccCcCcc-cCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943 158 SLLSLYNNSLSG-YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236 (775)
Q Consensus 158 ~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (775)
+.||+.+|++.. ..|..|..++.|+.|.++.|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 888887777653 34555555555666666665554 44445555555555555555544 3344455555555555555
Q ss_pred cccc
Q 043943 237 NHLS 240 (775)
Q Consensus 237 n~~~ 240 (775)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 5554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.6e-18 Score=146.90 Aligned_cols=164 Identities=33% Similarity=0.531 Sum_probs=105.2
Q ss_pred ccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCC
Q 043943 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS 182 (775)
Q Consensus 103 ~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 182 (775)
+.++.+.+.|.||+|+++ .+|..++.+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|.+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-------------- 92 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------------
Confidence 345667777888888887 55666778888888888888877 66766777666666666655443
Q ss_pred EEeccCCcCcccCCcccCCCCCccEEEcccccCc-cccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccc
Q 043943 183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS-GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261 (775)
Q Consensus 183 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (775)
..|..|+.++.|++||+.+|++. ..+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+..|
T Consensus 93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred -----------cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 34445555555555555555543 334555666666666666666665 55666666666666666666
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcccccCCccCC
Q 043943 262 ELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIG 296 (775)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 296 (775)
.+. .+|..++.++.|++|.+.+|+++ .+|..++
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 665 56666666777777777777766 4444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.52 E-value=9.4e-14 Score=155.74 Aligned_cols=148 Identities=32% Similarity=0.521 Sum_probs=101.2
Q ss_pred CCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCC----CcccceeeCCC-----CCEEEEEcCCCCCccccCcc
Q 043943 7 SDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNL----CAWSGIYCNHD-----ERVVGINLTTTSLNGTLDEF 77 (775)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~----c~w~gv~c~~~-----~~v~~l~l~~~~~~~~~~~~ 77 (775)
...++|.+||+++|+++.. +.. .+|. ++.| |.|.|+.|... ..|+.|+|+++.+.|.+| .
T Consensus 368 ~t~~~~~~aL~~~k~~~~~-~~~--~~W~-------g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~ 436 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGL-PLR--FGWN-------GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-N 436 (623)
T ss_pred ccCchHHHHHHHHHHhcCC-ccc--CCCC-------CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-H
Confidence 3456789999999999964 322 4797 2233 37999999521 147777777777777776 5
Q ss_pred ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCC-CC
Q 043943 78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNL-SK 156 (775)
Q Consensus 78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~ 156 (775)
.+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..++++++|++|+|++|.+.+.+|..+... .+
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~ 516 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcccc
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777665542 23
Q ss_pred CCEEEcccC
Q 043943 157 QSLLSLYNN 165 (775)
Q Consensus 157 L~~L~l~~n 165 (775)
+..+++.+|
T Consensus 517 ~~~l~~~~N 525 (623)
T PLN03150 517 RASFNFTDN 525 (623)
T ss_pred CceEEecCC
Confidence 444444444
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.44 E-value=3.8e-13 Score=150.88 Aligned_cols=117 Identities=32% Similarity=0.578 Sum_probs=78.5
Q ss_pred CCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCC
Q 043943 542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDIS 621 (775)
Q Consensus 542 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls 621 (775)
++.|+|++|.+.+.+|..+..+. +|+.|+|++|.++|.+|..++.+++|+.|+|++|++++.+|..+..+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 55667777777767776666666 67777777777777777777777777777777777777777777777777777777
Q ss_pred CCcccccCCCCC--cCCCCCccccCCCcCCCCCCCCCCCCC
Q 043943 622 YNRLQGPVPFSK--AFRDAPAEALQGNRGLCGDDKGLSSCK 660 (775)
Q Consensus 622 ~n~l~~~~p~~~--~~~~~~~~~~~gn~~lc~~~~~~~~c~ 660 (775)
+|+++|.+|..- .........+.+|+.+|+. +....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCC-CCCCCCc
Confidence 777777776431 1122234467788889984 3445664
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=2.5e-13 Score=139.08 Aligned_cols=191 Identities=34% Similarity=0.484 Sum_probs=139.7
Q ss_pred CcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCC
Q 043943 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK 501 (775)
Q Consensus 422 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 501 (775)
-...|++.|++. .+|..++.|-.|+.+.+..|.+. .+|..+.++..|++|||+.|+++ ..|..+..|+ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 345666777765 56667777777777888777776 67777888888888888888887 4555555554 78888888
Q ss_pred CcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccC
Q 043943 502 NQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEI 581 (775)
Q Consensus 502 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~ 581 (775)
|+++ .+|..++....|..||.+.|.+. ..|..++.+.+|+.|.+..|++. ..|..+..+ .|..||+|+|+++ .+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFSCNKIS-YL 226 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecccCcee-ec
Confidence 8887 77778888888888888888887 45666788888888888888876 456667766 4888888888888 78
Q ss_pred CccccCCCCCcEEeCCCCcCcccCCccc---cCCCCCCEEeCCCC
Q 043943 582 PSQICNMESLVKLNLSYNQLSGFIPNCF---EDMHGLSSIDISYN 623 (775)
Q Consensus 582 p~~l~~l~~L~~L~ls~n~l~~~~p~~l---~~l~~L~~l~ls~n 623 (775)
|-+|.+|+.|++|-|.+|.+... |..+ ....-.++|+..-+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred chhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 88888888888888888888743 3322 22233455555555
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=1.8e-12 Score=132.85 Aligned_cols=174 Identities=33% Similarity=0.460 Sum_probs=103.4
Q ss_pred CCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEE
Q 043943 82 FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLS 161 (775)
Q Consensus 82 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 161 (775)
+..-...|++.|++. ++|..+..|..|+.+.|+.|.+. .+|..+.++..|.+|+|+.|++. .+|..++.|+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp------ 144 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP------ 144 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc------
Confidence 334445566666655 45555555555666666666555 45555666666666666666655 4455554443
Q ss_pred cccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc
Q 043943 162 LYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241 (775)
Q Consensus 162 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (775)
|+.|-+++|+++ .+|..++...+|..|+.+.|.+. .+|..++++.+|+.|.+..|++.
T Consensus 145 -------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~- 202 (722)
T KOG0532|consen 145 -------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE- 202 (722)
T ss_pred -------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-
Confidence 455555555554 45555555666666666666665 34555666666666666666665
Q ss_pred cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 288 (775)
.+|..+.. -.|..||++.|+++ .+|-.|.+|+.|++|.|.+|.+.
T Consensus 203 ~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 45555553 34666777777665 56666777777777777777665
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=4.1e-11 Score=137.11 Aligned_cols=128 Identities=31% Similarity=0.357 Sum_probs=83.4
Q ss_pred CCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCC--CcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCE
Q 043943 58 ERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNE--LFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSE 135 (775)
Q Consensus 58 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~--~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~ 135 (775)
..++++.+-++.+.... .-...+.|+.|-+.+|. +.......|..++.|++|||++|.--+.+|..++++-+|||
T Consensus 523 ~~~rr~s~~~~~~~~~~---~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA---GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhcc---CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34555555444433211 11234467777777775 44344445677788888888877665677877888888888
Q ss_pred EECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCC
Q 043943 136 LSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLN 189 (775)
Q Consensus 136 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 189 (775)
|+++++.+. .+|..+.++..|.+|++..+.....++.....+++|++|.+...
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 888887777 67777777777777777776655555666666777777776654
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.8e-10 Score=124.11 Aligned_cols=179 Identities=37% Similarity=0.574 Sum_probs=86.0
Q ss_pred CCCCCEEECCCccccccCcccccCCC-CCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEE
Q 043943 130 LSFLSELSLYSNCLNGSIPQSLGNLS-KQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTL 208 (775)
Q Consensus 130 l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 208 (775)
++.++.|++.+|.++ .++....... +|+.|++++|++... +..+..+++|+.|+++.|++. .+|...+..+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 344445555554444 3333333332 455555555444422 233444555555555555544 223222244555555
Q ss_pred EcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943 209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 288 (775)
++++|++.. +|........|++|.+++|.+. ..+..+.++.++..+.+.+|.+. ..+..+..+++++.|++++|.++
T Consensus 192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc
Confidence 555555542 2333333344555555555322 33344555555555555555554 22444555555666666666655
Q ss_pred ccCCccCCCCCCCCeeeccCccccCCCC
Q 043943 289 GVIPSSIGNSNNLSILYLYSNQLSGSIP 316 (775)
Q Consensus 289 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 316 (775)
.... +..+.+++.|+++++.+....+
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccc--ccccCccCEEeccCccccccch
Confidence 3322 5555666666666665554433
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=5.3e-11 Score=112.49 Aligned_cols=133 Identities=29% Similarity=0.275 Sum_probs=75.4
Q ss_pred ccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCC
Q 043943 174 VIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL 253 (775)
Q Consensus 174 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 253 (775)
.+..++.|+++|+++|.++ .+..+..-.++++.|+++.|.+... ..+..+++|+.|||++|.++ .+..+-.++.+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3444556777777777665 3444455566777777777776643 33666677777777777665 333444456666
Q ss_pred cEEEcccccCCCCCCccccCCCCCCEEEcccCcccccC-CccCCCCCCCCeeeccCcccc
Q 043943 254 RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVI-PSSIGNSNNLSILYLYSNQLS 312 (775)
Q Consensus 254 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~ 312 (775)
++|.|+.|.+.. -..+..+-+|..||+++|+|.... ...++++|.|+.+.+.+|.+.
T Consensus 355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 666666666542 123555566666666666654211 123444444444444444443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.3e-10 Score=121.99 Aligned_cols=177 Identities=41% Similarity=0.560 Sum_probs=74.4
Q ss_pred CCCCCEEEcccCcCcccCCcccCCCC-CCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEE
Q 043943 154 LSKQSLLSLYNNSLSGYIPPVIGNLI-SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNL 232 (775)
Q Consensus 154 l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 232 (775)
++.++.|++.+|.++.+ +....... +|+.|++++|.+. .+|..+..+++|+.|++++|++... +.....++.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhhe
Confidence 34444444444444432 22222232 4444555544443 2222344444455555554444422 2222244444455
Q ss_pred EcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc
Q 043943 233 NMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312 (775)
Q Consensus 233 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 312 (775)
++++|.+. .+|........|++|.+++|... ..+..+..+.++..+.+.+|++.. .+..+..+++++.|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc
Confidence 55544444 33333333333444444444322 223334444444444444444431 1333444444445555544444
Q ss_pred CCCCccCCCCCCCCeeeCcCCcCcCc
Q 043943 313 GSIPKEIGNLKCLFDLELSMNNLTGV 338 (775)
Q Consensus 313 ~~~~~~~~~l~~L~~L~l~~n~l~~~ 338 (775)
... . +..+.+++.|++++|.+...
T Consensus 269 ~i~-~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 SIS-S-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccc-c-ccccCccCEEeccCcccccc
Confidence 221 1 44444445555544444433
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.9e-11 Score=118.52 Aligned_cols=244 Identities=21% Similarity=0.170 Sum_probs=131.8
Q ss_pred CCCEEEEEcCCCCCccccC---ccccCCCCCCCEEECCCCC---CcccCcc-------cccCCCCCCEEeCcCCCCCCCC
Q 043943 57 DERVVGINLTTTSLNGTLD---EFSFSSFPDLLFLNLFNNE---LFGIIPP-------QISQLFKLQYLDLSANKLSGKI 123 (775)
Q Consensus 57 ~~~v~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~ls~~~---~~~~~~~-------~~~~l~~L~~L~ls~n~~~~~~ 123 (775)
...++.++|+++.+...-. ...+.+.++|+..++|+.- ....+|. ++..+++|++||||+|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3467788888877653211 1345566778887777642 2223443 3456678888888888775444
Q ss_pred chh----ccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCccc----C
Q 043943 124 PPE----IGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS----V 195 (775)
Q Consensus 124 p~~----~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~----~ 195 (775)
+.. +..+..|++|.|.+|.+.-.....++. .|..|. . ......-+.|+++...+|.+... +
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcceEEEEeeccccccccHHHH
Confidence 443 356777788888777653111111111 000000 0 01122234566666666655321 1
Q ss_pred CcccCCCCCccEEEcccccCcc----ccCccCCCCCCCCEEEcccccccc----cCCccccCCCCCcEEEcccccCCCCC
Q 043943 196 PFFLGNLTNLVTLHLFNNSLSG----FIPSTLGKLKCLSNLNMSMNHLSG----AIPSSIGNVRNLRSLFLYSNELSGSI 267 (775)
Q Consensus 196 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~ 267 (775)
...|...+.|+.+.+..|.+.. .+...|..+++|++|+|.+|.++. .+...+..+++|+.|++++|.+...-
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G 257 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG 257 (382)
T ss_pred HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence 1234455566666666665431 123445666667777776665542 22334455666777777777665433
Q ss_pred Cccc-----cCCCCCCEEEcccCccccc----CCccCCCCCCCCeeeccCccc
Q 043943 268 PKEI-----GNLRSLSNLDLSINRLNGV----IPSSIGNSNNLSILYLYSNQL 311 (775)
Q Consensus 268 ~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l 311 (775)
..+| ...++|+.|.+.+|.++.. +...+...+.|..|+|+.|.+
T Consensus 258 a~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 258 AIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3222 1356777777777776532 112234466777777777777
No 32
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.02 E-value=2.5e-10 Score=118.88 Aligned_cols=50 Identities=36% Similarity=0.636 Sum_probs=46.5
Q ss_pred ccccccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 724 LEGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 724 ~~~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
..+.|+|+||++||++|+++++||+||||.||||.++||+.||||++...
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~ 110 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSN 110 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCC
Confidence 34679999999999999999999999999999999999999999999764
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.01 E-value=2.4e-10 Score=130.91 Aligned_cols=153 Identities=29% Similarity=0.357 Sum_probs=108.0
Q ss_pred cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCC--CCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943 79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK--LSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK 156 (775)
Q Consensus 79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 156 (775)
..+....|...+.+|.+. .++.. ..++.|++|-+..|. +....+..|..++.|++|||++|.--+.+|..++.+-+
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred ccchhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 344567788888887765 23332 245579899888885 44344445788999999999988777788999999999
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCc--cccCccCCCCCCCCEEEc
Q 043943 157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS--GFIPSTLGKLKCLSNLNM 234 (775)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l 234 (775)
|++|+++++.+. .+|..+.++..|.+|++..+......+.....+++||+|.+...... ...-..+.++.+|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999998887 67888888889999998887655455666666888888888765421 222233344445554444
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.5e-11 Score=118.50 Aligned_cols=209 Identities=23% Similarity=0.215 Sum_probs=122.9
Q ss_pred cCCCCCCEEeCcCCCCCCCCc-hhccCCCCCCEEECCCccccccCc--ccccCCCCCCEEEcccCcCcccCCccc-CCCC
Q 043943 104 SQLFKLQYLDLSANKLSGKIP-PEIGQLSFLSELSLYSNCLNGSIP--QSLGNLSKQSLLSLYNNSLSGYIPPVI-GNLI 179 (775)
Q Consensus 104 ~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~ 179 (775)
.++.+|+...|.++......- .....|++++.|||+.|-+....+ .-...+++|+.|+++.|.+........ ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 355666666666665542111 234556667777777665553222 223456666777776666543322111 2456
Q ss_pred CCCEEeccCCcCcccC-CcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC--ccccCCCCCcEE
Q 043943 180 SLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP--SSIGNVRNLRSL 256 (775)
Q Consensus 180 ~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L 256 (775)
+|+.|.++.|.++... ......+++|+.|++..|....+......-+..|++|+|++|.+- ..+ ...+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 7777777777665321 122346677777777777533333344455667778888777765 222 345667778888
Q ss_pred EcccccCCCC-CCcc-----ccCCCCCCEEEcccCccccc-CCccCCCCCCCCeeeccCccccC
Q 043943 257 FLYSNELSGS-IPKE-----IGNLRSLSNLDLSINRLNGV-IPSSIGNSNNLSILYLYSNQLSG 313 (775)
Q Consensus 257 ~l~~n~~~~~-~~~~-----l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~ 313 (775)
+++.+.+.+. .|+. ...+++|++|++..|++... .-..+..+++|+.|.+..|.++.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 8877777653 2222 24568888888888887421 11234556777777877777763
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=2.4e-11 Score=117.76 Aligned_cols=217 Identities=22% Similarity=0.202 Sum_probs=99.0
Q ss_pred cccCCCCCCEEeCcCCCCCCC----CchhccCCCCCCEEECCCcccccc----CcccccCCCCCCEEEcccCcCcccCCc
Q 043943 102 QISQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLNGS----IPQSLGNLSKQSLLSLYNNSLSGYIPP 173 (775)
Q Consensus 102 ~~~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~ 173 (775)
.+..+..+++++||+|.+... +-..+.+.++|+..+++.- ++|. +|..+. ....
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~-----------------~l~~ 86 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALK-----------------MLSK 86 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHH-----------------HHHH
Confidence 445566777777777766432 2233455666777766642 3322 222110 0112
Q ss_pred ccCCCCCCCEEeccCCcCcccCCc----ccCCCCCccEEEcccccCccccC-------------ccCCCCCCCCEEEccc
Q 043943 174 VIGNLISLSTLDLSLNQLIGSVPF----FLGNLTNLVTLHLFNNSLSGFIP-------------STLGKLKCLSNLNMSM 236 (775)
Q Consensus 174 ~l~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~~L~l~~ 236 (775)
.+..+++|++|+||.|-+.-..+. .+.++..|+.|.|.+|.+.-... .....-+.|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 233444555555555543322221 12344555555555554431111 1122234556666555
Q ss_pred cccccc----CCccccCCCCCcEEEcccccCCCC----CCccccCCCCCCEEEcccCccccc----CCccCCCCCCCCee
Q 043943 237 NHLSGA----IPSSIGNVRNLRSLFLYSNELSGS----IPKEIGNLRSLSNLDLSINRLNGV----IPSSIGNSNNLSIL 304 (775)
Q Consensus 237 n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L 304 (775)
|++... +...|...+.|+.+.+..|.|... +...|..|++|+.|||..|.++.. +...+..+++|++|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 554321 112234445566666655554321 122345566666666666655432 12234445556666
Q ss_pred eccCccccCCCCccC-----CCCCCCCeeeCcCCcCc
Q 043943 305 YLYSNQLSGSIPKEI-----GNLKCLFDLELSMNNLT 336 (775)
Q Consensus 305 ~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~ 336 (775)
++++|.+......++ ...|.|+.|.+.+|.++
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 666655543322211 12345555555555544
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.1e-10 Score=110.27 Aligned_cols=129 Identities=29% Similarity=0.326 Sum_probs=73.1
Q ss_pred CCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEE
Q 043943 419 YPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLI 498 (775)
Q Consensus 419 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 498 (775)
+..|+++|+++|.++ .+..+..-.|.++.|++++|.+... ..+..+++|+.||||+|.++ .+..+=..+-++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 345666666666665 3444555566666777776666633 22666666777777766665 2333334556666666
Q ss_pred cCCCcCcccCCcCccCCCCCCEEECCCCcccccC-CccccCcCCCCEEEccCCcCc
Q 043943 499 LNKNQLFGSLPPEIGTLTELELLDLSENRLSNAI-PGSLGNLLKVHYLNLSNNEFS 553 (775)
Q Consensus 499 L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~ 553 (775)
|++|.+... ..+..+.+|..||+++|+|.... ...+++++.|+.+.|.+|.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 666665422 33455566666666666664321 233455555555555555554
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=9.8e-10 Score=100.42 Aligned_cols=126 Identities=29% Similarity=0.348 Sum_probs=42.3
Q ss_pred hcCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHH-hhhcc
Q 043943 489 GRLSSLNKLILNKNQLFGSLPPEIG-TLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFE-KLQLQ 566 (775)
Q Consensus 489 ~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~~ 566 (775)
.++.++++|+|++|.++. + +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++.. ...+. .++ +
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp-~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLP-N 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-T-T
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCC-c
Confidence 344566777777777653 2 2344 466777777777777654 2466677778888888877753 33343 345 7
Q ss_pred ccEEECcCCcCccc-CCccccCCCCCcEEeCCCCcCcccCC---ccccCCCCCCEEeC
Q 043943 567 LSELDLSQNFLEGE-IPSQICNMESLVKLNLSYNQLSGFIP---NCFEDMHGLSSIDI 620 (775)
Q Consensus 567 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~l 620 (775)
|++|++++|++... .-..+..+++|+.|++.+|+++...- ..+..+++|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888888877532 12455667778888888877764421 12455677777764
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-10 Score=116.24 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCCCCCEEECCCCccccc-CCccccCcCCCCEEEccCCcCc
Q 043943 514 TLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSNNEFS 553 (775)
Q Consensus 514 ~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~ 553 (775)
..++|++|++..|++..- .-..+..+++|+.|.+..|.++
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 445566666666655321 1122344455666666666664
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=4.8e-10 Score=102.46 Aligned_cols=109 Identities=29% Similarity=0.314 Sum_probs=31.1
Q ss_pred cCCCCCCCEEECCCCCCcccCccccc-CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccc-cCCCC
Q 043943 79 FSSFPDLLFLNLFNNELFGIIPPQIS-QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSL-GNLSK 156 (775)
Q Consensus 79 ~~~l~~L~~L~ls~~~~~~~~~~~~~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~ 156 (775)
+.+...+++|+|++|.|..+ +.++ .+.+|+.|++++|.++.. + .+..+++|++|++++|+++.. +..+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 34445667777777777633 2343 466777777777777633 2 466677777777777777633 3333 35667
Q ss_pred CCEEEcccCcCcccC-CcccCCCCCCCEEeccCCcCc
Q 043943 157 QSLLSLYNNSLSGYI-PPVIGNLISLSTLDLSLNQLI 192 (775)
Q Consensus 157 L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~ 192 (775)
|++|++++|++.... -..+..+++|++|++.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777777665432 234455566666666666554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=3.4e-10 Score=121.83 Aligned_cols=198 Identities=26% Similarity=0.255 Sum_probs=85.5
Q ss_pred cCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccC-ccCCCCCCCC
Q 043943 152 GNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIP-STLGKLKCLS 230 (775)
Q Consensus 152 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 230 (775)
..+++|++|++++|.|+.+ ..+..++.|+.|++++|.+.. ...+..++.|+.+++++|.+..+.+ . ...+.+|+
T Consensus 115 ~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~ 189 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLE 189 (414)
T ss_pred hhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchH
Confidence 3344444444444444333 122333334444444444431 1123334455555555555443322 1 34445555
Q ss_pred EEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCC--CCEEEcccCcccccCCccCCCCCCCCeeeccC
Q 043943 231 NLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS--LSNLDLSINRLNGVIPSSIGNSNNLSILYLYS 308 (775)
Q Consensus 231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 308 (775)
.+++.+|.+... ..+..+..+..+++..|.++..-+ +..+.. |+.+++++|++... +..+..+.++..+++.+
T Consensus 190 ~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 190 ELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSS 264 (414)
T ss_pred HHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhh
Confidence 555555554311 222333334444555554442211 112222 55555655555422 13344555555666665
Q ss_pred ccccCCCCccCCCCCCCCeeeCcCCcCcCc---cCC-cCCCCCcCcEEEccCCcCCC
Q 043943 309 NQLSGSIPKEIGNLKCLFDLELSMNNLTGV---IPS-SIGNLRNLRLLYLYRNELSG 361 (775)
Q Consensus 309 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~-~~~~~~~L~~L~l~~n~l~~ 361 (775)
|.+... ..+...+.+..+....+.+... ... .....+.++.+.+..|....
T Consensus 265 n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 265 NRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 555432 1233334444444555444321 111 13345566666666665544
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.77 E-value=9.3e-09 Score=70.06 Aligned_cols=42 Identities=33% Similarity=0.826 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCC-CCCCCcccceeeC
Q 043943 9 STEEARALLKWKTSLQIHSRSLLPSWTLSPVNAT-KKNLCAWSGIYCN 55 (775)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~c~w~gv~c~ 55 (775)
+++|++||++||+++..+|.+.+.+|. .. ..+||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~-----~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWN-----PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT-------TT--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCC-----CcCCCCCeeeccEEeC
Confidence 468999999999999976778999998 23 3799999999995
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=8.7e-10 Score=118.66 Aligned_cols=222 Identities=30% Similarity=0.366 Sum_probs=104.8
Q ss_pred ccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCC
Q 043943 151 LGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS 230 (775)
Q Consensus 151 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 230 (775)
+..+++|+.|++.+|.+..+.. .+..+++|++|++++|.++...+ +..++.|+.|++.+|.+..+ ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhccc-chhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhh
Confidence 4444555555555555443321 14455666666666666553222 34455566666666665533 3444456666
Q ss_pred EEEcccccccccCC-ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCC--CCeeecc
Q 043943 231 NLNMSMNHLSGAIP-SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNN--LSILYLY 307 (775)
Q Consensus 231 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~ 307 (775)
.+++++|.+....+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..-+ +..+.. |+.+++.
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcc
Confidence 66666666553333 1 34555566666666655421 223333444444555555543211 112222 5566666
Q ss_pred CccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCC---chh-hccCCCCCcEEEecccee
Q 043943 308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGS---IPQ-AIGNLVELVSLLLGFNYF 383 (775)
Q Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~l~~n~l 383 (775)
+|.+.. .+..+..+..+..+++.+|++.... .+...+.+..+....+.+... ... .....+.+..+.+..|..
T Consensus 241 ~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 241 GNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 665552 2233445555666666665554321 122333444444444443311 011 123344455555555544
Q ss_pred cc
Q 043943 384 RG 385 (775)
Q Consensus 384 ~~ 385 (775)
..
T Consensus 318 ~~ 319 (414)
T KOG0531|consen 318 RK 319 (414)
T ss_pred cc
Confidence 43
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=1.6e-08 Score=75.77 Aligned_cols=59 Identities=41% Similarity=0.598 Sum_probs=33.8
Q ss_pred CCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCc
Q 043943 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE 551 (775)
Q Consensus 493 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 551 (775)
+|++|++++|+++...+..|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555566666666666555555556666666666666554
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.1e-08 Score=76.65 Aligned_cols=60 Identities=37% Similarity=0.558 Sum_probs=50.0
Q ss_pred cccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcc
Q 043943 566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRL 625 (775)
Q Consensus 566 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l 625 (775)
+|+.|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 678888888888866667888888888888888888888888888888888888888864
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3.9e-09 Score=100.11 Aligned_cols=176 Identities=22% Similarity=0.153 Sum_probs=81.6
Q ss_pred CCCEEeCcCCCCCCC-CchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCccc--CCcccCCCCCCCEE
Q 043943 108 KLQYLDLSANKLSGK-IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY--IPPVIGNLISLSTL 184 (775)
Q Consensus 108 ~L~~L~ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L 184 (775)
.|++||||+..++.. +-..+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.++=-.. ..-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355666665554421 222245556666666666665555555555556666666655431111 11223455566666
Q ss_pred eccCCcCcccCCcc-cC-CCCCccEEEcccccC---ccccCccCCCCCCCCEEEccccc-ccccCCccccCCCCCcEEEc
Q 043943 185 DLSLNQLIGSVPFF-LG-NLTNLVTLHLFNNSL---SGFIPSTLGKLKCLSNLNMSMNH-LSGAIPSSIGNVRNLRSLFL 258 (775)
Q Consensus 185 ~l~~n~~~~~~~~~-~~-~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l 258 (775)
++++|.+....-.. +. --++|+.|+++++.- ...+..-...+++|.+|||++|. ++......|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66665443211110 11 113455555555431 11111222355666666666542 33223333445556666666
Q ss_pred ccccCCCCCCcc---ccCCCCCCEEEcccC
Q 043943 259 YSNELSGSIPKE---IGNLRSLSNLDLSIN 285 (775)
Q Consensus 259 ~~n~~~~~~~~~---l~~l~~L~~L~l~~n 285 (775)
+.|.. ++|.. +...++|.+||+.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 55542 33332 334455555555443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2.6e-08 Score=105.71 Aligned_cols=178 Identities=25% Similarity=0.289 Sum_probs=101.9
Q ss_pred CCCCCEEEcccCcccccC-CccccCCCCCcEEEccCCCccCc---CC--hh----------------hhc----------
Q 043943 443 FPQLGTLDFSVNNITGSI-PPEIGNSSKLQVLNLSSNHIGGK---IP--ME----------------LGR---------- 490 (775)
Q Consensus 443 ~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~---~~--~~----------------l~~---------- 490 (775)
+++++.|.+-.-.-.+.. |-.+....+|++|.+.+|.+... .+ .. |..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~ 162 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV 162 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh
Confidence 344555544332221111 44566788999999999987631 11 00 000
Q ss_pred CCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943 491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL 570 (775)
Q Consensus 491 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L 570 (775)
...|...+.++|.+. .+...+.-++.|+.|+|++|+++... .+..|+.|++|||+.|.+.. +|. +..-.-.|+.|
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~-l~~~gc~L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQ-LSMVGCKLQLL 237 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccc-cchhhhhheee
Confidence 123445555556554 34445566677777777777776542 66777777777777777753 221 11111157777
Q ss_pred ECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCC-ccccCCCCCCEEeCCCCcccc
Q 043943 571 DLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP-NCFEDMHGLSSIDISYNRLQG 627 (775)
Q Consensus 571 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~l~ls~n~l~~ 627 (775)
++++|.++.. ..+.++.+|+.||+++|-+.+.-. .-+..+..|..|++.+|++.+
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 7777776522 345667777777777777665422 123344566777777777765
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.8e-08 Score=94.38 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=66.0
Q ss_pred cccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCc-cccc-CCccccCCCCCcEE
Q 043943 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNN-ITGS-IPPEIGNSSKLQVL 473 (775)
Q Consensus 396 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L 473 (775)
.|+.++++...++..........|.+|+.|.+.++++.+.+...+..-.+|+.|+|+.|. ++.. ..-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666666555555555667777777777777776666666666777777777653 2211 11235677778888
Q ss_pred EccCCCccCcCChhh--hcCCCCCEEEcCCCc
Q 043943 474 NLSSNHIGGKIPMEL--GRLSSLNKLILNKNQ 503 (775)
Q Consensus 474 ~Ls~n~l~~~~~~~l--~~l~~L~~L~L~~n~ 503 (775)
+|+.|.+........ .--++|+.|+|+|+.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 888777654432221 113566777777653
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=5.3e-08 Score=103.41 Aligned_cols=125 Identities=31% Similarity=0.319 Sum_probs=63.3
Q ss_pred CCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCc-CccCCCCCCEEEC
Q 043943 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP-EIGTLTELELLDL 523 (775)
Q Consensus 445 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~l 523 (775)
.|.+.+++.|.+. .....+.-++.|+.|+|+.|++.... .+..|+.|+.|||++|.+. .+|. ....+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4455555555554 33445555566666666666655332 4555666666666666665 2222 112222 566666
Q ss_pred CCCcccccCCccccCcCCCCEEEccCCcCccCCc-hhHHhhhccccEEECcCCcC
Q 043943 524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIP-TQFEKLQLQLSELDLSQNFL 577 (775)
Q Consensus 524 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~~L~~L~Ls~n~l 577 (775)
++|.++.. ..+.++.+|..||++.|-+.+..- ..+..+. .|+.|+|.+|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCcc
Confidence 66655432 234455566666666665543211 1223333 555566666544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=6.4e-07 Score=85.40 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCCCCEEEcccCcccccC-CccCCCCCCCCeeeccCccccCC-CCccCCCCCCCCeeeCcCCcCc
Q 043943 274 LRSLSNLDLSINRLNGVI-PSSIGNSNNLSILYLYSNQLSGS-IPKEIGNLKCLFDLELSMNNLT 336 (775)
Q Consensus 274 l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 336 (775)
++++..+.+..|.+.... ...+..++.+..|+|+.+++..- ..+++.+++.|..|.++++++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 345555555555443221 12233344444555555554321 1123444555555555555544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=5.8e-07 Score=85.66 Aligned_cols=85 Identities=22% Similarity=0.224 Sum_probs=39.5
Q ss_pred CCCCCeeeCcCCcCcCc--cCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC-CccCcCCCccc
Q 043943 322 LKCLFDLELSMNNLTGV--IPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI-PKNFKNLTNLV 398 (775)
Q Consensus 322 l~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 398 (775)
++.++++++.+|.++.. +...+.++|.|+.|+++.|++...+...-....+|+.|-+.+..+.... ...+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34455555555555432 2223445556666666655555333221123445555555554443321 12234455555
Q ss_pred ceeccccc
Q 043943 399 RVRMNQNN 406 (775)
Q Consensus 399 ~L~l~~n~ 406 (775)
.++++.|+
T Consensus 150 elHmS~N~ 157 (418)
T KOG2982|consen 150 ELHMSDNS 157 (418)
T ss_pred hhhhccch
Confidence 55555553
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=4.3e-07 Score=85.36 Aligned_cols=213 Identities=21% Similarity=0.181 Sum_probs=105.7
Q ss_pred ccCCCCCCEEeCcCCCCCCCC----chhccCCCCCCEEECCCcccccc----Cc-------ccccCCCCCCEEEcccCcC
Q 043943 103 ISQLFKLQYLDLSANKLSGKI----PPEIGQLSFLSELSLYSNCLNGS----IP-------QSLGNLSKQSLLSLYNNSL 167 (775)
Q Consensus 103 ~~~l~~L~~L~ls~n~~~~~~----p~~~~~l~~L~~L~L~~n~~~~~----~~-------~~~~~l~~L~~L~l~~n~~ 167 (775)
+..+..++.++||+|.+...- ...+.+-++|+..+++.- ++|. ++ ..+-+|++|+.++|+.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 444667777777777665332 222445566666666553 2221 11 1233444445444444444
Q ss_pred cccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccC-------------ccCCCCCCCCEEEc
Q 043943 168 SGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIP-------------STLGKLKCLSNLNM 234 (775)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~~L~l 234 (775)
....|..+. +.+++-..|+.|.+++|.+.-+.- .-...-|.|+++..
T Consensus 105 g~~~~e~L~--------------------d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 105 GSEFPEELG--------------------DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred CcccchHHH--------------------HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 333222110 122344445555555554321100 11123466777777
Q ss_pred ccccccccCCc-----cccCCCCCcEEEcccccCCCC-----CCccccCCCCCCEEEcccCcccccC----CccCCCCCC
Q 043943 235 SMNHLSGAIPS-----SIGNVRNLRSLFLYSNELSGS-----IPKEIGNLRSLSNLDLSINRLNGVI----PSSIGNSNN 300 (775)
Q Consensus 235 ~~n~~~~~~~~-----~l~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~ 300 (775)
..|++.. .+. .+..-..|+.+.+..|.|.-. +-..+..+.+|+.||+..|.++-.. ...+...+.
T Consensus 165 grNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 165 GRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred ccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 7776642 221 122335677777777765422 1112345677888888888765322 223344456
Q ss_pred CCeeeccCccccCCCCccC------CCCCCCCeeeCcCCcCcC
Q 043943 301 LSILYLYSNQLSGSIPKEI------GNLKCLFDLELSMNNLTG 337 (775)
Q Consensus 301 L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~l~~n~l~~ 337 (775)
|++|.+.+|-++......+ ...|+|..|...+|...+
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 7777777776654332221 124566666666665543
No 52
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.03 E-value=1.3e-05 Score=81.65 Aligned_cols=27 Identities=44% Similarity=0.709 Sum_probs=24.4
Q ss_pred eEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943 744 YCIGKGAQGSLYKAKLQSEDLIAVKKFN 771 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~ 771 (775)
.+||+|+||+||||.| +++.||||.+.
T Consensus 216 eli~~Grfg~V~KaqL-~~~~VAVKifp 242 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQL-DNRLVAVKIFP 242 (534)
T ss_pred HHhhcCccceeehhhc-cCceeEEEecC
Confidence 4599999999999999 66999999984
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=5.9e-07 Score=75.55 Aligned_cols=86 Identities=24% Similarity=0.361 Sum_probs=40.0
Q ss_pred hcCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccc
Q 043943 489 GRLSSLNKLILNKNQLFGSLPPEIG-TLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQL 567 (775)
Q Consensus 489 ~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L 567 (775)
.....|+..+|++|.+. ..|..|. ..+.++.|+|++|.++. +|..+..++.|+.|+++.|.+. ..|..+..+. ++
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~-~l 125 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI-KL 125 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHH-hH
Confidence 33444445555555554 2222222 23345555555555542 3344555555555555555554 2334444444 45
Q ss_pred cEEECcCCcCc
Q 043943 568 SELDLSQNFLE 578 (775)
Q Consensus 568 ~~L~Ls~n~l~ 578 (775)
..|+..+|.+.
T Consensus 126 ~~Lds~~na~~ 136 (177)
T KOG4579|consen 126 DMLDSPENARA 136 (177)
T ss_pred HHhcCCCCccc
Confidence 55555555444
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.95 E-value=8.5e-07 Score=83.43 Aligned_cols=86 Identities=22% Similarity=0.260 Sum_probs=53.5
Q ss_pred CCEEEEEcCCCCCccccCc---cccCCCCCCCEEECCCCC---CcccCc-------ccccCCCCCCEEeCcCCCCCCCCc
Q 043943 58 ERVVGINLTTTSLNGTLDE---FSFSSFPDLLFLNLFNNE---LFGIIP-------PQISQLFKLQYLDLSANKLSGKIP 124 (775)
Q Consensus 58 ~~v~~l~l~~~~~~~~~~~---~~~~~l~~L~~L~ls~~~---~~~~~~-------~~~~~l~~L~~L~ls~n~~~~~~p 124 (775)
..++.++|+++.+...-.+ ..+.+-++|+..++++-- ..+.++ .++.+|++|+..+||.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4577788888877543210 244556677777777642 122222 345677888888888887765544
Q ss_pred hh----ccCCCCCCEEECCCccc
Q 043943 125 PE----IGQLSFLSELSLYSNCL 143 (775)
Q Consensus 125 ~~----~~~l~~L~~L~L~~n~~ 143 (775)
.. ++.-..|++|.+++|.+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC
Confidence 43 45667788888877755
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.94 E-value=4.3e-07 Score=76.33 Aligned_cols=105 Identities=24% Similarity=0.316 Sum_probs=65.2
Q ss_pred CCEEEcccCccccc--CCccccCCCCCcEEEccCCCccCcCChhh-hcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEE
Q 043943 446 LGTLDFSVNNITGS--IPPEIGNSSKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLFGSLPPEIGTLTELELLD 522 (775)
Q Consensus 446 L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 522 (775)
+..++|+.|++... .+..+.....|+..+|++|.+... |..| ...+.++.|++++|.+. .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 34445555544311 122344555666667777777643 3333 34557777777777776 5666677777777777
Q ss_pred CCCCcccccCCccccCcCCCCEEEccCCcCc
Q 043943 523 LSENRLSNAIPGSLGNLLKVHYLNLSNNEFS 553 (775)
Q Consensus 523 ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 553 (775)
++.|.+. ..|..+..+.++-.|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7777776 34555555777777777777665
No 56
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=97.91 E-value=1.1e-05 Score=87.26 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=42.0
Q ss_pred cccccHHHHHHHhcccccc---------eEeecCCCCcEEEEEeC----CCCEEEEEEccCCC
Q 043943 725 EGKITYDQIIRATNDFDEE---------YCIGKGAQGSLYKAKLQ----SEDLIAVKKFNSQL 774 (775)
Q Consensus 725 ~~~~~~~~l~~aT~~f~~~---------~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~~~ 774 (775)
...++|+|--+|.+.|+.+ .+||.|.||.||+|.|. ....||||.|+.+.
T Consensus 607 iDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~Gy 669 (996)
T KOG0196|consen 607 IDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGY 669 (996)
T ss_pred cCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCc
Confidence 3568999999998888764 89999999999999995 23579999998764
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=6.8e-05 Score=77.51 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=87.1
Q ss_pred cCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCC
Q 043943 440 WGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELE 519 (775)
Q Consensus 440 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 519 (775)
+..+.+++.|++++|.++ .+| .-.++|+.|.+++|.-...+|..+ .++|++|++++|.....+| .+|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 345688999999999777 445 234579999998866545666544 3589999999884333444 3577
Q ss_pred EEECCCCcccccCCccccCcCCCCEEEccCCc-Cc-cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCC
Q 043943 520 LLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE-FS-HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLS 597 (775)
Q Consensus 520 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~-~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 597 (775)
.|+++.+..... +. -.++|+.|.+.+++ .. ..+| ..++.+|+.|++++|... ..|..+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~L-~~---LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDSI-KN---VPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCccc-cc---CcchHhheeccccccccccccc---cccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 777776654321 11 12356777775432 11 1111 124458899999888765 4454443 578888887
Q ss_pred CCc
Q 043943 598 YNQ 600 (775)
Q Consensus 598 ~n~ 600 (775)
.|.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.76 E-value=6.2e-05 Score=66.54 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=32.6
Q ss_pred cccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943 77 FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK 156 (775)
Q Consensus 77 ~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 156 (775)
..|..+++|+.+.+.. .+..+...+|..+++|+.+.+..+ +.......|.++++|+.+.+.. .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455555555555553 344344445555555555555543 3333333455555555555543 222222333444444
Q ss_pred CCEEEcc
Q 043943 157 QSLLSLY 163 (775)
Q Consensus 157 L~~L~l~ 163 (775)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.71 E-value=0.00014 Score=64.24 Aligned_cols=36 Identities=8% Similarity=0.059 Sum_probs=11.1
Q ss_pred ccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943 127 IGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY 163 (775)
Q Consensus 127 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 163 (775)
|.++.+|+.+.+.. .+..+....|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEES
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccc
Confidence 44444444444442 2332333334444444444433
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=3.8e-05 Score=52.34 Aligned_cols=36 Identities=39% Similarity=0.664 Sum_probs=16.0
Q ss_pred CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccc
Q 043943 108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN 144 (775)
Q Consensus 108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 144 (775)
+|++|++++|.++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555444 23333445555555555555444
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=3.9e-05 Score=52.29 Aligned_cols=37 Identities=43% Similarity=0.690 Sum_probs=24.6
Q ss_pred cccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcc
Q 043943 566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSG 603 (775)
Q Consensus 566 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 603 (775)
+|++|++++|+++ .+|..++++++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5677777777777 455567777777777777777664
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=0.00012 Score=66.42 Aligned_cols=58 Identities=28% Similarity=0.273 Sum_probs=26.2
Q ss_pred CCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCc
Q 043943 109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS 168 (775)
Q Consensus 109 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 168 (775)
...+||++|.+... ..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.|.+|++.
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 34455555544311 12444555555555555555443333333444444444444443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00016 Score=65.65 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=66.0
Q ss_pred CCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCccc-CCccccCCCCCcEEe
Q 043943 517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE-IPSQICNMESLVKLN 595 (775)
Q Consensus 517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ 595 (775)
+...+||++|.+... +.|..++.|.+|.|++|+|+..-|. +....+.|..|.|.+|++... .-.-+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455667777766432 3455666777777777777755443 333333677777777766521 123466788888888
Q ss_pred CCCCcCcccCC---ccccCCCCCCEEeCCCCc
Q 043943 596 LSYNQLSGFIP---NCFEDMHGLSSIDISYNR 624 (775)
Q Consensus 596 ls~n~l~~~~p---~~l~~l~~L~~l~ls~n~ 624 (775)
+-+|+++...- ..+..+++|++||++.-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88888765432 235677888888876443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.1e-05 Score=87.16 Aligned_cols=149 Identities=21% Similarity=0.184 Sum_probs=77.5
Q ss_pred CCCCEEeCcCCCC-CCCCchhc-cCCCCCCEEECCCcccccc-CcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCE
Q 043943 107 FKLQYLDLSANKL-SGKIPPEI-GQLSFLSELSLYSNCLNGS-IPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST 183 (775)
Q Consensus 107 ~~L~~L~ls~n~~-~~~~p~~~-~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 183 (775)
.+|++||+++... ...-|..+ ..+|+|+.|.+++-.+... .-.-..++++|..||+++++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566666666432 22223333 2356666666666444321 112234566666666666666544 45566666666
Q ss_pred EeccCCcCcc-cCCcccCCCCCccEEEcccccCccc------cCccCCCCCCCCEEEcccccccccCCccc-cCCCCCcE
Q 043943 184 LDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGF------IPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVRNLRS 255 (775)
Q Consensus 184 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~ 255 (775)
|.+.+-.+.. ..-..+.++++|++||++....... --+.-..+|+|+.||.+++.+...+-+.+ ...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6666544432 1112345677777777775443211 01223457888888888877665433322 22344444
Q ss_pred EE
Q 043943 256 LF 257 (775)
Q Consensus 256 L~ 257 (775)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 43
No 65
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.49 E-value=0.00033 Score=71.22 Aligned_cols=29 Identities=34% Similarity=0.585 Sum_probs=26.2
Q ss_pred ceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 743 EYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 743 ~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
...||+|.||.|+||.| -|+.||||.+..
T Consensus 216 ~e~IGkGRyGEVwrG~w-rGe~VAVKiF~s 244 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRW-RGEDVAVKIFSS 244 (513)
T ss_pred EEEecCccccceeeccc-cCCceEEEEecc
Confidence 37799999999999999 889999999864
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.48 E-value=0.00034 Score=72.49 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=34.5
Q ss_pred CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCc
Q 043943 80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSN 141 (775)
Q Consensus 80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n 141 (775)
..+.+++.|++++|.++ .+|. + -.+|++|++++|.--..+|..+ .++|++|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34577888888887665 3341 1 1357888887754433555544 246777777776
No 67
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=97.44 E-value=0.00038 Score=76.11 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=27.1
Q ss_pred ccceEeecCCCCcEEEEEe-CCCC----EEEEEEccCC
Q 043943 741 DEEYCIGKGAQGSLYKAKL-QSED----LIAVKKFNSQ 773 (775)
Q Consensus 741 ~~~~~iG~Gg~G~VYkg~l-~~g~----~vAVK~l~~~ 773 (775)
....+||+|+||+||||.| |+|. +||+|.+...
T Consensus 699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~ 736 (1177)
T KOG1025|consen 699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEF 736 (1177)
T ss_pred hhhceeccccceeEEeeeEecCCceecceeEEEEeecc
Confidence 3457899999999999998 6664 7999998653
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=4.2e-05 Score=86.10 Aligned_cols=125 Identities=18% Similarity=0.249 Sum_probs=64.7
Q ss_pred CCCCCEEEcccCccccc-CCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcc-cCCcCccCCCCCCE
Q 043943 443 FPQLGTLDFSVNNITGS-IPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFG-SLPPEIGTLTELEL 520 (775)
Q Consensus 443 ~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~ 520 (775)
+|+|+.|.+.+-.+... +.....+.++|..||+|+.+++.. ..++.+++|+.|.+.+-.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 45555555554433211 122334555666666666555533 445566666666665554432 11123455666666
Q ss_pred EECCCCcccccC------CccccCcCCCCEEEccCCcCccCCchhHHhhhccccE
Q 043943 521 LDLSENRLSNAI------PGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSE 569 (775)
Q Consensus 521 L~ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~ 569 (775)
||+|........ -+.-..++.|+.||.|++.+...+-+.+..-.++|+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 666665433211 1223346777777777777766555555444334443
No 69
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.35 E-value=0.00021 Score=75.52 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=31.5
Q ss_pred cccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943 727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL 774 (775)
Q Consensus 727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~ 774 (775)
.+.++|+.-+ ..||+|.||+||||.|.+ .||||.|+.+.
T Consensus 388 eIp~~ev~l~-------~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~ 426 (678)
T KOG0193|consen 388 EIPPEEVLLG-------ERIGSGSFGTVYRGRWHG--DVAVKLLNVDD 426 (678)
T ss_pred ccCHHHhhcc-------ceeccccccceeeccccc--ceEEEEEecCC
Confidence 4677887665 459999999999999954 59999998654
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=4.4e-06 Score=83.76 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=16.1
Q ss_pred CCCcEEeCCCccce-eecCcCcCCCCCCCEEEcccC
Q 043943 420 PTLSFLDLSHNNFH-GQISSDWGRFPQLGTLDFSVN 454 (775)
Q Consensus 420 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n 454 (775)
..|+.+.++++... ...-+.+..+++|+.+++-++
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 34555555555432 122233444555555555554
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.15 E-value=9.7e-06 Score=81.36 Aligned_cols=82 Identities=22% Similarity=0.148 Sum_probs=38.9
Q ss_pred CccEEEcccccCccc--cCccCCCCCCCCEEEccccc-ccccCCccc-cCCCCCcEEEcccc-cCCCCCCcc-ccCCCCC
Q 043943 204 NLVTLHLFNNSLSGF--IPSTLGKLKCLSNLNMSMNH-LSGAIPSSI-GNVRNLRSLFLYSN-ELSGSIPKE-IGNLRSL 277 (775)
Q Consensus 204 ~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l-~~l~~L~~L~l~~n-~~~~~~~~~-l~~l~~L 277 (775)
.|+.|.+.++.-.+. .-.....++++++|.+.++. ++...-..+ ..+++|++|++..| .++...... ...|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 467777776653322 12233466677777666654 111111111 23566666666653 222222111 1245566
Q ss_pred CEEEcccC
Q 043943 278 SNLDLSIN 285 (775)
Q Consensus 278 ~~L~l~~n 285 (775)
++|+++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 66666554
No 72
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.05 E-value=0.00047 Score=75.15 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=31.5
Q ss_pred HhcccccceEeecCCCCcEEEEEe-----------------CCCCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKL-----------------QSEDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l-----------------~~g~~vAVK~l~~ 772 (775)
.+++|...++||+||||.||||.+ .+++.||||++..
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~ 196 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNM 196 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecc
Confidence 467899999999999999999975 2467899999863
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00046 Score=65.69 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCCCCCEEEcccCcccccCCccccCCCCCcEEEccCC--CccCcCChhhhcCCCCCEEEcCCCcCc
Q 043943 442 RFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN--HIGGKIPMELGRLSSLNKLILNKNQLF 505 (775)
Q Consensus 442 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~l~~l~~L~~L~L~~n~~~ 505 (775)
.+..|+.+.+.+..++.. ..|..+++|++|.++.| ++.+.++.....+|+|++|++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344455555555444422 23445556666666666 444444444445566666666666654
No 74
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.00083 Score=66.89 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=30.2
Q ss_pred ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCCC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQL 774 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~~ 774 (775)
.+.+.+++|.|+||.||+|++. .+..|||||..++.
T Consensus 25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~ 61 (364)
T KOG0658|consen 25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDK 61 (364)
T ss_pred EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCC
Confidence 3455689999999999999995 46899999987754
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00059 Score=64.94 Aligned_cols=62 Identities=29% Similarity=0.352 Sum_probs=32.4
Q ss_pred CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCC--CCCCCCchhccCCCCCCEEECCCcccc
Q 043943 81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSAN--KLSGKIPPEIGQLSFLSELSLYSNCLN 144 (775)
Q Consensus 81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n--~~~~~~p~~~~~l~~L~~L~L~~n~~~ 144 (775)
.+..|+.|++.+..++. ...|..+++|++|.++.| .+.+.++.....+++|++|++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44445555555444431 123445566666666666 444444444455566666666666654
No 76
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.39 E-value=0.0039 Score=69.86 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=32.3
Q ss_pred HhcccccceEeecCCCCcEEEEEeC-C----CCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ-S----EDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~----g~~vAVK~l~~ 772 (775)
++++|...++||+|+||.||+|... + |..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 5678999999999999999999985 4 68999999753
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00016 Score=68.83 Aligned_cols=84 Identities=26% Similarity=0.286 Sum_probs=38.4
Q ss_pred CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEE
Q 043943 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLI 498 (775)
Q Consensus 420 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ 498 (775)
.+.+.|++-+|.++++ .....++.|+.|.|+-|+|+.. ..+..|++|++|+|..|.|..... ..+.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455555555555432 1223455555555555555433 224455555555555554432211 1234444555555
Q ss_pred cCCCcCccc
Q 043943 499 LNKNQLFGS 507 (775)
Q Consensus 499 L~~n~~~~~ 507 (775)
|..|+-.|.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 554444433
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.00029 Score=78.40 Aligned_cols=235 Identities=20% Similarity=0.059 Sum_probs=119.5
Q ss_pred CCCCCCEEeCcCCCCCCC--CchhccCCCCCCEEECCCc-cccccCc----ccccCCCCCCEEEcccCc-CcccCCcccC
Q 043943 105 QLFKLQYLDLSANKLSGK--IPPEIGQLSFLSELSLYSN-CLNGSIP----QSLGNLSKQSLLSLYNNS-LSGYIPPVIG 176 (775)
Q Consensus 105 ~l~~L~~L~ls~n~~~~~--~p~~~~~l~~L~~L~L~~n-~~~~~~~----~~~~~l~~L~~L~l~~n~-~~~~~~~~l~ 176 (775)
.++.|+.|.+..+.-... .-.....+++|+.|+++++ ......+ .....+++|+.|+++++. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467777777777643322 2234566778888888763 1111111 233456778888888777 5544434443
Q ss_pred -CCCCCCEEeccCCc-CcccCC-cccCCCCCccEEEcccccCc--cccCccCCCCCCCCEEEcccccccccCCccccCCC
Q 043943 177 -NLISLSTLDLSLNQ-LIGSVP-FFLGNLTNLVTLHLFNNSLS--GFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVR 251 (775)
Q Consensus 177 -~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 251 (775)
.|++|++|.+..+. ++...- .....++.|++|+++++... ..+.....++++|+.|.+.... .+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCc
Confidence 37888888877665 332221 12246777888888877643 1122234456666665543321 144
Q ss_pred CCcEEEcccccCC---CCCCccccCCCCCCEEEcccCcccccC-CccCCCCCCCCeeeccCccccCCCCccCCCCCCCCe
Q 043943 252 NLRSLFLYSNELS---GSIPKEIGNLRSLSNLDLSINRLNGVI-PSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFD 327 (775)
Q Consensus 252 ~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 327 (775)
.++.+.+...... ......+..+++++.+.+..+...... ...+..++.|+ ..+... ......++.
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~---------~~~~~~l~~ 405 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR---------LCRSDSLRV 405 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH---------hccCCccce
Confidence 4555554443221 122223456777777777776633222 13344455552 111111 111122667
Q ss_pred eeCcCCcCcCc-cCCcCCC-CCcCcEEEccCCcC
Q 043943 328 LELSMNNLTGV-IPSSIGN-LRNLRLLYLYRNEL 359 (775)
Q Consensus 328 L~l~~n~l~~~-~~~~~~~-~~~L~~L~l~~n~l 359 (775)
|+++.+..... .-..... +..++.+++.++..
T Consensus 406 L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred EecccCccccccchHHHhhhhhccccCCccCccc
Confidence 77766654321 1111111 45566666666543
No 79
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.00052 Score=65.46 Aligned_cols=86 Identities=20% Similarity=0.219 Sum_probs=55.8
Q ss_pred CCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEE
Q 043943 346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFL 425 (775)
Q Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 425 (775)
+.+.+.|++++|.++++ .....++.|+.|.|+-|.++..- .+..|++|+.|+|..|.+...-......++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556677777766532 23346677777777777776433 366777888888887777655555555677777777
Q ss_pred eCCCccceee
Q 043943 426 DLSHNNFHGQ 435 (775)
Q Consensus 426 ~l~~n~l~~~ 435 (775)
.|..|.=.+.
T Consensus 94 WL~ENPCc~~ 103 (388)
T KOG2123|consen 94 WLDENPCCGE 103 (388)
T ss_pred hhccCCcccc
Confidence 7776654443
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.81 E-value=0.00083 Score=74.74 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=17.3
Q ss_pred CCcccceeccccc-cccccchhhhccCCCCcEEeCCCcc
Q 043943 394 LTNLVRVRMNQNN-LSGNISEAFVGTYPTLSFLDLSHNN 431 (775)
Q Consensus 394 l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~ 431 (775)
+.+|+.++++.+. ++......+...|++|+.|.+..|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 3445555555444 3333333333335555555544443
No 81
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=95.76 E-value=0.0062 Score=63.50 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=24.9
Q ss_pred eEeecCCCCcEEEEEeCCCCE-EEEEEccCC
Q 043943 744 YCIGKGAQGSLYKAKLQSEDL-IAVKKFNSQ 773 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~g~~-vAVK~l~~~ 773 (775)
..||+|+||+||||.+ .|+. ||||++...
T Consensus 47 ~~iG~G~~g~V~~~~~-~g~~~vavK~~~~~ 76 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKW-RGTDVVAVKIISDP 76 (362)
T ss_pred hhcccCCceeEEEEEe-CCceeEEEEEecch
Confidence 3499999999999999 6666 999999753
No 82
>PTZ00284 protein kinase; Provisional
Probab=95.66 E-value=0.0063 Score=67.19 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=35.4
Q ss_pred HHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 730 YDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 730 ~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.+++..++++|...++||+|+||+||+|... .|+.||||+++
T Consensus 121 ~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~ 163 (467)
T PTZ00284 121 GEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVR 163 (467)
T ss_pred CCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEe
Confidence 3555567788999999999999999999874 67899999985
No 83
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=95.30 E-value=0.0035 Score=53.86 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.7
Q ss_pred cccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL 774 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~ 774 (775)
|+ ..-||.|+.|.||+|+|.+|+.||||..+++.
T Consensus 14 fd-~~PlasASiaQVh~a~l~~g~~VaVKV~rP~i 47 (119)
T PF03109_consen 14 FD-PEPLASASIAQVHRARLKDGEEVAVKVQRPGI 47 (119)
T ss_pred CC-cchhhheehhhheeeeecccchhhhhhcchHH
Confidence 54 35699999999999999999999999988754
No 84
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=95.28 E-value=0.0085 Score=59.06 Aligned_cols=34 Identities=26% Similarity=0.602 Sum_probs=28.3
Q ss_pred cccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ 773 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~ 773 (775)
|..-|+|++|.||.||||+=. +++.||.||++-+
T Consensus 78 fe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kme 112 (419)
T KOG0663|consen 78 FEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKME 112 (419)
T ss_pred HHHHhhcccCcceeEEEeccCCcceeEEeeecccc
Confidence 445588999999999999863 6789999999754
No 85
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=95.16 E-value=0.017 Score=62.51 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=30.3
Q ss_pred ccccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL 774 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~ 774 (775)
.|++ +.||.|++|.||||++.+|+.||||..+++.
T Consensus 119 ~fd~-~plasaSigQVh~A~l~~G~~VaVKv~rp~i 153 (437)
T TIGR01982 119 EFEE-KPLAAASIAQVHRARLVDGKEVAVKVLRPGI 153 (437)
T ss_pred hCCC-cceeeeehhheEEEEecCCCEEEEEeeCCCc
Confidence 3543 6799999999999999999999999987753
No 86
>PTZ00036 glycogen synthase kinase; Provisional
Probab=94.95 E-value=0.021 Score=62.27 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=30.6
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+++|...++||+|+||.||+|... .|+.||||++..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~ 101 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQ 101 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEec
Confidence 456777889999999999999874 689999998854
No 87
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.84 E-value=0.012 Score=61.31 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=26.1
Q ss_pred ceEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943 743 EYCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ 773 (775)
Q Consensus 743 ~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~ 773 (775)
-.+||+|-||.||||.= .+|..||.||+.-+
T Consensus 122 i~kIGeGTyg~VYkAr~~~tgkivALKKvr~d 153 (560)
T KOG0600|consen 122 IEKIGEGTYGQVYKARDLETGKIVALKKVRFD 153 (560)
T ss_pred HHHhcCcchhheeEeeecccCcEEEEEEeecc
Confidence 35599999999999974 58999999998643
No 88
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=94.81 E-value=0.017 Score=63.94 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=31.0
Q ss_pred HhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
..+.|.-.++||+|+||+||+|.. .+|+.||||++..
T Consensus 30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~ 67 (496)
T PTZ00283 30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDM 67 (496)
T ss_pred cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEec
Confidence 345677778899999999999985 5799999999853
No 89
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=0.013 Score=65.19 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=25.0
Q ss_pred eEeecCCCCcEEEEEeCC------CCEEEEEEccCC
Q 043943 744 YCIGKGAQGSLYKAKLQS------EDLIAVKKFNSQ 773 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~~ 773 (775)
..||+|.||+||+|+.++ .+.||||.|+..
T Consensus 492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~ 527 (774)
T KOG1026|consen 492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDK 527 (774)
T ss_pred hhhcCchhhhhhhhhccCCCCCccceehhHhhhccc
Confidence 449999999999999853 357999999864
No 90
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=94.78 E-value=0.023 Score=60.74 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.5
Q ss_pred cccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~ 772 (775)
|.-.+.||+||||.||+|.. ..+..||||+++.
T Consensus 37 ~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~ 75 (375)
T cd05104 37 LSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKP 75 (375)
T ss_pred eehhheecCCccceEEEEEEeccccCccceeEEEEeccC
Confidence 45557799999999999974 2456899999864
No 91
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.59 E-value=0.013 Score=32.97 Aligned_cols=18 Identities=56% Similarity=0.652 Sum_probs=8.4
Q ss_pred ccEEECcCCcCcccCCccc
Q 043943 567 LSELDLSQNFLEGEIPSQI 585 (775)
Q Consensus 567 L~~L~Ls~n~l~~~~p~~l 585 (775)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 444433
No 92
>smart00090 RIO RIO-like kinase.
Probab=94.54 E-value=0.029 Score=55.14 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=27.8
Q ss_pred cccceEeecCCCCcEEEEE--eCCCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAK--LQSEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~--l~~g~~vAVK~l~~ 772 (775)
|.-...||+|+||.||+|. ..+|+.||||+...
T Consensus 30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~ 64 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRT 64 (237)
T ss_pred HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEc
Confidence 3344669999999999998 67999999998864
No 93
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=94.42 E-value=0.011 Score=68.12 Aligned_cols=34 Identities=38% Similarity=0.528 Sum_probs=28.5
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
++|-+-.++|+||||.|||.+=. ||+..||||+.
T Consensus 479 ~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIp 513 (1351)
T KOG1035|consen 479 NDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIP 513 (1351)
T ss_pred hhhHHHHHhcCCCCceEEEEeecccchhhhhhhcc
Confidence 44666678999999999998753 99999999984
No 94
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.33 E-value=0.018 Score=32.37 Aligned_cols=18 Identities=50% Similarity=0.615 Sum_probs=8.7
Q ss_pred CCEEECCCccccccCcccc
Q 043943 133 LSELSLYSNCLNGSIPQSL 151 (775)
Q Consensus 133 L~~L~L~~n~~~~~~~~~~ 151 (775)
|++|++++|+++ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 344433
No 95
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=94.08 E-value=0.036 Score=59.14 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=23.9
Q ss_pred eEeecCCCCcEEEEEeC--CC--CE-EEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKLQ--SE--DL-IAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~--~g--~~-vAVK~l~~ 772 (775)
++||+|+||.||+|++. ++ .. ||||+.+.
T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~ 196 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKG 196 (474)
T ss_pred ceeecccccEEEEEEEEecCCceeeeeEEEeecc
Confidence 67999999999999995 33 23 89999875
No 96
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.04 E-value=0.039 Score=58.81 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=36.3
Q ss_pred cHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 729 ~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.++++..+.++|.....||+|+||.||++... +|+.||||.+.
T Consensus 34 ~~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~ 77 (371)
T cd05622 34 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLS 77 (371)
T ss_pred HHhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEE
Confidence 35566667788999999999999999999985 67899999874
No 97
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=93.93 E-value=0.031 Score=59.52 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=30.9
Q ss_pred HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
..++|...++||+|+||.||+++-. +|+.||||++.
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~ 77 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLS 77 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE
Confidence 4567888889999999999999875 68899999984
No 98
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=93.86 E-value=0.048 Score=58.17 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=27.0
Q ss_pred ccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~ 772 (775)
+|.-.++||+|+||.||+|.. .++..||||++..
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~ 78 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKA 78 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccceeEEEeccC
Confidence 456667899999999999874 2346899999864
No 99
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=93.66 E-value=0.049 Score=57.98 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=32.0
Q ss_pred HHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 733 IIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 733 l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
+...+++|...++||+|+||.||++... +|+.||+|.+.
T Consensus 38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~ 77 (370)
T cd05621 38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLS 77 (370)
T ss_pred cCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEE
Confidence 3344567777889999999999999985 57899999874
No 100
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=93.47 E-value=0.063 Score=59.01 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=30.7
Q ss_pred cccccceEeecCCCCcEEEEEeCC-CCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQS-EDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~~ 773 (775)
..|++ .-||+|++|.||+|++.+ |+.||||.+.++
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 34666 679999999999999988 999999999865
No 101
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=93.42 E-value=0.076 Score=57.06 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.3
Q ss_pred ccccceEeecCCCCcEEEEEeC------CCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~ 772 (775)
.|.-.++||+|+||.||+|+.. .+..||||++..
T Consensus 38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~ 77 (400)
T cd05105 38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKP 77 (400)
T ss_pred ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCC
Confidence 4455577999999999999862 234699999964
No 102
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=93.38 E-value=0.06 Score=57.82 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=26.6
Q ss_pred cccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ 773 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~ 773 (775)
+.-..+||+|+||.||+|.+. .+..||||+++..
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~ 78 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKST 78 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCC
Confidence 444467999999999999974 2358999999753
No 103
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=93.27 E-value=0.061 Score=56.91 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=25.4
Q ss_pred eEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++||+|+||.||+|+.. +|+.||||++..
T Consensus 80 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 109 (353)
T PLN00034 80 NRIGSGAGGTVYKVIHRPTGRLYALKVIYG 109 (353)
T ss_pred hhccCCCCeEEEEEEECCCCCEEEEEEEec
Confidence 56999999999999874 789999999853
No 104
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=93.09 E-value=0.052 Score=56.91 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=27.2
Q ss_pred cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
|.+ .++|+|-||+||-|+-. .|+.||||.+..
T Consensus 567 f~d-evLGSGQFG~VYgg~hRktGrdVAvKvIdK 599 (888)
T KOG4236|consen 567 FAD-EVLGSGQFGTVYGGKHRKTGRDVAVKVIDK 599 (888)
T ss_pred hhH-hhccCCcceeeecceecccCceeeeeeeec
Confidence 544 58999999999999984 799999999853
No 105
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=92.86 E-value=0.029 Score=53.57 Aligned_cols=30 Identities=40% Similarity=0.467 Sum_probs=25.7
Q ss_pred eEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943 744 YCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ 773 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~ 773 (775)
..||.|.||+|+|=.. +.|+.+||||+...
T Consensus 70 g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~ 100 (361)
T KOG1006|consen 70 GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSN 100 (361)
T ss_pred HHhcCCcchhhhhhhcCccCcEEEEEEeeec
Confidence 4499999999999877 47999999999753
No 106
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=92.76 E-value=0.094 Score=55.38 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=31.8
Q ss_pred HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
..++|.--.+||+||||.||-+.=. .|...|+|+|+.
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkK 176 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKK 176 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccH
Confidence 4577888899999999999999875 689999999963
No 107
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=92.64 E-value=0.083 Score=61.26 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=31.0
Q ss_pred hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
-..|.-+..||+||||+||+|+=.+|+.||+|.=++
T Consensus 697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P 732 (974)
T KOG1166|consen 697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKP 732 (974)
T ss_pred ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecC
Confidence 345777788999999999999999999999998544
No 108
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.45 E-value=0.13 Score=55.96 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=31.3
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~ 773 (775)
++|.--.++|+|.||+||.+.+. +++..|||.|+.+
T Consensus 368 ~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~ 404 (694)
T KOG0694|consen 368 DDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKG 404 (694)
T ss_pred cceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeecc
Confidence 45777899999999999999995 6789999999754
No 109
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=92.43 E-value=0.035 Score=61.64 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=28.7
Q ss_pred cccccceEeecCCCC-cEEEEEeCCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQG-SLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G-~VYkg~l~~g~~vAVK~l~~ 772 (775)
.-|+.+.++|.|.-| .||+|.. +|+.|||||+-.
T Consensus 509 ~~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~ 543 (903)
T KOG1027|consen 509 LFFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLE 543 (903)
T ss_pred eeeccHHHcccCCCCcEEEEEee-CCceehHHHHhh
Confidence 346777889999988 4799999 999999999854
No 110
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=92.27 E-value=0.12 Score=54.41 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.0
Q ss_pred ccccceEeecCCCCcEEEEEeCC--CCEEEEEEcc
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQS--EDLIAVKKFN 771 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~~--g~~vAVK~l~ 771 (775)
+|.-...||+|+||.||+|...+ +..||||++.
T Consensus 31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~ 65 (340)
T PTZ00426 31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFE 65 (340)
T ss_pred hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEE
Confidence 46667889999999999998643 3689999874
No 111
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=91.93 E-value=0.16 Score=54.08 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=30.0
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.+.|...+.||+|+||.||++.-. .|+.||||++..
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 59 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCc
Confidence 355777788999999999999864 688999999864
No 112
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.90 E-value=0.00098 Score=71.96 Aligned_cols=38 Identities=29% Similarity=0.269 Sum_probs=21.3
Q ss_pred CCCCEEEcccCcccccCC----ccCCCCCCCCeeeccCcccc
Q 043943 275 RSLSNLDLSINRLNGVIP----SSIGNSNNLSILYLYSNQLS 312 (775)
Q Consensus 275 ~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~ 312 (775)
..+++++++.|.++.... ..+..++.++++.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 455666666666554322 23344556667777766655
No 113
>PHA03211 serine/threonine kinase US3; Provisional
Probab=91.86 E-value=0.15 Score=55.70 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=27.6
Q ss_pred ccccceEeecCCCCcEEEEEeC-CCCEEEEEEc
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKF 770 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l 770 (775)
+|.-...||+|+||.||+|... .++.||||+.
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~ 202 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAG 202 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECCCCCEEEEecc
Confidence 4677788999999999999986 4789999964
No 114
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.85 E-value=0.084 Score=56.29 Aligned_cols=34 Identities=29% Similarity=0.558 Sum_probs=27.2
Q ss_pred cccceEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943 740 FDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ 773 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~ 773 (775)
|.+-+.||.|+||.||-+.= .+.++||||+++..
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsyS 62 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS 62 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeecccc
Confidence 44445699999999999875 36789999999753
No 115
>PHA03209 serine/threonine kinase US3; Provisional
Probab=91.51 E-value=0.22 Score=52.83 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=30.3
Q ss_pred HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
+..+|.....||+|+||.||+|... .++.||||...
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~ 100 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ 100 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC
Confidence 4567888899999999999999985 56789999754
No 116
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=91.50 E-value=0.17 Score=59.00 Aligned_cols=31 Identities=29% Similarity=0.479 Sum_probs=25.4
Q ss_pred ceEeecCCCCcEEEEEeC--CCC----EEEEEEccCC
Q 043943 743 EYCIGKGAQGSLYKAKLQ--SED----LIAVKKFNSQ 773 (775)
Q Consensus 743 ~~~iG~Gg~G~VYkg~l~--~g~----~vAVK~l~~~ 773 (775)
.+.||+|.||.||+|.+. +|. .||||.+...
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~ 733 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRL 733 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEecccc
Confidence 367999999999999995 343 4999999754
No 117
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=91.06 E-value=0.19 Score=38.68 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.4
Q ss_pred ccccHHHHHHHhcccccc
Q 043943 726 GKITYDQIIRATNDFDEE 743 (775)
Q Consensus 726 ~~~~~~~l~~aT~~f~~~ 743 (775)
..++|+|..+|...|+.+
T Consensus 55 DP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp -GGGSSSHHHHHHHCSSB
T ss_pred CcccccCHHHHHHHHHhh
Confidence 568999999999999876
No 118
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=90.91 E-value=0.13 Score=56.02 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=30.1
Q ss_pred ccHHHHHHHhcccccceEeecCCCCcEEEEEeC--CCC--EEEEEEccCCC
Q 043943 728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ--SED--LIAVKKFNSQL 774 (775)
Q Consensus 728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~--~g~--~vAVK~l~~~~ 774 (775)
+.-++|... ++||+|.||.|.||.|. .|. .||||.|..+.
T Consensus 107 Ipee~i~l~-------e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~ 150 (1039)
T KOG0199|consen 107 IPEEQIKLY-------ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDS 150 (1039)
T ss_pred ccHHHHHHH-------HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCc
Confidence 445555443 45999999999999994 554 58999998753
No 119
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=90.89 E-value=0.19 Score=51.79 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=28.2
Q ss_pred cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~ 772 (775)
++|...+.||+|+||.||+|.. .++..||||+++.
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~ 75 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKP 75 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCc
Confidence 4577788999999999999974 1345899998864
No 120
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=90.75 E-value=0.21 Score=51.94 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=27.8
Q ss_pred cccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
|...+.||+|+||.||+|+.. +|..||||++.
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~ 59 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMS 59 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEe
Confidence 566678999999999999974 68899999985
No 121
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.56 E-value=0.0042 Score=57.84 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=49.9
Q ss_pred ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943 78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157 (775)
Q Consensus 78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 157 (775)
.+..+...+.||++.|.+.. .-..|+.++.|..|+++.|.+. .+|..+..+..++++++..|..+ ..|.++...+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 44455566666666665542 2233455555666666666555 45666666666666666665554 555566666666
Q ss_pred CEEEcccCcCc
Q 043943 158 SLLSLYNNSLS 168 (775)
Q Consensus 158 ~~L~l~~n~~~ 168 (775)
+++++..+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 65555555443
No 122
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.24 E-value=0.0019 Score=69.70 Aligned_cols=37 Identities=38% Similarity=0.533 Sum_probs=19.0
Q ss_pred ccceeccccccccccchhh---hccCCCCcEEeCCCccce
Q 043943 397 LVRVRMNQNNLSGNISEAF---VGTYPTLSFLDLSHNNFH 433 (775)
Q Consensus 397 L~~L~l~~n~~~~~~~~~~---~~~~~~L~~L~l~~n~l~ 433 (775)
+..+.+.+|.+........ ....+.|+.|+++.|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5566666666554432222 133445555666655554
No 123
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=89.73 E-value=0.21 Score=50.42 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=29.5
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|.--++||+|+||+||...-. .|+..|+|.|+.
T Consensus 25 ~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K 60 (357)
T KOG0598|consen 25 DDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKK 60 (357)
T ss_pred hheeeeeeeeccCCceEEEEEEcccCceeehhhhhh
Confidence 45888899999999999998764 688999999863
No 124
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=89.66 E-value=0.25 Score=53.97 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=30.9
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL 774 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~ 774 (775)
..|++ .-|+.++-|.||+|+|++|+.||||...++.
T Consensus 126 ~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi 161 (517)
T COG0661 126 SEFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPGI 161 (517)
T ss_pred HHcCC-CchhhhhHhhheeEEecCCCEEEEEecCCCh
Confidence 44653 4689999999999999999999999998875
No 125
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=89.62 E-value=0.045 Score=53.02 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=26.6
Q ss_pred cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
|+--.++|+|+||.|||+.-. .|++||||+.-.
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV 68 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV 68 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc
Confidence 333355999999999999875 699999999754
No 126
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=0.042 Score=50.45 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=41.6
Q ss_pred CCCEEECCCCcccccCCccccCcCCCCEEEccCCcCcc-CCchhHHhhhccccEEECcCC-cCcccCCccccCCCCCcEE
Q 043943 517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSH-KIPTQFEKLQLQLSELDLSQN-FLEGEIPSQICNMESLVKL 594 (775)
Q Consensus 517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 594 (775)
.++.+|-++..|....-+.+..+++++.|.+.++.--+ --.+.+.+..++|+.|+|++| +||..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45566666666665544555666666666666653221 111222233346666666655 4444334444555555555
Q ss_pred eCC
Q 043943 595 NLS 597 (775)
Q Consensus 595 ~ls 597 (775)
.|.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 543
No 127
>PHA03212 serine/threonine kinase US3; Provisional
Probab=89.42 E-value=0.33 Score=52.07 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=29.0
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
++|.-..+||+|+||.||++.-. .|+.||||+..
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~ 126 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ 126 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh
Confidence 45777789999999999999864 68899999864
No 128
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=88.70 E-value=0.23 Score=52.55 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.8
Q ss_pred eEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 744 YCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
+.||+|-||.||.|.+.+-..||||.++.+
T Consensus 212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~ 241 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEG 241 (468)
T ss_pred HHhcCCccceEEEEEEcCCCcccceEEecc
Confidence 459999999999999955559999999764
No 129
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=88.55 E-value=0.21 Score=53.66 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.6
Q ss_pred ceEeecCCCCcEEEEEeCC-CCEEEEEEccCCC
Q 043943 743 EYCIGKGAQGSLYKAKLQS-EDLIAVKKFNSQL 774 (775)
Q Consensus 743 ~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~~~ 774 (775)
++++|.|-||.||-|+|.. ...||||.|+.++
T Consensus 272 khKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt 304 (1157)
T KOG4278|consen 272 KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT 304 (1157)
T ss_pred eeccCCCcccceeeeeeeccceeeehhhhhhcc
Confidence 5779999999999999963 5689999998764
No 130
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=87.93 E-value=0.65 Score=47.01 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=32.2
Q ss_pred cccHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.++..||++- ++||+|..|+|||.... .|+..|.|.+..
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~ 114 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILL 114 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecc
Confidence 3677787665 66999999999999984 788999999854
No 131
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.84 E-value=0.31 Score=25.31 Aligned_cols=9 Identities=67% Similarity=0.815 Sum_probs=3.0
Q ss_pred CCEEeCcCC
Q 043943 109 LQYLDLSAN 117 (775)
Q Consensus 109 L~~L~ls~n 117 (775)
|++|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 333333333
No 132
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=87.55 E-value=0.24 Score=52.75 Aligned_cols=38 Identities=32% Similarity=0.627 Sum_probs=31.4
Q ss_pred cccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
.+.|++|.+- .-+|.|+-|.||+|.| .++.||||+.+.
T Consensus 120 eiPFe~IsEL-------eWlGSGaQGAVF~Grl-~netVAVKKV~e 157 (904)
T KOG4721|consen 120 EIPFEEISEL-------EWLGSGAQGAVFLGRL-HNETVAVKKVRE 157 (904)
T ss_pred cCCHHHhhhh-------hhhccCcccceeeeec-cCceehhHHHhh
Confidence 4678887543 5599999999999999 779999999864
No 133
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=86.31 E-value=0.36 Score=54.19 Aligned_cols=40 Identities=20% Similarity=0.202 Sum_probs=27.4
Q ss_pred cHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEE
Q 043943 729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKK 769 (775)
Q Consensus 729 ~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~ 769 (775)
++......+..|...++||+|+||+||+|.+.+. .+++|+
T Consensus 324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~ 363 (535)
T PRK09605 324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGR-DAVIKE 363 (535)
T ss_pred eeccccccccccCccceeccCCcEEEEEEeecCc-cceeEE
Confidence 3444344455556778999999999999998554 444443
No 134
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=86.08 E-value=0.6 Score=50.12 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=27.5
Q ss_pred eEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943 744 YCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL 774 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~ 774 (775)
.+||+|-||.|---++.++..||||.|+++.
T Consensus 544 ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a 574 (807)
T KOG1094|consen 544 EKIGEGQFGEVHLCEVEGPLKVAVKILRPDA 574 (807)
T ss_pred hhhcCcccceeEEEEecCceEEEEeecCccc
Confidence 4599999999999999777999999998753
No 135
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=85.99 E-value=0.49 Score=43.82 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=24.6
Q ss_pred eEeecCCCCcEEEEEe-CCCCEEEEEEccCCC
Q 043943 744 YCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQL 774 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~~ 774 (775)
..||+|+||.|-|=.. .+|+..||||+...+
T Consensus 52 ~elGrGayG~vekmrh~~sg~imAvKri~~tv 83 (282)
T KOG0984|consen 52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRATV 83 (282)
T ss_pred hhhcCCccchhhheeeccCCeEEEEeeehhhc
Confidence 4599999998765554 489999999987543
No 136
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=85.99 E-value=0.52 Score=30.72 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=4.1
Q ss_pred eeehhhHHHH
Q 043943 673 LIIMILLPLL 682 (775)
Q Consensus 673 ~~i~i~~~~~ 682 (775)
+..+++++++
T Consensus 13 Ia~~VvVPV~ 22 (40)
T PF08693_consen 13 IAVGVVVPVG 22 (40)
T ss_pred EEEEEEechH
Confidence 3344444433
No 137
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=85.95 E-value=0.5 Score=51.11 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=24.4
Q ss_pred ceEeecCCCCcEEEEEeCC---C--CEEEEEEccCC
Q 043943 743 EYCIGKGAQGSLYKAKLQS---E--DLIAVKKFNSQ 773 (775)
Q Consensus 743 ~~~iG~Gg~G~VYkg~l~~---g--~~vAVK~l~~~ 773 (775)
..+||+|-||.||+|+..+ | ..||||.-+.+
T Consensus 394 ~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d 429 (974)
T KOG4257|consen 394 KRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTD 429 (974)
T ss_pred HHhhcCCcccceeeeEecccccCcceeeeeehhccC
Confidence 4669999999999999853 3 36899987653
No 138
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=85.90 E-value=0.81 Score=49.85 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=26.5
Q ss_pred ceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943 743 EYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ 773 (775)
Q Consensus 743 ~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~ 773 (775)
..+||+|.||.|-|+.=. .|+.||||.++..
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~ 222 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK 222 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEeeccC
Confidence 467999999999999864 5899999999754
No 139
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=85.14 E-value=0.46 Score=41.47 Aligned_cols=33 Identities=27% Similarity=0.504 Sum_probs=19.8
Q ss_pred cceeeehhhHHHHHHHHHHHHHHhhheeccccc
Q 043943 670 VKKLIIMILLPLLGVLALSIISIGLLFNSRRTK 702 (775)
Q Consensus 670 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~r~~~ 702 (775)
.+.+++++++++.++++++++++++++++|+++
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 345667777776666666655555555555544
No 140
>PHA03207 serine/threonine kinase US3; Provisional
Probab=84.93 E-value=0.85 Score=49.00 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=27.5
Q ss_pred ccccceEeecCCCCcEEEEEeC---CCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ---SEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~---~g~~vAVK~l~~ 772 (775)
.|.....||+|+||.||++... .+..||||++..
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~ 129 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG 129 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence 4666678999999999999763 357899999864
No 141
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=84.55 E-value=0.76 Score=48.60 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.6
Q ss_pred eEeecCCCCcEEEEEeCC-CCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKLQS-EDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~ 772 (775)
.+||+|.||.||+++-.. |+.+|+|.+..
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k 70 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACKVIPK 70 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEEEeeh
Confidence 569999999999999875 99999999853
No 142
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.26 E-value=0.84 Score=26.73 Aligned_cols=18 Identities=50% Similarity=0.643 Sum_probs=9.2
Q ss_pred CCCcEEeCCCCcCcccCC
Q 043943 589 ESLVKLNLSYNQLSGFIP 606 (775)
Q Consensus 589 ~~L~~L~ls~n~l~~~~p 606 (775)
++|+.|+|++|++....+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555554433
No 143
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.26 E-value=0.84 Score=26.73 Aligned_cols=18 Identities=50% Similarity=0.643 Sum_probs=9.2
Q ss_pred CCCcEEeCCCCcCcccCC
Q 043943 589 ESLVKLNLSYNQLSGFIP 606 (775)
Q Consensus 589 ~~L~~L~ls~n~l~~~~p 606 (775)
++|+.|+|++|++....+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555554433
No 144
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=84.19 E-value=0.87 Score=51.34 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=27.6
Q ss_pred cccceEeecCCCCcEEEEEeCCC-CEEEEEEcc
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQSE-DLIAVKKFN 771 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~~g-~~vAVK~l~ 771 (775)
..-+++|-+|||+.||-+....| ..+|+||+-
T Consensus 39 v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~ 71 (738)
T KOG1989|consen 39 VTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMY 71 (738)
T ss_pred EEEEEEEccCCcEEEEEEEecCCCceeeeeeee
Confidence 34468899999999999999766 999999984
No 145
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.17 E-value=0.15 Score=47.04 Aligned_cols=80 Identities=19% Similarity=0.146 Sum_probs=38.7
Q ss_pred CcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccC-Cccc-cCCCCCcEEEccCCC-ccCcCChhhhcCCCCCEEE
Q 043943 422 LSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSI-PPEI-GNSSKLQVLNLSSNH-IGGKIPMELGRLSSLNKLI 498 (775)
Q Consensus 422 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~-~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ 498 (775)
++.++-+++.+..+--..+..+++++.|.+.+|.--+.. -..+ .-.++|+.|++++|. |+...-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455566666555544445555566666666555322110 0000 123456666666553 4443344455555555555
Q ss_pred cCC
Q 043943 499 LNK 501 (775)
Q Consensus 499 L~~ 501 (775)
|.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 146
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.12 E-value=0.39 Score=27.57 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=4.9
Q ss_pred CCCEEEccCCcCc
Q 043943 541 KVHYLNLSNNEFS 553 (775)
Q Consensus 541 ~L~~L~Ls~n~l~ 553 (775)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 147
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.70 E-value=0.023 Score=53.15 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=47.4
Q ss_pred cccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCC
Q 043943 102 QISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181 (775)
Q Consensus 102 ~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 181 (775)
.+..+..-+.||++.|.+. .+-..|+-++.|..|+++.|.+. ..|..+..+..+..+++..|..+ ..|.++...+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4556666777777777655 23344666667777777777665 55666655555555555444333 234444444444
Q ss_pred CEEeccCC
Q 043943 182 STLDLSLN 189 (775)
Q Consensus 182 ~~L~l~~n 189 (775)
+++++-.+
T Consensus 114 k~~e~k~~ 121 (326)
T KOG0473|consen 114 KKNEQKKT 121 (326)
T ss_pred chhhhccC
Confidence 44444443
No 148
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=83.47 E-value=1.1 Score=43.33 Aligned_cols=36 Identities=6% Similarity=-0.023 Sum_probs=31.0
Q ss_pred hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
.+.|...+++|.||||.||...- ++..+|||.+.+.
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~ 65 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPK 65 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechh
Confidence 57788899999999999999766 6778999999754
No 149
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.74 E-value=1 Score=26.40 Aligned_cols=13 Identities=62% Similarity=0.764 Sum_probs=5.7
Q ss_pred CCCEEECCCCccc
Q 043943 517 ELELLDLSENRLS 529 (775)
Q Consensus 517 ~L~~L~ls~n~l~ 529 (775)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 150
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.74 E-value=1 Score=26.40 Aligned_cols=13 Identities=62% Similarity=0.764 Sum_probs=5.7
Q ss_pred CCCEEECCCCccc
Q 043943 517 ELELLDLSENRLS 529 (775)
Q Consensus 517 ~L~~L~ls~n~l~ 529 (775)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 151
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=82.72 E-value=0.84 Score=45.56 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=25.7
Q ss_pred ccccceEeecCCCCcEEEEE-eCCCCEEEEEE
Q 043943 739 DFDEEYCIGKGAQGSLYKAK-LQSEDLIAVKK 769 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~-l~~g~~vAVK~ 769 (775)
+|.-..+||+|.||..+-|+ |-++++||||-
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKf 60 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKF 60 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEe
Confidence 35556789999999999997 34899999995
No 152
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=81.27 E-value=0.56 Score=48.22 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=29.9
Q ss_pred hcccccceEeecCCCCcEEEEEeCC----CCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQS----EDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~----g~~vAVK~l~~ 772 (775)
-+.|...++||+|.|++||++.+-. .+.||+|.+..
T Consensus 35 ~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ 74 (418)
T KOG1167|consen 35 SNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYR 74 (418)
T ss_pred hhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccc
Confidence 3557788999999999999999843 56899999854
No 153
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=80.90 E-value=0.59 Score=47.57 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=28.5
Q ss_pred HHHHHHhcccccceEeecCCCCcEEEEEeCC------CCEEEEEEccC
Q 043943 731 DQIIRATNDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNS 772 (775)
Q Consensus 731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~ 772 (775)
+||.-.-..|.-+.++-+|-||.||+|.|.+ -+.|-||.++.
T Consensus 277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~ 324 (563)
T KOG1024|consen 277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQ 324 (563)
T ss_pred HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHh
Confidence 3443333457777889999999999998753 34566666554
No 154
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.22 E-value=0.64 Score=44.74 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=26.0
Q ss_pred ccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 741 DEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 741 ~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.+++-||-|+||.|+...=| ||+.||.|++-
T Consensus 56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~p 87 (449)
T KOG0664|consen 56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMP 87 (449)
T ss_pred CCCCcccccceeEEEeccCCCCccchhHhhcc
Confidence 34567999999999988765 89999999873
No 155
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.52 E-value=1.7 Score=44.72 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=25.0
Q ss_pred eEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+.+|+|+||.|-.|.= .+|+.||||.++.
T Consensus 178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~k 207 (475)
T KOG0615|consen 178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINK 207 (475)
T ss_pred eeecCCceeEEEEEEEcccCcEEEeeeeeh
Confidence 5699999999998875 4799999999864
No 156
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=79.21 E-value=0.35 Score=49.80 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.0
Q ss_pred eEeecCCCCcEEEEE-eCCCCEEEEEEc
Q 043943 744 YCIGKGAQGSLYKAK-LQSEDLIAVKKF 770 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~-l~~g~~vAVK~l 770 (775)
+++|+|||..|||+. +...+.||||.-
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIH 496 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIH 496 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeee
Confidence 679999999999996 456788999974
No 157
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=77.82 E-value=0.55 Score=48.78 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=28.0
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
+.|..-++||+||||.||--... .|...|-|+|.
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~ 219 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLD 219 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHH
Confidence 56888899999999999987774 57778877763
No 158
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=77.59 E-value=1.2 Score=47.66 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=27.9
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
++|.-..+||+|+|.+||+++= ..++..|||++.
T Consensus 73 ~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~ 107 (604)
T KOG0592|consen 73 NDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLD 107 (604)
T ss_pred hhcchhheeccccceeEEEeeecCCCceeeHhhhh
Confidence 4455566799999999999985 468899999985
No 159
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.35 E-value=1.1 Score=45.96 Aligned_cols=44 Identities=30% Similarity=0.478 Sum_probs=32.7
Q ss_pred HHHHHHHhcccccceEeecCCCCcEEEEEeCC-CCEEEEEEccCCC
Q 043943 730 YDQIIRATNDFDEEYCIGKGAQGSLYKAKLQS-EDLIAVKKFNSQL 774 (775)
Q Consensus 730 ~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~~~ 774 (775)
-.+..+|| +|+--.+||+|+||+|.-|+=.+ .+..|||.|+.++
T Consensus 342 ~~d~i~~t-DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDV 386 (683)
T KOG0696|consen 342 KRDRIKAT-DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDV 386 (683)
T ss_pred cccceeec-ccceEEEeccCccceeeeecccCcchhhhhhhhccce
Confidence 34445555 47778899999999999988742 3568999997653
No 160
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=77.35 E-value=2.1 Score=48.85 Aligned_cols=30 Identities=33% Similarity=0.395 Sum_probs=24.5
Q ss_pred eEeecCCCCcEEEEEeC----C----CCEEEEEEccCC
Q 043943 744 YCIGKGAQGSLYKAKLQ----S----EDLIAVKKFNSQ 773 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~----~----g~~vAVK~l~~~ 773 (775)
+.+|+|.||.|++|.+. . ...||||+++..
T Consensus 302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~ 339 (609)
T KOG0200|consen 302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKEN 339 (609)
T ss_pred ceeecccccceEeEEEeecccccccceEEEEEEecccc
Confidence 37999999999999973 1 357999999754
No 161
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=76.95 E-value=2.8 Score=26.86 Aligned_cols=9 Identities=0% Similarity=-0.167 Sum_probs=3.5
Q ss_pred hhheecccc
Q 043943 693 GLLFNSRRT 701 (775)
Q Consensus 693 ~~~~~~r~~ 701 (775)
.+.+++||.
T Consensus 25 ~YaCcykk~ 33 (38)
T PF02439_consen 25 YYACCYKKH 33 (38)
T ss_pred HHHHHHccc
Confidence 333444433
No 162
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.75 E-value=2.5 Score=44.10 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=24.9
Q ss_pred eEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 744 YCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
.+||.|.-++||+|.- |-++.||||+++
T Consensus 32 e~IG~G~sa~V~~A~c~p~~e~VAIK~in 60 (516)
T KOG0582|consen 32 EVIGVGASAVVYLARCIPTNEVVAIKIIN 60 (516)
T ss_pred EEEeccceeEeeeeeecccCCEEEEEEee
Confidence 5699999999999974 778999999985
No 163
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=76.10 E-value=1.8 Score=36.82 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=11.9
Q ss_pred eehhhHHHHHHHHHHHHHHhhheecccc
Q 043943 674 IIMILLPLLGVLALSIISIGLLFNSRRT 701 (775)
Q Consensus 674 ~i~i~~~~~~~~~~~~~~~~~~~~~r~~ 701 (775)
+.+|++++++.+++++++++|+.+|++|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444443
No 164
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=75.43 E-value=0.99 Score=44.60 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=24.5
Q ss_pred cceEeecCCCCcEEEEEeCC---CC--EEEEEEccCC
Q 043943 742 EEYCIGKGAQGSLYKAKLQS---ED--LIAVKKFNSQ 773 (775)
Q Consensus 742 ~~~~iG~Gg~G~VYkg~l~~---g~--~vAVK~l~~~ 773 (775)
-...||+|-||.|||++=.+ .+ ..|+|+++..
T Consensus 28 ~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~ 64 (438)
T KOG0666|consen 28 GIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE 64 (438)
T ss_pred ccceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence 34569999999999997643 23 6899998764
No 165
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=75.36 E-value=2.2 Score=46.77 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=30.3
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQL 774 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~~ 774 (775)
..|++ .-||.-+.|.||||++++|+.||||+-+++.
T Consensus 162 ~~f~~-~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l 197 (538)
T KOG1235|consen 162 SEFDE-EPIAAASLAQVHRARLKNGEDVAVKVQHPGL 197 (538)
T ss_pred HhcCc-chhhhcchhheEEEEecCCCEEEEEecCcCh
Confidence 34553 4589999999999999999999999988764
No 166
>PF15102 TMEM154: TMEM154 protein family
Probab=74.36 E-value=3.7 Score=35.78 Aligned_cols=8 Identities=13% Similarity=0.410 Sum_probs=4.1
Q ss_pred ccHHHHHH
Q 043943 728 ITYDQIIR 735 (775)
Q Consensus 728 ~~~~~l~~ 735 (775)
+..+||.+
T Consensus 125 iEmeeldk 132 (146)
T PF15102_consen 125 IEMEELDK 132 (146)
T ss_pred hhHHHHHh
Confidence 44556654
No 167
>PHA03210 serine/threonine kinase US3; Provisional
Probab=71.06 E-value=2 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.2
Q ss_pred hcccccceEeecCCCCcEEEEEeC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ 760 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~ 760 (775)
.++|.-...||+|+||+||++.+.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEe
Confidence 456777789999999999998764
No 168
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=71.00 E-value=3.4 Score=33.66 Aligned_cols=10 Identities=20% Similarity=0.205 Sum_probs=4.0
Q ss_pred eeehhhHHHH
Q 043943 673 LIIMILLPLL 682 (775)
Q Consensus 673 ~~i~i~~~~~ 682 (775)
.+.+++++++
T Consensus 67 aiagi~vg~~ 76 (96)
T PTZ00382 67 AIAGISVAVV 76 (96)
T ss_pred cEEEEEeehh
Confidence 3444444333
No 169
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=70.93 E-value=4 Score=45.11 Aligned_cols=32 Identities=9% Similarity=0.147 Sum_probs=25.4
Q ss_pred cccceEeecCCCCcEEEEEeC-C-CCEEEEEEcc
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-S-EDLIAVKKFN 771 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~-g~~vAVK~l~ 771 (775)
|.-.++||+|+||.||+|.-. + ++.||+|++.
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~ 102 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVM 102 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcc
Confidence 555678999999999999754 3 6788998763
No 170
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=70.75 E-value=3.7 Score=43.31 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.6
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
|.|.-...||+|.||.|-.|.= .+|+.||||.+..
T Consensus 97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K 132 (576)
T KOG0585|consen 97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPK 132 (576)
T ss_pred hheehhhhhcCCccceEEEEeecCCCcEEEEEeech
Confidence 4455556699999999988864 3899999999853
No 171
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.17 E-value=4.1 Score=45.04 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=25.2
Q ss_pred ccceEeecCCCCcEEEEEeCCC-CEEEEEEcc
Q 043943 741 DEEYCIGKGAQGSLYKAKLQSE-DLIAVKKFN 771 (775)
Q Consensus 741 ~~~~~iG~Gg~G~VYkg~l~~g-~~vAVK~l~ 771 (775)
.+.-++|+|-||+||.|.=.+. ..+|||-+.
T Consensus 578 ~ervVLGKGTYG~VYA~RD~~tqvrIaIKEIp 609 (1226)
T KOG4279|consen 578 NERVVLGKGTYGTVYAARDMDTQVRIAIKEIP 609 (1226)
T ss_pred CceEEeecCceeEEEeeccccceeEEEeeecc
Confidence 4567899999999999986544 468999874
No 172
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.18 E-value=4.2 Score=43.81 Aligned_cols=28 Identities=32% Similarity=0.636 Sum_probs=24.4
Q ss_pred eEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 744 YCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
.+||+|+.|.||-+.= ..++.||||++.
T Consensus 279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~ 307 (550)
T KOG0578|consen 279 KKIGQGATGGVYVARKISTKQEVAIKRMD 307 (550)
T ss_pred hhhccccccceeeeeeccCCceEEEEEEE
Confidence 5599999999999864 578999999985
No 173
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=66.33 E-value=5.3 Score=45.11 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.3
Q ss_pred ccceEeecCCCCcEEEEEeC
Q 043943 741 DEEYCIGKGAQGSLYKAKLQ 760 (775)
Q Consensus 741 ~~~~~iG~Gg~G~VYkg~l~ 760 (775)
...+.+|+|+||+||-|.-.
T Consensus 997 t~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen 997 TLGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred hhhhhhccCccceEEEecCC
Confidence 34567999999999999863
No 174
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=61.73 E-value=7.9 Score=37.81 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=24.2
Q ss_pred eecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 746 IGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 746 iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
||.|..|.|.|.... .|..+|||.+..
T Consensus 100 lGsGtcG~V~k~~~rs~~~iiAVK~M~r 127 (391)
T KOG0983|consen 100 LGSGTCGQVWKMRFRSTGHIIAVKQMRR 127 (391)
T ss_pred hcCCCccceEEEEEcccceEEEEEeecc
Confidence 999999999999985 589999999854
No 175
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.19 E-value=8 Score=22.75 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=7.7
Q ss_pred CCCcEEeCCCCcCc
Q 043943 589 ESLVKLNLSYNQLS 602 (775)
Q Consensus 589 ~~L~~L~ls~n~l~ 602 (775)
.+|+.|++++|+|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555666665554
No 176
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=57.76 E-value=8.6 Score=38.12 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=27.0
Q ss_pred cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
|..-..+|.|+||.|.-.+-. .|...|.|.|+-
T Consensus 46 fe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k 79 (355)
T KOG0616|consen 46 FERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDK 79 (355)
T ss_pred hhheeeeccCccceEEEEEEccCCceeehhhcCH
Confidence 555567999999999988874 688999999863
No 177
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=56.66 E-value=14 Score=36.42 Aligned_cols=28 Identities=7% Similarity=0.226 Sum_probs=24.1
Q ss_pred ceEee-cCCCCcEEEEEeCCCCEEEEEEcc
Q 043943 743 EYCIG-KGAQGSLYKAKLQSEDLIAVKKFN 771 (775)
Q Consensus 743 ~~~iG-~Gg~G~VYkg~l~~g~~vAVK~l~ 771 (775)
..+|| .||.|+||+... +|..+|||+..
T Consensus 36 ~~~lg~~~g~gtv~~v~~-~~~~~vlk~~~ 64 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQT-PGVNWVLRHYR 64 (239)
T ss_pred CceeecCCCCccEEEEEe-CCceEEEEEee
Confidence 46798 999999999999 57889999874
No 178
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.41 E-value=54 Score=35.02 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=21.6
Q ss_pred CCCeeeCcCCcCcCccC---CcCCCCCcCcEEEccCCcCC
Q 043943 324 CLFDLELSMNNLTGVIP---SSIGNLRNLRLLYLYRNELS 360 (775)
Q Consensus 324 ~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~ 360 (775)
-+..+.++.+......- ..+..-+.+..|++++|...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 35566666666553321 22344567778888877654
No 179
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=55.41 E-value=8.1 Score=23.10 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=6.9
Q ss_pred CCCEEEccCCcCc
Q 043943 541 KVHYLNLSNNEFS 553 (775)
Q Consensus 541 ~L~~L~Ls~n~l~ 553 (775)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 180
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=53.87 E-value=3 Score=48.80 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=32.9
Q ss_pred HHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 731 DQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.+++--..+|.--.+||+|+||.|.-.+.. .+++.|.|+|+.
T Consensus 68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK 110 (1317)
T KOG0612|consen 68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNK 110 (1317)
T ss_pred HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhH
Confidence 445445567888889999999999988874 567889999853
No 181
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.43 E-value=9.4 Score=22.43 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=7.4
Q ss_pred cccEEECcCCcCc
Q 043943 566 QLSELDLSQNFLE 578 (775)
Q Consensus 566 ~L~~L~Ls~n~l~ 578 (775)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 182
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=51.91 E-value=6 Score=40.75 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.6
Q ss_pred eecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 746 IGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 746 iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+|+|-||+|-++.= ..|+.||||-+..
T Consensus 61 LGkGTYGKVk~A~e~~sgR~VAiKsIrK 88 (668)
T KOG0611|consen 61 LGKGTYGKVKLAYEHKSGREVAIKSIRK 88 (668)
T ss_pred hcCCcccceeehhhccCCcEeehhhhhh
Confidence 99999999999876 4799999998754
No 183
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=51.20 E-value=11 Score=37.83 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=30.6
Q ss_pred cHHHHHHHhcccccceEeecCCCCcEEEEE-eCCCCEEEEEEccC
Q 043943 729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAK-LQSEDLIAVKKFNS 772 (775)
Q Consensus 729 ~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~-l~~g~~vAVK~l~~ 772 (775)
+|+|+-+-|. .++|+|+||.|--.+ +..|...|||.+..
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidK 113 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDK 113 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhc
Confidence 4778877774 459999999997554 46899999999854
No 184
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.37 E-value=1.4e+02 Score=32.16 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=10.1
Q ss_pred CCCCeeeccCccccCCCCc
Q 043943 299 NNLSILYLYSNQLSGSIPK 317 (775)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~ 317 (775)
+.+++++++.|.+....|.
T Consensus 165 pr~r~~dls~npi~dkvpi 183 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPI 183 (553)
T ss_pred chhhhhccCCCcccccCCc
Confidence 3455666666655544443
No 185
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=48.13 E-value=19 Score=34.10 Aligned_cols=31 Identities=23% Similarity=0.485 Sum_probs=27.6
Q ss_pred cccccceEeecCCC-CcEEEEEeCCCCEEEEEE
Q 043943 738 NDFDEEYCIGKGAQ-GSLYKAKLQSEDLIAVKK 769 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~-G~VYkg~l~~g~~vAVK~ 769 (775)
.+|.--..+|.|.- |.|||.++ +|+..|+|.
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKl 68 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKL 68 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEE
Confidence 55666678999999 99999999 889999998
No 186
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.40 E-value=13 Score=40.12 Aligned_cols=15 Identities=47% Similarity=0.574 Sum_probs=9.1
Q ss_pred CCCCCEEECCCCccc
Q 043943 515 LTELELLDLSENRLS 529 (775)
Q Consensus 515 l~~L~~L~ls~n~l~ 529 (775)
.+.+..+.|++|++.
T Consensus 217 ~p~i~sl~lsnNrL~ 231 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY 231 (585)
T ss_pred Ccceeeeecccchhh
Confidence 445556667776664
No 187
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=45.46 E-value=5.2 Score=42.85 Aligned_cols=38 Identities=34% Similarity=0.689 Sum_probs=31.2
Q ss_pred HHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 734 IRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 734 ~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.+-.++|.....+|+||||+|+.+... |+-..|||||.
T Consensus 45 sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkrit 83 (516)
T KOG1033|consen 45 SREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRIT 83 (516)
T ss_pred hhhhccccccccccccCccccCCccccccchhhHHHHhc
Confidence 344578999999999999999999875 55578999885
No 188
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=44.84 E-value=12 Score=37.70 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=6.4
Q ss_pred HHHHHhhheeccccc
Q 043943 688 SIISIGLLFNSRRTK 702 (775)
Q Consensus 688 ~~~~~~~~~~~r~~~ 702 (775)
+++++++++|+||++
T Consensus 271 IMvIIYLILRYRRKK 285 (299)
T PF02009_consen 271 IMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333344444554433
No 189
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.20 E-value=13 Score=48.33 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=24.2
Q ss_pred eCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC
Q 043943 595 NLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632 (775)
Q Consensus 595 ~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 632 (775)
||++|+|+.+.+..|..+.+|+.|+|++|++.|.|...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccH
Confidence 45666666666666666666666667777766666543
No 190
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.03 E-value=23 Score=27.66 Aligned_cols=19 Identities=5% Similarity=0.177 Sum_probs=7.8
Q ss_pred HHHHhhheecccccccccC
Q 043943 689 IISIGLLFNSRRTKMVSQT 707 (775)
Q Consensus 689 ~~~~~~~~~~r~~~~~~~~ 707 (775)
++++++.++++|+|.++..
T Consensus 47 ~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 47 LVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred HHHHHHHHHHHhhhccCCc
Confidence 3334444444444433333
No 191
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=43.44 E-value=14 Score=38.43 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=24.7
Q ss_pred eEeecCCCCcEEEEEeCC-CCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKLQS-EDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~ 772 (775)
++||+|.-|+||-+.+.+ +...|+|++..
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK 112 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDK 112 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEecH
Confidence 559999999999999954 47899999853
No 192
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.87 E-value=11 Score=37.83 Aligned_cols=36 Identities=28% Similarity=0.439 Sum_probs=28.3
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~ 773 (775)
++|+--+++|+|-||+|.--+= ..|+..|+|.|+.+
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKe 204 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKE 204 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhh
Confidence 5577778899999999976554 36889999998754
No 193
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=40.15 E-value=9.6 Score=41.17 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.9
Q ss_pred eEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943 744 YCIGKGAQGSLYKAKLQSEDLIAVKKFN 771 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~ 771 (775)
..||+||...|||..-.|.+.+|.|+..
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalkkv~ 394 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALKKVV 394 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhhHHH
Confidence 4499999999999999888999999864
No 194
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.38 E-value=7.1 Score=42.75 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=18.7
Q ss_pred eecCCCCcEEEEEeCCC-CEEEEEEc
Q 043943 746 IGKGAQGSLYKAKLQSE-DLIAVKKF 770 (775)
Q Consensus 746 iG~Gg~G~VYkg~l~~g-~~vAVK~l 770 (775)
+|.|+||+|||++-.+- ...|-|.+
T Consensus 40 LGDGAFGKVyKA~nket~~lAAaKvI 65 (1187)
T KOG0579|consen 40 LGDGAFGKVYKAVNKETKLLAAAKVI 65 (1187)
T ss_pred hcCccchhhhhhhcccchhhhhhhhh
Confidence 89999999999987543 33455655
No 195
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=38.23 E-value=25 Score=34.52 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=6.2
Q ss_pred HHHhhheecccccc
Q 043943 690 ISIGLLFNSRRTKM 703 (775)
Q Consensus 690 ~~~~~~~~~r~~~~ 703 (775)
++++.|++|||++.
T Consensus 276 iiLYiWlyrrRK~s 289 (295)
T TIGR01478 276 IILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHhhccc
Confidence 33344444544443
No 196
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=37.72 E-value=33 Score=34.06 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=25.3
Q ss_pred eEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943 744 YCIGKGAQGSLYKAKLQSEDLIAVKKFN 771 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~~g~~vAVK~l~ 771 (775)
+.||.|-=+.||.|.-++|..+|||-=.
T Consensus 97 ~~IGvGKEsdVY~~~~~~g~~~~vKfHR 124 (304)
T COG0478 97 TKIGVGKESDVYVAIDPKGRKVAVKFHR 124 (304)
T ss_pred cccccCccceEEEEECCCCCEEEEEEee
Confidence 5699999999999999999999999643
No 197
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.55 E-value=26 Score=20.35 Aligned_cols=11 Identities=45% Similarity=0.407 Sum_probs=6.0
Q ss_pred CCCCEEeCcCC
Q 043943 107 FKLQYLDLSAN 117 (775)
Q Consensus 107 ~~L~~L~ls~n 117 (775)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 198
>PTZ00046 rifin; Provisional
Probab=35.58 E-value=24 Score=36.19 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=7.1
Q ss_pred HHHHhhheecccccc
Q 043943 689 IISIGLLFNSRRTKM 703 (775)
Q Consensus 689 ~~~~~~~~~~r~~~~ 703 (775)
++++++.+|+||+++
T Consensus 331 MvIIYLILRYRRKKK 345 (358)
T PTZ00046 331 MVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHhhhcch
Confidence 333444555555543
No 199
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=35.33 E-value=31 Score=35.37 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=11.7
Q ss_pred eehhhHHHHHHHHHHHHHHhhheeccc
Q 043943 674 IIMILLPLLGVLALSIISIGLLFNSRR 700 (775)
Q Consensus 674 ~i~i~~~~~~~~~~~~~~~~~~~~~r~ 700 (775)
++.|+++++++.++++++++++..|||
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 344444444444444444444444443
No 200
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=35.26 E-value=14 Score=44.38 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=29.3
Q ss_pred HhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
.|-++...+.||.|-||.||-|+= +.|...|||-+.
T Consensus 1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~ 1269 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIK 1269 (1509)
T ss_pred ceeeeccccccCCcceeeeEEeecCCccchhhhhhhh
Confidence 445566678999999999999875 578899999875
No 201
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=34.87 E-value=1.1e+02 Score=25.35 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=17.1
Q ss_pred eEeecC---CCCcEEEEEeCCCCEEEEE
Q 043943 744 YCIGKG---AQGSLYKAKLQSEDLIAVK 768 (775)
Q Consensus 744 ~~iG~G---g~G~VYkg~l~~g~~vAVK 768 (775)
-.||+| .-|++|| +.||+.+-|-
T Consensus 88 ~~iggg~g~~lGt~yR--~adgr~I~Vp 113 (121)
T COG4744 88 ARIGGGTGEALGTAYR--LADGRVIYVP 113 (121)
T ss_pred ccccCcccceeeeEEe--cCCCeEEEec
Confidence 347777 3589999 7799887763
No 202
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=34.59 E-value=26 Score=35.89 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=6.7
Q ss_pred HHHhhheecccccc
Q 043943 690 ISIGLLFNSRRTKM 703 (775)
Q Consensus 690 ~~~~~~~~~r~~~~ 703 (775)
+++++.+|+||+++
T Consensus 327 vIIYLILRYRRKKK 340 (353)
T TIGR01477 327 VIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHhhhcch
Confidence 33444455555543
No 203
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=34.45 E-value=34 Score=37.58 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=29.1
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.++.-...||+|.||+|.-|.-. .|..||||.++.
T Consensus 55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idk 91 (596)
T KOG0586|consen 55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDK 91 (596)
T ss_pred ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehh
Confidence 445555677999999999999874 689999998864
No 204
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=33.34 E-value=30 Score=27.92 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=15.3
Q ss_pred ecC-CCCcEEEEEeCCCCEEEE
Q 043943 747 GKG-AQGSLYKAKLQSEDLIAV 767 (775)
Q Consensus 747 G~G-g~G~VYkg~l~~g~~vAV 767 (775)
|+| .-|+||| ++||+.|=|
T Consensus 71 G~G~~~G~aYr--l~~Gk~I~V 90 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKLIYV 90 (92)
T ss_pred CCCeECeEEEE--cCCceEEEe
Confidence 455 6789999 899998866
No 205
>PTZ00370 STEVOR; Provisional
Probab=32.86 E-value=27 Score=34.41 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=5.8
Q ss_pred HHhhheecccccc
Q 043943 691 SIGLLFNSRRTKM 703 (775)
Q Consensus 691 ~~~~~~~~r~~~~ 703 (775)
+++.|++|||++.
T Consensus 273 ilYiwlyrrRK~s 285 (296)
T PTZ00370 273 ILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHhhcch
Confidence 3344444544443
No 206
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=31.14 E-value=33 Score=32.29 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=10.0
Q ss_pred ceeeehhhHHHHHHHHHHHH
Q 043943 671 KKLIIMILLPLLGVLALSII 690 (775)
Q Consensus 671 ~~~~i~i~~~~~~~~~~~~~ 690 (775)
..+.++|+++++++++++++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~ 175 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIM 175 (189)
T ss_pred cceeEEEEccHHHHHHHHHH
Confidence 34455666665554443333
No 207
>PRK14051 negative regulator GrlR; Provisional
Probab=30.44 E-value=52 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=20.0
Q ss_pred ceEeecCCCCcEEEEEeCCCCEEEEE
Q 043943 743 EYCIGKGAQGSLYKAKLQSEDLIAVK 768 (775)
Q Consensus 743 ~~~iG~Gg~G~VYkg~l~~g~~vAVK 768 (775)
.++|-.|-+|.||.|.+.+...+.+|
T Consensus 28 ~nkInGGD~~~~YqG~isEd~~iilh 53 (123)
T PRK14051 28 GNMITGGDIASVYQGVLSEDEDIILH 53 (123)
T ss_pred CCEecCCccceEEeccccccceeEEE
Confidence 47788899999999999876543333
No 208
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=30.20 E-value=86 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=31.1
Q ss_pred ccHHHHHHHhcccccceEeecCCCC---cEEEEEeCCCCEEEEEEccCC
Q 043943 728 ITYDQIIRATNDFDEEYCIGKGAQG---SLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 728 ~~~~~l~~aT~~f~~~~~iG~Gg~G---~VYkg~l~~g~~vAVK~l~~~ 773 (775)
.+.+.|.+.-+.-.-..+.|..+.| .||+|.-.+|..||||.....
T Consensus 35 ~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~ 83 (268)
T COG1718 35 RTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTS 83 (268)
T ss_pred HHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehh
Confidence 4556665554444444555555555 799999888999999987543
No 209
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=30.00 E-value=17 Score=37.48 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=26.1
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++.|.--..+|+|.||.|-+-.-. .+..||||.++.
T Consensus 88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~ 124 (415)
T KOG0671|consen 88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKN 124 (415)
T ss_pred ccceehhhhhcCCcccceEEEeecCCCceehHHHHHH
Confidence 334444456999999999876543 368999998764
No 210
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=29.67 E-value=49 Score=36.33 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=26.0
Q ss_pred ccccceEeecCCCCcEEEEEeCC-CCEEEEEEcc
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQS-EDLIAVKKFN 771 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~ 771 (775)
+|..-..+|+|+||.|.-+.-.. --.|.||.+.
T Consensus 562 ~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~ 595 (772)
T KOG1152|consen 562 DYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIF 595 (772)
T ss_pred cceeeeeccccccceEEEeeecccceEEEeeehh
Confidence 35566789999999999998853 4578889874
No 211
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.25 E-value=44 Score=31.37 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=10.1
Q ss_pred ceeeehhhHHHHHHHHHHHHHH
Q 043943 671 KKLIIMILLPLLGVLALSIISI 692 (775)
Q Consensus 671 ~~~~i~i~~~~~~~~~~~~~~~ 692 (775)
..++++++++++.+++++++++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v 58 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVV 58 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHH
Confidence 3445555554444444443333
No 212
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=28.33 E-value=41 Score=36.37 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=22.8
Q ss_pred eecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 746 IGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 746 iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.|+|-|++|.+|.=. -|+.||||.+..
T Consensus 440 ~GkGvFs~Vvra~D~~r~~~vAiKIIRn 467 (752)
T KOG0670|consen 440 TGKGVFSTVVRARDQARGQEVAIKIIRN 467 (752)
T ss_pred cccceeeeeeeccccCCCCeeEEEEeec
Confidence 689999999999853 588999999853
No 213
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.82 E-value=19 Score=36.12 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=28.6
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|+--.+||+|+|.+|..+.+. ..+..|+|.++.
T Consensus 250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkk 285 (593)
T KOG0695|consen 250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKK 285 (593)
T ss_pred ccceeeeeecCcchhhhhheehcccceeeehhhHHH
Confidence 56777799999999999999985 456789988753
No 214
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=27.75 E-value=15 Score=34.97 Aligned_cols=29 Identities=10% Similarity=0.358 Sum_probs=24.6
Q ss_pred eEeecCCCCcEEEEE-eCCCCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAK-LQSEDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~-l~~g~~vAVK~l~~ 772 (775)
+++|+|.|..|+.|. +.+.+.+.||.|++
T Consensus 44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKP 73 (338)
T KOG0668|consen 44 RKVGRGKYSEVFEGINITNNEKCVIKILKP 73 (338)
T ss_pred HHHcCccHhhHhcccccCCCceEEEeeech
Confidence 569999999999997 35778899999875
No 215
>PF15102 TMEM154: TMEM154 protein family
Probab=26.44 E-value=72 Score=28.10 Aligned_cols=7 Identities=71% Similarity=1.402 Sum_probs=3.2
Q ss_pred eehhhHH
Q 043943 674 IIMILLP 680 (775)
Q Consensus 674 ~i~i~~~ 680 (775)
+++|+++
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 4444444
No 216
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.76 E-value=36 Score=37.02 Aligned_cols=38 Identities=37% Similarity=0.350 Sum_probs=19.5
Q ss_pred ccCCCCcEEeCCCccceeec--CcCcCCCCCCCEEEcccC
Q 043943 417 GTYPTLSFLDLSHNNFHGQI--SSDWGRFPQLGTLDFSVN 454 (775)
Q Consensus 417 ~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n 454 (775)
.+.|.+..+.+++|++.... ..--...|+|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34566667777777654221 111123455566666655
No 217
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=25.49 E-value=23 Score=39.02 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.7
Q ss_pred EeecCCCCcEEEEEeC-CCCEEE
Q 043943 745 CIGKGAQGSLYKAKLQ-SEDLIA 766 (775)
Q Consensus 745 ~iG~Gg~G~VYkg~l~-~g~~vA 766 (775)
+||+|+|=+||||.=. +|..||
T Consensus 47 vLGrGafKtVYka~De~~giEVA 69 (632)
T KOG0584|consen 47 VLGRGAFKTVYKAFDEEEGIEVA 69 (632)
T ss_pred hcccccceeeeeccccccchhhH
Confidence 3999999999999753 466666
No 218
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=21.21 E-value=1.2e+02 Score=28.68 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=2.6
Q ss_pred hheeccc
Q 043943 694 LLFNSRR 700 (775)
Q Consensus 694 ~~~~~r~ 700 (775)
++++.||
T Consensus 122 Y~~~~Rr 128 (202)
T PF06365_consen 122 YCCHQRR 128 (202)
T ss_pred HHhhhhc
Confidence 3333333
No 219
>PHA03281 envelope glycoprotein E; Provisional
Probab=21.16 E-value=3.7e+02 Score=29.41 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=5.8
Q ss_pred ee--cCCCC-cEEE
Q 043943 746 IG--KGAQG-SLYK 756 (775)
Q Consensus 746 iG--~Gg~G-~VYk 756 (775)
|| .||.| +||-
T Consensus 624 ~~~~~~~~~~~~~~ 637 (642)
T PHA03281 624 IGAECGGSGYTVYI 637 (642)
T ss_pred cccccCCcceEEEE
Confidence 76 34444 5663
No 220
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=20.71 E-value=24 Score=29.12 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhheeccc
Q 043943 683 GVLALSIISIGLLFNSRR 700 (775)
Q Consensus 683 ~~~~~~~~~~~~~~~~r~ 700 (775)
.+++.+++++.+|++|||
T Consensus 33 ~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 33 IVILGILLLIGCWYCKRR 50 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHhheeeeec
Confidence 333333444444444443
No 221
>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]
Probab=20.44 E-value=42 Score=35.42 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=29.6
Q ss_pred HHHHHhcccccceEeecCCCCcEEEEEeC-------C---------CCEEEEEEccCCC
Q 043943 732 QIIRATNDFDEEYCIGKGAQGSLYKAKLQ-------S---------EDLIAVKKFNSQL 774 (775)
Q Consensus 732 ~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-------~---------g~~vAVK~l~~~~ 774 (775)
.+.++-..|++ .-||.|.-..||+|.+. + -+.+|||.++.++
T Consensus 184 ~~~eiF~efn~-~PIGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V 241 (565)
T KOG1236|consen 184 KIEEIFSEFNR-EPIGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNV 241 (565)
T ss_pred cHHHHHHhcCC-cccccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccH
Confidence 34444444554 35899999999999873 1 2469999998764
Done!