Query 043943
Match_columns 775
No_of_seqs 733 out of 5349
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-86 6.1E-91 774.5 49.6 644 1-662 2-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 6E-69 2.1E-73 626.7 41.9 562 57-627 99-741 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-61 1.1E-65 557.5 48.7 568 83-651 25-624 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.6E-60 9E-65 549.9 49.7 572 57-631 24-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4.6E-57 1.6E-61 515.7 41.3 526 83-632 33-566 (606)
6 3t6q_A CD180 antigen; protein- 100.0 5.2E-56 1.8E-60 507.0 42.6 517 58-606 33-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-55 1.1E-59 500.5 39.2 522 83-633 32-565 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 9.8E-55 3.3E-59 512.3 37.9 522 81-633 22-567 (844)
9 3vq2_A TLR4, TOLL-like recepto 100.0 4.4E-54 1.5E-58 491.1 37.9 520 57-606 31-562 (606)
10 4eco_A Uncharacterized protein 100.0 1E-54 3.4E-59 495.0 22.8 503 6-553 25-600 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 7.7E-53 2.6E-57 496.1 38.5 517 46-604 13-562 (844)
12 4ecn_A Leucine-rich repeat pro 100.0 5.8E-52 2E-56 478.3 30.9 486 4-528 262-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 6.3E-50 2.2E-54 453.7 35.7 518 85-634 9-539 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 3.4E-49 1.1E-53 447.8 34.3 489 83-606 28-535 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 9.9E-48 3.4E-52 433.3 31.2 492 106-631 4-515 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-47 9.8E-52 429.5 33.7 498 46-606 3-514 (549)
17 4eco_A Uncharacterized protein 100.0 3.8E-48 1.3E-52 440.8 18.5 513 8-581 24-603 (636)
18 4g8a_A TOLL-like receptor 4; l 100.0 3.6E-45 1.2E-49 420.8 38.9 518 83-632 52-586 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-45 5.7E-50 411.9 29.7 465 110-631 3-486 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-45 6.5E-50 411.4 26.9 449 87-579 4-482 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 1.2E-44 4E-49 417.6 28.1 464 107-601 323-863 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-42 2E-46 394.0 38.5 533 87-651 35-582 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-42 1.1E-46 388.3 29.4 465 106-633 30-517 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-41 4.3E-46 383.4 27.6 454 61-555 34-512 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-40 4.7E-45 344.5 22.3 293 6-310 1-302 (313)
26 3v47_A TOLL-like receptor 5B a 100.0 3.2E-39 1.1E-43 354.8 30.1 382 230-633 13-415 (455)
27 3v47_A TOLL-like receptor 5B a 100.0 9.4E-39 3.2E-43 351.1 32.5 390 134-557 13-412 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 2.8E-39 9.6E-44 351.3 24.0 424 82-610 10-437 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 5.4E-38 1.9E-42 341.2 27.0 412 58-563 11-439 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-36 4E-41 331.0 30.4 363 96-559 31-393 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-36 9.8E-41 328.0 29.7 359 77-536 36-394 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 2.5E-36 8.5E-41 333.5 24.1 345 278-651 14-358 (477)
33 1o6v_A Internalin A; bacterial 100.0 2.9E-35 1E-39 323.2 31.9 346 81-482 44-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 3.2E-35 1.1E-39 322.9 31.4 347 104-506 43-389 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 6.5E-35 2.2E-39 322.1 28.2 303 83-385 32-334 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 4.3E-34 1.5E-38 306.7 26.3 316 81-414 43-358 (390)
37 3oja_B Anopheles plasmodium-re 100.0 2.4E-33 8.3E-38 317.3 27.9 311 81-409 49-359 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 8.4E-33 2.9E-37 296.6 23.7 334 273-651 43-376 (390)
39 3oja_B Anopheles plasmodium-re 100.0 7.5E-33 2.6E-37 313.3 24.1 335 273-652 49-383 (597)
40 4fmz_A Internalin; leucine ric 100.0 5.4E-32 1.8E-36 285.7 27.4 305 79-406 40-344 (347)
41 4fmz_A Internalin; leucine ric 100.0 1.6E-31 5.6E-36 282.0 28.8 307 271-626 40-346 (347)
42 4fcg_A Uncharacterized protein 100.0 4.4E-33 1.5E-37 289.8 16.2 283 6-311 22-313 (328)
43 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-32 8.8E-37 282.4 18.8 252 397-652 52-307 (313)
44 1xku_A Decorin; proteoglycan, 100.0 4.1E-30 1.4E-34 268.9 28.7 223 83-312 52-276 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-30 9.6E-35 270.3 27.1 286 84-380 34-329 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 5.6E-30 1.9E-34 268.1 26.8 267 107-384 33-307 (332)
47 1xku_A Decorin; proteoglycan, 100.0 9.7E-30 3.3E-34 266.1 28.3 250 84-343 32-283 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-33 4.7E-38 310.5 -7.2 380 227-626 3-440 (461)
49 1z7x_W Ribonuclease inhibitor; 100.0 9.8E-34 3.4E-38 311.7 -10.0 158 179-336 3-183 (461)
50 2z66_A Variable lymphocyte rec 100.0 6.9E-29 2.4E-33 256.7 20.4 284 45-344 5-295 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 8E-29 2.7E-33 261.6 17.2 288 42-364 25-318 (353)
52 3ogk_B Coronatine-insensitive 100.0 4.8E-31 1.6E-35 300.0 -1.8 304 273-580 190-528 (592)
53 3ogk_B Coronatine-insensitive 100.0 3.4E-31 1.2E-35 301.3 -3.7 416 123-560 65-533 (592)
54 2z80_A TOLL-like receptor 2, v 100.0 2.4E-28 8.2E-33 258.0 17.9 281 83-387 31-317 (353)
55 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.6E-32 247.8 18.7 248 86-361 10-262 (306)
56 1ozn_A Reticulon 4 receptor; N 100.0 2.7E-27 9.4E-32 241.9 20.6 225 61-289 14-239 (285)
57 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-27 7.5E-32 242.6 17.2 225 86-313 14-239 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 2.1E-26 7.1E-31 251.7 26.0 90 271-360 214-303 (452)
59 4fcg_A Uncharacterized protein 99.9 3.8E-27 1.3E-31 245.1 19.1 234 82-335 80-313 (328)
60 3zyj_A Leucine-rich repeat-con 99.9 2.5E-26 8.5E-31 250.1 26.3 106 83-188 64-169 (440)
61 3zyj_A Leucine-rich repeat-con 99.9 4.1E-26 1.4E-30 248.4 27.0 247 85-360 45-292 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 3.7E-26 1.3E-30 249.6 26.6 247 85-336 56-303 (452)
63 2o6q_A Variable lymphocyte rec 99.9 1.8E-25 6.2E-30 226.1 22.8 217 44-288 2-218 (270)
64 1wwl_A Monocyte differentiatio 99.9 9.2E-28 3.1E-32 248.4 5.0 248 104-361 40-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-27 8.3E-32 245.9 5.8 257 85-379 12-270 (317)
66 2p1m_B Transport inhibitor res 99.9 1E-29 3.4E-34 289.3 -14.0 456 44-527 32-542 (594)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-25 5.7E-30 250.0 20.1 279 42-389 17-302 (622)
68 1wwl_A Monocyte differentiatio 99.9 2.9E-27 9.9E-32 244.7 5.0 249 79-337 39-310 (312)
69 2p1m_B Transport inhibitor res 99.9 9E-29 3.1E-33 281.5 -7.5 110 488-599 428-541 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.9 7.6E-27 2.6E-31 242.1 6.8 264 109-410 12-278 (317)
71 3oja_A Leucine-rich immune mol 99.9 1.2E-25 3.9E-30 246.8 12.9 234 372-621 35-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 3.5E-24 1.2E-28 217.7 21.8 211 420-632 28-243 (276)
73 3oja_A Leucine-rich immune mol 99.9 8.4E-26 2.9E-30 247.8 10.1 215 108-336 35-250 (487)
74 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-23 9.2E-28 232.2 28.3 268 228-564 41-308 (622)
75 2z62_A TOLL-like receptor 4, v 99.9 1.6E-23 5.3E-28 212.9 20.3 205 83-288 28-237 (276)
76 2o6q_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 209.0 22.6 206 421-630 17-222 (270)
77 3rfs_A Internalin B, repeat mo 99.9 6.4E-23 2.2E-27 207.4 18.8 208 103-321 37-244 (272)
78 3rfs_A Internalin B, repeat mo 99.9 9.1E-23 3.1E-27 206.3 18.6 213 78-301 36-248 (272)
79 1p9a_G Platelet glycoprotein I 99.9 5.1E-22 1.8E-26 202.2 22.6 203 78-287 5-207 (290)
80 1p9a_G Platelet glycoprotein I 99.9 6.2E-22 2.1E-26 201.6 22.7 203 102-311 5-207 (290)
81 2ast_B S-phase kinase-associat 99.9 1.3E-24 4.5E-29 228.0 1.6 267 44-320 34-314 (336)
82 3m19_A Variable lymphocyte rec 99.9 6.7E-22 2.3E-26 197.4 19.6 142 45-192 3-144 (251)
83 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.8E-26 194.4 17.7 178 84-264 32-218 (239)
84 4glp_A Monocyte differentiatio 99.9 7.6E-22 2.6E-26 203.8 15.5 201 131-337 91-308 (310)
85 4glp_A Monocyte differentiatio 99.9 2.2E-22 7.5E-27 207.9 11.1 204 419-627 90-308 (310)
86 3goz_A Leucine-rich repeat-con 99.9 2E-23 6.9E-28 220.7 3.0 257 351-628 2-299 (362)
87 2ast_B S-phase kinase-associat 99.9 2.4E-23 8.3E-28 218.3 3.4 222 84-309 48-282 (336)
88 3m19_A Variable lymphocyte rec 99.9 3.7E-21 1.3E-25 192.0 19.1 179 446-628 16-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 1.8E-21 6.2E-26 192.9 16.2 197 107-309 31-236 (239)
90 3goz_A Leucine-rich repeat-con 99.9 4.1E-23 1.4E-27 218.3 4.0 223 88-310 3-264 (362)
91 2ca6_A RAN GTPase-activating p 99.9 4.1E-23 1.4E-27 220.8 2.7 188 441-629 91-319 (386)
92 2ca6_A RAN GTPase-activating p 99.9 2.4E-23 8.2E-28 222.5 0.8 137 420-556 159-319 (386)
93 1h6u_A Internalin H; cell adhe 99.9 6.2E-21 2.1E-25 196.3 16.8 193 80-288 38-230 (308)
94 1h6u_A Internalin H; cell adhe 99.8 9.1E-21 3.1E-25 195.1 16.8 206 89-312 25-230 (308)
95 2o6s_A Variable lymphocyte rec 99.8 1.4E-20 4.9E-25 182.0 16.3 156 44-214 4-159 (208)
96 4ay9_X Follicle-stimulating ho 99.8 8.6E-20 3E-24 191.7 17.3 188 83-295 30-222 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1.8E-19 6.3E-24 174.2 17.2 181 86-276 10-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 7.2E-19 2.4E-23 184.7 19.4 199 110-312 12-215 (350)
99 3cvr_A Invasion plasmid antige 99.8 2.5E-19 8.4E-24 197.6 12.7 203 43-299 39-254 (571)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-18 5E-23 168.9 15.9 158 471-632 14-172 (220)
101 2v9t_B SLIT homolog 2 protein 99.8 2.1E-18 7.3E-23 167.7 15.6 157 471-631 14-170 (220)
102 3cvr_A Invasion plasmid antige 99.8 3.9E-18 1.3E-22 188.1 18.6 187 108-322 60-253 (571)
103 3e6j_A Variable lymphocyte rec 99.8 6.5E-18 2.2E-22 165.5 17.9 158 42-215 14-171 (229)
104 1m9s_A Internalin B; cell inva 99.8 3.6E-18 1.2E-22 190.7 17.0 190 85-290 23-212 (605)
105 2xot_A Amphoterin-induced prot 99.8 1.4E-18 4.9E-23 183.1 13.0 160 470-630 41-206 (361)
106 1h6t_A Internalin B; cell adhe 99.8 2.6E-18 8.9E-23 175.0 14.0 170 105-288 44-213 (291)
107 3e6j_A Variable lymphocyte rec 99.8 7E-18 2.4E-22 165.3 16.1 137 492-630 40-176 (229)
108 1h6t_A Internalin B; cell adhe 99.8 2.6E-18 9E-23 175.0 12.8 173 79-265 42-214 (291)
109 2v9t_B SLIT homolog 2 protein 99.8 1.6E-17 5.5E-22 161.5 16.8 132 83-214 32-163 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-17 3.7E-22 162.7 14.9 154 448-605 15-169 (220)
111 1m9s_A Internalin B; cell inva 99.7 7E-18 2.4E-22 188.4 14.9 192 107-314 21-212 (605)
112 4b8c_D Glucose-repressible alc 99.7 2.5E-19 8.4E-24 205.5 1.9 201 6-223 127-336 (727)
113 2xot_A Amphoterin-induced prot 99.7 2.4E-17 8.3E-22 173.7 15.0 128 110-240 21-149 (361)
114 3sb4_A Hypothetical leucine ri 99.7 2.8E-18 9.4E-23 178.6 5.8 286 81-377 23-327 (329)
115 4ezg_A Putative uncharacterize 99.7 3.2E-17 1.1E-21 156.7 11.9 151 468-626 44-194 (197)
116 4ezg_A Putative uncharacterize 99.7 3.3E-17 1.1E-21 156.5 11.5 151 106-264 43-194 (197)
117 1w8a_A SLIT protein; signaling 99.7 2.8E-17 9.6E-22 156.1 9.9 133 495-631 11-144 (192)
118 4fdw_A Leucine rich hypothetic 99.7 2.2E-15 7.4E-20 159.8 24.7 266 105-383 111-382 (401)
119 3sb4_A Hypothetical leucine ri 99.7 1E-17 3.5E-22 174.3 6.7 285 105-402 23-328 (329)
120 4b8c_D Glucose-repressible alc 99.7 1.6E-17 5.4E-22 190.5 8.9 193 426-629 207-407 (727)
121 1xeu_A Internalin C; cellular 99.7 1.7E-17 5.8E-22 166.2 7.0 167 84-289 20-186 (263)
122 4fdw_A Leucine rich hypothetic 99.7 3.2E-15 1.1E-19 158.5 24.3 265 129-406 111-381 (401)
123 1xeu_A Internalin C; cellular 99.7 3.4E-17 1.2E-21 164.0 8.4 170 106-314 18-187 (263)
124 4fs7_A Uncharacterized protein 99.7 3.4E-15 1.2E-19 159.3 23.0 334 144-545 60-393 (394)
125 4fs7_A Uncharacterized protein 99.7 3.6E-15 1.2E-19 159.2 23.1 290 74-379 62-351 (394)
126 1dce_A Protein (RAB geranylger 99.7 1.1E-18 3.7E-23 193.8 -4.8 201 320-555 346-548 (567)
127 1dce_A Protein (RAB geranylger 99.7 1.6E-18 5.4E-23 192.5 -4.9 217 296-547 346-567 (567)
128 1w8a_A SLIT protein; signaling 99.6 3.5E-15 1.2E-19 141.6 14.1 132 423-557 11-143 (192)
129 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.2E-20 136.2 11.2 128 492-622 17-149 (149)
130 2ell_A Acidic leucine-rich nuc 99.6 2.1E-15 7.2E-20 140.0 10.7 133 82-216 23-160 (168)
131 2ell_A Acidic leucine-rich nuc 99.6 4.2E-15 1.4E-19 138.0 12.3 133 492-627 24-161 (168)
132 2wfh_A SLIT homolog 2 protein 99.6 7.1E-15 2.4E-19 139.4 13.6 131 496-631 14-144 (193)
133 2je0_A Acidic leucine-rich nuc 99.6 2.2E-15 7.6E-20 136.7 8.3 128 82-211 16-148 (149)
134 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 136.0 13.2 114 516-630 28-141 (177)
135 2o6r_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 133.2 14.7 135 45-194 5-139 (177)
136 2wfh_A SLIT homolog 2 protein 99.5 5.7E-14 1.9E-18 133.1 15.0 124 86-213 13-136 (193)
137 4gt6_A Cell surface protein; l 99.5 2.1E-12 7E-17 137.8 25.2 159 74-238 54-216 (394)
138 4gt6_A Cell surface protein; l 99.5 3.9E-12 1.3E-16 135.6 25.2 110 437-552 281-390 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 8.6E-14 2.9E-18 130.0 10.3 106 517-627 43-154 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.9E-18 129.2 10.2 135 463-603 14-154 (176)
141 1ds9_A Outer arm dynein; leuci 99.5 9.3E-16 3.2E-20 146.6 -4.5 151 468-626 18-185 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.7E-20 145.4 -8.2 132 417-553 15-153 (198)
143 3g39_A Variable lymphocyte rec 99.4 9.9E-13 3.4E-17 121.7 11.1 108 519-630 12-119 (170)
144 2r9u_A Variable lymphocyte rec 99.3 3.2E-12 1.1E-16 118.7 11.1 90 540-630 33-122 (174)
145 3g39_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 115.7 12.8 85 107-191 30-114 (170)
146 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 114.7 12.6 86 107-192 33-118 (174)
147 4h09_A Hypothetical leucine ri 99.2 7.9E-10 2.7E-14 117.2 23.9 300 80-404 43-342 (379)
148 3un9_A NLR family member X1; l 99.2 2.6E-13 9E-18 142.4 -3.1 136 468-604 101-254 (372)
149 4h09_A Hypothetical leucine ri 99.2 1.4E-09 4.7E-14 115.3 24.7 259 59-330 47-317 (379)
150 3un9_A NLR family member X1; l 99.2 9.9E-13 3.4E-17 138.0 -0.7 160 467-627 71-253 (372)
151 2ifg_A High affinity nerve gro 99.1 1.1E-10 3.9E-15 122.1 9.9 104 496-603 12-117 (347)
152 2ifg_A High affinity nerve gro 99.0 6.5E-10 2.2E-14 116.3 11.5 108 47-168 8-116 (347)
153 2ra8_A Uncharacterized protein 98.8 1E-09 3.5E-14 113.9 3.0 40 250-289 278-321 (362)
154 2ra8_A Uncharacterized protein 98.8 1.6E-09 5.4E-14 112.4 4.3 155 464-624 168-341 (362)
155 3rw6_A Nuclear RNA export fact 98.6 2.1E-09 7.3E-14 105.3 -3.5 21 45-65 76-97 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 1.3E-07 4.4E-12 88.3 3.8 120 486-626 30-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 9.6E-08 3.3E-12 89.2 2.5 91 78-168 31-136 (185)
158 3rw6_A Nuclear RNA export fact 98.2 2.5E-07 8.5E-12 90.6 1.2 79 538-619 168-257 (267)
159 3e4g_A ATP synthase subunit S, 97.9 3.2E-06 1.1E-10 76.5 3.0 85 516-600 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.1E-11 77.0 2.2 82 470-551 63-150 (176)
161 4gt4_A Tyrosine-protein kinase 97.7 5.9E-06 2E-10 83.6 1.0 42 730-773 20-67 (308)
162 2nru_A Interleukin-1 receptor- 97.7 3.1E-05 1.1E-09 78.9 5.8 46 726-772 13-64 (307)
163 3uim_A Brassinosteroid insensi 97.5 4.5E-05 1.5E-09 78.4 3.7 48 725-772 17-64 (326)
164 4aoj_A High affinity nerve gro 97.3 0.0001 3.5E-09 75.2 3.5 35 739-773 42-82 (329)
165 2c30_A Serine/threonine-protei 97.3 0.00016 5.6E-09 74.0 4.9 47 726-772 23-80 (321)
166 2qkw_B Protein kinase; three-h 97.2 6.7E-05 2.3E-09 76.9 1.1 47 727-773 28-74 (321)
167 3p1a_A MYT1 kinase, membrane-a 97.1 9.3E-05 3.2E-09 75.4 0.2 35 738-772 57-92 (311)
168 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00047 1.6E-08 63.5 4.4 116 488-624 37-168 (197)
169 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0005 1.7E-08 63.3 3.4 62 489-550 67-136 (197)
170 3omv_A RAF proto-oncogene seri 96.8 0.00056 1.9E-08 68.7 3.4 31 740-772 38-68 (307)
171 3rfe_A Platelet glycoprotein I 96.7 0.0029 9.9E-08 54.4 6.7 60 569-630 12-72 (130)
172 4g3f_A NF-kappa-beta-inducing 96.7 0.00076 2.6E-08 68.6 3.1 36 737-772 57-93 (336)
173 4fih_A Serine/threonine-protei 96.6 0.0012 4.2E-08 67.3 4.2 32 740-771 76-108 (346)
174 4aw2_A Serine/threonine-protei 96.5 0.00076 2.6E-08 71.9 2.3 44 728-771 64-108 (437)
175 3fpq_A Serine/threonine-protei 96.5 0.0014 4.7E-08 65.3 3.9 28 744-771 32-60 (290)
176 3dzo_A Rhoptry kinase domain; 96.5 0.001 3.5E-08 70.6 2.8 37 735-771 75-112 (413)
177 4b9d_A Serine/threonine-protei 96.4 0.0015 5E-08 66.8 3.5 35 738-772 24-59 (350)
178 2vd5_A DMPK protein; serine/th 96.4 0.0015 5.1E-08 69.1 3.3 45 727-771 50-95 (412)
179 3kul_A Ephrin type-A receptor 96.4 0.0022 7.6E-08 65.5 4.5 47 727-773 29-88 (325)
180 4fie_A Serine/threonine-protei 96.3 0.0022 7.5E-08 67.3 4.4 34 738-771 151-185 (423)
181 4ase_A Vascular endothelial gr 96.3 0.002 7E-08 66.2 4.0 36 738-773 64-105 (353)
182 4b99_A Mitogen-activated prote 96.3 0.0025 8.6E-08 66.7 4.7 34 739-772 55-89 (398)
183 4aw0_A HPDK1, 3-phosphoinositi 96.2 0.0022 7.4E-08 64.4 3.3 34 738-771 32-66 (311)
184 3ubd_A Ribosomal protein S6 ki 96.0 0.0033 1.1E-07 63.0 3.5 34 739-772 25-62 (304)
185 3soc_A Activin receptor type-2 96.0 0.0035 1.2E-07 64.0 3.6 34 738-772 24-57 (322)
186 3v8s_A RHO-associated protein 96.0 0.0028 9.6E-08 66.9 2.9 43 729-771 60-103 (410)
187 1qcf_A Haematopoetic cell kina 95.9 0.004 1.4E-07 67.0 3.8 37 737-773 187-223 (454)
188 2qol_A Ephrin receptor; recept 95.9 0.0044 1.5E-07 64.7 4.0 36 738-773 45-84 (373)
189 3rfe_A Platelet glycoprotein I 95.8 0.0092 3.1E-07 51.2 5.1 56 544-602 12-68 (130)
190 3e7e_A HBUB1, BUB1A, mitotic c 95.8 0.0035 1.2E-07 65.3 2.9 38 736-773 63-106 (365)
191 1zar_A RIO2 kinase; serine kin 95.8 0.0059 2E-07 60.7 4.4 42 731-772 83-124 (282)
192 3e3p_A Protein kinase, putativ 95.7 0.0056 1.9E-07 63.5 4.0 42 731-772 16-58 (360)
193 3cbl_A C-FES, proto-oncogene t 95.7 0.0062 2.1E-07 63.7 4.1 36 738-773 114-150 (377)
194 2y7j_A Phosphorylase B kinase 95.6 0.0078 2.7E-07 62.6 4.6 43 730-772 86-129 (365)
195 3llt_A Serine/threonine kinase 95.6 0.0025 8.6E-08 66.2 0.8 47 726-772 23-70 (360)
196 3v5w_A G-protein coupled recep 95.6 0.0058 2E-07 67.7 3.7 34 738-771 189-223 (689)
197 1fmk_A C-SRC, P60-SRC, tyrosin 95.6 0.007 2.4E-07 65.0 4.3 36 738-773 184-219 (452)
198 3p86_A Serine/threonine-protei 95.6 0.0059 2E-07 61.8 3.5 35 737-772 36-70 (309)
199 2zmd_A Dual specificity protei 95.6 0.0061 2.1E-07 64.0 3.6 35 738-772 56-90 (390)
200 3gen_A Tyrosine-protein kinase 95.5 0.0056 1.9E-07 61.0 3.0 36 738-773 24-59 (283)
201 1vzo_A Ribosomal protein S6 ki 95.5 0.0075 2.6E-07 62.4 4.0 34 738-771 54-91 (355)
202 4gyi_A RIO2 kinase; protein ki 95.5 0.0089 3.1E-07 61.6 4.2 32 741-772 98-129 (397)
203 1j1b_A Glycogen synthase kinas 95.4 0.0074 2.5E-07 64.1 3.7 34 739-772 55-89 (420)
204 3an0_A Dual specificity mitoge 95.4 0.0085 2.9E-07 61.6 4.0 37 737-773 50-87 (340)
205 2x7f_A TRAF2 and NCK-interacti 95.4 0.0026 9E-08 65.0 0.1 45 728-772 14-59 (326)
206 3uqc_A Probable conserved tran 95.4 0.011 3.8E-07 59.0 4.6 35 739-773 32-67 (286)
207 3byv_A Rhoptry kinase; malaria 95.4 0.0063 2.2E-07 63.6 2.8 35 737-771 72-107 (377)
208 2w4o_A Calcium/calmodulin-depe 95.3 0.0098 3.4E-07 61.4 4.0 36 737-772 52-88 (349)
209 1k9a_A Carboxyl-terminal SRC k 95.3 0.0086 2.9E-07 64.3 3.5 35 738-773 193-227 (450)
210 3op5_A Serine/threonine-protei 95.2 0.0077 2.6E-07 62.6 2.9 37 736-772 33-75 (364)
211 3cek_A Dual specificity protei 95.2 0.0097 3.3E-07 60.3 3.5 45 728-772 18-62 (313)
212 2h8h_A Proto-oncogene tyrosine 95.2 0.0097 3.3E-07 65.4 3.7 36 738-773 267-302 (535)
213 2psq_A Fibroblast growth facto 95.2 0.0098 3.4E-07 61.9 3.6 36 738-773 81-124 (370)
214 2vx3_A Dual specificity tyrosi 95.2 0.0089 3.1E-07 62.6 3.2 37 736-772 52-89 (382)
215 2pvf_A Fibroblast growth facto 95.2 0.014 4.8E-07 59.7 4.6 36 738-773 35-78 (334)
216 3l9p_A Anaplastic lymphoma kin 95.1 0.012 4E-07 61.3 3.9 35 738-772 71-111 (367)
217 1zth_A RIO1 serine protein kin 95.1 0.011 3.8E-07 57.9 3.5 31 742-772 51-84 (258)
218 1mqb_A Ephrin type-A receptor 95.1 0.014 4.9E-07 59.7 4.4 46 728-773 25-84 (333)
219 3fhr_A MAP kinase-activated pr 95.1 0.012 4E-07 60.4 3.7 36 737-772 27-64 (336)
220 1u5q_A Serine/threonine protei 95.1 0.01 3.6E-07 61.1 3.3 35 738-772 54-89 (348)
221 3txo_A PKC-L, NPKC-ETA, protei 95.1 0.01 3.6E-07 61.2 3.3 35 737-771 22-57 (353)
222 3q60_A ROP5B; pseudokinase, tr 95.1 0.0094 3.2E-07 62.1 3.0 35 738-772 62-97 (371)
223 3dls_A PAS domain-containing s 95.0 0.01 3.5E-07 60.9 3.1 36 737-772 23-59 (335)
224 1luf_A Muscle-specific tyrosin 95.0 0.015 5.2E-07 59.7 4.4 38 736-773 45-88 (343)
225 3a99_A Proto-oncogene serine/t 95.0 0.01 3.5E-07 60.4 2.9 36 737-772 42-78 (320)
226 1opk_A P150, C-ABL, proto-onco 95.0 0.01 3.4E-07 64.6 3.0 36 738-773 220-256 (495)
227 3mdy_A Bone morphogenetic prot 94.9 0.0093 3.2E-07 61.1 2.5 34 737-771 36-69 (337)
228 3hko_A Calcium/calmodulin-depe 94.9 0.015 5.1E-07 59.8 4.0 39 733-771 21-60 (345)
229 2iwi_A Serine/threonine-protei 94.9 0.015 5.1E-07 58.8 3.8 38 735-772 28-66 (312)
230 2xir_A Vascular endothelial gr 94.9 0.011 3.7E-07 60.0 2.7 43 731-773 20-68 (316)
231 1p4o_A Insulin-like growth fac 94.8 0.0061 2.1E-07 62.1 0.8 41 732-772 19-65 (322)
232 4dc2_A Protein kinase C IOTA t 94.8 0.012 4.2E-07 61.6 3.1 35 738-772 52-87 (396)
233 3i6u_A CDS1, serine/threonine- 94.8 0.02 6.7E-07 60.8 4.7 36 736-771 133-169 (419)
234 2r5t_A Serine/threonine-protei 94.8 0.018 6E-07 60.0 4.2 34 738-771 38-72 (373)
235 1t46_A HOMO sapiens V-KIT hard 94.8 0.014 4.9E-07 59.0 3.4 36 738-773 23-64 (313)
236 2wqm_A Serine/threonine-protei 94.8 0.019 6.4E-07 58.1 4.2 35 738-772 32-67 (310)
237 3gbz_A Kinase, CMGC CDK; ssgci 94.8 0.017 5.7E-07 59.0 3.8 37 736-772 32-69 (329)
238 2fst_X Mitogen-activated prote 94.7 0.014 4.7E-07 60.7 3.1 35 738-772 29-64 (367)
239 3kvw_A DYRK2, dual specificity 94.7 0.016 5.4E-07 61.7 3.7 35 738-772 97-132 (429)
240 1cm8_A Phosphorylated MAP kina 94.7 0.018 6E-07 59.9 3.9 35 738-772 25-60 (367)
241 3p23_A Serine/threonine-protei 94.7 0.015 5.1E-07 61.9 3.4 35 737-772 23-58 (432)
242 1b6c_B TGF-B superfamily recep 94.7 0.012 4.2E-07 60.4 2.6 35 737-772 41-75 (342)
243 2dyl_A Dual specificity mitoge 94.7 0.016 5.6E-07 58.7 3.5 35 738-772 25-60 (318)
244 3nsz_A CK II alpha, casein kin 94.7 0.02 6.9E-07 58.4 4.2 35 738-772 36-71 (330)
245 1wak_A Serine/threonine-protei 94.6 0.015 5.2E-07 61.1 3.3 35 738-772 37-72 (397)
246 2i1m_A Macrophage colony-stimu 94.6 0.013 4.6E-07 59.8 2.8 37 737-773 45-87 (333)
247 1rdq_E PKA C-alpha, CAMP-depen 94.6 0.022 7.4E-07 58.7 4.2 34 738-771 41-75 (350)
248 3c4z_A Rhodopsin kinase; Ser/T 94.6 0.02 6.9E-07 62.5 4.1 34 738-771 185-219 (543)
249 2pml_X PFPK7, Ser/Thr protein 94.6 0.018 6.2E-07 59.2 3.6 33 738-771 31-63 (348)
250 3lxp_A Non-receptor tyrosine-p 94.5 0.021 7.1E-07 58.0 3.9 34 740-773 33-71 (318)
251 4exu_A Mitogen-activated prote 94.5 0.021 7.1E-07 59.5 3.8 35 738-772 42-77 (371)
252 3coi_A Mitogen-activated prote 94.5 0.02 6.8E-07 59.2 3.6 35 738-772 24-59 (353)
253 2ivs_A Proto-oncogene tyrosine 94.5 0.023 7.7E-07 57.5 4.0 36 738-773 23-64 (314)
254 4aaa_A Cyclin-dependent kinase 94.4 0.021 7.1E-07 58.4 3.7 35 738-772 25-60 (331)
255 3tt0_A Basic fibroblast growth 94.4 0.019 6.6E-07 60.0 3.4 36 738-773 69-112 (382)
256 2x4f_A Myosin light chain kina 94.4 0.02 6.7E-07 59.7 3.4 33 740-772 91-124 (373)
257 3eqc_A Dual specificity mitoge 94.4 0.028 9.4E-07 58.2 4.4 36 738-773 33-69 (360)
258 2acx_A G protein-coupled recep 94.3 0.021 7.1E-07 62.7 3.4 35 737-771 183-218 (576)
259 2jii_A Serine/threonine-protei 94.3 0.017 5.8E-07 59.6 2.6 35 738-772 42-85 (352)
260 2w1i_A JAK2; chromosomal rearr 94.3 0.024 8.4E-07 57.7 3.8 35 739-773 42-81 (326)
261 4ejn_A RAC-alpha serine/threon 94.3 0.02 7E-07 61.3 3.3 35 737-771 147-182 (446)
262 3ll6_A Cyclin G-associated kin 94.2 0.022 7.4E-07 58.3 3.3 34 738-771 28-62 (337)
263 2yfx_A Tyrosine-protein kinase 94.2 0.03 1E-06 57.1 4.3 35 738-772 30-70 (327)
264 1rjb_A FL cytokine receptor; k 94.2 0.021 7E-07 58.7 3.0 36 737-772 44-85 (344)
265 3qup_A Tyrosine-protein kinase 94.2 0.02 6.9E-07 58.2 2.9 36 737-772 22-61 (323)
266 3lxl_A Tyrosine-protein kinase 94.2 0.021 7.3E-07 58.2 3.1 35 739-773 24-63 (327)
267 2buj_A Serine/threonine-protei 94.1 0.024 8.3E-07 57.4 3.4 34 738-771 29-63 (317)
268 3uto_A Twitchin; kinase, muscl 94.1 0.023 7.8E-07 62.7 3.4 35 738-772 157-192 (573)
269 3brb_A Proto-oncogene tyrosine 94.1 0.023 7.9E-07 57.5 3.1 37 736-772 32-72 (313)
270 3com_A Serine/threonine-protei 94.1 0.028 9.4E-07 56.9 3.6 36 737-772 28-64 (314)
271 3rp9_A Mitogen-activated prote 94.1 0.023 7.8E-07 61.1 3.1 35 738-772 53-88 (458)
272 4e7w_A Glycogen synthase kinas 94.0 0.021 7.2E-07 59.9 2.8 34 739-772 41-74 (394)
273 2bdw_A Hypothetical protein K1 94.0 0.024 8.3E-07 58.7 3.1 36 737-772 28-64 (362)
274 3pfq_A PKC-B, PKC-beta, protei 94.0 0.025 8.7E-07 63.8 3.5 35 737-771 340-375 (674)
275 3n9x_A Phosphotransferase; mal 94.0 0.025 8.4E-07 60.3 3.1 35 738-772 26-61 (432)
276 3lm5_A Serine/threonine-protei 93.9 0.031 1.1E-06 57.0 3.7 29 744-772 35-64 (327)
277 3c0i_A Peripheral plasma membr 93.9 0.026 9E-07 58.2 3.1 33 739-771 25-58 (351)
278 3qyz_A Mitogen-activated prote 93.9 0.028 9.7E-07 58.3 3.4 36 737-772 26-62 (364)
279 2h34_A Serine/threonine-protei 93.9 0.034 1.2E-06 56.1 3.9 35 738-772 34-69 (309)
280 2ozo_A Tyrosine-protein kinase 93.8 0.031 1.1E-06 62.4 3.8 29 745-773 343-374 (613)
281 3ttj_A Mitogen-activated prote 93.8 0.033 1.1E-06 59.9 3.6 35 738-772 62-97 (464)
282 2xrw_A Mitogen-activated prote 93.6 0.034 1.2E-06 57.8 3.4 35 738-772 25-60 (371)
283 4fl3_A Tyrosine-protein kinase 93.6 0.029 1E-06 62.8 3.0 29 744-772 375-406 (635)
284 3c1x_A Hepatocyte growth facto 93.5 0.043 1.5E-06 57.0 4.0 33 740-772 91-127 (373)
285 1nxk_A MAP kinase-activated pr 93.5 0.039 1.3E-06 58.0 3.5 29 744-772 68-97 (400)
286 2v62_A Serine/threonine-protei 93.4 0.027 9.4E-07 57.9 2.3 35 738-772 37-75 (345)
287 1kob_A Twitchin; kinase, intra 93.4 0.044 1.5E-06 57.3 3.8 35 738-772 51-86 (387)
288 1t4h_A Serine/threonine-protei 93.4 0.042 1.4E-06 54.7 3.5 33 740-772 28-61 (290)
289 3lb7_A RAF proto-oncogene seri 93.3 0.049 1.7E-06 54.8 3.8 33 738-772 36-68 (307)
290 3f66_A Hepatocyte growth facto 93.0 0.05 1.7E-06 54.4 3.3 34 739-772 26-63 (298)
291 3q5i_A Protein kinase; CDPK, m 92.9 0.054 1.9E-06 59.0 3.7 36 737-772 35-71 (504)
292 3gni_B Strad alpha; kinase fol 92.8 0.052 1.8E-06 56.8 3.3 35 738-772 25-62 (389)
293 3nyv_A Calmodulin-domain prote 92.8 0.048 1.7E-06 59.0 3.1 33 739-771 27-60 (484)
294 2pzi_A Probable serine/threoni 92.7 0.048 1.6E-06 61.9 3.1 35 738-772 80-116 (681)
295 2owb_A Serine/threonine-protei 92.6 0.057 2E-06 55.2 3.2 34 738-771 41-75 (335)
296 3lij_A Calcium/calmodulin depe 92.1 0.072 2.5E-06 57.8 3.4 34 739-772 38-72 (494)
297 2y4i_B KSR2, HKSR2, kinase sup 91.6 0.1 3.5E-06 52.7 3.7 33 738-772 33-65 (319)
298 2j0j_A Focal adhesion kinase 1 91.6 0.13 4.3E-06 57.9 4.7 35 738-772 390-428 (656)
299 1fvr_A Tyrosine-protein kinase 91.6 0.084 2.9E-06 53.6 3.0 35 738-772 25-62 (327)
300 3en9_A Glycoprotease, O-sialog 88.5 0.21 7.1E-06 54.7 3.1 29 742-771 340-368 (540)
301 3og7_A AKAP9-BRAF fusion prote 83.7 0.5 1.7E-05 46.8 2.7 22 739-760 25-46 (289)
302 2lz0_A Uncharacterized protein 71.3 8.6 0.00029 30.6 6.0 45 95-140 8-52 (100)
303 2lz0_A Uncharacterized protein 67.3 13 0.00046 29.4 6.4 38 173-211 14-51 (100)
304 2ks1_B Epidermal growth factor 36.9 22 0.00075 23.1 2.3 21 685-705 21-41 (44)
305 2l2t_A Receptor tyrosine-prote 35.2 30 0.001 22.5 2.7 12 690-701 30-41 (44)
306 2olc_A MTR kinase, methylthior 25.2 42 0.0014 34.4 3.5 28 744-771 36-64 (397)
307 3ox7_P MH027; urokinase-type p 22.1 29 0.00098 17.9 0.7 11 43-53 4-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-86 Score=774.50 Aligned_cols=644 Identities=32% Similarity=0.502 Sum_probs=547.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccc---cCc-
Q 043943 1 FSLPVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGT---LDE- 76 (775)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~---~~~- 76 (775)
|.++++++.++|++||++||+++. ||. .+.+|+ .+.+||.|.||+|+ .++|+.++|++..+.|. ++.
T Consensus 2 ~~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~------~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~ 72 (768)
T 3rgz_A 2 FQASPSQSLYREIHQLISFKDVLP-DKN-LLPDWS------SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS 72 (768)
T ss_dssp ------CCHHHHHHHHHHHHTTCS-CTT-SSTTCC------TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH
T ss_pred CcCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCC------CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChh
Confidence 456777778999999999999998 476 889997 46789999999998 79999999999999886 441
Q ss_pred ---------------------cccCCCCCCCEEECCCCCCcccCcc--cccCCCCCCEEeCcCCCCCCCCchhc-cCCCC
Q 043943 77 ---------------------FSFSSFPDLLFLNLFNNELFGIIPP--QISQLFKLQYLDLSANKLSGKIPPEI-GQLSF 132 (775)
Q Consensus 77 ---------------------~~~~~l~~L~~L~ls~~~~~~~~~~--~~~~l~~L~~L~ls~n~~~~~~p~~~-~~l~~ 132 (775)
..+.++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 3566777788888888887777776 77778888888888887776666654 67778
Q ss_pred CCEEECCCccccccCccc---ccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEE
Q 043943 133 LSELSLYSNCLNGSIPQS---LGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLH 209 (775)
Q Consensus 133 L~~L~L~~n~~~~~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 209 (775)
|++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+..|. ++++++|++|+
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence 888888888777766665 67777888888888777765543 6788888888888888776766 88888888888
Q ss_pred cccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCC-CCCCEEEcccCccc
Q 043943 210 LFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNL-RSLSNLDLSINRLN 288 (775)
Q Consensus 210 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~ 288 (775)
+++|.+++..|..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.++
T Consensus 230 Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~ 307 (768)
T 3rgz_A 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307 (768)
T ss_dssp CCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEE
T ss_pred CcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCC
Confidence 8888888888888888888888888888888777664 77888888888888888888877664 88888888888888
Q ss_pred ccCCccCCCCCCCCeeeccCccccCCCCcc-CCCCCCCCeeeCcCCcCcCccCCcCCCCC-cCcEEEccCCcCCCCchhh
Q 043943 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKE-IGNLKCLFDLELSMNNLTGVIPSSIGNLR-NLRLLYLYRNELSGSIPQA 366 (775)
Q Consensus 289 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~ 366 (775)
+..|..+..+++|++|++++|.+++.+|.. +..+++|++|++++|++.+.+|..+..++ +|+.|++++|.+.+.+|..
T Consensus 308 ~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 888888888888888888888888777765 78888888888888888888888777776 8888888888888777777
Q ss_pred ccC--CCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCC
Q 043943 367 IGN--LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444 (775)
Q Consensus 367 ~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 444 (775)
+.. +++|+.|++++|.+.+.+|..+.++++|+.|++++|.+.+..|..+ +.+++|+.|++++|.+.+.+|..+..++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 666 7789999999999988888889999999999999999988888776 7889999999999999988999999999
Q ss_pred CCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECC
Q 043943 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLS 524 (775)
Q Consensus 445 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls 524 (775)
+|++|++++|++++.+|..+..+++|++|++++|++.+.+|.++..+++|++|+|++|++++.+|..+..+++|+.|+++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcc---------------------------------------------------------------------
Q 043943 525 ENRLSNAIPGS--------------------------------------------------------------------- 535 (775)
Q Consensus 525 ~n~l~~~~~~~--------------------------------------------------------------------- 535 (775)
+|+++|.+|..
T Consensus 547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~ 626 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626 (768)
T ss_dssp SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence 99888766643
Q ss_pred -ccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCC
Q 043943 536 -LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHG 614 (775)
Q Consensus 536 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 614 (775)
+..+++|+.|||++|+++|.+|..+..+. +|+.|+|++|+++|.+|..|+.+++|+.|||++|+++|.+|..+..+++
T Consensus 627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp SCSSSBCCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhccccccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 34467899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCCCCCCCCCCCCc
Q 043943 615 LSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGDDKGLSSCKAF 662 (775)
Q Consensus 615 L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~~~~~~~~c~~~ 662 (775)
|++||+++|+++|.+|...+|.+++..+|.||+.+||.+ ...|...
T Consensus 706 L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~--l~~C~~~ 751 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP--LPRCDPS 751 (768)
T ss_dssp CSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT--SCCCCSC
T ss_pred CCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC--CcCCCCC
Confidence 999999999999999999999999999999999999954 2377644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6e-69 Score=626.74 Aligned_cols=562 Identities=33% Similarity=0.475 Sum_probs=518.0
Q ss_pred CCCEEEEEcCCCCCccccCcc--ccCCCCCCCEEECCCCCCcccCcccc-cCCCCCCEEeCcCCCCCCCCchh---ccCC
Q 043943 57 DERVVGINLTTTSLNGTLDEF--SFSSFPDLLFLNLFNNELFGIIPPQI-SQLFKLQYLDLSANKLSGKIPPE---IGQL 130 (775)
Q Consensus 57 ~~~v~~l~l~~~~~~~~~~~~--~~~~l~~L~~L~ls~~~~~~~~~~~~-~~l~~L~~L~ls~n~~~~~~p~~---~~~l 130 (775)
-.+++.++|+++.+.|.++ . .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..|.. +.++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 3578999999999999887 5 78999999999999999998888766 89999999999999999888877 8899
Q ss_pred CCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEc
Q 043943 131 SFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHL 210 (775)
Q Consensus 131 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 210 (775)
++|++|++++|.+.+..| +.++++|++|++++|.+.+.+|. +.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence 999999999999987665 38999999999999999988887 999999999999999999999999999999999999
Q ss_pred ccccCccccCccCCCCCCCCEEEcccccccccCCccccCC-CCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccc
Q 043943 211 FNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNV-RNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG 289 (775)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 289 (775)
++|.+.+..|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|.+++.+|..|..+++|++|++++|.+++
T Consensus 255 s~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 255 SSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 999999877765 89999999999999999999988775 999999999999999999999999999999999999998
Q ss_pred cCCcc-CCCCCCCCeeeccCccccCCCCccCCCCC-CCCeeeCcCCcCcCccCCcCCC--CCcCcEEEccCCcCCCCchh
Q 043943 290 VIPSS-IGNSNNLSILYLYSNQLSGSIPKEIGNLK-CLFDLELSMNNLTGVIPSSIGN--LRNLRLLYLYRNELSGSIPQ 365 (775)
Q Consensus 290 ~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~ 365 (775)
.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|++.+.+|..+.. +++|++|++++|.+++.+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 88865 89999999999999999999999888887 9999999999999988887776 88999999999999999999
Q ss_pred hccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCC
Q 043943 366 AIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQ 445 (775)
Q Consensus 366 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 445 (775)
.+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|++.+.+|..+..+++
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 99999999999999999999999999999999999999999999888877 78999999999999999999999999999
Q ss_pred CCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCc-------------
Q 043943 446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI------------- 512 (775)
Q Consensus 446 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~------------- 512 (775)
|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+..+++|++|++++|+++|.+|..+
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999987777543
Q ss_pred ---------------------------------------------------------cCCCCCCEEECCCCcccccCCcc
Q 043943 513 ---------------------------------------------------------GTLTELELLDLSENRLSNAIPGS 535 (775)
Q Consensus 513 ---------------------------------------------------------~~l~~L~~L~ls~n~l~~~~~~~ 535 (775)
..+++|+.||+++|+++|.+|..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 33578999999999999999999
Q ss_pred ccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCC
Q 043943 536 LGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGL 615 (775)
Q Consensus 536 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L 615 (775)
++.++.|+.|+|++|+++|.+|..+..+. +|+.|||++|+++|.+|..++.+++|++|++++|+++|.+|.. ..+.++
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~ 729 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETF 729 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGS
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccC
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999975 233455
Q ss_pred CEEeCCCCcccc
Q 043943 616 SSIDISYNRLQG 627 (775)
Q Consensus 616 ~~l~ls~n~l~~ 627 (775)
....+.+|+--|
T Consensus 730 ~~~~~~gN~~Lc 741 (768)
T 3rgz_A 730 PPAKFLNNPGLC 741 (768)
T ss_dssp CGGGGCSCTEEE
T ss_pred CHHHhcCCchhc
Confidence 566778887443
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-61 Score=557.47 Aligned_cols=568 Identities=24% Similarity=0.242 Sum_probs=264.3
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++++|.++...+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 34555555555555444444555555555555555555444545555555555555555554333334555555555555
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCC--CCCCCCEEEccccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLG--KLKCLSNLNMSMNHLS 240 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~ 240 (775)
++|.+.+..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 55555544444555555555555555555544444455555555555555555444433322 3345555555555555
Q ss_pred ccCCccccCCCCCcEEEcccccCCCCCCccc---cCCCCCCEEEcccCcccccCCccCCCCCC--CCeeeccCccccCCC
Q 043943 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEI---GNLRSLSNLDLSINRLNGVIPSSIGNSNN--LSILYLYSNQLSGSI 315 (775)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~ 315 (775)
+..|..+..+++|+.|++.++.+.+.....+ ...++|++|++++|.+++..|.++..++. |++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 4444445555555555544444322111100 01244455555555544444444444432 555555555544444
Q ss_pred CccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC-----Cch----hhccCCCCCcEEEeccceeccc
Q 043943 316 PKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG-----SIP----QAIGNLVELVSLLLGFNYFRGP 386 (775)
Q Consensus 316 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~~~ 386 (775)
+..+..+++|++|++++|++.+..|..+..+++|+.|++++|...+ .+| ..+..+++|+.|++++|.+.+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 4444445555555555555544444444445555555554433221 111 1344444555555555555444
Q ss_pred CCccCcCCCcccceecccccccccc-chhhhc--cCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCC-c
Q 043943 387 IPKNFKNLTNLVRVRMNQNNLSGNI-SEAFVG--TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIP-P 462 (775)
Q Consensus 387 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 462 (775)
.+..+.++++|+.|++++|.+.... +...+. ..++|+.|++++|++.+..+..|..+++|+.|++++|.+++.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 4444445555555555444422111 111001 11345555555555554444445555555555555555444333 3
Q ss_pred cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCc--ccCCcCccCCCCCCEEECCCCcccccCCccccCcC
Q 043943 463 EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF--GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLL 540 (775)
Q Consensus 463 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~ 540 (775)
.|..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..+..|.+++
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 4445555555555555544444444444555555555555443 23444444555555555555555544444445555
Q ss_pred CCCEEEccCCcCccCCc--------hhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCC
Q 043943 541 KVHYLNLSNNEFSHKIP--------TQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDM 612 (775)
Q Consensus 541 ~L~~L~Ls~n~l~~~~~--------~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l 612 (775)
+|++|+|++|++++..+ ..+..++ +|+.|++++|+++...+..|.++++|+.|++++|++++..+..|..+
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 55555555554443211 1133333 45555555555543222334455555555555555554444444445
Q ss_pred CCCCEEeCCCCcccccCCCCC--cCCCCCccccCCCcCCCC
Q 043943 613 HGLSSIDISYNRLQGPVPFSK--AFRDAPAEALQGNRGLCG 651 (775)
Q Consensus 613 ~~L~~l~ls~n~l~~~~p~~~--~~~~~~~~~~~gn~~lc~ 651 (775)
++|+.|++++|++++..|..- .+..+....+.|||..|.
T Consensus 584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 555555555555444333110 123333344445554443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.6e-60 Score=549.85 Aligned_cols=572 Identities=24% Similarity=0.252 Sum_probs=508.0
Q ss_pred CCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEE
Q 043943 57 DERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136 (775)
Q Consensus 57 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L 136 (775)
..+++.++++++.+.+..+ ..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|+++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 3589999999999987544 779999999999999999999999999999999999999999996666679999999999
Q ss_pred ECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccC--CCCCccEEEccccc
Q 043943 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLG--NLTNLVTLHLFNNS 214 (775)
Q Consensus 137 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~ 214 (775)
++++|.+.+..|..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999988778999999999999999999999999999999999999999999877766543 56899999999999
Q ss_pred CccccCccCCCCCCCCEEEcccccccccCCcccc---CCCCCcEEEcccccCCCCCCccccCCCC--CCEEEcccCcccc
Q 043943 215 LSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG---NVRNLRSLFLYSNELSGSIPKEIGNLRS--LSNLDLSINRLNG 289 (775)
Q Consensus 215 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~ 289 (775)
+++..+..+..+++|+.|++.++.+.......+. ..++|+.|++++|.+++..|..|..++. |++|++++|.+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 9999999999999999999999887543222211 3478999999999999988888888754 9999999999999
Q ss_pred cCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCc-----cC----CcCCCCCcCcEEEccCCcCC
Q 043943 290 VIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGV-----IP----SSIGNLRNLRLLYLYRNELS 360 (775)
Q Consensus 290 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~----~~~~~~~~L~~L~l~~n~l~ 360 (775)
..+..|..+++|++|++++|.+++..+..+..+++|++|++++|...+. +| ..+..+++|++|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 9889999999999999999999999999999999999999998765431 22 36788999999999999999
Q ss_pred CCchhhccCCCCCcEEEeccceeccc--CCccCcCC--CcccceeccccccccccchhhhccCCCCcEEeCCCccceeec
Q 043943 361 GSIPQAIGNLVELVSLLLGFNYFRGP--IPKNFKNL--TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI 436 (775)
Q Consensus 361 ~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 436 (775)
+..+..+.++++|+.|++++|.+... ....+..+ ++|+.|++++|.+.+..+..+ ..+++|+.|++++|.+.+.+
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEEC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCcccc
Confidence 98889999999999999999975432 22334333 589999999999998887766 78999999999999998876
Q ss_pred C-cCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCcc--CcCChhhhcCCCCCEEEcCCCcCcccCCcCcc
Q 043943 437 S-SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG--GKIPMELGRLSSLNKLILNKNQLFGSLPPEIG 513 (775)
Q Consensus 437 ~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 513 (775)
+ ..|..+++|++|++++|++.+..+..|..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..+.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 6 68999999999999999999888899999999999999999986 56788999999999999999999988888899
Q ss_pred CCCCCCEEECCCCcccccCC--------ccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943 514 TLTELELLDLSENRLSNAIP--------GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI 585 (775)
Q Consensus 514 ~l~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l 585 (775)
.+++|++|++++|.+++..+ ..+..+++|+.|+|++|+++...+..+..++ +|+.|++++|++++..+..|
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc-CcceeECCCCCCCcCCHhHh
Confidence 99999999999999987532 2478899999999999999955455688888 99999999999998778888
Q ss_pred cCCCCCcEEeCCCCcCcccCCcccc-CCCCCCEEeCCCCcccccCCC
Q 043943 586 CNMESLVKLNLSYNQLSGFIPNCFE-DMHGLSSIDISYNRLQGPVPF 631 (775)
Q Consensus 586 ~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~l~ls~n~l~~~~p~ 631 (775)
..+++|+.|++++|++++..|..+. .+++|+.+++++|++.|.|+.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9999999999999999999988887 789999999999999999985
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-57 Score=515.69 Aligned_cols=526 Identities=19% Similarity=0.197 Sum_probs=397.3
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 47899999999999888889999999999999999999888999999999999999999999888899999999999999
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCC--EEEccccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS--NLNMSMNHLS 240 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~l~~n~~~ 240 (775)
++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999988788899999999999999998875444455589999999999999988888888899998 8899999998
Q ss_pred ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
+..|..+. ..+|+.|++++|. .++..+..+.+++...+....+.. +....+....+.+ +.
T Consensus 193 ~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~-----------~~~~~i~~~~~~~-----l~ 252 (606)
T 3t6q_A 193 GIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED-----------MDDEDISPAVFEG-----LC 252 (606)
T ss_dssp EECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----------SCCCCCCGGGGGG-----GG
T ss_pred ccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhcc-----------ccccccChhHhch-----hh
Confidence 77776654 4688999988875 234444455554444433222211 1111111111110 00
Q ss_pred CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV 400 (775)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 400 (775)
. .+|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|
T Consensus 253 ~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 E-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp G-SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred c-CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 0 13444444444444444444444455555555555444 344444445555555555555554444455555555555
Q ss_pred eccccccccccchhhhccCCCCcEEeCCCccceeec--CcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCC
Q 043943 401 RMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI--SSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN 478 (775)
Q Consensus 401 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n 478 (775)
++++|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 555555554454444466777777777777777665 667788888888888888888777888888888888888888
Q ss_pred CccCcCCh-hhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCccccc---CCccccCcCCCCEEEccCCcCcc
Q 043943 479 HIGGKIPM-ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNA---IPGSLGNLLKVHYLNLSNNEFSH 554 (775)
Q Consensus 479 ~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~ 554 (775)
++.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|++++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 88776554 377888888888888888888888888888899999999888762 33568888999999999999998
Q ss_pred CCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC
Q 043943 555 KIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632 (775)
Q Consensus 555 ~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 632 (775)
..|..+..++ +|+.|++++|++++..|..+..++.| .|++++|++++.+|..+..+++|+.+++++|++.|.++..
T Consensus 491 ~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 491 IDQHAFTSLK-MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp ECTTTTTTCT-TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred cChhhhcccc-CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 8888888888 99999999999999999999999999 9999999999999999999999999999999999988743
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.2e-56 Score=506.98 Aligned_cols=517 Identities=21% Similarity=0.212 Sum_probs=383.7
Q ss_pred CCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEE
Q 043943 58 ERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELS 137 (775)
Q Consensus 58 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~ 137 (775)
..++.++++++.+.+..+ ..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 579999999999987655 7899999999999999999999999999999999999999999988899999999999999
Q ss_pred CCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCcc--EEEcccccC
Q 043943 138 LYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLV--TLHLFNNSL 215 (775)
Q Consensus 138 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~--~L~l~~n~l 215 (775)
+++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999987788899999999999999999986655666699999999999999988888899999999 899999999
Q ss_pred ccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCC-----CCCccccCCC--CCCEEEcccCccc
Q 043943 216 SGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG-----SIPKEIGNLR--SLSNLDLSINRLN 288 (775)
Q Consensus 216 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~--~L~~L~l~~n~~~ 288 (775)
.+..+..+.. .+|++|++++|.. .+..+..+.+++...+....+.+ ..+..+..+. +|++|++++|.++
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 9888777655 6899999999862 33344455555444443322221 1111122221 4555555555555
Q ss_pred ccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhcc
Q 043943 289 GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIG 368 (775)
Q Consensus 289 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (775)
+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.++.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--- 343 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT--- 343 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS---
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch---
Confidence 544444555555555555555554 3444445555555555555555544444444455555555555544433322
Q ss_pred CCCCCcEEEeccceecccCCccCcCCCcccceecccccccccc--chhhhccCCCCcEEeCCCccceeecCcCcCCCCCC
Q 043943 369 NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI--SEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQL 446 (775)
Q Consensus 369 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 446 (775)
..+..+++|+.|++++|.+.+.. +..+ ..+++|++|++++|.+.+..+..+..+++|
T Consensus 344 --------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 344 --------------------GCLENLENLRELDLSHDDIETSDCCNLQL-RNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp --------------------STTTTCTTCCEEECCSSCCCEEEESTTTT-TTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred --------------------hhhhccCcCCEEECCCCccccccCcchhc-ccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 22455555555555555555443 2222 567778888888888777777778888888
Q ss_pred CEEEcccCcccccCCc-cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCccc---CCcCccCCCCCCEEE
Q 043943 447 GTLDFSVNNITGSIPP-EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGS---LPPEIGTLTELELLD 522 (775)
Q Consensus 447 ~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~---~~~~~~~l~~L~~L~ 522 (775)
++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+. .+..+..+++|+.|+
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 8888888888766554 477888888888888888877777788888888888888888752 234577888888888
Q ss_pred CCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCc
Q 043943 523 LSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS 602 (775)
Q Consensus 523 ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 602 (775)
+++|.+++..|..+..+++|++|+|++|++++..|..+..+. .| .|++++|++++..|..+..+++|+.|++++|++.
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc-cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 888888888888888888888888888888888888888877 78 8888888888888888888888888888888887
Q ss_pred ccCC
Q 043943 603 GFIP 606 (775)
Q Consensus 603 ~~~p 606 (775)
+..+
T Consensus 561 c~c~ 564 (606)
T 3t6q_A 561 CTCS 564 (606)
T ss_dssp CSGG
T ss_pred ccCC
Confidence 6543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-55 Score=500.50 Aligned_cols=522 Identities=22% Similarity=0.223 Sum_probs=409.1
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 78999999999999888889999999999999999999888888999999999999999999888999999999999999
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCCC----EEEcccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS----NLNMSMN 237 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n 237 (775)
++|.+.+..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|+ +|++++|
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9999998888889999999999999999875 5688899999999999999999988888887776665 7999999
Q ss_pred cccccCCccccCCCCCcEEEcccccCC-CCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCC
Q 043943 238 HLSGAIPSSIGNVRNLRSLFLYSNELS-GSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316 (775)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 316 (775)
.+.+..+..+... +|+.|++++|.++ +..|..+.++++|+.+++..+.+.... .+..+. ...+
T Consensus 192 ~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~~-------~~~~ 255 (606)
T 3vq2_A 192 PIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIFE-------PSIM 255 (606)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCCC-------GGGG
T ss_pred CcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------cccccC-------hHHh
Confidence 9886666555544 8999999998876 356677888888888887655443210 010000 0000
Q ss_pred ccCCCCCCCCeeeC-cCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCC
Q 043943 317 KEIGNLKCLFDLEL-SMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395 (775)
Q Consensus 317 ~~~~~l~~L~~L~l-~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 395 (775)
..+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +| .+..+++|+.|++++|.+ +.+| .+ .++
T Consensus 256 ~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~ 328 (606)
T 3vq2_A 256 EGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP 328 (606)
T ss_dssp TTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCS
T ss_pred hhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCC
Confidence 111111 2344444 44455555554 5556666666666666542 33 555566666666666666 4445 33 666
Q ss_pred cccceeccccccccccchhhhccCCCCcEEeCCCccceee--cCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 043943 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQ--ISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVL 473 (775)
Q Consensus 396 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 473 (775)
+|+.|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|++|
T Consensus 329 ~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404 (606)
T ss_dssp SCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred ccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence 6677777666444333 125677888888888888766 36777888888888888888875 55778888899999
Q ss_pred EccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccc-cCCccccCcCCCCEEEccCCc
Q 043943 474 NLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNE 551 (775)
Q Consensus 474 ~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~ 551 (775)
++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|+|++|+
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 999998887777 678888999999999999988888888899999999999999987 478888999999999999999
Q ss_pred CccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCC-CCCEEeCCCCcccccCC
Q 043943 552 FSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMH-GLSSIDISYNRLQGPVP 630 (775)
Q Consensus 552 l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~l~ls~n~l~~~~p 630 (775)
+++..|..+..++ +|+.|++++|++++.+|..|+.+++|+.|++++|+++. +|..+..++ +|+.+++++|++.|.++
T Consensus 485 l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 485 LEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEECTTTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCccChhhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCcccCCc
Confidence 9988888888888 99999999999998889999999999999999999984 666688886 59999999999999998
Q ss_pred CCC
Q 043943 631 FSK 633 (775)
Q Consensus 631 ~~~ 633 (775)
..+
T Consensus 563 ~~~ 565 (606)
T 3vq2_A 563 HQK 565 (606)
T ss_dssp THH
T ss_pred cHH
Confidence 653
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.8e-55 Score=512.29 Aligned_cols=522 Identities=24% Similarity=0.232 Sum_probs=383.4
Q ss_pred CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCC-chhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943 81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKI-PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL 159 (775)
Q Consensus 81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 159 (775)
-.+++++|+|++|.+++..+..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999999888889999999999999999655454 778999999999999999999888999999999999
Q ss_pred EEcccCcCcccCCcc--cCCCCCCCEEeccCCcCcccCC-cccCCCCCccEEEcccccCccccCccCCCC--CCCCEEEc
Q 043943 160 LSLYNNSLSGYIPPV--IGNLISLSTLDLSLNQLIGSVP-FFLGNLTNLVTLHLFNNSLSGFIPSTLGKL--KCLSNLNM 234 (775)
Q Consensus 160 L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l 234 (775)
|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999998766554 8889999999999998876654 468889999999999999888888888777 88999999
Q ss_pred ccccccccCCccccCCCC------CcEEEcccccCCCCCCccccC---CCCCCEEEcccCcccccCCccCCCCCCCCeee
Q 043943 235 SMNHLSGAIPSSIGNVRN------LRSLFLYSNELSGSIPKEIGN---LRSLSNLDLSINRLNGVIPSSIGNSNNLSILY 305 (775)
Q Consensus 235 ~~n~~~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 305 (775)
++|.+.+..|..+..+.+ |+.|++++|.+++..+..+.. ..+++.|.++.+.....
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~--------------- 246 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG--------------- 246 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------
Confidence 999888877777766665 888888888887777766553 25677777764332211
Q ss_pred ccCccccCCCCccCCCC--CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEecccee
Q 043943 306 LYSNQLSGSIPKEIGNL--KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYF 383 (775)
Q Consensus 306 l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 383 (775)
+..+.+.+.....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 01111221222223332 4566666666666665566666666666666666666655555666666666666666666
Q ss_pred cccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCcc
Q 043943 384 RGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE 463 (775)
Q Consensus 384 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 463 (775)
.+..+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+++ +..+++|+.|++++|+++ .+|..
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~ 399 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI 399 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc
Confidence 66556666666666666666666655444433 566777777777776653 223677777777777776 33432
Q ss_pred ccCCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCc-CccCCCCCCEEECCCCccc-----ccCCccc
Q 043943 464 IGNSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPP-EIGTLTELELLDLSENRLS-----NAIPGSL 536 (775)
Q Consensus 464 ~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~ls~n~l~-----~~~~~~~ 536 (775)
..+++.|++++|++.+... ..+..+++|+.|+|++|++++..+. .+..+++|+.|++++|.+. +..+..|
T Consensus 400 ---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 400 ---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp ---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred ---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 4567888888888775432 2345778888888888888754432 3455778888888888876 3344567
Q ss_pred cCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCC
Q 043943 537 GNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLS 616 (775)
Q Consensus 537 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 616 (775)
..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++..|..+. ++|+.|++++|++++.+|..|. +|+
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~ 550 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLS 550 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCC-SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCC
T ss_pred cCcccccEEECCCCcccccChhHccchh-hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcC
Confidence 7888888888888888887777777777 888888888888877776665 7899999999999999887764 788
Q ss_pred EEeCCCCcccccCCCCC
Q 043943 617 SIDISYNRLQGPVPFSK 633 (775)
Q Consensus 617 ~l~ls~n~l~~~~p~~~ 633 (775)
.+++++|++.|.|+..+
T Consensus 551 ~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 551 VLDITHNKFICECELST 567 (844)
T ss_dssp EEEEEEECCCCSSSCCS
T ss_pred EEEecCCCcccccccHH
Confidence 99999999999988643
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.4e-54 Score=491.08 Aligned_cols=520 Identities=23% Similarity=0.237 Sum_probs=414.5
Q ss_pred CCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEE
Q 043943 57 DERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSEL 136 (775)
Q Consensus 57 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L 136 (775)
..+++.++++++.+.+..+ ..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 3579999999999987655 789999999999999999999889999999999999999999998889999999999999
Q ss_pred ECCCccccccCcccccCCCCCCEEEcccCcCcc-cCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCcc----EEEcc
Q 043943 137 SLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSG-YIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLV----TLHLF 211 (775)
Q Consensus 137 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~l~ 211 (775)
++++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+.+|+ +|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 999999998777889999999999999999987 5699999999999999999999988888787766654 89999
Q ss_pred cccCccccCccCCCCCCCCEEEccccccc-ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccccc
Q 043943 212 NNSLSGFIPSTLGKLKCLSNLNMSMNHLS-GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290 (775)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 290 (775)
+|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+.. .+..+ ...
T Consensus 190 ~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~-------~~~ 253 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIF-------EPS 253 (606)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCC-------CGG
T ss_pred CCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC--------ccccc-------ChH
Confidence 999998877777665 9999999999886 466778899999999998766544211 11100 000
Q ss_pred CCccCCCCCCCCeeec-cCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccC
Q 043943 291 IPSSIGNSNNLSILYL-YSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGN 369 (775)
Q Consensus 291 ~~~~l~~l~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (775)
.+..+..+ .++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .
T Consensus 254 ~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~ 326 (606)
T 3vq2_A 254 IMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-D 326 (606)
T ss_dssp GGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-C
T ss_pred Hhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-C
Confidence 11111111 2334444 34444444443 5555555555555555543 23 455555666666666655 3444 23 5
Q ss_pred CCCCcEEEeccceecccCCccCcCCCcccceecccccccccc--chhhhccCCCCcEEeCCCccceeecCcCcCCCCCCC
Q 043943 370 LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI--SEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447 (775)
Q Consensus 370 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 447 (775)
+++|+.|++++|...+.. .+..+++|+.|++++|.+.+.. +..+ ..+++|++|++++|.+.+ ++..+..+++|+
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhh-ccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 566666666665433322 4556677777777777766553 4444 778899999999999876 457889999999
Q ss_pred EEEcccCcccccCC-ccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcc-cCCcCccCCCCCCEEECCC
Q 043943 448 TLDFSVNNITGSIP-PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFG-SLPPEIGTLTELELLDLSE 525 (775)
Q Consensus 448 ~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~ls~ 525 (775)
+|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 99999999998877 688999999999999999999899999999999999999999987 4788899999999999999
Q ss_pred CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCC-CCcEEeCCCCcCccc
Q 043943 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNME-SLVKLNLSYNQLSGF 604 (775)
Q Consensus 526 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~ls~n~l~~~ 604 (775)
|.+++..|..+..+++|++|+|++|++++.+|..+..++ +|+.|++++|+++ .+|..+..++ +|+.|++++|++...
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 999999999999999999999999999998899999988 9999999999999 6777798887 699999999999865
Q ss_pred CC
Q 043943 605 IP 606 (775)
Q Consensus 605 ~p 606 (775)
.+
T Consensus 561 c~ 562 (606)
T 3vq2_A 561 CE 562 (606)
T ss_dssp ST
T ss_pred Cc
Confidence 44
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-54 Score=495.02 Aligned_cols=503 Identities=18% Similarity=0.263 Sum_probs=316.9
Q ss_pred CCCcHHHHHHHHHHHhhcCcCCC-------CcCCCCCCCCCCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCCccccC
Q 043943 6 SSDSTEEARALLKWKTSLQIHSR-------SLLPSWTLSPVNATKKNLCAW---SGIYCNHDERVVGINLTTTSLNGTLD 75 (775)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~w~~~~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~~~~~~~ 75 (775)
.+....|++||.++++++..++- ....+|. .+.+||.| .||+|+..++|+.|+|+++++.|.+|
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~------~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN------FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC------CSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC------CCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCC
Confidence 34446799999999999865211 1223565 56899999 99999888999999999999999999
Q ss_pred ccccCCCCCCCEEECCCCCC------cc------cCcccccCCCCCCEEeCcCCCCCCCCchhccC-CCCCCEEECCCcc
Q 043943 76 EFSFSSFPDLLFLNLFNNEL------FG------IIPPQISQLFKLQYLDLSANKLSGKIPPEIGQ-LSFLSELSLYSNC 142 (775)
Q Consensus 76 ~~~~~~l~~L~~L~ls~~~~------~~------~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~ 142 (775)
..++++++|++|+|++|.+ .+ .+|... +..|+ ++++++.+.+.+|..+.. +..+..+++....
T Consensus 99 -~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 99 -DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp -GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred -hHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 8999999999999999976 22 233322 44566 777777776666655542 1122222222111
Q ss_pred ccccCcccccCCCCCCEEEcc--cCcCcccCCcccCCCCCCCEEeccCCcCccc-----------------CCcccC--C
Q 043943 143 LNGSIPQSLGNLSKQSLLSLY--NNSLSGYIPPVIGNLISLSTLDLSLNQLIGS-----------------VPFFLG--N 201 (775)
Q Consensus 143 ~~~~~~~~~~~l~~L~~L~l~--~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~~~--~ 201 (775)
+.. .....++.+.+. .|.+++ +|..+.++++|++|++++|.+++. +|..++ +
T Consensus 175 ~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~ 247 (636)
T 4eco_A 175 IKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247 (636)
T ss_dssp CCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred ccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcc
Confidence 110 000111111111 234444 444555555555555555555443 555555 6
Q ss_pred CCCccEEEcccccCccccCccCCCCCCCCEEEccccc-ccc-cCCccccCC------CCCcEEEcccccCCCCCCc--cc
Q 043943 202 LTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH-LSG-AIPSSIGNV------RNLRSLFLYSNELSGSIPK--EI 271 (775)
Q Consensus 202 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l 271 (775)
+++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 6666666666666666666666666666666666665 655 555555554 66666666666666 5665 66
Q ss_pred cCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCC-CCeeeCcCCcCcCccCCcCCCCC--c
Q 043943 272 GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC-LFDLELSMNNLTGVIPSSIGNLR--N 348 (775)
Q Consensus 272 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~--~ 348 (775)
..+++|++|++++|.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..++ +
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 666666666666666666666 6666666666666666666 55666666666 777777766666 4555555433 6
Q ss_pred CcEEEccCCcCCCCchhhcc-------CCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccC--
Q 043943 349 LRLLYLYRNELSGSIPQAIG-------NLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY-- 419 (775)
Q Consensus 349 L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-- 419 (775)
|+.|++++|.+.+.+|..+. .+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+...
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~ 482 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE 482 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence 67777777776666666665 5566777777777766433333455677777777777776 3333332322
Q ss_pred -----CCCcEEeCCCccceeecCcCcC--CCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCC
Q 043943 420 -----PTLSFLDLSHNNFHGQISSDWG--RFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLS 492 (775)
Q Consensus 420 -----~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 492 (775)
++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++++|+
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------- 547 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------- 547 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB-------------
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc-------------
Confidence 38999999999998 6777776 89999999999999987 78888889999999996554
Q ss_pred CCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCc
Q 043943 493 SLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFS 553 (775)
Q Consensus 493 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 553 (775)
++++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|+|++|++.
T Consensus 548 -----~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 548 -----DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp -----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred -----ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 2344444444555555555555555555555 23343332 45555555555443
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.7e-53 Score=496.12 Aligned_cols=517 Identities=23% Similarity=0.213 Sum_probs=384.1
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccC-cccccCCCCCCEEeCcCCCCCCCCc
Q 043943 46 LCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGII-PPQISQLFKLQYLDLSANKLSGKIP 124 (775)
Q Consensus 46 ~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~-~~~~~~l~~L~~L~ls~n~~~~~~p 124 (775)
.|.|..|.+ ...+++.|+|+++.+.+..+ ..|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 357888888 67899999999999987666 78999999999999999665554 7889999999999999999998889
Q ss_pred hhccCCCCCCEEECCCccccccCccc--ccCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEeccCCcCcccCCcccCC
Q 043943 125 PEIGQLSFLSELSLYSNCLNGSIPQS--LGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLSTLDLSLNQLIGSVPFFLGN 201 (775)
Q Consensus 125 ~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 201 (775)
..|.++++|++|+|++|.+.+..|.. |.++++|++|++++|.+.+..+ ..|.++++|++|++++|.+.+..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999999866655 9999999999999999988765 57999999999999999999888888877
Q ss_pred C--CCccEEEcccccCccccCccCCCCCC------CCEEEcccccccccCCccccCC---CCCcEEEcccccC-------
Q 043943 202 L--TNLVTLHLFNNSLSGFIPSTLGKLKC------LSNLNMSMNHLSGAIPSSIGNV---RNLRSLFLYSNEL------- 263 (775)
Q Consensus 202 l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~------- 263 (775)
+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+.+..+..+... ..++.|.+..+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 7 89999999999999888887777766 9999999999988877766543 5788888874332
Q ss_pred --CCCCCccccCC--CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCcc
Q 043943 264 --SGSIPKEIGNL--RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVI 339 (775)
Q Consensus 264 --~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 339 (775)
.+..+..|..+ ++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 22222223332 45666666666665555555556666666666666665555555555556666666666555555
Q ss_pred CCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccC
Q 043943 340 PSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTY 419 (775)
Q Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 419 (775)
+..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ +. ..+
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------------------------~i------~~~ 380 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT------------------------TI------HFI 380 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC------------------------CC------SSC
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC------------------------cc------cCC
Confidence 555555555555555555555444444555555555555555443 21 114
Q ss_pred CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccC-CccccCCCCCcEEEccCCCccCcCCh-hhhcCCCCCEE
Q 043943 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSI-PPEIGNSSKLQVLNLSSNHIGGKIPM-ELGRLSSLNKL 497 (775)
Q Consensus 420 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L 497 (775)
++|+.|++++|++.. +|. ...+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|
T Consensus 381 ~~L~~L~l~~N~l~~-l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L 456 (844)
T 3j0a_A 381 PSIPDIFLSGNKLVT-LPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456 (844)
T ss_dssp CSCSEEEEESCCCCC-CCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred CCcchhccCCCCccc-ccc---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence 556666666666652 222 1456777777777776542 22355777888888888887754432 34557788888
Q ss_pred EcCCCcCc-----ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEEC
Q 043943 498 ILNKNQLF-----GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDL 572 (775)
Q Consensus 498 ~L~~n~~~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~L 572 (775)
++++|.+. +..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++
T Consensus 457 ~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~---~~L~~L~L 533 (844)
T 3j0a_A 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP---ANLEILDI 533 (844)
T ss_dssp EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC---SCCCEEEE
T ss_pred cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh---ccccEEEC
Confidence 88888876 34455678888999999999999988888888999999999999999876665554 38999999
Q ss_pred cCCcCcccCCccccCCCCCcEEeCCCCcCccc
Q 043943 573 SQNFLEGEIPSQICNMESLVKLNLSYNQLSGF 604 (775)
Q Consensus 573 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 604 (775)
++|++++.+|..|. +|+.|++++|++...
T Consensus 534 s~N~l~~~~~~~~~---~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 534 SRNQLLAPNPDVFV---SLSVLDITHNKFICE 562 (844)
T ss_dssp EEECCCCCCSCCCS---SCCEEEEEEECCCCS
T ss_pred CCCcCCCCChhHhC---CcCEEEecCCCcccc
Confidence 99999988887664 788999999988764
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.8e-52 Score=478.28 Aligned_cols=486 Identities=18% Similarity=0.225 Sum_probs=376.8
Q ss_pred CCCCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCC--Ccc------------cceeeCCCCCEEEEEcCCCC
Q 043943 4 PVSSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNL--CAW------------SGIYCNHDERVVGINLTTTS 69 (775)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--c~w------------~gv~c~~~~~v~~l~l~~~~ 69 (775)
+.+++..+|++||++||+++.+ | +|+...++. ..++ |.| .||.|+..++|+.|+|++++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~-~-----~W~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~ 334 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDG-K-----NWRYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG 334 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTG-G-----GCCCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTC
T ss_pred cccccchHHHHHHHHHHHHcCC-C-----CCCcCCCcc-cccCCccccccccccccccCcCceEecCCCCEEEEECccCC
Confidence 3445567899999999999965 4 898433221 2344 999 99999988999999999999
Q ss_pred CccccCccccCCCCCCCEEEC-CCCCCcccCcccc---------------------------------------------
Q 043943 70 LNGTLDEFSFSSFPDLLFLNL-FNNELFGIIPPQI--------------------------------------------- 103 (775)
Q Consensus 70 ~~~~~~~~~~~~l~~L~~L~l-s~~~~~~~~~~~~--------------------------------------------- 103 (775)
+.|.+| ..++++++|++|+| ++|.+.|..+...
T Consensus 335 L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~ 413 (876)
T 4ecn_A 335 AKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413 (876)
T ss_dssp CEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred CCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence 999999 89999999999999 8887766522110
Q ss_pred ------cCCCCCCEEeCcC--CCCCCCCchhccCCCCCCEEECCCccccc-----------------cCccccc--CCCC
Q 043943 104 ------SQLFKLQYLDLSA--NKLSGKIPPEIGQLSFLSELSLYSNCLNG-----------------SIPQSLG--NLSK 156 (775)
Q Consensus 104 ------~~l~~L~~L~ls~--n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~~--~l~~ 156 (775)
.....++.+.+.. |.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++
T Consensus 414 ~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 414 MKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred ccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 1122333344433 66776 88899999999999999999998 3888887 9999
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEeccCCc-Ccc-cCCcccCC-------CCCccEEEcccccCccccCc--cCCC
Q 043943 157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQ-LIG-SVPFFLGN-------LTNLVTLHLFNNSLSGFIPS--TLGK 225 (775)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~-------l~~L~~L~l~~n~l~~~~~~--~l~~ 225 (775)
|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++. +++|+.|++++|.++ .+|. .+.+
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~ 571 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK 571 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc
Confidence 9999999999999999999999999999999998 887 67765544 459999999999999 6777 8999
Q ss_pred CCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCC-CCEEEcccCcccccCCccCCCCCC--CC
Q 043943 226 LKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRS-LSNLDLSINRLNGVIPSSIGNSNN--LS 302 (775)
Q Consensus 226 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~--L~ 302 (775)
+++|++|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+
T Consensus 572 L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence 999999999999998 778 8999999999999999998 88888999999 999999999998 67877776654 99
Q ss_pred eeeccCccccCCCCccC---C--CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccC--------
Q 043943 303 ILYLYSNQLSGSIPKEI---G--NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGN-------- 369 (775)
Q Consensus 303 ~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-------- 369 (775)
.|++++|.+++.+|... . .+++|+.|++++|++....+..+..+++|+.|++++|.+. .+|..+..
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccc
Confidence 99999999988765422 2 3458999999999999544444458899999999999998 55544333
Q ss_pred CCCCcEEEeccceecccCCccCc--CCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCC
Q 043943 370 LVELVSLLLGFNYFRGPIPKNFK--NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLG 447 (775)
Q Consensus 370 l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 447 (775)
+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+.+ +|..+ ..+++|+.|++++|+
T Consensus 727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l-~~L~~L~~L~Ls~N~---------------- 787 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP-LNSSQLKAFGIRHQR---------------- 787 (876)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG-GGCTTCCEEECCCCB----------------
T ss_pred cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh-hcCCCCCEEECCCCC----------------
Confidence 338999999999998 6777776 78888888888888877 45554 577788888887654
Q ss_pred EEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCc
Q 043943 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENR 527 (775)
Q Consensus 448 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~ 527 (775)
++++|.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.|.+|.
T Consensus 788 --~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 788 --DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862 (876)
T ss_dssp --CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred --CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence 3344666666666666666677777776666 45555543 467777777776654444444333334444444444
Q ss_pred c
Q 043943 528 L 528 (775)
Q Consensus 528 l 528 (775)
.
T Consensus 863 ~ 863 (876)
T 4ecn_A 863 T 863 (876)
T ss_dssp T
T ss_pred c
Confidence 3
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-50 Score=453.71 Aligned_cols=518 Identities=22% Similarity=0.211 Sum_probs=394.5
Q ss_pred CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943 85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN 164 (775)
Q Consensus 85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 164 (775)
.+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 355677766666 4555443 5788888888888877777888888888888888888877777788888888888888
Q ss_pred CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccC
Q 043943 165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAI 243 (775)
Q Consensus 165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~ 243 (775)
|.+++..+..|..+++|++|++++|.+++..+..++++++|++|++++|.+++. +|..|.++++|++|++++|.+.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 888887778888888888888888887765555677888888888888887763 5777888888888888888877766
Q ss_pred CccccCCCCC----cEEEcccccCCCCCCccccCCCCCCEEEcccCcccc-cCCccCCCCCCCCeeeccCccccCCCCcc
Q 043943 244 PSSIGNVRNL----RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG-VIPSSIGNSNNLSILYLYSNQLSGSIPKE 318 (775)
Q Consensus 244 ~~~l~~l~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 318 (775)
+..++.+++| +.|++++|.+++..|..+..+ +|++|++++|.... ..+..+..+++++.+.+....+..
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~----- 239 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----- 239 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-----
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC-----
Confidence 6667777776 777777777776666666544 67777777764321 223344455555554443322211
Q ss_pred CCCCCCCCeeeCcCCcCcCccCCcCCCCC--cCcEEEccCC-cCCCCchhhccCCCCCcEEEeccceecccCCccCcCCC
Q 043943 319 IGNLKCLFDLELSMNNLTGVIPSSIGNLR--NLRLLYLYRN-ELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT 395 (775)
Q Consensus 319 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 395 (775)
...++. .....+..++ .++.+++..+ .+.+..+..+..+++|+.|++++|.+. .+|..+..+
T Consensus 240 ---~~~l~~----------~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~- 304 (570)
T 2z63_A 240 ---EGNLEK----------FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF- 304 (570)
T ss_dssp ---CSSCEE----------CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-
T ss_pred ---chhhhh----------cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-
Confidence 011111 1111122222 3455666665 555666667777777777777777776 356666666
Q ss_pred cccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccC--CccccCCCCCcEE
Q 043943 396 NLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSI--PPEIGNSSKLQVL 473 (775)
Q Consensus 396 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L 473 (775)
+|+.|++++|.+. .++. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 305 ~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 378 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378 (570)
T ss_dssp CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence 7888888877776 3332 3577888888888887766554 67889999999999888654 6778899999999
Q ss_pred EccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcC
Q 043943 474 NLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP-PEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552 (775)
Q Consensus 474 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 552 (775)
++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 379 ~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 457 (570)
T 2z63_A 379 DLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457 (570)
T ss_dssp ECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcC
Confidence 9999998865554 8889999999999999987665 5688899999999999999998899999999999999999999
Q ss_pred c-cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943 553 S-HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF 631 (775)
Q Consensus 553 ~-~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 631 (775)
+ +.+|..+..++ +|+.|++++|++++..|..|..+++|++|++++|++++.+|..|..+++|+.|++++|++.|.+|.
T Consensus 458 ~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 458 QENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp GGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccchhhhhccc-CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 7 57888888888 999999999999998899999999999999999999999999999999999999999999999997
Q ss_pred CCc
Q 043943 632 SKA 634 (775)
Q Consensus 632 ~~~ 634 (775)
.+.
T Consensus 537 ~~~ 539 (570)
T 2z63_A 537 IDY 539 (570)
T ss_dssp THH
T ss_pred hHH
Confidence 543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-49 Score=447.75 Aligned_cols=489 Identities=23% Similarity=0.220 Sum_probs=372.0
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999888889999999999999999999888888999999999999999999888899999999999999
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCC----CEEEcccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL----SNLNMSMN 237 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n 237 (775)
++|.+++..+..+.++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999998877789999999999999999886 468899999999999999999998888889888888 89999999
Q ss_pred cccccCCccccCCCCCcEEEcccccCCC-CCCccccCCCCCCEEEcccCccc------ccCCccCCCCCC--CCeeeccC
Q 043943 238 HLSGAIPSSIGNVRNLRSLFLYSNELSG-SIPKEIGNLRSLSNLDLSINRLN------GVIPSSIGNSNN--LSILYLYS 308 (775)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~------~~~~~~l~~l~~--L~~L~l~~ 308 (775)
.+.+..+..+..+ +|+.|++++|.... .++..+..+++++.+.+....+. ......+..+.+ ++.+++.+
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 9998888877766 89999999985432 34556777888887776543322 111122222222 33444444
Q ss_pred c-cccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC
Q 043943 309 N-QLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387 (775)
Q Consensus 309 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 387 (775)
+ .+.+..+..+..+++|++|++++|.+.+ +|..+..+ +|++|++++|.+. .+|. ..+++|+.|+++
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~-------- 333 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT-------- 333 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE--------
T ss_pred chhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCc--------
Confidence 4 4455555555556666666666665553 44445555 5666666655554 2222 234444444444
Q ss_pred CccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeec--CcCcCCCCCCCEEEcccCcccccCCcccc
Q 043943 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI--SSDWGRFPQLGTLDFSVNNITGSIPPEIG 465 (775)
Q Consensus 388 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 465 (775)
+|.+.+..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +.
T Consensus 334 ----------------~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 393 (570)
T 2z63_A 334 ----------------SNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL 393 (570)
T ss_dssp ----------------SCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE
T ss_pred ----------------CCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc
Confidence 4444433332 34566677777776665543 45566777777777777777754443 77
Q ss_pred CCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCccc-ccCCccccCcCCCC
Q 043943 466 NSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLS-NAIPGSLGNLLKVH 543 (775)
Q Consensus 466 ~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~l~~L~ 543 (775)
.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 78888888888887776655 45677888888888888888777777888888888888888886 46777888888888
Q ss_pred EEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCC
Q 043943 544 YLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIP 606 (775)
Q Consensus 544 ~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 606 (775)
+|+|++|++++..|..+..++ +|+.|++++|++++..|..|..+++|+.|++++|++++..|
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 888888888887788888777 88888888888888888888899999999999999887765
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.9e-48 Score=433.30 Aligned_cols=492 Identities=19% Similarity=0.182 Sum_probs=366.6
Q ss_pred CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943 106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185 (775)
Q Consensus 106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 185 (775)
|+...+.+.+++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 445556788888888 5666553 7899999999999888888899999999999999999988888899999999999
Q ss_pred ccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccC-CccccCCCCCcEEEcccccC
Q 043943 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAI-PSSIGNVRNLRSLFLYSNEL 263 (775)
Q Consensus 186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~ 263 (775)
+++|.+.+..+..|+++++|++|++++|.+++. .+..+.++++|++|++++|.+.+.+ +..+..+++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999998877777788899999999999988763 4667888889999999888743344 45788888888888888888
Q ss_pred CCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCC--C-ccCCCCCCCCeeeCcCCcCcCccC
Q 043943 264 SGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSI--P-KEIGNLKCLFDLELSMNNLTGVIP 340 (775)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~ 340 (775)
++..|..+..+++|++|+++.|.+.......+..+++|++|++++|.+++.. + .....+++|+.|++++|.+.+..+
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 8778888888888888888888776433333345777888888888777531 1 112345566666666666554322
Q ss_pred ----CcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceecccccccccc-----
Q 043943 341 ----SSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNI----- 411 (775)
Q Consensus 341 ----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~----- 411 (775)
..+..+++|+.+++++|.+.+..... ......+..+++|+.+.+.++.+....
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFN------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCC------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred HHHHHHhhhhcccccccccccccccccccc------------------ccchhhhhhhcccccccccccccchhhhcccc
Confidence 22344455566666655543321000 000112334455555555555443211
Q ss_pred chhhhccCCCCcEEeCCCccceeecCcCc-CCCCCCCEEEcccCcccccCCc---cccCCCCCcEEEccCCCccCcCC--
Q 043943 412 SEAFVGTYPTLSFLDLSHNNFHGQISSDW-GRFPQLGTLDFSVNNITGSIPP---EIGNSSKLQVLNLSSNHIGGKIP-- 485 (775)
Q Consensus 412 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~l~~~~~-- 485 (775)
+. .....++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..+
T Consensus 303 ~~-~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 303 ST-VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp CH-HHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred hh-hhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch
Confidence 11 1234568888888888876 455544 5688899999999988876543 46788899999999999886543
Q ss_pred hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhc
Q 043943 486 MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQL 565 (775)
Q Consensus 486 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 565 (775)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++.. |..+ .++|++|+|++|++++.+ ..++
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~- 451 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLP- 451 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCT-
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCC-
Confidence 45788999999999999998 6788888899999999999998754 3333 368999999999998754 3455
Q ss_pred cccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943 566 QLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF 631 (775)
Q Consensus 566 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 631 (775)
+|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+.|++++|++.|.+|.
T Consensus 452 ~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 452 RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 8999999999998 6776 46799999999999999999999999999999999999999999884
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.9e-47 Score=429.50 Aligned_cols=498 Identities=20% Similarity=0.209 Sum_probs=349.1
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCch
Q 043943 46 LCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPP 125 (775)
Q Consensus 46 ~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~ 125 (775)
.|.|.|+ |+. +++.+. .+| ..+ .++|++|++++|.+++..|..|.++++|++|++++|.+.+..|.
T Consensus 3 ~C~~~~~-c~~---------~~~~l~-~ip-~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG---------RSRSFT-SIP-SGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC---------TTSCCS-SCC-SCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC---------CCCccc-ccc-ccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4999998 753 223333 344 222 26899999999999888888889999999999999998887778
Q ss_pred hccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCccc-CCcccCCCCCCCEEeccCCcCcccCC-cccCCCC
Q 043943 126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGY-IPPVIGNLISLSTLDLSLNQLIGSVP-FFLGNLT 203 (775)
Q Consensus 126 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~ 203 (775)
.|..+++|++|++++|.+++..|..|.++++|++|++++|.+++. .+..+.++++|++|++++|.+.+.+| ..+.+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 888999999999999998877777788888888888888888763 45677888888888888887433443 5677778
Q ss_pred CccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCC--C-ccccCCCCCCEE
Q 043943 204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI--P-KEIGNLRSLSNL 280 (775)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~-~~l~~l~~L~~L 280 (775)
+|++|++++|.+++..|..+..+++|++|++++|.+.......+..+++|++|++++|.+++.. | .....+++|+.|
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 8888888888877777777777777777777777665322222345677777777777776531 1 112345666666
Q ss_pred EcccCcccccCCc----cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccC
Q 043943 281 DLSINRLNGVIPS----SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYR 356 (775)
Q Consensus 281 ~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 356 (775)
++++|.+++..+. .+..+++|+.+++++|.+.+... + +. .....+..+++|+.|++.+
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~--~---~~-------------~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD--F---NP-------------SESDVVSELGKVETVTIRR 290 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC--C---CC-------------CTTTCCCCCTTCCEEEEES
T ss_pred eccccccchhHHHHHHHHhhhhcccccccccccccccccc--c---cc-------------cchhhhhhhcccccccccc
Confidence 6666665543222 22344555555555555443210 0 00 0012234556677777776
Q ss_pred CcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeec
Q 043943 357 NELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQI 436 (775)
Q Consensus 357 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 436 (775)
+.+.... .+.. ++..+...++|+.+++++|.+. .+|..++..+++|++|++++|++.+.+
T Consensus 291 ~~i~~~~--~~~~-----------------l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~ 350 (549)
T 2z81_A 291 LHIPQFY--LFYD-----------------LSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY 350 (549)
T ss_dssp CBCSCGG--GSCC-----------------CCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred cccchhh--hccc-----------------chhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccc
Confidence 6544211 0000 1111222345566666666554 344444456777888888888777655
Q ss_pred C---cCcCCCCCCCEEEcccCcccccCC--ccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcC
Q 043943 437 S---SDWGRFPQLGTLDFSVNNITGSIP--PEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPE 511 (775)
Q Consensus 437 ~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 511 (775)
+ ..+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..
T Consensus 351 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~ 428 (549)
T 2z81_A 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC 428 (549)
T ss_dssp HHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT
T ss_pred ccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch
Confidence 3 346778888888888888875432 45788899999999999888 567778888999999999998873 4433
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCC
Q 043943 512 IGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESL 591 (775)
Q Consensus 512 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 591 (775)
+ .++|++|++++|++++.+ ..+++|++|+|++|+++ .+|. ...++ +|+.|++++|++++.+|..|..+++|
T Consensus 429 ~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 429 I--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFP-VLLVMKISRNQLKSVPDGIFDRLTSL 499 (549)
T ss_dssp S--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCT-TCCEEECCSSCCCCCCTTGGGGCTTC
T ss_pred h--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCc-cCCEEecCCCccCCcCHHHHhcCccc
Confidence 3 368999999999998653 57889999999999998 5665 45566 99999999999999889899999999
Q ss_pred cEEeCCCCcCcccCC
Q 043943 592 VKLNLSYNQLSGFIP 606 (775)
Q Consensus 592 ~~L~ls~n~l~~~~p 606 (775)
+.|++++|++.+..|
T Consensus 500 ~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 500 QKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCBCCCHH
T ss_pred CEEEecCCCccCCCc
Confidence 999999999988766
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-48 Score=440.83 Aligned_cols=513 Identities=18% Similarity=0.217 Sum_probs=410.3
Q ss_pred CcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCccc-ceeeCCC---CCEEEEEcCCCCCccccCccccCCCC
Q 043943 8 DSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWS-GIYCNHD---ERVVGINLTTTSLNGTLDEFSFSSFP 83 (775)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~-gv~c~~~---~~v~~l~l~~~~~~~~~~~~~~~~l~ 83 (775)
.++++...-.++++-... -.+ ..|...+ ......|.|. +..|+.+ ..|+.- . -.
T Consensus 24 ~~~~~~~d~~aL~~~~~~-~~~--~~w~~~~--~~~~~~~~W~~~~~~c~w~~~~GV~C~-------------~----~~ 81 (636)
T 4eco_A 24 RTAEYIKDYLALKEIWDA-LNG--KNWSQQG--FGTQPGANWNFNKELDMWGAQPGVSLN-------------S----NG 81 (636)
T ss_dssp CCCHHHHHHHHHHHHHHH-TTG--GGCCCCC--------CCCCCSSCGGGTTCCTTEEEC-------------T----TC
T ss_pred hhhhHHHHHHHHHHHHHH-cCC--CCcccCC--cCCccCCCCCCCCCcccccCCCCeEEc-------------C----CC
Confidence 334555666666655554 222 3687321 0111235796 4555566 555530 0 04
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCC------CC------CCchhccCCCCCCEEECCCccccccCcccc
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL------SG------KIPPEIGQLSFLSELSLYSNCLNGSIPQSL 151 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~------~~------~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~ 151 (775)
+++.|+|+++.+.|.+|.+++++++|++|+|++|.+ .+ .+|... +..|+ ++++.+.+.+..|..+
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGS
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhH
Confidence 788999999999999999999999999999999976 22 233333 45666 7777777777666655
Q ss_pred cC-CCCCCEEEcccCcCcccCCcccCCCCCCCEEecc--CCcCcccCCcccCCCCCccEEEcccccCccc----------
Q 043943 152 GN-LSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS--LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF---------- 218 (775)
Q Consensus 152 ~~-l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~--~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------- 218 (775)
.. +..+..+++....+.. .....++.+.+. .|.+++ +|..++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred HHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence 42 1222222222222111 112233333333 577887 899999999999999999999985
Q ss_pred -------cCccCC--CCCCCCEEEcccccccccCCccccCCCCCcEEEccccc-CCC-CCCccccCC------CCCCEEE
Q 043943 219 -------IPSTLG--KLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE-LSG-SIPKEIGNL------RSLSNLD 281 (775)
Q Consensus 219 -------~~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~ 281 (775)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+..+ ++|++|+
T Consensus 232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 899999 99999999999999999999999999999999999998 988 789888776 9999999
Q ss_pred cccCcccccCCc--cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCc-CcEEEccCCc
Q 043943 282 LSINRLNGVIPS--SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN-LRLLYLYRNE 358 (775)
Q Consensus 282 l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~ 358 (775)
+++|.++ .+|. .+..+++|++|++++|.++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 9999999 7787 89999999999999999998888 8999999999999999999 77888999999 9999999999
Q ss_pred CCCCchhhccCCC--CCcEEEeccceecccCCccCc-------CCCcccceeccccccccccchhhhccCCCCcEEeCCC
Q 043943 359 LSGSIPQAIGNLV--ELVSLLLGFNYFRGPIPKNFK-------NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSH 429 (775)
Q Consensus 359 l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 429 (775)
++ .+|..+..+. +|+.|++++|.+.+..|..+. .+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCC
Confidence 98 7788777655 899999999999999998888 8889999999999999 45555557899999999999
Q ss_pred ccceeecCcCcCCC-------CCCCEEEcccCcccccCCcccc--CCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcC
Q 043943 430 NNFHGQISSDWGRF-------PQLGTLDFSVNNITGSIPPEIG--NSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN 500 (775)
Q Consensus 430 n~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 500 (775)
|+++...+..+... ++|++|++++|.++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|+|+
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 99994333334333 39999999999999 6788776 99999999999999997 88889999999999999
Q ss_pred CCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCccc
Q 043943 501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE 580 (775)
Q Consensus 501 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~ 580 (775)
+|+ ++++|++.+.+|..+..+++|++|+|++|++ +.+|..+. + +|+.|++++|.+...
T Consensus 545 ~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~-~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 545 NQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P-NISVLDIKDNPNISI 602 (636)
T ss_dssp SCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T-TCCEEECCSCTTCEE
T ss_pred CCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C-cCCEEECcCCCCccc
Confidence 987 6788999999999999999999999999999 67887755 3 999999999988643
Q ss_pred C
Q 043943 581 I 581 (775)
Q Consensus 581 ~ 581 (775)
.
T Consensus 603 ~ 603 (636)
T 4eco_A 603 D 603 (636)
T ss_dssp E
T ss_pred c
Confidence 3
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.6e-45 Score=420.81 Aligned_cols=518 Identities=22% Similarity=0.204 Sum_probs=369.2
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|+|++|.|++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999888889999999999999999999877888999999999999999999777778999999999999
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCC----CEEEcccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL----SNLNMSMN 237 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~l~~n 237 (775)
++|++++..+..|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+++..+..|..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999998888889999999999999998875 356778889999999999999998888877665544 46788888
Q ss_pred cccccCCccccCCCCCcEEEcccccCCC-CCCccccCCCCCCEEEcccCccc------ccCCccCCCCCCCCeeeccCcc
Q 043943 238 HLSGAIPSSIGNVRNLRSLFLYSNELSG-SIPKEIGNLRSLSNLDLSINRLN------GVIPSSIGNSNNLSILYLYSNQ 310 (775)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~------~~~~~~l~~l~~L~~L~l~~n~ 310 (775)
.+....+.. .....++.+++.+|.... ..+..+..+..++...+..+... ......+..+..+....+..+.
T Consensus 212 ~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 887554443 344567778887775442 22334556677766665433221 1122223333333333333222
Q ss_pred ccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCcc
Q 043943 311 LSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKN 390 (775)
Q Consensus 311 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 390 (775)
..... ......+..+.+++.+.+..+.+.... .+.....++.|++.+|.+.+..+.
T Consensus 291 ~~~~~---------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~- 346 (635)
T 4g8a_A 291 LDYYL---------------------DGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL- 346 (635)
T ss_dssp CCSCE---------------------EECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC-
T ss_pred hcccc---------------------cchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc-
Confidence 11100 011122333344444444444433221 123334455555555544433222
Q ss_pred CcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccce--eecCcCcCCCCCCCEEEcccCcccccCCccccCCC
Q 043943 391 FKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFH--GQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSS 468 (775)
Q Consensus 391 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 468 (775)
.+..|+.+.+..|........ ..+++|+.+++++|.+. +..+..+..+.+|+.+++..+.+.. .+..+..++
T Consensus 347 --~l~~L~~l~l~~n~~~~~~~~---~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~ 420 (635)
T 4g8a_A 347 --KLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE 420 (635)
T ss_dssp --BCTTCCEEEEESCCSCCBCCC---CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT
T ss_pred --cchhhhhcccccccCCCCccc---ccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc
Confidence 233445555555544332221 34567777777777654 2344455566777777777776653 344567778
Q ss_pred CCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcc-cccCCccccCcCCCCEEE
Q 043943 469 KLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRL-SNAIPGSLGNLLKVHYLN 546 (775)
Q Consensus 469 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l-~~~~~~~~~~l~~L~~L~ 546 (775)
+|+.++++.+......+ ..+..+++++.+++++|.+.+..+..+..+++|+.|++++|.+ .+..|..|..+++|++|+
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~ 500 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEE
Confidence 88888887776654443 4567788888888888888877777888888888888888874 445677888888899999
Q ss_pred ccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCC-CCCCEEeCCCCcc
Q 043943 547 LSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDM-HGLSSIDISYNRL 625 (775)
Q Consensus 547 Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~l~ls~n~l 625 (775)
|++|++++..|..|..++ +|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+ ++|+.|++++|++
T Consensus 501 Ls~N~L~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp CTTSCCCEECTTTTTTCT-TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCccCCcChHHHcCCC-CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 999988888888888888 89999999999998888899999999999999999999999999888 6899999999999
Q ss_pred cccCCCC
Q 043943 626 QGPVPFS 632 (775)
Q Consensus 626 ~~~~p~~ 632 (775)
.|.|...
T Consensus 580 ~C~C~~~ 586 (635)
T 4g8a_A 580 ACTCEHQ 586 (635)
T ss_dssp CCSGGGH
T ss_pred cccCCcH
Confidence 9988743
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-45 Score=411.86 Aligned_cols=465 Identities=20% Similarity=0.227 Sum_probs=288.9
Q ss_pred CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCC
Q 043943 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLN 189 (775)
Q Consensus 110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 189 (775)
++|++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57888998888 5676665 78899999999888777778888888888888888888887888888888888888888
Q ss_pred cCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccCCccccCCCCC--cEEEcccccC--C
Q 043943 190 QLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL--RSLFLYSNEL--S 264 (775)
Q Consensus 190 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--~ 264 (775)
.++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 877 45544 677888888888887763 56777777788888877777764 245555666 7777777776 5
Q ss_pred CCCCccccCCC-CCCEEEcccCcccccCC-ccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCc
Q 043943 265 GSIPKEIGNLR-SLSNLDLSINRLNGVIP-SSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSS 342 (775)
Q Consensus 265 ~~~~~~l~~l~-~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 342 (775)
+..|..+..+. +...+++++|.+.+..+ ..+..+++|+.+++++|...... ..+.+.++ .
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-----------------~~~~~~~~-~ 215 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC-----------------SYFLSILA-K 215 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTT-----------------HHHHHHHH-G
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccc-----------------ceeecchh-h
Confidence 55555555443 12234445555443322 23344444444444444300000 00333333 4
Q ss_pred CCCCCcCcEEEccCCcCCCCchhhc---cCCCCCcEEEeccceecccCCccC-----cCCCcccceeccccccccccchh
Q 043943 343 IGNLRNLRLLYLYRNELSGSIPQAI---GNLVELVSLLLGFNYFRGPIPKNF-----KNLTNLVRVRMNQNNLSGNISEA 414 (775)
Q Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~ 414 (775)
+..+++|+.|++++|.+.+..+..+ ...++|+.|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+|..
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~ 293 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS 293 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh
Confidence 5556666666666665543222111 113577788888888777777776 6677777777777766 33321
Q ss_pred hhccC---CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcC
Q 043943 415 FVGTY---PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRL 491 (775)
Q Consensus 415 ~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 491 (775)
....+ .+|+.|++++|.+.... .+..+++|++|++++|.+++.+|..+..+++|++|++++|++.+..
T Consensus 294 ~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------- 364 (520)
T 2z7x_B 294 YIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS------- 364 (520)
T ss_dssp HHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH-------
T ss_pred hhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc-------
Confidence 11221 45666666666544221 0134445555555555554444444444444444444444444310
Q ss_pred CCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCC-ccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943 492 SSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL 570 (775)
Q Consensus 492 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L 570 (775)
.+|..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++.+|..+. ++|+.|
T Consensus 365 ---------------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L 426 (520)
T 2z7x_B 365 ---------------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVL 426 (520)
T ss_dssp ---------------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEE
T ss_pred ---------------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEE
Confidence 233344555555555555555554222 2355556666666666666555554432 277788
Q ss_pred ECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943 571 DLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF 631 (775)
Q Consensus 571 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 631 (775)
++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.++.
T Consensus 427 ~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 88888877 7777777888888888888888854444588888999999999999888774
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=411.40 Aligned_cols=449 Identities=19% Similarity=0.224 Sum_probs=223.5
Q ss_pred EEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCc
Q 043943 87 FLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNS 166 (775)
Q Consensus 87 ~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 166 (775)
+|++++|.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..|..|.++++|++|++++|.
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 4555555554 2343333 455555555555554444555555555555555555554445555555555555555555
Q ss_pred CcccCCcccCCCCCCCEEeccCCcCcc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCC--CEEEcccccc--cc
Q 043943 167 LSGYIPPVIGNLISLSTLDLSLNQLIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL--SNLNMSMNHL--SG 241 (775)
Q Consensus 167 ~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~~--~~ 241 (775)
++.. |.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 5532 222 45555555555555554 244555555555666655555543 234444444 6666666655 44
Q ss_pred cCCccccCCC-CCcEEEcccccCCCCCCc-cccCCCCCCEEEcccCc-------ccccCCccCCCCCCCCeeeccCcccc
Q 043943 242 AIPSSIGNVR-NLRSLFLYSNELSGSIPK-EIGNLRSLSNLDLSINR-------LNGVIPSSIGNSNNLSILYLYSNQLS 312 (775)
Q Consensus 242 ~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L~l~~n~l~ 312 (775)
..|..+..+. ....+++++|.+.+.++. .+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 5555554443 223445555555443332 34556666666666665 444433 4556666666666666555
Q ss_pred CCCCccC---CCCCCCCeeeCcCCcCcCccCCcC-----CCCCcCcEEEccCCcCCCCch-hhccCC---CCCcEEEecc
Q 043943 313 GSIPKEI---GNLKCLFDLELSMNNLTGVIPSSI-----GNLRNLRLLYLYRNELSGSIP-QAIGNL---VELVSLLLGF 380 (775)
Q Consensus 313 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~L~l~~ 380 (775)
+..+..+ ...++|++|++++|++.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 3221111 113466777777777666666665 6667777777777766 333 333332 4566666666
Q ss_pred ceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccc--
Q 043943 381 NYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG-- 458 (775)
Q Consensus 381 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-- 458 (775)
|.+.... .+..++ +|++|++++|++.+..|..+..+++|++|++++|++++
T Consensus 312 n~l~~~~--~~~~l~-------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 312 TRMVHML--CPSKIS-------------------------PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp SCCCCCC--CCSSCC-------------------------CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred Ccccccc--chhhCC-------------------------cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 6554221 012334 44444444444444444444444444444444444443
Q ss_pred cCCccccCCCCCcEEEccCCCccCcCCh-hhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCcccc
Q 043943 459 SIPPEIGNSSKLQVLNLSSNHIGGKIPM-ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLG 537 (775)
Q Consensus 459 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 537 (775)
.+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 2333444444444444444444442332 234444445555555444444333332 34455555555444 3333333
Q ss_pred CcCCCCEEEccCCcCccCCchh-HHhhhccccEEECcCCcCcc
Q 043943 538 NLLKVHYLNLSNNEFSHKIPTQ-FEKLQLQLSELDLSQNFLEG 579 (775)
Q Consensus 538 ~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~~L~~L~Ls~n~l~~ 579 (775)
.+++|++|+|++|+++. +|.. +..++ +|+.|++++|.+++
T Consensus 442 ~l~~L~~L~L~~N~l~~-l~~~~~~~l~-~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 442 KLEALQELNVASNQLKS-VPDGIFDRLT-SLQKIWLHTNPWDC 482 (520)
T ss_dssp GCTTCCEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred cCCCCCEEECCCCcCCc-cCHHHhccCC-cccEEECcCCCCcc
Confidence 44555555555555442 3322 33443 45555555555443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-44 Score=417.58 Aligned_cols=464 Identities=19% Similarity=0.226 Sum_probs=222.3
Q ss_pred CCCCEEeCcCCCCCCCCchhccCCCCCCEEEC-CCccccccCcccccCC-CCCCEEE-----c----------ccCcCcc
Q 043943 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSL-YSNCLNGSIPQSLGNL-SKQSLLS-----L----------YNNSLSG 169 (775)
Q Consensus 107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L-~~n~~~~~~~~~~~~l-~~L~~L~-----l----------~~n~~~~ 169 (775)
.+++.|+|+++.+.|.+|..|+++++|++|+| ++|.+.|..|...... ..+.... . ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 45777777777777777777777788888888 7776665533211100 0000000 0 0000000
Q ss_pred cC-----------CcccCCCCCCCEEeccC--CcCcccCCcccCCCCCccEEEcccccCcc-----------------cc
Q 043943 170 YI-----------PPVIGNLISLSTLDLSL--NQLIGSVPFFLGNLTNLVTLHLFNNSLSG-----------------FI 219 (775)
Q Consensus 170 ~~-----------~~~l~~l~~L~~L~l~~--n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~ 219 (775)
.. +........++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 00001111222222222 44444 45555555555555555555555 24
Q ss_pred CccCC--CCCCCCEEEcccccccccCCccccCCCCCcEEEccccc-CCC-CCCccccCC-------CCCCEEEcccCccc
Q 043943 220 PSTLG--KLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE-LSG-SIPKEIGNL-------RSLSNLDLSINRLN 288 (775)
Q Consensus 220 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l-------~~L~~L~l~~n~~~ 288 (775)
|..++ ++++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ .+|..+..+ ++|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 44444 55555555555555555555555555555555555554 444 344433322 25555555555555
Q ss_pred ccCCc--cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCc-CcEEEccCCcCCCCchh
Q 043943 289 GVIPS--SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRN-LRLLYLYRNELSGSIPQ 365 (775)
Q Consensus 289 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 365 (775)
.+|. .+..+++|+.|++++|.++ .+| .+..+++|+.|++++|++. .+|..+..+++ |+.|++++|.+. .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 4444 4555555555555555554 444 4555555555555555555 44444555554 555555555554 3444
Q ss_pred hccCCCC--CcEEEeccceecccCCccC---c--CCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCc
Q 043943 366 AIGNLVE--LVSLLLGFNYFRGPIPKNF---K--NLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISS 438 (775)
Q Consensus 366 ~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 438 (775)
.+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.+. .+|..++..+++|+.|++++|++. .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 4433322 5555555555544333211 1 2234555555555544 233333344455555555555544 2222
Q ss_pred Cc-CCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhh--cCCCCCEEEcCCCcCcccCCcCccCC
Q 043943 439 DW-GRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELG--RLSSLNKLILNKNQLFGSLPPEIGTL 515 (775)
Q Consensus 439 ~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l 515 (775)
.+ .... ..+.++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+
T Consensus 715 ~~~~~~~-----------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L 775 (876)
T 4ecn_A 715 NSLKPKD-----------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNS 775 (876)
T ss_dssp TSSSCTT-----------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred HHhcccc-----------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcC
Confidence 21 1111 00001124445555544444 3344443 44455555555555443 34444444
Q ss_pred CCCCEEECCC------CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCC
Q 043943 516 TELELLDLSE------NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNME 589 (775)
Q Consensus 516 ~~L~~L~ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~ 589 (775)
++|+.|+|++ |.+.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....+..++...
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCccChHHccccc
Confidence 5555554433 556666666666666666666666666 45555533 2666666666666655555555444
Q ss_pred CCcEEeCCCCcC
Q 043943 590 SLVKLNLSYNQL 601 (775)
Q Consensus 590 ~L~~L~ls~n~l 601 (775)
.+..+.+.+|..
T Consensus 852 ~~~~~~L~~n~~ 863 (876)
T 4ecn_A 852 EAGMYVLLYDKT 863 (876)
T ss_dssp HTTCCEEECCTT
T ss_pred cchheeecCCCc
Confidence 444555555544
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.8e-42 Score=394.04 Aligned_cols=533 Identities=22% Similarity=0.206 Sum_probs=398.0
Q ss_pred EEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCc
Q 043943 87 FLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNS 166 (775)
Q Consensus 87 ~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 166 (775)
+.+-++..++ .+|..+. +++++|||++|.+++..+.+|.++++|++|+|++|+++++.|.+|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3455555565 4565443 478999999999987777789999999999999999987777788999999999999998
Q ss_pred CcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccCCc
Q 043943 167 LSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAIPS 245 (775)
Q Consensus 167 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~ 245 (775)
+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+++. .|..+..+++|++|++++|.+++..+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 8888778888888888888888888876666788888888888888887653 466777788888888888888777666
Q ss_pred cccCCCCC----cEEEcccccCCCCCCccccCCCCCCEEEcccCcccc-cCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943 246 SIGNVRNL----RSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG-VIPSSIGNSNNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 246 ~l~~l~~L----~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
.+..+.++ ..++++.|.++...+..+ ....++.+++.+|.... ..+..+..+..++...+..+.....
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~------ 264 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE------ 264 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS------
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccc------
Confidence 66554433 356666666654333322 33345556665554332 1122233444444333322211100
Q ss_pred CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC---CchhhccCCCCCcEEEeccceecccCCccCcCCCcc
Q 043943 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG---SIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNL 397 (775)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 397 (775)
..+.......+..+..+....+..+.... .....+..+..++.+.+..+.+.... .+....+|
T Consensus 265 ------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L 330 (635)
T 4g8a_A 265 ------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGW 330 (635)
T ss_dssp ------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCC
T ss_pred ------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhh
Confidence 11111222334445556665555443322 22344566778899999988877543 35667789
Q ss_pred cceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccc--cCCccccCCCCCcEEEc
Q 043943 398 VRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITG--SIPPEIGNSSKLQVLNL 475 (775)
Q Consensus 398 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~L 475 (775)
+.|++.+|.+.+... ..++.|+.+++..|..... .....+++|+.+++++|.+.. ..+..+..+.+|+++++
T Consensus 331 ~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 331 QHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp SEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhcccccccCcCc----ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 999999998875544 3467899999998877643 344578999999999998864 35667788999999999
Q ss_pred cCCCccCcCChhhhcCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCc-
Q 043943 476 SSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP-PEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFS- 553 (775)
Q Consensus 476 s~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~- 553 (775)
+.|.... .+..+..+++|+.+++.+|......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|+|++|.+.
T Consensus 405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred ccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence 9998874 45567889999999999998876544 45788999999999999999999999999999999999999754
Q ss_pred cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCC
Q 043943 554 HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633 (775)
Q Consensus 554 ~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~ 633 (775)
+..|..+..++ +|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|..-
T Consensus 484 ~~~~~~~~~l~-~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 484 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred ccCchhhhhcc-ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 45677788888 99999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred -cC-CCCCccccCCCcCCCC
Q 043943 634 -AF-RDAPAEALQGNRGLCG 651 (775)
Q Consensus 634 -~~-~~~~~~~~~gn~~lc~ 651 (775)
.+ ..+....+.+||..|.
T Consensus 563 ~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TCCCTTCCEEECTTCCBCCS
T ss_pred HhhhCcCCEEEeeCCCCccc
Confidence 12 3456667899999886
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-42 Score=388.31 Aligned_cols=465 Identities=20% Similarity=0.186 Sum_probs=294.3
Q ss_pred CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943 106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185 (775)
Q Consensus 106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 185 (775)
+...+++++++|.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 4455889999998884 666553 7889999999988877778888888888888888888888888888888888888
Q ss_pred ccCCcCcccCCcccCCCCCccEEEcccccCccc-cCccCCCCCCCCEEEcccccccccCCccccCCCCC--cEEEccccc
Q 043943 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF-IPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL--RSLFLYSNE 262 (775)
Q Consensus 186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~ 262 (775)
+++|.++ .+|.. .+++|++|++++|.+++. .|..|.++++|++|++++|.+.+. .+..+++| +.|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 8888877 45544 678888888888887764 356777788888888888777643 34444444 777777777
Q ss_pred C--CCCCCccccCCC--CCCEEEcccCcccccCCc-cCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcC
Q 043943 263 L--SGSIPKEIGNLR--SLSNLDLSINRLNGVIPS-SIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337 (775)
Q Consensus 263 ~--~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 337 (775)
+ ++..|..+..+. .+ .+++++|.+.+..+. .+..+++|+.+++++|..... .+.+
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~~ 240 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLMT 240 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHHH
T ss_pred ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHHH
Confidence 7 666666555443 22 345555555443322 233444555555554421000 0111
Q ss_pred ccCCcCCCCCcCcEEEccCCcCCCC----chhhccCCCCCcEEEeccceecccCCccC-----cCCCcccceeccccccc
Q 043943 338 VIPSSIGNLRNLRLLYLYRNELSGS----IPQAIGNLVELVSLLLGFNYFRGPIPKNF-----KNLTNLVRVRMNQNNLS 408 (775)
Q Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~ 408 (775)
. ...+..++.|+.+++.++.+.+. ++..+ ..++|+.|++++|.+.+.+|..+ ..++.|+.+++..+.+
T Consensus 241 ~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~- 317 (562)
T 3a79_B 241 F-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF- 317 (562)
T ss_dssp H-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-
T ss_pred H-HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-
Confidence 1 11234445555555555544321 11111 23367777777777776666655 4445555555544444
Q ss_pred cccchhhhc---cCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCC
Q 043943 409 GNISEAFVG---TYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP 485 (775)
Q Consensus 409 ~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 485 (775)
.+|..... ...+|+.|++++| .+.... ....+++|++|++++|++++..|
T Consensus 318 -~~p~~~~~~~~~~~~L~~L~l~~n------------------------~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~ 370 (562)
T 3a79_B 318 -LFSKEALYSVFAEMNIKMLSISDT------------------------PFIHMV--CPPSPSSFTFLNFTQNVFTDSVF 370 (562)
T ss_dssp -SSCHHHHHHHHHTCCCSEEEEESS------------------------CCCCCC--CCSSCCCCCEEECCSSCCCTTTT
T ss_pred -ecChhhhhhhhccCcceEEEccCC------------------------Cccccc--CccCCCCceEEECCCCccccchh
Confidence 22211111 1133444444444 443211 11455566666666666665556
Q ss_pred hhhhcCCCCCEEEcCCCcCccc--CCcCccCCCCCCEEECCCCcccc-cCCccccCcCCCCEEEccCCcCccCCchhHHh
Q 043943 486 MELGRLSSLNKLILNKNQLFGS--LPPEIGTLTELELLDLSENRLSN-AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEK 562 (775)
Q Consensus 486 ~~l~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 562 (775)
..+..+++|++|++++|++++. +|..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++.+|..+.
T Consensus 371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~- 449 (562)
T 3a79_B 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP- 449 (562)
T ss_dssp TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-
T ss_pred hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-
Confidence 6666666666666666666542 23456666777777777777766 3333466777777777777777765555433
Q ss_pred hhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCC
Q 043943 563 LQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSK 633 (775)
Q Consensus 563 l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~ 633 (775)
++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|++.|.||..+
T Consensus 450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 37888888888888 677777789999999999999996544458899999999999999999887543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=383.43 Aligned_cols=454 Identities=20% Similarity=0.178 Sum_probs=224.5
Q ss_pred EEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCC
Q 043943 61 VGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYS 140 (775)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~ 140 (775)
+.++++++++.+ +| ..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip-~~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VP-KDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CC-TTS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CC-CCC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 566777776664 44 222 26677777777777766666677777777777777777766666677777777777777
Q ss_pred ccccccCcccccCCCCCCEEEcccCcCccc-CCcccCCCCCCCEEeccCCcCcccCCcccCCCCCc--cEEEcccccC--
Q 043943 141 NCLNGSIPQSLGNLSKQSLLSLYNNSLSGY-IPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNL--VTLHLFNNSL-- 215 (775)
Q Consensus 141 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L--~~L~l~~n~l-- 215 (775)
|.++ .+|.. .+++|++|++++|.+.+. .|..|.++++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 7766 44444 666667777766666653 345666666666666666665532 23333333 6666666665
Q ss_pred ccccCccCCCCC--CCCEEEcccccccccCCc-cccCCCCCcEEEccccc-----CCCCCCccccCCCCCCEEEcccCcc
Q 043943 216 SGFIPSTLGKLK--CLSNLNMSMNHLSGAIPS-SIGNVRNLRSLFLYSNE-----LSGSIPKEIGNLRSLSNLDLSINRL 287 (775)
Q Consensus 216 ~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~-----~~~~~~~~l~~l~~L~~L~l~~n~~ 287 (775)
++..|..+..+. .+ .++++.|.+.+.++. .+..+++|+.+++++|. +.+ ....+..+++|+.|+++++.+
T Consensus 184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEE
T ss_pred cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcC
Confidence 555555444433 11 334444444433222 23344455555555442 110 111233344444444444333
Q ss_pred cccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcC-----CCCCcCcEEEccCCcCCCC
Q 043943 288 NGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSI-----GNLRNLRLLYLYRNELSGS 362 (775)
Q Consensus 288 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~ 362 (775)
.+.. +.+ ++.. ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .
T Consensus 262 ~~~~-------------------~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 262 TWKC-------------------SVK-LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp CHHH-------------------HHH-HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred cHHH-------------------HHH-HHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 2210 000 0011 112245555555555554444443 3444444444444444 2
Q ss_pred ch-hhccC---CCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCcccee--ec
Q 043943 363 IP-QAIGN---LVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHG--QI 436 (775)
Q Consensus 363 ~~-~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~ 436 (775)
+| ..+.. ..+|+.|++++|.+.... ....+++|+.|++++|.+.+..+..+ ..+++|++|++++|++++ .+
T Consensus 319 ~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~ 395 (562)
T 3a79_B 319 FSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKV 395 (562)
T ss_dssp SCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHH
T ss_pred cChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccc
Confidence 22 11111 134555555555443211 01334444444444444444333332 344444444444444443 12
Q ss_pred CcCcCCCCCCCEEEcccCcccccCCc-cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCC
Q 043943 437 SSDWGRFPQLGTLDFSVNNITGSIPP-EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTL 515 (775)
Q Consensus 437 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 515 (775)
|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+
T Consensus 396 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSS
T ss_pred hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCC
Confidence 23344555555555555555542332 344555555555555555544443322 45555555555554 344444455
Q ss_pred CCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccC
Q 043943 516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHK 555 (775)
Q Consensus 516 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 555 (775)
++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 473 ~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 5555555555555533222355555555555555555443
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-40 Score=344.55 Aligned_cols=293 Identities=30% Similarity=0.512 Sum_probs=225.7
Q ss_pred CCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCccc
Q 043943 6 SSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCA--WSGIYCNHD---ERVVGINLTTTSLNG--TLDEFS 78 (775)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~ 78 (775)
+.|.++|++||++||+++.+ |. .+.+|. .+.+||. |.||.|+.. ++|+.++++++.+.+ .++ ..
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~-~~-~l~~W~------~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~ 71 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGN-PT-TLSSWL------PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SS 71 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTC-CG-GGTTCC------TTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GG
T ss_pred CCCCHHHHHHHHHHHHhcCC-cc-cccCCC------CCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hh
Confidence 35899999999999999964 54 688997 3568998 999999854 789999999999988 777 67
Q ss_pred cCCCCCCCEEECCC-CCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943 79 FSSFPDLLFLNLFN-NELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157 (775)
Q Consensus 79 ~~~l~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 157 (775)
+.++++|++|++++ |.+.+.+|..|.++++|++|++++|.+.+.+|..|..+++|++|++++|.+++.+|..+.++++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 88888888888885 88888888888888888888888888887888888888888888888888888888888888888
Q ss_pred CEEEcccCcCcccCCcccCCCC-CCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943 158 SLLSLYNNSLSGYIPPVIGNLI-SLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236 (775)
Q Consensus 158 ~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (775)
++|++++|.+++.+|..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+++..+..+..+++|++|++++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 8888888888877777777776 778888877777777777776665 77777777777776677777777777777777
Q ss_pred ccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcc
Q 043943 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQ 310 (775)
Q Consensus 237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 310 (775)
|.+.+..|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++.+|.
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 776654444 556666666666666666666666666666666666666666655554 555666666666655
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.2e-39 Score=354.78 Aligned_cols=382 Identities=23% Similarity=0.220 Sum_probs=294.1
Q ss_pred CEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccccc-CCccCCCCCCCCeeeccC
Q 043943 230 SNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV-IPSSIGNSNNLSILYLYS 308 (775)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~ 308 (775)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+. .+..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45667777666 4554 2 26788888888888877788888888888888888888644 356788888888888888
Q ss_pred ccccCCCCccCCCCCCCCeeeCcCCcCcCccCC--cCCCCCcCcEEEccCCcCCCCchhh-ccCCCCCcEEEeccceecc
Q 043943 309 NQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPS--SIGNLRNLRLLYLYRNELSGSIPQA-IGNLVELVSLLLGFNYFRG 385 (775)
Q Consensus 309 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 385 (775)
|.+++..|..+.++++|++|++++|++++..+. .+..+++|++|++++|.+.+..|.. +.++++|+.|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 888877788888888888888888888874443 3778888888888888888776655 7788888888888888887
Q ss_pred cCCccCcCC--CcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCcc
Q 043943 386 PIPKNFKNL--TNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE 463 (775)
Q Consensus 386 ~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 463 (775)
..+..+..+ .+|+.+++++|.+.+..+..+.. .....+..+++|++|++++|.+++..|..
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhccc-----------------cccccccccceeeeEecCCCcccccchhh
Confidence 777666555 45666666666655433221100 00011223455666666666555555444
Q ss_pred ccC---CCCCcEEEccCCCccC----------cCChhhhc--CCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcc
Q 043943 464 IGN---SSKLQVLNLSSNHIGG----------KIPMELGR--LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRL 528 (775)
Q Consensus 464 ~~~---~~~L~~L~Ls~n~l~~----------~~~~~l~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l 528 (775)
+.. .++|+.|++++|...+ ..+..+.. .++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 432 2566666666654332 22222322 37899999999999999999999999999999999999
Q ss_pred cccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCcc
Q 043943 529 SNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNC 608 (775)
Q Consensus 529 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 608 (775)
++..|..|..+++|++|+|++|.+++..|..+..++ +|++|++++|++++..|..|..+++|++|++++|++++..+..
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD-KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcc-cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence 999999999999999999999999988888998888 9999999999999999999999999999999999999988888
Q ss_pred ccCCCCCCEEeCCCCcccccCCCCC
Q 043943 609 FEDMHGLSSIDISYNRLQGPVPFSK 633 (775)
Q Consensus 609 l~~l~~L~~l~ls~n~l~~~~p~~~ 633 (775)
+..+++|+.|++++|+++|.+|...
T Consensus 391 ~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hccCCcccEEEccCCCcccCCCcch
Confidence 9999999999999999999999543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.4e-39 Score=351.06 Aligned_cols=390 Identities=21% Similarity=0.216 Sum_probs=260.2
Q ss_pred CEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccC-CcccCCCCCccEEEccc
Q 043943 134 SELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSV-PFFLGNLTNLVTLHLFN 212 (775)
Q Consensus 134 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~ 212 (775)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777666 4454 2 267788888888877777777777778888888777765433 45677777777777777
Q ss_pred ccCccccCccCCCCCCCCEEEcccccccccCCcc--ccCCCCCcEEEcccccCCCCCCcc-ccCCCCCCEEEcccCcccc
Q 043943 213 NSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSS--IGNVRNLRSLFLYSNELSGSIPKE-IGNLRSLSNLDLSINRLNG 289 (775)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~ 289 (775)
|.+++..|..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 7777777777777777777777777776544333 666777777777777776665654 5667777777777777766
Q ss_pred cCCccCCCC--CCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhc
Q 043943 290 VIPSSIGNS--NNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAI 367 (775)
Q Consensus 290 ~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (775)
..+..+..+ .+|+.|++++|.+.+..+..+. ......+..+++|++|++++|.+.+..|..+
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----------------WEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----------------HHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred cChhhhhccccccccccccccCcccccchhhcc----------------ccccccccccceeeeEecCCCcccccchhhh
Confidence 666555544 4556666666655543222111 0001112344566677777776666555544
Q ss_pred cCC---CCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhh-ccCCCCcEEeCCCccceeecCcCcCCC
Q 043943 368 GNL---VELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFV-GTYPTLSFLDLSHNNFHGQISSDWGRF 443 (775)
Q Consensus 368 ~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~ 443 (775)
... ++|+.+++++|...+.... ...++.+. ...+. ...++|++|++++|.+.+..+..+..+
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 298 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPD-------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF 298 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCC-------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred hccccccceeeEeeccccccccccc-hhhhccCc-------------ccccccccccCceEEEecCccccccchhhcccC
Confidence 433 5666666666654432110 01111111 11110 124678888888888888778888888
Q ss_pred CCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEEC
Q 043943 444 PQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDL 523 (775)
Q Consensus 444 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 523 (775)
++|++|++++|.+++..|..|..+++|++|++++|.+.+..|..+..+++|++|+|++|++++..|..+..+++|++|++
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEEC
Confidence 88888888888888777777888888888888888887777777778888888888888887777777778888888888
Q ss_pred CCCcccccCCccccCcCCCCEEEccCCcCccCCc
Q 043943 524 SENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIP 557 (775)
Q Consensus 524 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 557 (775)
++|++++..+..+..+++|++|+|++|++++..|
T Consensus 379 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888877666667777778888888887777665
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.8e-39 Score=351.32 Aligned_cols=424 Identities=25% Similarity=0.276 Sum_probs=188.8
Q ss_pred CCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEE
Q 043943 82 FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLS 161 (775)
Q Consensus 82 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 161 (775)
.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+++++..|.. .++++|+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 34555555555555 45555555555555555555555555555555555444444333321 2345666
Q ss_pred cccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc
Q 043943 162 LYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241 (775)
Q Consensus 162 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (775)
+++|.+++.. .. .++|++|++++|.+++ +|.. +++|++|++++|.+++. +.. .++|++|++++|.+++
T Consensus 78 l~~~~l~~lp-~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 78 LNNLGLSSLP-EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp CTTSCCSCCC-SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS
T ss_pred ecCCccccCC-CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC
Confidence 6666555421 11 2456666666666654 3432 25566666666665542 111 1456666666666653
Q ss_pred cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN 321 (775)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (775)
+| .++.+++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 44 35666666666666666553 33322 356666666666554 23 35555666666666665553 2221
Q ss_pred CCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCccccee
Q 043943 322 LKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVR 401 (775)
Q Consensus 322 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 401 (775)
.++|++|++++|.+. .+|. +..+++|++|++++|.+++ +|. .. ++|+.|+
T Consensus 214 ~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~------------------------~~L~~L~ 263 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LP------------------------PSLEALN 263 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CC------------------------TTCCEEE
T ss_pred cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cc------------------------cccCEEE
Confidence 135555555555555 2332 4555555555555555543 221 12 3445555
Q ss_pred ccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCcc
Q 043943 402 MNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIG 481 (775)
Q Consensus 402 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 481 (775)
+++|.+.+ ++. ..++|++|++++|++++... ..++|++|++++|.+++. +. ..++|++|++++|++.
T Consensus 264 l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 264 VRDNYLTD-LPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLI 330 (454)
T ss_dssp CCSSCCSC-CCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCS
T ss_pred CCCCcccc-cCc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCccc
Confidence 55554443 111 12566667777666665211 125677777777776642 11 1247778888887777
Q ss_pred CcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccc--cCCccccCcCCCCEEEccCCcCccCCchh
Q 043943 482 GKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSN--AIPGSLGNLLKVHYLNLSNNEFSHKIPTQ 559 (775)
Q Consensus 482 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 559 (775)
+ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|..+.. ++.|.+.+.+|..
T Consensus 331 ~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 331 E-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL 394 (454)
T ss_dssp C-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------
T ss_pred c-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc
Confidence 5 4433 477888888888777 4554 46778888888888876 45544432 2345666666653
Q ss_pred HHhhhccccEEECcCCcCcc--cCCccccCCCCCcEEeCCCCcCcccCCcccc
Q 043943 560 FEKLQLQLSELDLSQNFLEG--EIPSQICNMESLVKLNLSYNQLSGFIPNCFE 610 (775)
Q Consensus 560 ~~~l~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~ 610 (775)
.. +|+.|++++|.+++ .+|. +++.|.+.+|.+.+.++.+..
T Consensus 395 ---~~-~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 395 ---PQ-NLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp -----------------------------------------------------
T ss_pred ---cC-cCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHH
Confidence 23 78888888888886 5664 355667778877776655443
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.4e-38 Score=341.21 Aligned_cols=412 Identities=23% Similarity=0.256 Sum_probs=185.6
Q ss_pred CCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCC-------------CEEeCcCCCCCCCCc
Q 043943 58 ERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKL-------------QYLDLSANKLSGKIP 124 (775)
Q Consensus 58 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L-------------~~L~ls~n~~~~~~p 124 (775)
.+++.++++++.+ |.+| ..++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 5788899999999 8998 789999999999999999999999999998876 666666666553 23
Q ss_pred hhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCC
Q 043943 125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTN 204 (775)
Q Consensus 125 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 204 (775)
. -.++|++|++++|.+++ +|.. +++|++|++++|.+++... . .++|++|++++|.+++ +| .++++++
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~-lp-~~~~l~~ 154 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEK-LP-ELQNSSF 154 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCC-Cc-ccCCCCC
Confidence 2 12456666666666654 3432 2455555555555543211 0 1345555555555443 33 2445555
Q ss_pred ccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEccc
Q 043943 205 LVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSI 284 (775)
Q Consensus 205 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 284 (775)
|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|++|++++
T Consensus 155 L~~L~l~~N~l~~-------------------------lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-------------------------LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CCEEECCSSCCSC-------------------------CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcc-------------------------cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 5555555555443 22221 244455555554443 23 344455555555555
Q ss_pred CcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCch
Q 043943 285 NRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIP 364 (775)
Q Consensus 285 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (775)
|.+++ +|.. .++|++|++++|.++ .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|.+.+ +|
T Consensus 205 N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~ 273 (454)
T 1jl5_A 205 NSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LP 273 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CC
T ss_pred CcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cC
Confidence 54443 2211 134555555555554 333 24555555555555555543 2221 2455555555555553 22
Q ss_pred hhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCC
Q 043943 365 QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFP 444 (775)
Q Consensus 365 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 444 (775)
.. .++|+.|++++|.+++. +. + .++|+.|++++|.+.+.. ...++|++|++++|++.+ +|.. ++
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l-~~-~--~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~ 337 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGL-SE-L--PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PP 337 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEE-SC-C--CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred cc---cCcCCEEECcCCccCcc-cC-c--CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CC
Confidence 21 24555555555555541 11 0 145666666666665421 112477888888887775 3432 57
Q ss_pred CCCEEEcccCcccccCCccccCCCCCcEEEccCCCccC--cCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEE
Q 043943 445 QLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGG--KIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLD 522 (775)
Q Consensus 445 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 522 (775)
+|++|++++|.+++ +|. .+++|++|++++|++.+ .+|..+.. ++.|.+.+.+|.. +++|+.|+
T Consensus 338 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ 402 (454)
T 1jl5_A 338 RLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLH 402 (454)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------
T ss_pred cCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEE
Confidence 78888888888874 554 46788888888888887 55554432 2345666666652 57899999
Q ss_pred CCCCcccc--cCCccccCcCCCCEEEccCCcCccCCchhHHhh
Q 043943 523 LSENRLSN--AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL 563 (775)
Q Consensus 523 ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 563 (775)
+++|++++ .+| .+++.|.+.+|.+.+.++......
T Consensus 403 ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 403 VETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp -------------------------------------------
T ss_pred CCCCcCCccccch------hhHhheeCcCcccCCccccCHHHh
Confidence 99999886 444 346777888888877766554433
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-36 Score=331.01 Aligned_cols=363 Identities=18% Similarity=0.215 Sum_probs=191.7
Q ss_pred cccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCccc
Q 043943 96 FGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVI 175 (775)
Q Consensus 96 ~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 175 (775)
.+..+..+.++++|++|++++|.+++. | .+..+++|++|++++|.+++. | +..+++|++|++++|.+++. + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 334455677778888888888877753 4 577778888888888877753 3 67777777777777777664 2 6
Q ss_pred CCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcE
Q 043943 176 GNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRS 255 (775)
Q Consensus 176 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 255 (775)
..+++|++|++++|.+++. + ++.+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 6667777777777766642 2 56666666666666666653 2555666666666666433333 2445555555
Q ss_pred EEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcC
Q 043943 256 LFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNL 335 (775)
Q Consensus 256 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 335 (775)
|++++|.+++ +| +..+++|++|++++|.+++. .+..+++|+.|++++|++++ +| +.
T Consensus 175 L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~--------------- 230 (457)
T 3bz5_A 175 LDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VT--------------- 230 (457)
T ss_dssp EECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT---------------
T ss_pred EECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--cc---------------
Confidence 5555555553 22 44555555555555555433 24444444444444444443 22 34
Q ss_pred cCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhh
Q 043943 336 TGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAF 415 (775)
Q Consensus 336 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 415 (775)
.+++|+.|++++|.+++.. +..+++|+.++++.| +|+.+++++|.+.+.+|.
T Consensus 231 ---------~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~-- 282 (457)
T 3bz5_A 231 ---------PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA-- 282 (457)
T ss_dssp ---------TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--
T ss_pred ---------ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--
Confidence 4444444444444444321 223334444443332 233444444444443331
Q ss_pred hccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCC
Q 043943 416 VGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLN 495 (775)
Q Consensus 416 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 495 (775)
+.+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +..+++|+
T Consensus 283 -~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~ 342 (457)
T 3bz5_A 283 -EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLK 342 (457)
T ss_dssp -TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCS
T ss_pred -cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCc
Confidence 3445555555555554444432 2233333333322 4555555555555542 2 45555555
Q ss_pred EEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchh
Q 043943 496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQ 559 (775)
Q Consensus 496 ~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 559 (775)
.|++++|++++ ++.|..|++++|.+.|. ..+..|..+++++|+++|.+|..
T Consensus 343 ~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 343 SLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred EEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 55555555543 12344444555555443 12334444455555555555443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-36 Score=327.95 Aligned_cols=359 Identities=21% Similarity=0.201 Sum_probs=275.3
Q ss_pred cccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943 77 FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK 156 (775)
Q Consensus 77 ~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 156 (775)
..+.++++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + +.++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 4677899999999999999975 5 699999999999999999964 4 89999999999999999864 3 899999
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943 157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236 (775)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (775)
|++|++++|.+++. + +..+++|++|++++|.+++. + ++.+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 99999999999985 3 89999999999999999874 3 789999999999999655554 588999999999999
Q ss_pred ccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCC
Q 043943 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIP 316 (775)
Q Consensus 237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 316 (775)
|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|++++..
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 99986 44 88999999999999999865 38899999999999999997 45 788999999999999998753
Q ss_pred ccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCc
Q 043943 317 KEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTN 396 (775)
Q Consensus 317 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 396 (775)
+..+++|+.|+++.| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~------- 304 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC------- 304 (457)
T ss_dssp --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC-------
T ss_pred --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc-------
Confidence 456778888887664 34556677776665554 23445555555555544333331
Q ss_pred ccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEcc
Q 043943 397 LVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLS 476 (775)
Q Consensus 397 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 476 (775)
..++|+.|++++| ++|++|++++|++++. + +..+++|+.|+++
T Consensus 305 ---------------------~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 305 ---------------------QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCV 347 (457)
T ss_dssp ---------------------TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECC
T ss_pred ---------------------CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECC
Confidence 1234444443332 5666666666666653 2 6667777777777
Q ss_pred CCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccc
Q 043943 477 SNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSL 536 (775)
Q Consensus 477 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 536 (775)
+|++++ ++.|..|++++|.+.|. ..+..|..+++++|+++|.+|..+
T Consensus 348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 777664 24455566777776654 234556667777777777776644
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=333.49 Aligned_cols=345 Identities=22% Similarity=0.226 Sum_probs=249.3
Q ss_pred CEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCC
Q 043943 278 SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRN 357 (775)
Q Consensus 278 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 357 (775)
+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45566666555 334333 245666666666666555556666666666666666666555556666666666666666
Q ss_pred cCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecC
Q 043943 358 ELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQIS 437 (775)
Q Consensus 358 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 437 (775)
.+.+..+..+.++++|+.|++++| .+.+..+..+ ..+++|++|++++|.+.+..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n------------------------~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISEN------------------------KIVILLDYMF-QDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTS------------------------CCCEECTTTT-TTCTTCCEEEECCTTCCEECT
T ss_pred cCCccCcccccCCCCCCEEECCCC------------------------ccccCChhHc-cccccCCEEECCCCccceeCh
Confidence 555443344444555555555544 4444444333 556677777777777777777
Q ss_pred cCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCC
Q 043943 438 SDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTE 517 (775)
Q Consensus 438 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 517 (775)
..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++.......+
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 77888888888888888888766667888888888888888888777777888888888888888877777776666678
Q ss_pred CCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCC
Q 043943 518 LELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLS 597 (775)
Q Consensus 518 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 597 (775)
|++|++++|.++...+..+..+++|+.|+|++|.+++..+..+..++ +|+.|+|++|++++..|..|..+++|+.|+++
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT-TCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc-cCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 88888888888866556788888888888888888877777777777 89999999999988888899999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCC
Q 043943 598 YNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCG 651 (775)
Q Consensus 598 ~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~ 651 (775)
+|++++..+..|..+++|+.|++++|++.|.++..+.+.......+.++...|.
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~ 358 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCA 358 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEE
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeC
Confidence 999998888888888999999999999998877554444433345566666665
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-35 Score=323.20 Aligned_cols=346 Identities=28% Similarity=0.403 Sum_probs=202.4
Q ss_pred CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943 81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160 (775)
Q Consensus 81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 160 (775)
.+++++.|+++++.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 34567777777776653 33 36667777777777777764433 6777777777777777764433 6777777777
Q ss_pred EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943 161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240 (775)
Q Consensus 161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (775)
++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+. ..+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 777776665533 6667777777777776653 22 36666777777765 333332 22666667777777666665
Q ss_pred ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
+. ..+..+++|++|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 32 235666666666666666664433 55566666666666666543 235555666666666666554332 55
Q ss_pred CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV 400 (775)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 400 (775)
.+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~--------- 327 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V--------- 327 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--G---------
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--h---------
Confidence 55666666666665554433 4555556666665555554322 3444455555555444443322 2
Q ss_pred eccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCc
Q 043943 401 RMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHI 480 (775)
Q Consensus 401 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 480 (775)
..+++|++|++++|.+.+. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+
T Consensus 328 ----------------~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 328 ----------------SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp ----------------GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred ----------------ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 3445555555555555443 245555666666666666655444 55566666666666655
Q ss_pred cC
Q 043943 481 GG 482 (775)
Q Consensus 481 ~~ 482 (775)
++
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-35 Score=322.87 Aligned_cols=347 Identities=28% Similarity=0.399 Sum_probs=246.7
Q ss_pred cCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCE
Q 043943 104 SQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLST 183 (775)
Q Consensus 104 ~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 183 (775)
..+++|++|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346788899999888874 55 37788899999999998885543 8888888888888888876655 788888888
Q ss_pred EeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccC
Q 043943 184 LDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL 263 (775)
Q Consensus 184 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (775)
|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++. +.+.+.. .+..+++|+.|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 8888887775433 77788888888888877653 247777777777775 3333222 266677777777777766
Q ss_pred CCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcC
Q 043943 264 SGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSI 343 (775)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 343 (775)
++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 533 235666677777777766665433 45566666666666665532 234555555555555555554433 4
Q ss_pred CCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCc
Q 043943 344 GNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLS 423 (775)
Q Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 423 (775)
..+++|+.|++++|.+.+. .+ +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 262 ~~l~~L~~L~l~~n~l~~~------------------------~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~ 312 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNI------------------------SP--LAGLTALTNLELNENQLEDISP---ISNLKNLT 312 (466)
T ss_dssp TTCTTCSEEECCSSCCCCC------------------------GG--GTTCTTCSEEECCSSCCSCCGG---GGGCTTCS
T ss_pred hcCCCCCEEECCCCccCcc------------------------cc--ccCCCccCeEEcCCCcccCchh---hcCCCCCC
Confidence 4555555555555555432 22 4445555555555555554433 36788999
Q ss_pred EEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCc
Q 043943 424 FLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ 503 (775)
Q Consensus 424 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 503 (775)
.|++++|++.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++.+..| +..+++|+.|++++|+
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 99999999987765 78899999999999999875 578999999999999999998877 8899999999999999
Q ss_pred Ccc
Q 043943 504 LFG 506 (775)
Q Consensus 504 ~~~ 506 (775)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 986
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-35 Score=322.14 Aligned_cols=303 Identities=20% Similarity=0.181 Sum_probs=254.3
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 58999999999999888889999999999999999999888889999999999999999998666667889999999999
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA 242 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 242 (775)
++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999988888899999999999999988887788888899999999999988877777788889999999999888887
Q ss_pred CCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943 243 IPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL 322 (775)
Q Consensus 243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 322 (775)
.+..+..+++|+.|++++|...+.+|.......+|++|++++|.++...+..+..+++|+.|++++|.+++..+..+..+
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 77788888888888888887777777666666788888888888886555667788888888888888887777777788
Q ss_pred CCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecc
Q 043943 323 KCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRG 385 (775)
Q Consensus 323 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 385 (775)
++|++|++++|++.+..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 272 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 888888888888887777777788888888888888776666666777777777777776653
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-34 Score=306.69 Aligned_cols=316 Identities=20% Similarity=0.153 Sum_probs=255.7
Q ss_pred CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943 81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160 (775)
Q Consensus 81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 160 (775)
.++++++|+++++.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 56899999999999886666668899999999999999987777789999999999999999998888889999999999
Q ss_pred EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943 161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240 (775)
Q Consensus 161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (775)
++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|++|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999999977777788999999999999999887788888999999999999998865 3566788999999998876
Q ss_pred ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
+. ...++|+.|++++|.++.. |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+.
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 42 3446789999999888743 332 357889999999988754 5678888889999988888887788888
Q ss_pred CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV 400 (775)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 400 (775)
.+++|++|++++|++++. +..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++... +..+++|+.|
T Consensus 270 ~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L 344 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 344 (390)
T ss_dssp TCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred ccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEE
Confidence 888888888888888764 555677888888888888887 45666777788888888888876542 5556667777
Q ss_pred eccccccccccchh
Q 043943 401 RMNQNNLSGNISEA 414 (775)
Q Consensus 401 ~l~~n~~~~~~~~~ 414 (775)
++++|.+.......
T Consensus 345 ~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 345 TLSHNDWDCNSLRA 358 (390)
T ss_dssp ECCSSCEEHHHHHH
T ss_pred EcCCCCccchhHHH
Confidence 77776665543333
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-33 Score=317.33 Aligned_cols=311 Identities=19% Similarity=0.156 Sum_probs=244.8
Q ss_pred CCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943 81 SFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160 (775)
Q Consensus 81 ~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 160 (775)
.+++++.|++++|.+....+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999887766778889999999999999998888889999999999999999998888888999999999
Q ss_pred EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943 161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240 (775)
Q Consensus 161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (775)
++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999998777777889999999999999988888888888999999999999888653 456788888888888776
Q ss_pred ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
+ +....+|+.|++++|.++...+ .+ .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 4 2344678888888888764322 22 36788888888888753 5677788888888888888877777888
Q ss_pred CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccce
Q 043943 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRV 400 (775)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 400 (775)
.+++|+.|++++|.+++. |..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.. +..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence 888888888888888763 555667788888888888877 45666677777777777777766432 3444555555
Q ss_pred ecccccccc
Q 043943 401 RMNQNNLSG 409 (775)
Q Consensus 401 ~l~~n~~~~ 409 (775)
++++|.+.+
T Consensus 351 ~l~~N~~~~ 359 (597)
T 3oja_B 351 TLSHNDWDC 359 (597)
T ss_dssp ECCSSCEEH
T ss_pred EeeCCCCCC
Confidence 555555543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.4e-33 Score=296.63 Aligned_cols=334 Identities=19% Similarity=0.196 Sum_probs=231.9
Q ss_pred CCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEE
Q 043943 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLL 352 (775)
Q Consensus 273 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 352 (775)
.+++++.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46889999999999987666667889999999999999988777789999999999999999998888888999999999
Q ss_pred EccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccc
Q 043943 353 YLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432 (775)
Q Consensus 353 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 432 (775)
++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.. ...+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccccc
Confidence 99999988655555788899999999999988877777888888888888888877542 24567788888877776
Q ss_pred eeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCc
Q 043943 433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512 (775)
Q Consensus 433 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 512 (775)
.+. ...++|++|++++|.+... |. ...++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 543 2345677777777776643 22 2235677777777766643 356666667777777776666666666
Q ss_pred cCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCc
Q 043943 513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLV 592 (775)
Q Consensus 513 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 592 (775)
..+++|+.|++++|++++. |..+..+++|++|+|++|+++ .+|..+..++ +|+.|++++|.++
T Consensus 269 ~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-~L~~L~L~~N~i~-------------- 331 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIV-------------- 331 (390)
T ss_dssp TTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCCC--------------
T ss_pred cccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccC-cCCEEECCCCccc--------------
Confidence 6666666666666666643 334455566666666666555 3444444444 5555555555544
Q ss_pred EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCC
Q 043943 593 KLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCG 651 (775)
Q Consensus 593 ~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~ 651 (775)
... +..+++|+.|++++|++.+.... ..+..+....+.+++..|.
T Consensus 332 ----------~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 332 ----------TLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCK 376 (390)
T ss_dssp ----------CCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCC
T ss_pred ----------eeC---chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceec
Confidence 321 34445566666666666553321 2233444444556666665
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.5e-33 Score=313.28 Aligned_cols=335 Identities=20% Similarity=0.200 Sum_probs=236.1
Q ss_pred CCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEE
Q 043943 273 NLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLL 352 (775)
Q Consensus 273 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 352 (775)
.+.+++.+++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36788999999999987777778889999999999999998888889999999999999999998888888999999999
Q ss_pred EccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccc
Q 043943 353 YLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNF 432 (775)
Q Consensus 353 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 432 (775)
++++|.+++..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.. .+.+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcc
Confidence 99999998766666788999999999999998888888888888888888888877643 24567788888877776
Q ss_pred eeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCc
Q 043943 433 HGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEI 512 (775)
Q Consensus 433 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 512 (775)
.+. ...++|+.|++++|.+....+. ..++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..|..+
T Consensus 205 ~~l-----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 205 STL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp SEE-----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence 643 3345677777777776643222 124667777777766642 456666666666666666666666666
Q ss_pred cCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCc
Q 043943 513 GTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLV 592 (775)
Q Consensus 513 ~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 592 (775)
..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.++ .+|..+..++ +|+.|+|++|.+
T Consensus 275 ~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~-~L~~L~L~~N~l--------------- 336 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSI--------------- 336 (597)
T ss_dssp TTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-TCSEEECCSSCC---------------
T ss_pred cCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCC-CCCEEECCCCCC---------------
Confidence 6666666666666666653 344455556666666666555 3444444444 455555555544
Q ss_pred EEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCCCcCCCCCccccCCCcCCCCC
Q 043943 593 KLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFSKAFRDAPAEALQGNRGLCGD 652 (775)
Q Consensus 593 ~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~gn~~lc~~ 652 (775)
++.. +..+++|+.|++++|++.|.++. ..+..+....+.++...|+.
T Consensus 337 ---------~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 337 ---------VTLK---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp ---------CCCC---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred ---------CCcC---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 4331 34455667777777777665432 23445555566777778864
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.4e-32 Score=285.72 Aligned_cols=305 Identities=24% Similarity=0.407 Sum_probs=197.9
Q ss_pred cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCC
Q 043943 79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158 (775)
Q Consensus 79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 158 (775)
+..+++|++|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. ++ .+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 34567778888888777643 3 377778888888888877743 33 7778888888888887764 33 577777788
Q ss_pred EEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc
Q 043943 159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH 238 (775)
Q Consensus 159 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 238 (775)
+|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 88887777775533 6777777777777775443333 36777777777777777665433 6677777777777777
Q ss_pred ccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCcc
Q 043943 239 LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKE 318 (775)
Q Consensus 239 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 318 (775)
+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 664322 6667777777777777764433 6667777777777777764433 66667777777777766643 34
Q ss_pred CCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCccc
Q 043943 319 IGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLV 398 (775)
Q Consensus 319 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 398 (775)
+..+++|++|++++|++++. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 66666677777777666653 235566666666666666666555666666666666666665554333 33444444
Q ss_pred ceeccccc
Q 043943 399 RVRMNQNN 406 (775)
Q Consensus 399 ~L~l~~n~ 406 (775)
.|++++|.
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 44444443
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.6e-31 Score=281.99 Aligned_cols=307 Identities=25% Similarity=0.397 Sum_probs=204.3
Q ss_pred ccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCc
Q 043943 271 IGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR 350 (775)
Q Consensus 271 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 350 (775)
+..+++|++|++++|.+... + .+..+++|++|++++|.+++.. . +..+++|++|++++|.++.. + .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~~-~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITDI-S-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCS
T ss_pred chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccCc-h-HHcCCCcCC
Confidence 45678888888888887743 3 3677888888888888877543 2 77778888888888877753 2 467777777
Q ss_pred EEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCc
Q 043943 351 LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHN 430 (775)
Q Consensus 351 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 430 (775)
+|++++|.+.+..+ +..+++|+.|++++|.....++ .+ ..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~-------------------------~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PL-------------------------SNMTGLNYLTVTES 165 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GG-------------------------TTCTTCCEEECCSS
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-ch-------------------------hhCCCCcEEEecCC
Confidence 77777777764332 5666666666666664332222 13 44555555555555
Q ss_pred cceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCc
Q 043943 431 NFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPP 510 (775)
Q Consensus 431 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 510 (775)
.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+
T Consensus 166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 5543322 5556666666666666654322 5666677777777776665433 6666777777777777764322
Q ss_pred CccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCC
Q 043943 511 EIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMES 590 (775)
Q Consensus 511 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 590 (775)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..++ +|+.|++++|.+++..|..++.+++
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCC-CCCEEECcCCcCCCcChhHhhcccc
Confidence 66777777777777777653 3566777777777777777653 3455555 7778888888777777777778888
Q ss_pred CcEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 043943 591 LVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626 (775)
Q Consensus 591 L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~ 626 (775)
|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888777666 677788888888888764
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.4e-33 Score=289.82 Aligned_cols=283 Identities=21% Similarity=0.270 Sum_probs=166.1
Q ss_pred CCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCC---------CCCEEEEEcCCCCCccccCc
Q 043943 6 SSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNH---------DERVVGINLTTTSLNGTLDE 76 (775)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~---------~~~v~~l~l~~~~~~~~~~~ 76 (775)
+.+..+|++||++||+++..++.+.+.+|... .....++|.|.|+.|.. ..+|+.++|+++.+. .+|
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~--~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp- 97 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQA--NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP- 97 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHH--TTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC-
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhccc--ccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC-
Confidence 44557899999999999977776667778310 01356889999999952 245555555555554 344
Q ss_pred cccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943 77 FSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK 156 (775)
Q Consensus 77 ~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 156 (775)
..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+...
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-- 173 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST-- 173 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--
Confidence 33444555555555555554 44444555555555555555554 444445555555555555544444444433320
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc
Q 043943 157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236 (775)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (775)
..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++
T Consensus 174 -------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp -------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred -------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence 00011223566666666666655 455556666666666666666664 344466666666666666
Q ss_pred ccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccc
Q 043943 237 NHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311 (775)
Q Consensus 237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 311 (775)
|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666666655443
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-32 Score=282.41 Aligned_cols=252 Identities=25% Similarity=0.455 Sum_probs=196.7
Q ss_pred ccceecccccccc--ccchhhhccCCCCcEEeCCC-ccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 043943 397 LVRVRMNQNNLSG--NISEAFVGTYPTLSFLDLSH-NNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVL 473 (775)
Q Consensus 397 L~~L~l~~n~~~~--~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 473 (775)
++.|++++|.+.+ .++..+ ..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4444444444444 344433 5566666666663 66666677777777777777777777777777777788888888
Q ss_pred EccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCC-CCCEEECCCCcccccCCccccCcCCCCEEEccCCcC
Q 043943 474 NLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLT-ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552 (775)
Q Consensus 474 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 552 (775)
++++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|.+++.+|..+..+. |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 8888888777777788888888888888888777787777777 788888888888877787777776 88888888888
Q ss_pred ccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC
Q 043943 553 SHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632 (775)
Q Consensus 553 ~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 632 (775)
++..|..+..++ +|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 210 ~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 210 EGDASVLFGSDK-NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCGGGCCTTS-CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cCcCCHHHhcCC-CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 887787777777 888888888888866665 778889999999999999889998999999999999999999989887
Q ss_pred CcCCCCCccccCCCcCCCCC
Q 043943 633 KAFRDAPAEALQGNRGLCGD 652 (775)
Q Consensus 633 ~~~~~~~~~~~~gn~~lc~~ 652 (775)
..+..+....+.+|+.+|+.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp TTGGGSCGGGTCSSSEEEST
T ss_pred ccccccChHHhcCCCCccCC
Confidence 77777888888899999984
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.1e-30 Score=268.95 Aligned_cols=223 Identities=24% Similarity=0.326 Sum_probs=121.9
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|++++|.+++..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 56777777777777666666777777777777777777666777777777777777777766 3444433 56666666
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcc--cCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIG--SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (775)
++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.. |..+. ++|++|++++|.+.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCC
Confidence 6666665555556666666666666665532 3344455555555555555555432 22221 44444444444444
Q ss_pred ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc
Q 043943 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312 (775)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 312 (775)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.++..+++|++|++++|.++
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 444444444444444444444444333333444444444444444444 23333334444444444444443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.8e-30 Score=270.31 Aligned_cols=286 Identities=24% Similarity=0.283 Sum_probs=148.2
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY 163 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 163 (775)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3455555555544 333333 2455555555555554444455555555555555555554445555555555555555
Q ss_pred cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCc--cccCccCCCCCCCCEEEcccccccc
Q 043943 164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLS--GFIPSTLGKLKCLSNLNMSMNHLSG 241 (775)
Q Consensus 164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (775)
+|.++.. |..+. ++|++|++++|.+....+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 5555432 22222 45555555555555444444555555555555555553 2444455555 55666666555553
Q ss_pred cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN 321 (775)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (775)
+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 333332 45556666666655555555555666666666666665555555555556666666666555 44555555
Q ss_pred CCCCCeeeCcCCcCcCccCCcCCC------CCcCcEEEccCCcCC--CCchhhccCCCCCcEEEecc
Q 043943 322 LKCLFDLELSMNNLTGVIPSSIGN------LRNLRLLYLYRNELS--GSIPQAIGNLVELVSLLLGF 380 (775)
Q Consensus 322 l~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~ 380 (775)
+++|++|++++|++++..+..|.. .+.|+.|++++|.+. +..|..+..+++|+.+++++
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 566666666666655544444432 234555555555544 23334444444444444443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.6e-30 Score=268.06 Aligned_cols=267 Identities=23% Similarity=0.284 Sum_probs=201.6
Q ss_pred CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL 186 (775)
Q Consensus 107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 186 (775)
.+|++++++++.+. .+|..+ .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 36899999999888 567655 368999999999998777788999999999999999999888888999999999999
Q ss_pred cCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc--cCCccccCCCCCcEEEcccccCC
Q 043943 187 SLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG--AIPSSIGNVRNLRSLFLYSNELS 264 (775)
Q Consensus 187 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~ 264 (775)
++|.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+.. ..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 999887 4554443 788999999998887777778888888888888888853 566667766 7888888888877
Q ss_pred CCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCC
Q 043943 265 GSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIG 344 (775)
Q Consensus 265 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 344 (775)
+ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 4 454443 67777888888777776677777777777777777777666666777777777777777777 4566667
Q ss_pred CCCcCcEEEccCCcCCCCchhhccCC------CCCcEEEeccceec
Q 043943 345 NLRNLRLLYLYRNELSGSIPQAIGNL------VELVSLLLGFNYFR 384 (775)
Q Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~n~l~ 384 (775)
.+++|+.|++++|.+++..+..+... ..|+.+++.+|.+.
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 77777777777777765544444332 33444444444443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.7e-30 Score=266.08 Aligned_cols=250 Identities=22% Similarity=0.302 Sum_probs=159.8
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY 163 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 163 (775)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6778888887776 3454443 578888888888876666677888888888888888877667777777888888887
Q ss_pred cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCcc--ccCccCCCCCCCCEEEcccccccc
Q 043943 164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSG--FIPSTLGKLKCLSNLNMSMNHLSG 241 (775)
Q Consensus 164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~ 241 (775)
+|.++.. |..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 109 ~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 7777643 33222 567777777777665555566667777777777766642 45556666666666666666665
Q ss_pred cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN 321 (775)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (775)
.+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 2333332 55666666666665555555666666666666666665555555555556666666666555 44445555
Q ss_pred CCCCCeeeCcCCcCcCccCCcC
Q 043943 322 LKCLFDLELSMNNLTGVIPSSI 343 (775)
Q Consensus 322 l~~L~~L~l~~n~l~~~~~~~~ 343 (775)
+++|++|++++|++++..+..|
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSS
T ss_pred CCCcCEEECCCCcCCccChhhc
Confidence 5555555555555554444333
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.4e-33 Score=310.54 Aligned_cols=380 Identities=18% Similarity=0.123 Sum_probs=221.1
Q ss_pred CCCCEEEcccccccccCCcc-ccCCCCCcEEEcccccCCC----CCCccccCCCCCCEEEcccCcccccCCccC-CCCC-
Q 043943 227 KCLSNLNMSMNHLSGAIPSS-IGNVRNLRSLFLYSNELSG----SIPKEIGNLRSLSNLDLSINRLNGVIPSSI-GNSN- 299 (775)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~- 299 (775)
++|++|++++|.++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777766443322 5567777777777777663 234556667777777777777664333222 1233
Q ss_pred ---CCCeeeccCccccC----CCCccCCCCCCCCeeeCcCCcCcCccCCc-----CCCCCcCcEEEccCCcCCCCchhhc
Q 043943 300 ---NLSILYLYSNQLSG----SIPKEIGNLKCLFDLELSMNNLTGVIPSS-----IGNLRNLRLLYLYRNELSGSIPQAI 367 (775)
Q Consensus 300 ---~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (775)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+.. ....++|++|++++|.+++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~- 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP- 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH-
Confidence 56666666666653 23555566666666666666655432211 112345566666655555422111
Q ss_pred cCCCCCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhh----ccCCCCcEEeCCCccceee----cCcC
Q 043943 368 GNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFV----GTYPTLSFLDLSHNNFHGQ----ISSD 439 (775)
Q Consensus 368 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~----~~~~ 439 (775)
++..+..+++|+.|++++|.+.......+. ...++|++|++++|.+++. ++..
T Consensus 162 -------------------l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 162 -------------------LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp -------------------HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred -------------------HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 122233344444444444444333222221 1244666666666666542 3444
Q ss_pred cCCCCCCCEEEcccCcccccC-----CccccCCCCCcEEEccCCCccCc----CChhhhcCCCCCEEEcCCCcCcccCCc
Q 043943 440 WGRFPQLGTLDFSVNNITGSI-----PPEIGNSSKLQVLNLSSNHIGGK----IPMELGRLSSLNKLILNKNQLFGSLPP 510 (775)
Q Consensus 440 ~~~~~~L~~L~l~~n~l~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~~~~~~~~ 510 (775)
+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 555667777777777665432 22233567777777777777653 455566677777777777777544332
Q ss_pred Ccc-----CCCCCCEEECCCCccccc----CCccccCcCCCCEEEccCCcCccCCchhHHhh----hccccEEECcCCcC
Q 043943 511 EIG-----TLTELELLDLSENRLSNA----IPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKL----QLQLSELDLSQNFL 577 (775)
Q Consensus 511 ~~~-----~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l----~~~L~~L~Ls~n~l 577 (775)
.+. ..++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+..+... .++|+.|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 222 235777888888777654 34455666788888888887776655555431 12788888888887
Q ss_pred cc----cCCccccCCCCCcEEeCCCCcCcccCCccc-----cCCCCCCEEeCCCCccc
Q 043943 578 EG----EIPSQICNMESLVKLNLSYNQLSGFIPNCF-----EDMHGLSSIDISYNRLQ 626 (775)
Q Consensus 578 ~~----~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l-----~~l~~L~~l~ls~n~l~ 626 (775)
++ .+|..+..+++|++|++++|++++.....+ .....|+.|++.++.+.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 75 667777778888888888887775422211 12345777777666544
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.8e-34 Score=311.70 Aligned_cols=158 Identities=22% Similarity=0.209 Sum_probs=88.1
Q ss_pred CCCCEEeccCCcCcccCCcc-cCCCCCccEEEcccccCcc----ccCccCCCCCCCCEEEcccccccccCCccc-cCCC-
Q 043943 179 ISLSTLDLSLNQLIGSVPFF-LGNLTNLVTLHLFNNSLSG----FIPSTLGKLKCLSNLNMSMNHLSGAIPSSI-GNVR- 251 (775)
Q Consensus 179 ~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~- 251 (775)
++|++|++++++++...... +..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46777888777765433222 5567777778877777663 234556667777777777777654333222 1233
Q ss_pred ---CCcEEEcccccCCC----CCCccccCCCCCCEEEcccCcccccCCccC-----CCCCCCCeeeccCccccCCC----
Q 043943 252 ---NLRSLFLYSNELSG----SIPKEIGNLRSLSNLDLSINRLNGVIPSSI-----GNSNNLSILYLYSNQLSGSI---- 315 (775)
Q Consensus 252 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~---- 315 (775)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777776653 335556666666666666666654322221 12334555555555554321
Q ss_pred CccCCCCCCCCeeeCcCCcCc
Q 043943 316 PKEIGNLKCLFDLELSMNNLT 336 (775)
Q Consensus 316 ~~~~~~l~~L~~L~l~~n~l~ 336 (775)
+..+..+++|++|++++|.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHhhCCCCCEEECcCCCcc
Confidence 222333444555555544443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.9e-29 Score=256.72 Aligned_cols=284 Identities=22% Similarity=0.221 Sum_probs=208.7
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCC--
Q 043943 45 NLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGK-- 122 (775)
Q Consensus 45 ~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~-- 122 (775)
..|.|.++.|...+ +. .+| . .-.++|++|++++|.++...+..|.++++|++|++++|.+...
T Consensus 5 C~C~~~~l~c~~~~-----------l~-~ip-~--~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNSKG-----------LT-SVP-T--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCSSC-----------CS-SCC-S--CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCCCC-----------cc-cCC-C--CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 44899999996421 11 233 1 2236899999999999865556688999999999999988733
Q ss_pred CchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEeccCCcCcccCCcccCC
Q 043943 123 IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLSTLDLSLNQLIGSVPFFLGN 201 (775)
Q Consensus 123 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 201 (775)
.+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 3667778999999999999988 567778889999999999998887665 57788888888888888887777777888
Q ss_pred CCCccEEEcccccCcc-ccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEE
Q 043943 202 LTNLVTLHLFNNSLSG-FIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNL 280 (775)
Q Consensus 202 l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 280 (775)
+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 8888888888888776 567778888888888888888887777777788888888888888876666667777888888
Q ss_pred EcccCcccccCCccCCCCC-CCCeeeccCccccCCCCc--cCCCCCCCCeeeCcCCcCcCccCCcCC
Q 043943 281 DLSINRLNGVIPSSIGNSN-NLSILYLYSNQLSGSIPK--EIGNLKCLFDLELSMNNLTGVIPSSIG 344 (775)
Q Consensus 281 ~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 344 (775)
++++|.+++..+..+..++ +|++|++++|.+++.... ....+...+.+.+..+.+....|..+.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 8888888777777777763 777777777777643210 011122333444444445444444443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8e-29 Score=261.65 Aligned_cols=288 Identities=20% Similarity=0.234 Sum_probs=185.6
Q ss_pred CCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCC
Q 043943 42 TKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121 (775)
Q Consensus 42 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 121 (775)
.....|.|.|+ |+ .+++.+. .+| .. -.++|++|++++|.+++..+..|.++++|++|++++|.+++
T Consensus 25 ~~~~~C~~~~~-c~---------~~~~~l~-~iP-~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 25 QASLSCDRNGI-CK---------GSSGSLN-SIP-SG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp --CCEECTTSE-EE---------CCSTTCS-SCC-TT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccCCCCCCCeE-ee---------CCCCCcc-ccc-cc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 45677899887 53 2333333 333 22 22578888888888887666678888888888888888887
Q ss_pred CCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCC-cccCCCCCCCEEeccCCc-CcccCCccc
Q 043943 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLSTLDLSLNQ-LIGSVPFFL 199 (775)
Q Consensus 122 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~~~ 199 (775)
..|..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ ..+..+++|++|++++|. +....+..+
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 170 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHc
Confidence 777778888888888888888875544557777888888887777775544 466677777777777763 444445566
Q ss_pred CCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCE
Q 043943 200 GNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSN 279 (775)
Q Consensus 200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 279 (775)
.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------ 244 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------ 244 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------
Confidence 66666777777666666666666666666666666666654332222334556666666666655433322211
Q ss_pred EEcccCcccccCCccCCCCCCCCeeeccCccccC----CCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEcc
Q 043943 280 LDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG----SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLY 355 (775)
Q Consensus 280 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 355 (775)
......++.+++.++.+++ .+|..+..+++|++|++++|+++...+..|..+++|++|+++
T Consensus 245 ---------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 245 ---------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp -----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ---------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 1123344445555544443 345567778888888888888875444445788888888888
Q ss_pred CCcCCCCch
Q 043943 356 RNELSGSIP 364 (775)
Q Consensus 356 ~n~l~~~~~ 364 (775)
+|++.+..|
T Consensus 310 ~N~~~~~~~ 318 (353)
T 2z80_A 310 TNPWDCSCP 318 (353)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCcCC
Confidence 888877654
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.8e-31 Score=300.00 Aligned_cols=304 Identities=14% Similarity=0.021 Sum_probs=139.3
Q ss_pred CCCCCCEEEcccCcccc----cCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCc---CccCCcCCC
Q 043943 273 NLRSLSNLDLSINRLNG----VIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT---GVIPSSIGN 345 (775)
Q Consensus 273 ~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~ 345 (775)
.+++|++|++++|.+++ .++..+..+++|+.|++++|.+.+ ++..+..+++|++|+++..... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 34444444444444431 112222334444455554444443 3333444455555554432111 112233444
Q ss_pred CCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCC-ccCcCCCcccceeccccccccccchhhhccCCCCcE
Q 043943 346 LRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIP-KNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSF 424 (775)
Q Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 424 (775)
+++|+.|+++++. ...+|..+..+++|+.|++++|.+++... ..+..+++|+.|++. +.+.......+...+++|++
T Consensus 269 ~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 5555555555432 22344444555555555555555432221 223445555555555 33332222333345566666
Q ss_pred EeCCC-----------ccceeec-CcCcCCCCCCCEEEcccCcccccCCccccC-CCCCcEEEcc----CCCccCc----
Q 043943 425 LDLSH-----------NNFHGQI-SSDWGRFPQLGTLDFSVNNITGSIPPEIGN-SSKLQVLNLS----SNHIGGK---- 483 (775)
Q Consensus 425 L~l~~-----------n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~Ls----~n~l~~~---- 483 (775)
|++++ +.+++.. ......+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 66662 2333211 111233566666666555555544444433 5666666664 3444432
Q ss_pred -CChhhhcCCCCCEEEcCCCc--CcccCCcCc-cCCCCCCEEECCCCccccc-CCccccCcCCCCEEEccCCcCccCCch
Q 043943 484 -IPMELGRLSSLNKLILNKNQ--LFGSLPPEI-GTLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSNNEFSHKIPT 558 (775)
Q Consensus 484 -~~~~l~~l~~L~~L~L~~n~--~~~~~~~~~-~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 558 (775)
++..+..+++|++|++++|. +++..+..+ ..+++|++|++++|++++. .+..+..+++|++|+|++|.+++....
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 22234456666666665432 333222222 2355566666666665542 223335556666666666665443222
Q ss_pred h-HHhhhccccEEECcCCcCccc
Q 043943 559 Q-FEKLQLQLSELDLSQNFLEGE 580 (775)
Q Consensus 559 ~-~~~l~~~L~~L~Ls~n~l~~~ 580 (775)
. +..++ +|+.|++++|++++.
T Consensus 507 ~~~~~l~-~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLP-SLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCS-SCCEEEEESCBCCTT
T ss_pred HHHHhcC-ccCeeECcCCcCCHH
Confidence 2 23333 555666665555533
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.4e-31 Score=301.26 Aligned_cols=416 Identities=15% Similarity=0.066 Sum_probs=235.3
Q ss_pred CchhccCCCCCCEEECCCcccc---ccCccccc------------CCCCCCEEEcccCcCcccCCcccCC-CCC-CCEEe
Q 043943 123 IPPEIGQLSFLSELSLYSNCLN---GSIPQSLG------------NLSKQSLLSLYNNSLSGYIPPVIGN-LIS-LSTLD 185 (775)
Q Consensus 123 ~p~~~~~l~~L~~L~L~~n~~~---~~~~~~~~------------~l~~L~~L~l~~n~~~~~~~~~l~~-l~~-L~~L~ 185 (775)
.+..+..+++|++|+++++... +.+|..+. .+++|++|++++|.+++..+..+.. +++ |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 4445677888999999876431 22332222 4555555555555554443333333 222 55555
Q ss_pred ccCCcC-cc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccC
Q 043943 186 LSLNQL-IG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNEL 263 (775)
Q Consensus 186 l~~n~~-~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (775)
+++|.. .. .++....++++|++|++++|.+++....+ ++..+..+++|++|++++|.+
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~--------------------l~~~~~~~~~L~~L~L~~n~~ 204 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW--------------------LHELAQHNTSLEVLNFYMTEF 204 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH--------------------HHHHHHHCCCCCEEECTTCCC
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH--------------------HHHHHhcCCCccEEEeeccCC
Confidence 554431 10 01111123444555555544443221110 111223344555555555544
Q ss_pred CC----CCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc---CCCCccCCCCCCCCeeeCcCCcCc
Q 043943 264 SG----SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS---GSIPKEIGNLKCLFDLELSMNNLT 336 (775)
Q Consensus 264 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~ 336 (775)
++ .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.|+++++..
T Consensus 205 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~- 282 (592)
T 3ogk_B 205 AKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP- 282 (592)
T ss_dssp SSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-
T ss_pred CccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-
Confidence 31 122223345555555555555443 3344445555555555432211 12223445556666666665422
Q ss_pred CccCCcCCCCCcCcEEEccCCcCCCCch-hhccCCCCCcEEEeccceecccCCccCcCCCcccceeccc-----------
Q 043943 337 GVIPSSIGNLRNLRLLYLYRNELSGSIP-QAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQ----------- 404 (775)
Q Consensus 337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------- 404 (775)
..+|..+..+++|++|++++|.+++... ..+..+++|+.|++.++...+.++.....+++|+.|++++
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 2345555566677777777776543322 3346677777777763322222333345567777777773
Q ss_pred cccccccchhhhccCCCCcEEeCCCccceeecCcCcCC-CCCCCEEEcc----cCccccc-----CCccccCCCCCcEEE
Q 043943 405 NNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGR-FPQLGTLDFS----VNNITGS-----IPPEIGNSSKLQVLN 474 (775)
Q Consensus 405 n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~L~~L~ 474 (775)
+.+++.....+...+++|++|+++.+.+++.....+.. +++|+.|+++ .|.+++. ++..+..+++|++|+
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 44554434444456888888888777777665555554 7888888886 5566653 334467789999999
Q ss_pred ccCCC--ccCcCChhhh-cCCCCCEEEcCCCcCccc-CCcCccCCCCCCEEECCCCccccc-CCccccCcCCCCEEEccC
Q 043943 475 LSSNH--IGGKIPMELG-RLSSLNKLILNKNQLFGS-LPPEIGTLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSN 549 (775)
Q Consensus 475 Ls~n~--l~~~~~~~l~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~ 549 (775)
+++|. +++..+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. .+.....+++|++|+|++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 97654 5555444443 488999999999998763 344557889999999999998654 333446789999999999
Q ss_pred CcCccCCchhH
Q 043943 550 NEFSHKIPTQF 560 (775)
Q Consensus 550 n~l~~~~~~~~ 560 (775)
|++++.....+
T Consensus 523 n~it~~~~~~l 533 (592)
T 3ogk_B 523 YRASMTGQDLM 533 (592)
T ss_dssp CBCCTTCTTGG
T ss_pred CcCCHHHHHHH
Confidence 99886644433
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=257.99 Aligned_cols=281 Identities=20% Similarity=0.165 Sum_probs=201.0
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 34445777888877 4555443 47888888888888666667888888888888888888777777888888888888
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCC-cccCCCCCccEEEccccc-CccccCccCCCCCCCCEEEccccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP-FFLGNLTNLVTLHLFNNS-LSGFIPSTLGKLKCLSNLNMSMNHLS 240 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (775)
++|.+++..+..+.++++|++|++++|.+....+ ..+..+++|++|++++|. +....+..|..+++|++|++++|.+.
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 8888887666667788888888888887774433 366777778888877773 56565667777777777777777777
Q ss_pred ccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCC
Q 043943 241 GAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
+..|..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+.. ..
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~ 246 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------GE 246 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc---------------------cc
Confidence 666777777777777777777765322222334666666666666665433222111 12
Q ss_pred CCCCCCeeeCcCCcCcC----ccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC
Q 043943 321 NLKCLFDLELSMNNLTG----VIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387 (775)
Q Consensus 321 ~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 387 (775)
..+.++.++++++.+.+ .+|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 34567788888887765 35677889999999999999999544444689999999999999988654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=247.80 Aligned_cols=248 Identities=23% Similarity=0.215 Sum_probs=144.5
Q ss_pred CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccccc--CcccccCCCCCCEEEcc
Q 043943 86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGS--IPQSLGNLSKQSLLSLY 163 (775)
Q Consensus 86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~ 163 (775)
+.++.+++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777777776 4454332 5788888888888754444577888888888888877632 24556667777777777
Q ss_pred cCcCcccCCcccCCCCCCCEEeccCCcCcccCC-cccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc-
Q 043943 164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP-FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG- 241 (775)
Q Consensus 164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~- 241 (775)
+|.+.. ++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 776663 34446666666666666666654433 345555666666666666555555555555555555555555543
Q ss_pred cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN 321 (775)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (775)
..|..+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++..+..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------------~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------------------------SLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------------------------TCCEEECTTSCCSBCCSGGGTT
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC------------------------CCCEEECCCCccCccChhhccC
Confidence 3444444455555555555544444444444444 4444444444444433334445
Q ss_pred CCCCCeeeCcCCcCcCccCCcCCCCC-cCcEEEccCCcCCC
Q 043943 322 LKCLFDLELSMNNLTGVIPSSIGNLR-NLRLLYLYRNELSG 361 (775)
Q Consensus 322 l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~ 361 (775)
+++|++|++++|++.+..+..+..++ +|+.|++++|.+.+
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 55555555555555555555555553 56666666665544
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.7e-27 Score=241.88 Aligned_cols=225 Identities=23% Similarity=0.245 Sum_probs=183.7
Q ss_pred EEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCC
Q 043943 61 VGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYS 140 (775)
Q Consensus 61 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~ 140 (775)
+.++.++.++.. +| ..-.++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip---~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CC---TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CC---cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 344455555442 33 22356899999999999887778889999999999999999877788899999999999999
Q ss_pred cc-ccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCcccc
Q 043943 141 NC-LNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFI 219 (775)
Q Consensus 141 n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 219 (775)
|. +....|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 97 77666788888999999999999988888888888889999999988888766667888888888888888888777
Q ss_pred CccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccc
Q 043943 220 PSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG 289 (775)
Q Consensus 220 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 289 (775)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 7778888888888888888887778888888888888888888887666667888888888888887764
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.2e-27 Score=242.58 Aligned_cols=225 Identities=24% Similarity=0.211 Sum_probs=167.9
Q ss_pred CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC
Q 043943 86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN 165 (775)
Q Consensus 86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 165 (775)
+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67778887776 345433 468888888888888766677888888888888888888777778888888888888888
Q ss_pred c-CcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943 166 S-LSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP 244 (775)
Q Consensus 166 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 244 (775)
. +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 666667777788888888888887776667777777788888888777776666667777777777777777776555
Q ss_pred ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccC
Q 043943 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG 313 (775)
Q Consensus 245 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 313 (775)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 567777777777777777776666677777777777777777776555556666777777777776654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.1e-26 Score=251.66 Aligned_cols=90 Identities=27% Similarity=0.320 Sum_probs=45.6
Q ss_pred ccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCc
Q 043943 271 IGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLR 350 (775)
Q Consensus 271 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 350 (775)
+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 33444444444444444444444444444444455544444444444455555555555555555544444455555555
Q ss_pred EEEccCCcCC
Q 043943 351 LLYLYRNELS 360 (775)
Q Consensus 351 ~L~l~~n~l~ 360 (775)
.|++++|.+.
T Consensus 294 ~L~L~~Np~~ 303 (452)
T 3zyi_A 294 ELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCEE
T ss_pred EEEccCCCcC
Confidence 6666555544
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.8e-27 Score=245.06 Aligned_cols=234 Identities=23% Similarity=0.221 Sum_probs=140.8
Q ss_pred CCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEE
Q 043943 82 FPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLS 161 (775)
Q Consensus 82 l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 161 (775)
.+++++|++++|.++ .+|..+.++++|++|+|++|.+. .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 456666666666666 45555666666666666666666 56666666666666666666666 5565666666666666
Q ss_pred cccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccc
Q 043943 162 LYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSG 241 (775)
Q Consensus 162 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (775)
+++|.+.+.+|..+.. . ..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 6665555444443221 0 01122345666777777776666 45556666666666666666666
Q ss_pred cCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943 242 AIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN 321 (775)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (775)
.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 34445666666666666666666666666666666666666666666566655666666666666666665566666666
Q ss_pred CCCCCeeeCcCCcC
Q 043943 322 LKCLFDLELSMNNL 335 (775)
Q Consensus 322 l~~L~~L~l~~n~l 335 (775)
+++|+.+++..+.+
T Consensus 300 L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 300 LPANCIILVPPHLQ 313 (328)
T ss_dssp SCTTCEEECCGGGS
T ss_pred ccCceEEeCCHHHH
Confidence 66666555554433
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=250.09 Aligned_cols=106 Identities=27% Similarity=0.252 Sum_probs=55.7
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
++++.|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45556666666655555555555555555555555555544455555555555555555555443344555555555555
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccC
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSL 188 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~ 188 (775)
++|.+....+..|..+++|++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCC
Confidence 55544444444444444444444444
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.1e-26 Score=248.39 Aligned_cols=247 Identities=24% Similarity=0.261 Sum_probs=138.1
Q ss_pred CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943 85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN 164 (775)
Q Consensus 85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 164 (775)
.+.++.++..++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|+|++|.+....+..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345666666655 3444333 4566666666666655555566666666666666666555555555555555555555
Q ss_pred CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc-cccccC
Q 043943 165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN-HLSGAI 243 (775)
Q Consensus 165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~ 243 (775)
|.++...+..|..+++|++|++++|.+. ...+..|..+++|++|++++| .+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE------------------------SIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC------------------------EECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc------------------------ccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 5555444444555555555555555444 444444444444444444442 222222
Q ss_pred CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943 244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK 323 (775)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 323 (775)
+..|..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..++
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred cchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 234455555555555555554 233 255566666666666666655566666666666666666666655555566666
Q ss_pred CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCC
Q 043943 324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS 360 (775)
Q Consensus 324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 360 (775)
+|++|++++|+++...+..+..+++|+.|++++|.+.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6666666666666555555666666666666666554
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.7e-26 Score=249.63 Aligned_cols=247 Identities=21% Similarity=0.206 Sum_probs=150.2
Q ss_pred CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943 85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN 164 (775)
Q Consensus 85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 164 (775)
.+.++.++..++ .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666665 3444332 4666677776666666666666666666666666666666556666666666666666
Q ss_pred CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccc-cCccccCccCCCCCCCCEEEcccccccccC
Q 043943 165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNN-SLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243 (775)
Q Consensus 165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 243 (775)
|.++...+..|..+++|++|++++|.+....+..|.++++|+.|++++| .+....+..|..+++|++|++++|.+.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 6666665556666666666666666666544555666666666666653 33333344556666666666666666532
Q ss_pred CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943 244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK 323 (775)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 323 (775)
| .+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 2 355566666666666666655555666666666666666666655555666666666666666666655555555566
Q ss_pred CCCeeeCcCCcCc
Q 043943 324 CLFDLELSMNNLT 336 (775)
Q Consensus 324 ~L~~L~l~~n~l~ 336 (775)
+|+.|++++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 6666666666554
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.8e-25 Score=226.06 Aligned_cols=217 Identities=24% Similarity=0.271 Sum_probs=125.8
Q ss_pred CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCC
Q 043943 44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKI 123 (775)
Q Consensus 44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 123 (775)
.++|.|.|+.|...+.++.++++++.+.. +| ..+ .+++++|++++|.+++..+..|..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 47899999999765556667777666653 33 111 145666666666665555555666666666666666665444
Q ss_pred chhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCC
Q 043943 124 PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLT 203 (775)
Q Consensus 124 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 203 (775)
+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++. .+..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~ 133 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL------------------------PPRVFDSLT 133 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC------------------------CTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee------------------------CHHHhCcCc
Confidence 44445556666666666555544444444555555555555544444 444445555
Q ss_pred CccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcc
Q 043943 204 NLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLS 283 (775)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 283 (775)
+|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 134 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 55555555555554444445555556666666555555444455566666666666666665444456666677777777
Q ss_pred cCccc
Q 043943 284 INRLN 288 (775)
Q Consensus 284 ~n~~~ 288 (775)
+|.+.
T Consensus 214 ~N~~~ 218 (270)
T 2o6q_A 214 ENPWD 218 (270)
T ss_dssp SSCBC
T ss_pred CCCee
Confidence 76654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.2e-28 Score=248.43 Aligned_cols=248 Identities=24% Similarity=0.228 Sum_probs=143.3
Q ss_pred cCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccc-ccCccccc-------CCCCCCEEEcccCcCcccCCccc
Q 043943 104 SQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLN-GSIPQSLG-------NLSKQSLLSLYNNSLSGYIPPVI 175 (775)
Q Consensus 104 ~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~l 175 (775)
...++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3344555555555555 344443322 555555555552 23333333 45555566666555555555544
Q ss_pred --CCCCCCCEEeccCCcCcccCCcccCCC-----CCccEEEcccccCccccCccCCCCCCCCEEEccccccccc--CCcc
Q 043943 176 --GNLISLSTLDLSLNQLIGSVPFFLGNL-----TNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGA--IPSS 246 (775)
Q Consensus 176 --~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~ 246 (775)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5556666666666665544 4444444 5666666666666665556666666666666666665443 1222
Q ss_pred c--cCCCCCcEEEcccccCCCC--CC-ccccCCCCCCEEEcccCcccccCC-ccCCCCCCCCeeeccCccccCCCCccCC
Q 043943 247 I--GNVRNLRSLFLYSNELSGS--IP-KEIGNLRSLSNLDLSINRLNGVIP-SSIGNSNNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 247 l--~~l~~L~~L~l~~n~~~~~--~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
+ ..+++|++|++++|.+++. ++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 2 5566666666666666521 11 223456677777777777666553 34455667777777777776 4555554
Q ss_pred CCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCC
Q 043943 321 NLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSG 361 (775)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 361 (775)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6777777777777765 44 6777777777777777664
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.4e-27 Score=245.87 Aligned_cols=257 Identities=20% Similarity=0.154 Sum_probs=126.8
Q ss_pred CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943 85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN 164 (775)
Q Consensus 85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 164 (775)
++..+++.+.+.......+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444555555544444444555666666666666665555666666666666666666654333 55666666666666
Q ss_pred CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943 165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP 244 (775)
Q Consensus 165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 244 (775)
|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 6554322 224555555555555433322 23445555555555554444444444445555554444444333
Q ss_pred ccc-cCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCC
Q 043943 245 SSI-GNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLK 323 (775)
Q Consensus 245 ~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 323 (775)
..+ ..+++|++|++++|.+++. +. ...+++|++| ++++|.+++. +..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L------------------------~Ls~N~l~~l-~~~~~~l~ 214 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL------------------------DLSSNKLAFM-GPEFQSAA 214 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE------------------------ECCSSCCCEE-CGGGGGGT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE------------------------ECCCCcCCcc-hhhhcccC
Confidence 333 2344444444444444322 11 1123444444 4444444422 22244444
Q ss_pred CCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCC-CCchhhccCCCCCcEEEec
Q 043943 324 CLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELS-GSIPQAIGNLVELVSLLLG 379 (775)
Q Consensus 324 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 379 (775)
+|++|++++|+++. +|..+..+++|+.|++++|.+. +.++..+..++.|+.+++.
T Consensus 215 ~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 215 GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 45555555554442 3344445555555555555554 3444555555555555554
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1e-29 Score=289.33 Aligned_cols=456 Identities=14% Similarity=0.116 Sum_probs=259.5
Q ss_pred CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCccc---Cc------------ccccCCCC
Q 043943 44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGI---IP------------PQISQLFK 108 (775)
Q Consensus 44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~---~~------------~~~~~l~~ 108 (775)
..|++|.++... ....+++..+.. ..+...+.++++|+.|+++++..... .| .....+++
T Consensus 32 ~vck~W~~~~~~---~~~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~ 106 (594)
T 2p1m_B 32 LVCKSWYEIERW---CRRKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106 (594)
T ss_dssp TSCHHHHHHHHH---HCCEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHHHHHHHhhhh---hceEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence 345579887322 223445543322 22324566788999999998763211 11 12346789
Q ss_pred CCEEeCcCCCCCCCCchhcc-CCCCCCEEECCCc-ccccc-CcccccCCCCCCEEEcccCcCcccCCccc----CCCCCC
Q 043943 109 LQYLDLSANKLSGKIPPEIG-QLSFLSELSLYSN-CLNGS-IPQSLGNLSKQSLLSLYNNSLSGYIPPVI----GNLISL 181 (775)
Q Consensus 109 L~~L~ls~n~~~~~~p~~~~-~l~~L~~L~L~~n-~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~L 181 (775)
|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+ ..+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 99999999988766666664 6889999999988 44432 34444578899999999888776544333 367788
Q ss_pred CEEeccCCc--Ccc-cCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc-------cccccCCccccCCC
Q 043943 182 STLDLSLNQ--LIG-SVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN-------HLSGAIPSSIGNVR 251 (775)
Q Consensus 182 ~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-------~~~~~~~~~l~~l~ 251 (775)
++|++++|. +.. .++..+..+++|++|++++|...+.++..+..+++|++|++..+ .+.+ ++..+.+++
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~ 265 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCK 265 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCT
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCC
Confidence 888888875 211 11112235688888888887432235666777888888885543 2332 233566777
Q ss_pred CCcEE-EcccccCCCCCCccccCCCCCCEEEcccCcccccCC-ccCCCCCCCCeeeccCccccCC-CCccCCCCCCCCee
Q 043943 252 NLRSL-FLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIP-SSIGNSNNLSILYLYSNQLSGS-IPKEIGNLKCLFDL 328 (775)
Q Consensus 252 ~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 328 (775)
+|+.| .+..... +.++..+..+++|++|++++|.+++... ..+..+++|++|++.+| ++.. ++.....+++|++|
T Consensus 266 ~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L 343 (594)
T 2p1m_B 266 ELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLREL 343 (594)
T ss_dssp TCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred CcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEE
Confidence 77777 3333222 2344444456777777777777654322 22446677777777766 3211 11122245667777
Q ss_pred eCcC---------CcCcCccCCcC-CCCCcCcEEEccCCcCCCCchhhcc-CCCCCcEEEeccceecccCCccCcCCCcc
Q 043943 329 ELSM---------NNLTGVIPSSI-GNLRNLRLLYLYRNELSGSIPQAIG-NLVELVSLLLGFNYFRGPIPKNFKNLTNL 397 (775)
Q Consensus 329 ~l~~---------n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 397 (775)
++++ +.+++.....+ ..+++|+.|.+..|.+++.....+. .+++|+.|+++.+...
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~------------- 410 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK------------- 410 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTT-------------
T ss_pred EEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCC-------------
Confidence 6633 22322111111 1245555555555555443333332 3455555555411000
Q ss_pred cceeccc-cccccc----cchhhhccCCCCcEEeCCCccceeecCcCcCC-CCCCCEEEcccCcccccCCccc-cCCCCC
Q 043943 398 VRVRMNQ-NNLSGN----ISEAFVGTYPTLSFLDLSHNNFHGQISSDWGR-FPQLGTLDFSVNNITGSIPPEI-GNSSKL 470 (775)
Q Consensus 398 ~~L~l~~-n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~-~~~~~L 470 (775)
+ +.++.. .....+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|
T Consensus 411 ------~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 411 ------APDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp ------CCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred ------CcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 0 222210 0111235567777777765 444433333333 6777788887777765444333 567788
Q ss_pred cEEEccCCCccCcCCh-hhhcCCCCCEEEcCCCcCcccCCcCc-cCCCCCCEEECCCCc
Q 043943 471 QVLNLSSNHIGGKIPM-ELGRLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENR 527 (775)
Q Consensus 471 ~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~ls~n~ 527 (775)
++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 8888888877544333 33457788888888887754333333 445666666655543
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.7e-25 Score=250.00 Aligned_cols=279 Identities=27% Similarity=0.311 Sum_probs=128.5
Q ss_pred CCCCCCcccceeeC-------CCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeC
Q 043943 42 TKKNLCAWSGIYCN-------HDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDL 114 (775)
Q Consensus 42 ~~~~~c~w~gv~c~-------~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~l 114 (775)
.+.++|.|.|..|. ....++.++++++.+. .+| ..+. ++|++|++++|.++. +|. .+++|++|+|
T Consensus 17 ~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp-~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L 88 (622)
T 3g06_A 17 RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEV 88 (622)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCC-SCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred hcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccC-hhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEc
Confidence 35678999775331 1223555666655554 344 2222 455555555555552 332 3455555555
Q ss_pred cCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCccc
Q 043943 115 SANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194 (775)
Q Consensus 115 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 194 (775)
++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.++.. |.. +++|++|++++|.+++
T Consensus 89 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~~- 155 (622)
T 3g06_A 89 SGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLAS- 155 (622)
T ss_dssp CSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-
T ss_pred CCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCCC-
Confidence 555555 2333 44555555555555552 222 344455555555554432 211 2444445554444432
Q ss_pred CCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCC
Q 043943 195 VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNL 274 (775)
Q Consensus 195 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l 274 (775)
+|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+
T Consensus 156 l~~---~~~~L~~L~L~~N~l~~-------------------------l~---~~~~~L~~L~Ls~N~l~~-l~~---~~ 200 (622)
T 3g06_A 156 LPA---LPSELCKLWAYNNQLTS-------------------------LP---MLPSGLQELSVSDNQLAS-LPT---LP 200 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-------------------------CC---CCCTTCCEEECCSSCCSC-CCC---CC
T ss_pred cCC---ccCCCCEEECCCCCCCC-------------------------Cc---ccCCCCcEEECCCCCCCC-CCC---cc
Confidence 121 12344444444444443 22 223444444444444442 222 12
Q ss_pred CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEc
Q 043943 275 RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYL 354 (775)
Q Consensus 275 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 354 (775)
++|+.|++++|.++. +|. .+++|+.|++++|.+++ +| ..+++|++|++++|+++. +|. .+++|+.|++
T Consensus 201 ~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~L 268 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSV 268 (622)
T ss_dssp TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeC
Confidence 444555555554442 221 12445555555554443 22 233445555555555543 222 3345555555
Q ss_pred cCCcCCCCchhhccCCCCCcEEEeccceecccCCc
Q 043943 355 YRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPK 389 (775)
Q Consensus 355 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 389 (775)
++|.++ .+|..+.++++|+.|++++|.+++..+.
T Consensus 269 s~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 269 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 555554 3444455555555555555555444433
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.9e-27 Score=244.69 Aligned_cols=249 Identities=22% Similarity=0.223 Sum_probs=207.6
Q ss_pred cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCC-CCCCchhcc-------CCCCCCEEECCCccccccCccc
Q 043943 79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKL-SGKIPPEIG-------QLSFLSELSLYSNCLNGSIPQS 150 (775)
Q Consensus 79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~-~~~~p~~~~-------~l~~L~~L~L~~n~~~~~~~~~ 150 (775)
+...++|++|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44567889999999998 667666554 88999999988 345666665 7999999999999999888887
Q ss_pred c--cCCCCCCEEEcccCcCcccCCcccCCC-----CCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccc--cCc
Q 043943 151 L--GNLSKQSLLSLYNNSLSGYIPPVIGNL-----ISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGF--IPS 221 (775)
Q Consensus 151 ~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~ 221 (775)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8999999999999999988 7777766 8999999999999988888899999999999999997764 233
Q ss_pred cC--CCCCCCCEEEcccccccc---cCCccccCCCCCcEEEcccccCCCCCC-ccccCCCCCCEEEcccCcccccCCccC
Q 043943 222 TL--GKLKCLSNLNMSMNHLSG---AIPSSIGNVRNLRSLFLYSNELSGSIP-KEIGNLRSLSNLDLSINRLNGVIPSSI 295 (775)
Q Consensus 222 ~l--~~l~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l 295 (775)
.+ ..+++|++|++++|.+.+ .....+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 34 889999999999999873 222334578999999999999998765 45667899999999999998 666666
Q ss_pred CCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcC
Q 043943 296 GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337 (775)
Q Consensus 296 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 337 (775)
. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 8999999999999976 55 8899999999999999875
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=9e-29 Score=281.46 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=50.9
Q ss_pred hhcCCCCCEEEcCCCcCcccCCcCccC-CCCCCEEECCCCcccccCCccc-cCcCCCCEEEccCCcCccCCchhHH-hhh
Q 043943 488 LGRLSSLNKLILNKNQLFGSLPPEIGT-LTELELLDLSENRLSNAIPGSL-GNLLKVHYLNLSNNEFSHKIPTQFE-KLQ 564 (775)
Q Consensus 488 l~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~ 564 (775)
+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+..+. .++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34455555555544 333322222322 4555555555555544332222 3455556666666555433322222 233
Q ss_pred ccccEEECcCCcCcccCCccc-cCCCCCcEEeCCCC
Q 043943 565 LQLSELDLSQNFLEGEIPSQI-CNMESLVKLNLSYN 599 (775)
Q Consensus 565 ~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ls~n 599 (775)
+|+.|++++|.++......+ ..++.|+...+..+
T Consensus 507 -~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 507 -TMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp -GSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred -CCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 56666666665543333333 34555555555444
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.6e-27 Score=242.11 Aligned_cols=264 Identities=22% Similarity=0.221 Sum_probs=175.1
Q ss_pred CCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccC
Q 043943 109 LQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSL 188 (775)
Q Consensus 109 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 188 (775)
++.++++.+.+...+...+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3444555555543333444555666666666666665555566666666666666666554433 55555555555555
Q ss_pred CcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCC
Q 043943 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIP 268 (775)
Q Consensus 189 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 268 (775)
|.++ +.. ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+
T Consensus 90 n~l~------------------------~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQ------------------------ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEE------------------------EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGG
T ss_pred Cccc------------------------ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccc
Confidence 5444 221 114555555555555443332 23456666666666665555
Q ss_pred ccccCCCCCCEEEcccCcccccCCccC-CCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCC
Q 043943 269 KEIGNLRSLSNLDLSINRLNGVIPSSI-GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLR 347 (775)
Q Consensus 269 ~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 347 (775)
..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++..+ .+..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccC
Confidence 556666667777777776666555544 3567777777777777644 2 23458999999999999997544 488999
Q ss_pred cCcEEEccCCcCCCCchhhccCCCCCcEEEeccceec-ccCCccCcCCCcccceeccccc-cccc
Q 043943 348 NLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFR-GPIPKNFKNLTNLVRVRMNQNN-LSGN 410 (775)
Q Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-~~~~ 410 (775)
+|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++..+..+++|+.+++.++. +.+.
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 9999999999998 57788899999999999999998 6778888999999999998543 4443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-25 Score=246.77 Aligned_cols=234 Identities=21% Similarity=0.216 Sum_probs=164.2
Q ss_pred CCcEEEeccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEc
Q 043943 372 ELVSLLLGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDF 451 (775)
Q Consensus 372 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 451 (775)
+|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 45555555555555444555555555555555555554443 2566677777777777665432 267777777
Q ss_pred ccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCcc-CCCCCCEEECCCCcccc
Q 043943 452 SVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG-TLTELELLDLSENRLSN 530 (775)
Q Consensus 452 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~ls~n~l~~ 530 (775)
++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77777765443 356788888888888877777777788888888888888877776665 67888888888888876
Q ss_pred cCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCc-ccCCccc
Q 043943 531 AIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS-GFIPNCF 609 (775)
Q Consensus 531 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~-~~~p~~l 609 (775)
..+ ...+++|+.|+|++|.+++..| .+..++ +|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~-~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAA-GVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGT-TCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCC-CccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 633 3357888888888888886544 466776 88888888888884 6777888888888888888887 5667777
Q ss_pred cCCCCCCEEeCC
Q 043943 610 EDMHGLSSIDIS 621 (775)
Q Consensus 610 ~~l~~L~~l~ls 621 (775)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 777777766665
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.5e-24 Score=217.66 Aligned_cols=211 Identities=28% Similarity=0.284 Sum_probs=189.3
Q ss_pred CCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEc
Q 043943 420 PTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLIL 499 (775)
Q Consensus 420 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 499 (775)
++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 47899999999998888778999999999999999998877778999999999999999999888888999999999999
Q ss_pred CCCcCcccCCcCccCCCCCCEEECCCCccccc-CCccccCcCCCCEEEccCCcCccCCchhHHhhhcccc----EEECcC
Q 043943 500 NKNQLFGSLPPEIGTLTELELLDLSENRLSNA-IPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLS----ELDLSQ 574 (775)
Q Consensus 500 ~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~----~L~Ls~ 574 (775)
++|++.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+. +|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-QMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-TCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-hccccceeeecCC
Confidence 99999877777899999999999999999875 588999999999999999999988888888887 787 899999
Q ss_pred CcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCCC
Q 043943 575 NFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPFS 632 (775)
Q Consensus 575 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 632 (775)
|.+++..+..+.. .+|+.|++++|++++..+..|..+++|+.|++++|++.|.+|..
T Consensus 187 n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 187 NPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp SCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred CcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 9999766665544 48999999999999988888899999999999999999999854
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.4e-26 Score=247.85 Aligned_cols=215 Identities=23% Similarity=0.210 Sum_probs=88.3
Q ss_pred CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEecc
Q 043943 108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS 187 (775)
Q Consensus 108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 187 (775)
+|++|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44444444444444444444444444444444444443322 4444444444444444332211 1344444444
Q ss_pred CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCcccc-CCCCCcEEEcccccCCCC
Q 043943 188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG-NVRNLRSLFLYSNELSGS 266 (775)
Q Consensus 188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~ 266 (775)
+|.+.+..+. .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 4444432222 123444444444444444444444444444444444444443333332 344444444444444322
Q ss_pred CCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCc
Q 043943 267 IPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLT 336 (775)
Q Consensus 267 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 336 (775)
| .+..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 -K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred -c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 1 12234444444444444443222 23344444444444444442 2333333444444444444443
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.7e-23 Score=232.22 Aligned_cols=268 Identities=26% Similarity=0.312 Sum_probs=163.4
Q ss_pred CCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeecc
Q 043943 228 CLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLY 307 (775)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 307 (775)
+++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4677777777776 5555544 57777777777776 3444 45677777777777663 332 45666677777
Q ss_pred CccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccC
Q 043943 308 SNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPI 387 (775)
Q Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 387 (775)
+|.+++. |. .+++|+.|++++|+++. +|.. +++|++|++++|.+++. |. .+.+
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~--------------- 162 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSE--------------- 162 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTT---------------
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCC---------------
Confidence 6666642 22 44566666666666654 2322 25566666666655431 21 1233
Q ss_pred CccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCC
Q 043943 388 PKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNS 467 (775)
Q Consensus 388 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 467 (775)
|+.|++++|.++.. + ..+++|+.|++++|.+++. |. .+++|+.|++++|.++. +|. .+
T Consensus 163 ---------L~~L~L~~N~l~~l-~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~~---~~ 220 (622)
T 3g06_A 163 ---------LCKLWAYNNQLTSL-P----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPA---LP 220 (622)
T ss_dssp ---------CCEEECCSSCCSCC-C----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS-CCC---CC
T ss_pred ---------CCEEECCCCCCCCC-c----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccc-cCC---CC
Confidence 44444444444331 1 2345666666666666542 22 23667777777777663 332 24
Q ss_pred CCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEc
Q 043943 468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNL 547 (775)
Q Consensus 468 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 547 (775)
++|++|++++|.+++ +| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 677777777777775 34 34567777777777776 3444 5677777888887777 45667777777888888
Q ss_pred cCCcCccCCchhHHhhh
Q 043943 548 SNNEFSHKIPTQFEKLQ 564 (775)
Q Consensus 548 s~n~l~~~~~~~~~~l~ 564 (775)
++|++++..|..+..+.
T Consensus 292 ~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 292 EGNPLSERTLQALREIT 308 (622)
T ss_dssp CSCCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhcc
Confidence 88877777777666654
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.6e-23 Score=212.86 Aligned_cols=205 Identities=25% Similarity=0.244 Sum_probs=129.3
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777788777777666667777777777777777777666666777777777777777777666666777777777777
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCccc-CCcccCCCCCccEEEcccccCccccCccCCCCCCCC----EEEcccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS-VPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLS----NLNMSMN 237 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~l~~n 237 (775)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 77777666665666666777777766666542 355566666666666666666655555555444444 5555555
Q ss_pred cccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 288 (775)
.+.+..+..+. ..+|+.|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 55543333322 234555555555555443334455555555555555544
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.8e-23 Score=208.98 Aligned_cols=206 Identities=24% Similarity=0.288 Sum_probs=167.7
Q ss_pred CCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcC
Q 043943 421 TLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILN 500 (775)
Q Consensus 421 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 500 (775)
..+.++++++.++. +|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45677777777763 444332 578888888888876666678888888888888888876666666778888888888
Q ss_pred CCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCccc
Q 043943 501 KNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGE 580 (775)
Q Consensus 501 ~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~ 580 (775)
+|++.+..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..++ +|+.|++++|.+++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT-SLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc-ccceeEecCCcCcEe
Confidence 8888866666778888888888888888887777788888888888888888876666677777 899999999999877
Q ss_pred CCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943 581 IPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630 (775)
Q Consensus 581 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 630 (775)
.+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.+.++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 77788999999999999999998888889999999999999999988776
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.4e-23 Score=207.44 Aligned_cols=208 Identities=25% Similarity=0.284 Sum_probs=116.1
Q ss_pred ccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCC
Q 043943 103 ISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLS 182 (775)
Q Consensus 103 ~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 182 (775)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 3445556666666655542 22 355566666666666655532 2455555555555555555555555555555666
Q ss_pred EEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEccccc
Q 043943 183 TLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNE 262 (775)
Q Consensus 183 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 262 (775)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666665554444445555666666666666555555555556666666666666555444445555666666666666
Q ss_pred CCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCC
Q 043943 263 LSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGN 321 (775)
Q Consensus 263 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 321 (775)
+++..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|..++.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 6555555555566666666666654422 334555555555555555554443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=9.1e-23 Score=206.35 Aligned_cols=213 Identities=25% Similarity=0.289 Sum_probs=182.1
Q ss_pred ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943 78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157 (775)
Q Consensus 78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 157 (775)
....+++|+.|++++|.+... ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..|.++++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 345678899999999988642 357889999999999998885 3 368889999999999999987777778899999
Q ss_pred CEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc
Q 043943 158 SLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237 (775)
Q Consensus 158 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (775)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 99999999999888888899999999999999988777777889999999999999999888888899999999999999
Q ss_pred cccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCC
Q 043943 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNL 301 (775)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 301 (775)
.+.+..+..+..+++|+.|++++|.+.+ .+++|+.|+++.|.++|.+|.+++.+...
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 9998877778899999999999998764 35678899999999999999888766543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.1e-22 Score=202.23 Aligned_cols=203 Identities=27% Similarity=0.243 Sum_probs=116.9
Q ss_pred ccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCC
Q 043943 78 SFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQ 157 (775)
Q Consensus 78 ~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 157 (775)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..+ ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 3456666777777777666 3444332 566777777777766556666677777777777776664322 2556666
Q ss_pred CEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccc
Q 043943 158 SLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMN 237 (775)
Q Consensus 158 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (775)
++|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 66666666655 33445555556666666666555444455555555666666655555555555555555555555555
Q ss_pred cccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcc
Q 043943 238 HLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRL 287 (775)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 287 (775)
++++..+..+..+++|+.|++++|.++ .+|..+..+.+|+.|++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 555443444455555555555555554 4444444455555555555544
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.2e-22 Score=201.62 Aligned_cols=203 Identities=27% Similarity=0.287 Sum_probs=128.4
Q ss_pred cccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCC
Q 043943 102 QISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISL 181 (775)
Q Consensus 102 ~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 181 (775)
.+.++++|++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 3667788888888888887 4555443 6788888888888777777788888888888888877765332 566777
Q ss_pred CEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccc
Q 043943 182 STLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSN 261 (775)
Q Consensus 182 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (775)
++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 77777777665 45555666666666666666666655566666666666666666666544444555555666666555
Q ss_pred cCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccc
Q 043943 262 ELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQL 311 (775)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 311 (775)
.+++..+..|..+++|++|++++|+++ .+|..+...++|+.+++.+|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 555443344455555555555555555 3333343444444444444443
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.3e-24 Score=227.99 Aligned_cols=267 Identities=17% Similarity=0.176 Sum_probs=176.0
Q ss_pred CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCC--CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCC
Q 043943 44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSF--PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121 (775)
Q Consensus 44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l--~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 121 (775)
..|.+|.++.|+ ...++.++++++.+.. ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+
T Consensus 34 ~vc~~W~~~~~~-~~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASD-ESLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTC-STTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcC-chhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 456689999885 4457788888776652 344555 7888888888888766554 5567888888888887765
Q ss_pred C-CchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC-cCccc-CCcccCCCCCCCEEeccCC-cCccc-CC
Q 043943 122 K-IPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN-SLSGY-IPPVIGNLISLSTLDLSLN-QLIGS-VP 196 (775)
Q Consensus 122 ~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~~~~~-~~ 196 (775)
. +|..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 4 6677788888888888888877777777778888888888887 56543 4555677778888888777 66543 34
Q ss_pred cccCCCC-CccEEEcccc--cCc-cccCccCCCCCCCCEEEccccc-ccccCCccccCCCCCcEEEccccc-CCCCCCcc
Q 043943 197 FFLGNLT-NLVTLHLFNN--SLS-GFIPSTLGKLKCLSNLNMSMNH-LSGAIPSSIGNVRNLRSLFLYSNE-LSGSIPKE 270 (775)
Q Consensus 197 ~~~~~l~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~ 270 (775)
..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 5566677 7777777777 343 3344555667777777777776 555555566667777777777663 22221224
Q ss_pred ccCCCCCCEEEcccCcccccCCccCCCC-CCCCeeeccCccccCCCCccCC
Q 043943 271 IGNLRSLSNLDLSINRLNGVIPSSIGNS-NNLSILYLYSNQLSGSIPKEIG 320 (775)
Q Consensus 271 l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~ 320 (775)
+..+++|++|++++| ++. ..+..+ .++..|++++|.+++..|..++
T Consensus 268 l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence 556666777777666 221 122222 2355555666666655554443
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=6.7e-22 Score=197.44 Aligned_cols=142 Identities=25% Similarity=0.251 Sum_probs=67.6
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc
Q 043943 45 NLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP 124 (775)
Q Consensus 45 ~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 124 (775)
+||.|.|+.|.. ....++++++.+. .+| ..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCS-SCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCcc-ccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 578999999942 2234555555544 222 1111 345555555555554444445555555555555555554444
Q ss_pred hhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCc
Q 043943 125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLI 192 (775)
Q Consensus 125 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 192 (775)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 44455555555555555544333334444444444444444444333333333333333333333333
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.1e-21 Score=194.45 Aligned_cols=178 Identities=19% Similarity=0.213 Sum_probs=107.9
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCC-CCCCCchhccCCCCCCEEECCC-ccccccCcccccCCCCCCEEE
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK-LSGKIPPEIGQLSFLSELSLYS-NCLNGSIPQSLGNLSKQSLLS 161 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~-~~~~~p~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~ 161 (775)
+|++|++++|.+++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.++...+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 77888888888876666677778888888888876 6655555677777777777777 777755556677777777777
Q ss_pred cccCcCcccCCcccCCCCCCC---EEeccCC-cCcccCCcccCCCCCcc-EEEcccccCccccCccCCCCCCCCEEEccc
Q 043943 162 LYNNSLSGYIPPVIGNLISLS---TLDLSLN-QLIGSVPFFLGNLTNLV-TLHLFNNSLSGFIPSTLGKLKCLSNLNMSM 236 (775)
Q Consensus 162 l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (775)
+++|.+++ +|. +..+++|+ +|++++| .+....+..|..+++|+ +|++++|.++.+.+..+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 77776665 333 55555555 6666655 55544444455555555 5555555555333333333 4555555555
Q ss_pred cc-ccccCCccccCC-CCCcEEEcccccCC
Q 043943 237 NH-LSGAIPSSIGNV-RNLRSLFLYSNELS 264 (775)
Q Consensus 237 n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~ 264 (775)
|. +++..+..+..+ ++|+.|++++|.++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 52 443334444444 44444544444444
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=7.6e-22 Score=203.84 Aligned_cols=201 Identities=22% Similarity=0.175 Sum_probs=124.7
Q ss_pred CCCCEEECCCccccccCcccc--cCCCCCCEEEcccCcCcccCC----cccCCCCCCCEEeccCCcCcccCCcccCCCCC
Q 043943 131 SFLSELSLYSNCLNGSIPQSL--GNLSKQSLLSLYNNSLSGYIP----PVIGNLISLSTLDLSLNQLIGSVPFFLGNLTN 204 (775)
Q Consensus 131 ~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 204 (775)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555555 555555666665555554333 23345666666666666666555566666666
Q ss_pred ccEEEcccccCcc---cc-CccCCCCCCCCEEEcccccccccCCc----cccCCCCCcEEEcccccCCCCCCccccCC--
Q 043943 205 LVTLHLFNNSLSG---FI-PSTLGKLKCLSNLNMSMNHLSGAIPS----SIGNVRNLRSLFLYSNELSGSIPKEIGNL-- 274 (775)
Q Consensus 205 L~~L~l~~n~l~~---~~-~~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-- 274 (775)
|++|++++|++.+ .. +..+..+++|++|++++|.++. ++. .+..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 6666666666543 11 1223566677777777776652 121 23566777777777777776666666555
Q ss_pred -CCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcC
Q 043943 275 -RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTG 337 (775)
Q Consensus 275 -~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 337 (775)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 57777777777777 4455543 6778888888887754 22 5677888888888887764
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=207.89 Aligned_cols=204 Identities=19% Similarity=0.201 Sum_probs=158.9
Q ss_pred CCCCcEEeCCCccceeecCcCc--CCCCCCCEEEcccCcccccCC----ccccCCCCCcEEEccCCCccCcCChhhhcCC
Q 043943 419 YPTLSFLDLSHNNFHGQISSDW--GRFPQLGTLDFSVNNITGSIP----PEIGNSSKLQVLNLSSNHIGGKIPMELGRLS 492 (775)
Q Consensus 419 ~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 492 (775)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568888888888888888777 788889999999888887554 3445788899999999988887778888888
Q ss_pred CCCEEEcCCCcCccc--C--CcCccCCCCCCEEECCCCcccccCC--c-cccCcCCCCEEEccCCcCccCCchhHHhhh-
Q 043943 493 SLNKLILNKNQLFGS--L--PPEIGTLTELELLDLSENRLSNAIP--G-SLGNLLKVHYLNLSNNEFSHKIPTQFEKLQ- 564 (775)
Q Consensus 493 ~L~~L~L~~n~~~~~--~--~~~~~~l~~L~~L~ls~n~l~~~~~--~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~- 564 (775)
+|++|+|++|++.+. + +..+..+++|++|++++|+++...+ . .+..+++|++|+|++|++++.+|..+..+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 999999999887542 1 2334678888899999988863321 1 246778889999999988888777776662
Q ss_pred -ccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccc
Q 043943 565 -LQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQG 627 (775)
Q Consensus 565 -~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~ 627 (775)
++|+.|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 38899999999988 6677664 7899999999998875 33 5777888999999998764
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2e-23 Score=220.69 Aligned_cols=257 Identities=19% Similarity=0.206 Sum_probs=140.3
Q ss_pred EEEccCCcCCCCchhhccCCCCCcEEEeccceecccCC----ccCcCCC-cccceeccccccccccchhhhccCCCCcEE
Q 043943 351 LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIP----KNFKNLT-NLVRVRMNQNNLSGNISEAFVGTYPTLSFL 425 (775)
Q Consensus 351 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 425 (775)
.++++.|.+++.+|..+...++|+.|++++|.+++..+ ..+..++ +|+.|++++|.+.+..+..+.. +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-~------ 74 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-I------ 74 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-H------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-H------
Confidence 35677777777777766666667777777777765544 3444454 5555555555555443333311 1
Q ss_pred eCCCccceeecCcCcCC-CCCCCEEEcccCcccccCCcc----ccCC-CCCcEEEccCCCccCcCChhhh----c-CCCC
Q 043943 426 DLSHNNFHGQISSDWGR-FPQLGTLDFSVNNITGSIPPE----IGNS-SKLQVLNLSSNHIGGKIPMELG----R-LSSL 494 (775)
Q Consensus 426 ~l~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~Ls~n~l~~~~~~~l~----~-l~~L 494 (775)
+.. +++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+. . .++|
T Consensus 75 --------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 140 (362)
T 3goz_A 75 --------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140 (362)
T ss_dssp --------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred --------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence 001 145555555555555443332 2333 5566666666665544443332 2 2466
Q ss_pred CEEEcCCCcCcccCCc----CccCCC-CCCEEECCCCcccccCCccc----cCc-CCCCEEEccCCcCccCC----chhH
Q 043943 495 NKLILNKNQLFGSLPP----EIGTLT-ELELLDLSENRLSNAIPGSL----GNL-LKVHYLNLSNNEFSHKI----PTQF 560 (775)
Q Consensus 495 ~~L~L~~n~~~~~~~~----~~~~l~-~L~~L~ls~n~l~~~~~~~~----~~l-~~L~~L~Ls~n~l~~~~----~~~~ 560 (775)
++|+|++|.+++..+. .+..++ +|++|++++|++++..+..+ ..+ ++|++|+|++|.+++.. +..+
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 6666666666533222 223333 66666666666655444322 233 46666666666666532 3333
Q ss_pred HhhhccccEEECcCCcCcccCC----ccccCCCCCcEEeCCCCcCcccC-------CccccCCCCCCEEeCCCCccccc
Q 043943 561 EKLQLQLSELDLSQNFLEGEIP----SQICNMESLVKLNLSYNQLSGFI-------PNCFEDMHGLSSIDISYNRLQGP 628 (775)
Q Consensus 561 ~~l~~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~ls~n~l~~~~-------p~~l~~l~~L~~l~ls~n~l~~~ 628 (775)
....++|++|+|++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.||+++|++...
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3333367777777777665433 33455677777777777744332 23456667777788888876654
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.4e-23 Score=218.35 Aligned_cols=222 Identities=19% Similarity=0.145 Sum_probs=148.3
Q ss_pred CCCEEECCCCCCcccCcccccCC--CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcccccc-CcccccCCCCCCEE
Q 043943 84 DLLFLNLFNNELFGIIPPQISQL--FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGS-IPQSLGNLSKQSLL 160 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l--~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L 160 (775)
.++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888888765 4455666 7888888888888766554 55688888888888887654 66677788888888
Q ss_pred EcccCcCcccCCcccCCCCCCCEEeccCC-cCccc-CCcccCCCCCccEEEcccc-cCccc-cCccCCCCC-CCCEEEcc
Q 043943 161 SLYNNSLSGYIPPVIGNLISLSTLDLSLN-QLIGS-VPFFLGNLTNLVTLHLFNN-SLSGF-IPSTLGKLK-CLSNLNMS 235 (775)
Q Consensus 161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~-~L~~L~l~ 235 (775)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888777777777777888888888877 45542 4445666777777777777 66643 355566677 77777777
Q ss_pred cc--ccc-ccCCccccCCCCCcEEEccccc-CCCCCCccccCCCCCCEEEcccCc-ccccCCccCCCCCCCCeeeccCc
Q 043943 236 MN--HLS-GAIPSSIGNVRNLRSLFLYSNE-LSGSIPKEIGNLRSLSNLDLSINR-LNGVIPSSIGNSNNLSILYLYSN 309 (775)
Q Consensus 236 ~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n 309 (775)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77 333 3344455566677777777666 555555566666666666666663 22221123445555555655555
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.7e-21 Score=192.03 Aligned_cols=179 Identities=26% Similarity=0.317 Sum_probs=116.7
Q ss_pred CCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCC
Q 043943 446 LGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSE 525 (775)
Q Consensus 446 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~ 525 (775)
.++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|+|++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 344445544444 2333322 3566666666666655555566666666666666666655555566666666666666
Q ss_pred CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccC
Q 043943 526 NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFI 605 (775)
Q Consensus 526 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 605 (775)
|.+++..+..|..+++|++|+|++|++++..+..+..+. +|+.|+|++|++++..+..|..+++|+.|++++|++++..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 666665556666666666666666666655554555555 6777777777777666667777788888888888888777
Q ss_pred CccccCCCCCCEEeCCCCccccc
Q 043943 606 PNCFEDMHGLSSIDISYNRLQGP 628 (775)
Q Consensus 606 p~~l~~l~~L~~l~ls~n~l~~~ 628 (775)
+..+..+++|+.|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 77777788888888888888775
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.8e-21 Score=192.86 Aligned_cols=197 Identities=19% Similarity=0.171 Sum_probs=147.9
Q ss_pred CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCcc-ccccCcccccCCCCCCEEEccc-CcCcccCCcccCCCCCCCEE
Q 043943 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNC-LNGSIPQSLGNLSKQSLLSLYN-NSLSGYIPPVIGNLISLSTL 184 (775)
Q Consensus 107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L 184 (775)
++|++|++++|.+++..+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999997777789999999999999997 8766667889999999999998 88888877888888889999
Q ss_pred eccCCcCcccCCcccCCCCCcc---EEEcccc-cCccccCccCCCCCCCC-EEEcccccccccCCccccCCCCCcEEEcc
Q 043943 185 DLSLNQLIGSVPFFLGNLTNLV---TLHLFNN-SLSGFIPSTLGKLKCLS-NLNMSMNHLSGAIPSSIGNVRNLRSLFLY 259 (775)
Q Consensus 185 ~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 259 (775)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++...+..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888888875 554 77777777 8888888 77777667777788888 8888887777333333333 677777777
Q ss_pred ccc-CCCCCCccccCC-CCCCEEEcccCcccccCCccCCCCCCCCeeeccCc
Q 043943 260 SNE-LSGSIPKEIGNL-RSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSN 309 (775)
Q Consensus 260 ~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 309 (775)
+|. +++..+..|..+ ++|++|++++|++++..+. .+++|+.|++.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 773 665555566666 7777777777776643322 3455666665543
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.1e-23 Score=218.30 Aligned_cols=223 Identities=20% Similarity=0.185 Sum_probs=101.4
Q ss_pred EECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc----hhccCCC-CCCEEECCCccccccCcccccCC-----CCC
Q 043943 88 LNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP----PEIGQLS-FLSELSLYSNCLNGSIPQSLGNL-----SKQ 157 (775)
Q Consensus 88 L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~L 157 (775)
++++.|.+++.+|..+...++|++|++++|.+.+..+ ..|..++ +|++|+|++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555444444445555555555554443 4444555 55555555555554444444332 555
Q ss_pred CEEEcccCcCcccCCcc----cCCC-CCCCEEeccCCcCcccCCccc----CC-CCCccEEEcccccCcccc----CccC
Q 043943 158 SLLSLYNNSLSGYIPPV----IGNL-ISLSTLDLSLNQLIGSVPFFL----GN-LTNLVTLHLFNNSLSGFI----PSTL 223 (775)
Q Consensus 158 ~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~----~~~l 223 (775)
++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.++... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 55555555554443332 2222 455555555555543333222 22 235555555555554321 1222
Q ss_pred CCCC-CCCEEEcccccccccCCccc----cCC-CCCcEEEcccccCCCC----CCccccC-CCCCCEEEcccCcccccCC
Q 043943 224 GKLK-CLSNLNMSMNHLSGAIPSSI----GNV-RNLRSLFLYSNELSGS----IPKEIGN-LRSLSNLDLSINRLNGVIP 292 (775)
Q Consensus 224 ~~l~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~~~~~~~ 292 (775)
..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 2333 55555555555544333222 222 3555555555555432 2222322 2355555555555543322
Q ss_pred ----ccCCCCCCCCeeeccCcc
Q 043943 293 ----SSIGNSNNLSILYLYSNQ 310 (775)
Q Consensus 293 ----~~l~~l~~L~~L~l~~n~ 310 (775)
..+..+++|+.|++++|.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHhcCCCccEEEeccCC
Confidence 122334444444444444
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.1e-23 Score=220.76 Aligned_cols=188 Identities=21% Similarity=0.318 Sum_probs=125.7
Q ss_pred CCCCCCCEEEcccCcccc----cCCccccCCCCCcEEEccCCCccCcCChhh----hcC---------CCCCEEEcCCCc
Q 043943 441 GRFPQLGTLDFSVNNITG----SIPPEIGNSSKLQVLNLSSNHIGGKIPMEL----GRL---------SSLNKLILNKNQ 503 (775)
Q Consensus 441 ~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l----~~l---------~~L~~L~L~~n~ 503 (775)
..+++|++|++++|.+++ .+|..+..+++|++|+|++|.+.+..+..+ ..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456667777777766665 355566677777777777777654333333 233 677777777777
Q ss_pred Cc-ccCC---cCccCCCCCCEEECCCCcccc-----cCCccccCcCCCCEEEccCCcCc----cCCchhHHhhhccccEE
Q 043943 504 LF-GSLP---PEIGTLTELELLDLSENRLSN-----AIPGSLGNLLKVHYLNLSNNEFS----HKIPTQFEKLQLQLSEL 570 (775)
Q Consensus 504 ~~-~~~~---~~~~~l~~L~~L~ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~~L~~L 570 (775)
++ +.++ ..+..+++|++|++++|.++. ..+..+..+++|+.|+|++|.++ ..+|..+..++ +|+.|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP-NLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT-TCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC-CcCEE
Confidence 75 2333 345566777777777777762 23336667777777777777775 45566666666 78888
Q ss_pred ECcCCcCccc----CCcccc--CCCCCcEEeCCCCcCcc----cCCccc-cCCCCCCEEeCCCCcccccC
Q 043943 571 DLSQNFLEGE----IPSQIC--NMESLVKLNLSYNQLSG----FIPNCF-EDMHGLSSIDISYNRLQGPV 629 (775)
Q Consensus 571 ~Ls~n~l~~~----~p~~l~--~l~~L~~L~ls~n~l~~----~~p~~l-~~l~~L~~l~ls~n~l~~~~ 629 (775)
+|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8888877755 455663 37888888888888887 466666 55788888888888776544
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.4e-23 Score=222.54 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=63.3
Q ss_pred CCCcEEeCCCccce-eecC---cCcCCCCCCCEEEcccCcccc-----cCCccccCCCCCcEEEccCCCcc----CcCCh
Q 043943 420 PTLSFLDLSHNNFH-GQIS---SDWGRFPQLGTLDFSVNNITG-----SIPPEIGNSSKLQVLNLSSNHIG----GKIPM 486 (775)
Q Consensus 420 ~~L~~L~l~~n~l~-~~~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~Ls~n~l~----~~~~~ 486 (775)
++|++|++++|++. ..++ ..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 45555555555543 1111 223344455555555554441 12224445555555555555553 33444
Q ss_pred hhhcCCCCCEEEcCCCcCccc----CCcCc--cCCCCCCEEECCCCcccc----cCCccc-cCcCCCCEEEccCCcCccC
Q 043943 487 ELGRLSSLNKLILNKNQLFGS----LPPEI--GTLTELELLDLSENRLSN----AIPGSL-GNLLKVHYLNLSNNEFSHK 555 (775)
Q Consensus 487 ~l~~l~~L~~L~L~~n~~~~~----~~~~~--~~l~~L~~L~ls~n~l~~----~~~~~~-~~l~~L~~L~Ls~n~l~~~ 555 (775)
.+..+++|++|+|++|++++. ++..+ ..+++|+.|+|++|.+++ .+|..+ .++++|++|+|++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 445555555555555555433 22333 224555555555555554 233333 3345555555555555544
Q ss_pred C
Q 043943 556 I 556 (775)
Q Consensus 556 ~ 556 (775)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=6.2e-21 Score=196.35 Aligned_cols=193 Identities=26% Similarity=0.371 Sum_probs=104.0
Q ss_pred CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943 80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL 159 (775)
Q Consensus 80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 159 (775)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++. + .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCE
Confidence 345666777777776653 23 466667777777777766643 32 66667777777777766532 2 4666666666
Q ss_pred EEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccc
Q 043943 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239 (775)
Q Consensus 160 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 239 (775)
|++++|.+++.. .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 666666665432 25555666666666655553322 4455555555555555553322 44555555555555554
Q ss_pred cccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 288 (775)
.+..+ +..+++|++|++++|.+++.. .+..+++|++|++++|.++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 43221 444444444444444444322 1444444444444444443
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=9.1e-21 Score=195.10 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=124.9
Q ss_pred ECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCc
Q 043943 89 NLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS 168 (775)
Q Consensus 89 ~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 168 (775)
.+..+.+++.+ .+..+++|++|++++|.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 34444444322 24467788888888887773 44 57778888888888888774433 777777777777777776
Q ss_pred ccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCcccc
Q 043943 169 GYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIG 248 (775)
Q Consensus 169 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 248 (775)
+. ..+..+++|++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +.
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~ 170 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LA 170 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hc
Confidence 54 3566677777777777766643 22 5666666666666666664432 5566666666666666553222 55
Q ss_pred CCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCcccc
Q 043943 249 NVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLS 312 (775)
Q Consensus 249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 312 (775)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55666666666665553322 455555555555555555433 2445555555555555554
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.4e-20 Score=182.02 Aligned_cols=156 Identities=24% Similarity=0.243 Sum_probs=97.3
Q ss_pred CCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCC
Q 043943 44 KNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKI 123 (775)
Q Consensus 44 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~ 123 (775)
...|.|.++.|...+ +. .+| ..-.++|++|++++|.+++..+..|..+++|++|++++|.+.+..
T Consensus 4 ~C~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 68 (208)
T 2o6s_A 4 RCSCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP 68 (208)
T ss_dssp TCEEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCEECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC
Confidence 345899999996422 11 122 122357788888888877666666777777888888777777555
Q ss_pred chhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCC
Q 043943 124 PPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLT 203 (775)
Q Consensus 124 p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 203 (775)
+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 55567777777777777777755555566666666666666666655555555555555555555555544443444455
Q ss_pred CccEEEccccc
Q 043943 204 NLVTLHLFNNS 214 (775)
Q Consensus 204 ~L~~L~l~~n~ 214 (775)
+|++|++++|.
T Consensus 149 ~L~~L~l~~N~ 159 (208)
T 2o6s_A 149 SLQYIWLHDNP 159 (208)
T ss_dssp TCCEEECCSCC
T ss_pred CccEEEecCCC
Confidence 55555555543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=8.6e-20 Score=191.72 Aligned_cols=188 Identities=18% Similarity=0.086 Sum_probs=92.6
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc-hhccCCCCCCE-EECCCccccccCcccccCCCCCCEE
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP-PEIGQLSFLSE-LSLYSNCLNGSIPQSLGNLSKQSLL 160 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L 160 (775)
+++++|+|++|+++.+.+.+|.++++|++|+|++|.+.+.+| ..|.++++|++ +.+.+|+++...|..|.++++|++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~- 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY- 108 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE-
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc-
Confidence 356666666666654444455556666666666655543333 23455555443 333444444444444444444444
Q ss_pred EcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEccc-ccCccccCccCCCCC-CCCEEEccccc
Q 043943 161 SLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFN-NSLSGFIPSTLGKLK-CLSNLNMSMNH 238 (775)
Q Consensus 161 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~ 238 (775)
|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.
T Consensus 109 -----------------------L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 109 -----------------------LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp -----------------------EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred -----------------------ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 44444444433333333444455555543 234444444444443 45556666666
Q ss_pred ccccCCccccCCCCCcEEEccc-ccCCCCCCccccCCCCCCEEEcccCcccccCCccC
Q 043943 239 LSGAIPSSIGNVRNLRSLFLYS-NELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSI 295 (775)
Q Consensus 239 ~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 295 (775)
++.. +.......+|++|++.+ |.++...+..|..+++|++|++++|+++...+..+
T Consensus 166 i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 166 IQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp CCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 6532 33333344566666653 44443323345666666666666666664433333
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.8e-19 Score=174.19 Aligned_cols=181 Identities=24% Similarity=0.287 Sum_probs=125.8
Q ss_pred CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC
Q 043943 86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN 165 (775)
Q Consensus 86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 165 (775)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 456667766653 34333 457888888888888666666778888888888888887665566777788888888888
Q ss_pred cCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCc
Q 043943 166 SLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPS 245 (775)
Q Consensus 166 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 245 (775)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 777666666777777777777777777655555677777777777777777666666677777777777777554
Q ss_pred cccCCCCCcEEEcccccCCCCCCccccCCCC
Q 043943 246 SIGNVRNLRSLFLYSNELSGSIPKEIGNLRS 276 (775)
Q Consensus 246 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 276 (775)
..+++|+.|++..|.++|.+|..++.++.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 23445666666666666666666554443
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=7.2e-19 Score=184.70 Aligned_cols=199 Identities=18% Similarity=0.132 Sum_probs=95.8
Q ss_pred CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCC-cccCCCCCCCE-Eecc
Q 043943 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIP-PVIGNLISLST-LDLS 187 (775)
Q Consensus 110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l~ 187 (775)
++++.+++.++ .+|..+ .+++++|+|++|+++.+.+.+|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34445555554 344433 2355555555555553333445555555555555555543322 34455555443 3334
Q ss_pred CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccc-ccccccCCccccCCC-CCcEEEcccccCCC
Q 043943 188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSM-NHLSGAIPSSIGNVR-NLRSLFLYSNELSG 265 (775)
Q Consensus 188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~ 265 (775)
.|+++...|..|..+++|++|++++|.+....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 4555555555566666666666666666555444454555555555543 334433333343332 34555555555542
Q ss_pred CCCccccCCCCCCEEEccc-CcccccCCccCCCCCCCCeeeccCcccc
Q 043943 266 SIPKEIGNLRSLSNLDLSI-NRLNGVIPSSIGNSNNLSILYLYSNQLS 312 (775)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 312 (775)
++.......+|++|++.+ |.++...+..|..+++|++|++++|+++
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 222222334455555542 3333333334444445555555555444
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=2.5e-19 Score=197.60 Aligned_cols=203 Identities=26% Similarity=0.317 Sum_probs=117.7
Q ss_pred CCCCC-----cccce-eeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcC
Q 043943 43 KKNLC-----AWSGI-YCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSA 116 (775)
Q Consensus 43 ~~~~c-----~w~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~ 116 (775)
+.++| .|.|+ .|. .++++.++++++.+.+ +| ..+ +++|++|+|++|.++ .+| ..+++|++|++++
T Consensus 39 ~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACD 109 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCS
T ss_pred cCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccC
Confidence 34566 69998 563 3466667777666655 44 222 255666666666665 344 3355666666666
Q ss_pred CCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCC
Q 043943 117 NKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVP 196 (775)
Q Consensus 117 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 196 (775)
|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|
T Consensus 110 N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-------------------------lp 156 (571)
T 3cvr_A 110 NRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-------------------------LP 156 (571)
T ss_dssp SCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-------------------------CC
T ss_pred CCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-------------------------CC
Confidence 66554 444 433 56666666665553 333 34445555555544443 22
Q ss_pred cccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCC-------cEEEcccccCCCCCCc
Q 043943 197 FFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNL-------RSLFLYSNELSGSIPK 269 (775)
Q Consensus 197 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~ 269 (775)
. .+++|++|++++|.+++ +|. |. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|.
T Consensus 157 ~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~ 224 (571)
T 3cvr_A 157 E---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE 224 (571)
T ss_dssp C---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCG
T ss_pred C---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCH
Confidence 2 33455555555555554 233 33 55666666666555 3444 332 44 88888888887 5677
Q ss_pred cccCCCCCCEEEcccCcccccCCccCCCCC
Q 043943 270 EIGNLRSLSNLDLSINRLNGVIPSSIGNSN 299 (775)
Q Consensus 270 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 299 (775)
.+..+++|+.|++++|.+++..|..+..+.
T Consensus 225 ~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 225 NILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 777788888888888888887777665543
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=168.92 Aligned_cols=158 Identities=20% Similarity=0.291 Sum_probs=123.6
Q ss_pred cEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCC-cCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccC
Q 043943 471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLP-PEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSN 549 (775)
Q Consensus 471 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 549 (775)
+.+++++|.++. +|..+ .+.+++|+|++|++++..+ ..+..+++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 356666666653 34433 2345677777777765543 3467777888888888888777777788888888888888
Q ss_pred CcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccC
Q 043943 550 NEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPV 629 (775)
Q Consensus 550 n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~ 629 (775)
|++++..+..+..+. +|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.+
T Consensus 91 N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 888877777777777 8888888888888888888999999999999999999988999999999999999999999888
Q ss_pred CCC
Q 043943 630 PFS 632 (775)
Q Consensus 630 p~~ 632 (775)
+..
T Consensus 170 ~l~ 172 (220)
T 2v70_A 170 YLA 172 (220)
T ss_dssp GGH
T ss_pred chH
Confidence 754
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.1e-18 Score=167.72 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=111.1
Q ss_pred cEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCC
Q 043943 471 QVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNN 550 (775)
Q Consensus 471 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 550 (775)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555554 2333332 46666666666666555556666677777777777776666667777777777777777
Q ss_pred cCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943 551 EFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630 (775)
Q Consensus 551 ~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 630 (775)
+++...+..+..++ +|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.+.++
T Consensus 91 ~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KITELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 77654444455666 77778888888877777888888888888888888888888888888889999999998887665
Q ss_pred C
Q 043943 631 F 631 (775)
Q Consensus 631 ~ 631 (775)
.
T Consensus 170 l 170 (220)
T 2v9t_B 170 L 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3.9e-18 Score=188.07 Aligned_cols=187 Identities=26% Similarity=0.318 Sum_probs=140.0
Q ss_pred CCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEecc
Q 043943 108 KLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLS 187 (775)
Q Consensus 108 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 187 (775)
+|++|++++|.+++ +|..+ .++|++|+|++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 44433 255666666666666 444 345666777777776665 344 444 78888888
Q ss_pred CCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCC
Q 043943 188 LNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSI 267 (775)
Q Consensus 188 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 267 (775)
+|.+++ +|. .+++|+.|++++|.++++ |. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 888876 554 578999999999999874 44 57899999999999996 666 65 89999999999998 66
Q ss_pred CccccCCCCC-------CEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCC
Q 043943 268 PKEIGNLRSL-------SNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNL 322 (775)
Q Consensus 268 ~~~l~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 322 (775)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66 554 77 99999999999 567778789999999999999998888776554
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.5e-18 Score=165.51 Aligned_cols=158 Identities=23% Similarity=0.246 Sum_probs=94.9
Q ss_pred CCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCC
Q 043943 42 TKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSG 121 (775)
Q Consensus 42 ~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~ 121 (775)
.+.+.|.|.++.|...+ + ..+| . .-.++|++|+|++|.+++..+..|..+++|++|+|++|.+..
T Consensus 14 ~~~~~Cs~~~v~c~~~~-----------l-~~ip-~--~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKR-----------H-ASVP-A--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp CTTCEEETTEEECTTSC-----------C-SSCC-S--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCEEeCCEeEccCCC-----------c-CccC-C--CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 46788999999996321 1 2233 1 112677777777777777667777777777777777777765
Q ss_pred CCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCC
Q 043943 122 KIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGN 201 (775)
Q Consensus 122 ~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 201 (775)
..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 55555667777777777777776555555566666666666666555 33444455555555555555544333334444
Q ss_pred CCCccEEEcccccC
Q 043943 202 LTNLVTLHLFNNSL 215 (775)
Q Consensus 202 l~~L~~L~l~~n~l 215 (775)
+++|+.|++++|.+
T Consensus 158 l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 158 LSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTCCEEECTTSCB
T ss_pred CCCCCEEEeeCCCc
Confidence 44444444444443
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3.6e-18 Score=190.70 Aligned_cols=190 Identities=23% Similarity=0.310 Sum_probs=111.4
Q ss_pred CCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEccc
Q 043943 85 LLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYN 164 (775)
Q Consensus 85 L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 164 (775)
+..+.+..+.+.+..+ +..+++|++|++++|.+.. +| .+..+++|++|+|++|.+.+..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444455555443322 4456666666666666653 33 36666666666666666664433 66666666666666
Q ss_pred CcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCC
Q 043943 165 NSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIP 244 (775)
Q Consensus 165 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 244 (775)
|.+.+. ..+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 666542 2456666666666666666532 2355666666666666666644 455666666666666666654443
Q ss_pred ccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccccc
Q 043943 245 SSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGV 290 (775)
Q Consensus 245 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 290 (775)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 55666666666666666542 2356666666666666666543
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.4e-18 Score=183.10 Aligned_cols=160 Identities=26% Similarity=0.248 Sum_probs=84.9
Q ss_pred CcEEEccCCCccCcCChhhh-cCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEcc
Q 043943 470 LQVLNLSSNHIGGKIPMELG-RLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLS 548 (775)
Q Consensus 470 L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls 548 (775)
++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444444333343 44444444444444444444444445555555555555544444445555555555555
Q ss_pred CCcCccCCchhHHhhhccccEEECcCCcCcccCCccc---cCCCCCcEEeCCCCcCcccCCccccCCCC--CCEEeCCCC
Q 043943 549 NNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI---CNMESLVKLNLSYNQLSGFIPNCFEDMHG--LSSIDISYN 623 (775)
Q Consensus 549 ~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~~~~p~~l~~l~~--L~~l~ls~n 623 (775)
+|++++..|..|..+. +|+.|+|++|++++..+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555544444454444 55555555555553333333 45667777777777777665566666655 367777777
Q ss_pred cccccCC
Q 043943 624 RLQGPVP 630 (775)
Q Consensus 624 ~l~~~~p 630 (775)
++.|.+.
T Consensus 200 ~~~C~C~ 206 (361)
T 2xot_A 200 PLECDCK 206 (361)
T ss_dssp CEECCHH
T ss_pred CccCCcC
Confidence 7776654
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.6e-18 Score=175.02 Aligned_cols=170 Identities=25% Similarity=0.340 Sum_probs=78.3
Q ss_pred CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEE
Q 043943 105 QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTL 184 (775)
Q Consensus 105 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 184 (775)
.+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++. ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 444555555555544422 2 24445555555555555543222 44445555555554444432 124444555555
Q ss_pred eccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCC
Q 043943 185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS 264 (775)
Q Consensus 185 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 264 (775)
++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555544432 2244445555555555554433 334444555555555554443322 444445555555555444
Q ss_pred CCCCccccCCCCCCEEEcccCccc
Q 043943 265 GSIPKEIGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 265 ~~~~~~l~~l~~L~~L~l~~n~~~ 288 (775)
+ ++ .+..+++|+.|++++|.++
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 2 22 2444555555555555444
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=7e-18 Score=165.32 Aligned_cols=137 Identities=26% Similarity=0.327 Sum_probs=84.0
Q ss_pred CCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEE
Q 043943 492 SSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELD 571 (775)
Q Consensus 492 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~ 571 (775)
++|++|+|++|++++..|..+..+++|++|+|++|.+....+..|..+++|+.|+|++|++++..+..+..++ +|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~-~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV-HLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch-hhCeEe
Confidence 4455555555555544444455555555555555555444444455555555555555555544444444554 666666
Q ss_pred CcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943 572 LSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630 (775)
Q Consensus 572 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 630 (775)
|++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6666666 566666777777777777777777666677777788888888888877665
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=2.6e-18 Score=174.98 Aligned_cols=173 Identities=31% Similarity=0.350 Sum_probs=142.7
Q ss_pred cCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCC
Q 043943 79 FSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQS 158 (775)
Q Consensus 79 ~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 158 (775)
+..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 45677889999999888754 3 47888999999999998885443 8889999999999998875 33 488899999
Q ss_pred EEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc
Q 043943 159 LLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH 238 (775)
Q Consensus 159 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 238 (775)
+|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999988875 5678889999999999988764 467888999999999999887654 8889999999999999
Q ss_pred ccccCCccccCCCCCcEEEcccccCCC
Q 043943 239 LSGAIPSSIGNVRNLRSLFLYSNELSG 265 (775)
Q Consensus 239 ~~~~~~~~l~~l~~L~~L~l~~n~~~~ 265 (775)
+++. + .+..+++|+.|++++|.++.
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 8853 3 48889999999999998874
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.6e-17 Score=161.53 Aligned_cols=132 Identities=27% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEc
Q 043943 83 PDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSL 162 (775)
Q Consensus 83 ~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 162 (775)
+++++|++++|.+++..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.++...+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45666666666666555555666666666666666666555555666666666666666655433333445555555555
Q ss_pred ccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEccccc
Q 043943 163 YNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNS 214 (775)
Q Consensus 163 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 214 (775)
++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 5555544444444444444444444444443333333333444444444333
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=162.75 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=102.8
Q ss_pred EEEcccCcccccCCccccCCCCCcEEEccCCCccCcCC-hhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCC
Q 043943 448 TLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIP-MELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSEN 526 (775)
Q Consensus 448 ~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n 526 (775)
.+++++|.++. +|..+ ...+++|++++|++++..+ ..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555542 33332 2244566666666665533 33566666667777666666655556667777777777777
Q ss_pred cccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccC
Q 043943 527 RLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFI 605 (775)
Q Consensus 527 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 605 (775)
.+++..+..|..+++|++|+|++|++++..|..+..+. +|+.|+|++|++++..|..|..+++|+.|++++|.+.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 77666666677777777777777777766666666666 7777777777777777788888888888888888877653
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=7e-18 Score=188.36 Aligned_cols=192 Identities=23% Similarity=0.334 Sum_probs=142.8
Q ss_pred CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL 186 (775)
Q Consensus 107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 186 (775)
..+..+.+..+.+....+ +..+++|++|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345556677776664433 5678899999999998874 34 58889999999999998887655 788888888888
Q ss_pred cCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCC
Q 043943 187 SLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGS 266 (775)
Q Consensus 187 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 266 (775)
++|.+.+ ++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++.
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8888774 33 577888888888888887754 4577778888888888877754 5577777788888887777765
Q ss_pred CCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCC
Q 043943 267 IPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGS 314 (775)
Q Consensus 267 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 314 (775)
.| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 55 77777777777777777654 3466777777777777777643
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=2.5e-19 Score=205.49 Aligned_cols=201 Identities=21% Similarity=0.196 Sum_probs=76.5
Q ss_pred CCCcHHHHHHHHHHHhhcCcCCCCcCCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCC
Q 043943 6 SSDSTEEARALLKWKTSLQIHSRSLLPSWTLSPVNATKKNLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDL 85 (775)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L 85 (775)
.+.+..++++|+++..+........-..|. ......+.|.+..+.. .+++.++|..+.+... + ...+
T Consensus 127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~------~~~l 193 (727)
T 4b8c_D 127 KSLVDCTKQALMEMADTLTDSKTAKKQQPT-----GDSTPSGTATNSAVST-PLTPKIELFANGKDEA-N------QALL 193 (727)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred hhccccchhhhhhhhhhcccccCcccCCCc-----CCCCccccCCCceecC-CccceEEeeCCCCCcc-h------hhHh
Confidence 344567788999999887542222233454 2344567898887754 6788888887776542 2 1233
Q ss_pred CEEECCCCCCcc---------cCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCC
Q 043943 86 LFLNLFNNELFG---------IIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSK 156 (775)
Q Consensus 86 ~~L~ls~~~~~~---------~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 156 (775)
+.++|+.+.+.+ ..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++
T Consensus 194 ~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 271 (727)
T 4b8c_D 194 QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSN 271 (727)
T ss_dssp ----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTT
T ss_pred hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCC
Confidence 444455444432 23445555666666666666655 44444555666666666666655 55555555555
Q ss_pred CCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccC
Q 043943 157 QSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTL 223 (775)
Q Consensus 157 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 223 (775)
|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..|+.+++|++|+|++|.+++.+|..+
T Consensus 272 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 272 LRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 555555555555 33555555555555555555544 344445555555555555555554444443
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.4e-17 Score=173.72 Aligned_cols=128 Identities=26% Similarity=0.286 Sum_probs=70.5
Q ss_pred CEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCccccc-CCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccC
Q 043943 110 QYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLG-NLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSL 188 (775)
Q Consensus 110 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 188 (775)
++++++++.+. .+|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46677777666 3454432 3466677777666655555554 566666666666666555555555555555555555
Q ss_pred CcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccccc
Q 043943 189 NQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLS 240 (775)
Q Consensus 189 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (775)
|.++...+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 5555444444455555555555555555444444444444444444444444
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=2.8e-18 Score=178.64 Aligned_cols=286 Identities=14% Similarity=0.070 Sum_probs=181.0
Q ss_pred CCCCCCEEECCCCCCcccCcccccC-CCCCCEEeCcCCCCC--CCCchhccCCCCCCEEECCCccccccCcccccC----
Q 043943 81 SFPDLLFLNLFNNELFGIIPPQISQ-LFKLQYLDLSANKLS--GKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGN---- 153 (775)
Q Consensus 81 ~l~~L~~L~ls~~~~~~~~~~~~~~-l~~L~~L~ls~n~~~--~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~---- 153 (775)
.+.+++.|.++++ +.......+.. +++|++|||++|.+. ...+. .++.++.+.+..+.+ .+..|.+
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccc
Confidence 3557788888764 22121223333 788899999888876 22221 222245555555533 2355666
Q ss_pred ----CCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEccccc----CccccCccCCC
Q 043943 154 ----LSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNS----LSGFIPSTLGK 225 (775)
Q Consensus 154 ----l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~----l~~~~~~~l~~ 225 (775)
+++|+.|++.+ .++.+...+|.+|++|+.|+++.|.+....+.+|..+.++..+.+..+. ...+...+|.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 88888888888 7887888888888888888888888776777788887777777766532 22334455666
Q ss_pred CCCCC-EEEccccc-ccccCCccccCCCCCcEEEcccccCCCCCCccc-cCCCCCCEEEcccCcccccCCccCCCCCCCC
Q 043943 226 LKCLS-NLNMSMNH-LSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEI-GNLRSLSNLDLSINRLNGVIPSSIGNSNNLS 302 (775)
Q Consensus 226 l~~L~-~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 302 (775)
+..|+ .+.+.... +.......-....+++.+.+.++-.. .....+ ..+++|+++++++|.++.+.+.+|.++++|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 77776 44443321 11111111112345566665544211 111111 1367777777777777766667777777777
Q ss_pred eeeccCccccCCCCccCCCCCCCC-eeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEE
Q 043943 303 ILYLYSNQLSGSIPKEIGNLKCLF-DLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLL 377 (775)
Q Consensus 303 ~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 377 (775)
.+++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.++++.|.+....+..|.++++|+.+.
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777776 6656666777777787 777777 66666667777888888888877777766666777787777764
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.2e-17 Score=156.71 Aligned_cols=151 Identities=18% Similarity=0.269 Sum_probs=78.1
Q ss_pred CCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEc
Q 043943 468 SKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNL 547 (775)
Q Consensus 468 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 547 (775)
++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444444 222 3444444444444444332 1123444555555555555555444455555555555555
Q ss_pred cCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCccc
Q 043943 548 SNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQ 626 (775)
Q Consensus 548 s~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~ 626 (775)
++|.+++..|..+..++ +|++|++++|...+.+| .+..+++|+.|++++|++++.. .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 55555555555555555 56666666665222333 4666666666666666666532 5666667777777777654
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.3e-17 Score=156.54 Aligned_cols=151 Identities=19% Similarity=0.300 Sum_probs=68.8
Q ss_pred CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943 106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185 (775)
Q Consensus 106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 185 (775)
+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 334444444444444 222 34444444444444443321 12344444444444444444444444444444555555
Q ss_pred ccCCcCcccCCcccCCCCCccEEEccccc-CccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCC
Q 043943 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNS-LSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS 264 (775)
Q Consensus 186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 264 (775)
+++|.+++..+..+..+++|++|++++|. +.. ++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 55554444444444455555555555554 332 22 34555555555555555543 22 4555566666666665543
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.8e-17 Score=156.11 Aligned_cols=133 Identities=24% Similarity=0.349 Sum_probs=79.2
Q ss_pred CEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCc-cccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECc
Q 043943 495 NKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPG-SLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS 573 (775)
Q Consensus 495 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls 573 (775)
+.+++++|.++ .+|..+. .+|++|++++|.+++..+. .+..+++|++|+|++|++++..|..+..+. +|+.|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc-cCCEEECC
Confidence 34444444443 3333322 2455555555555544432 355555566666666665555555555555 66666666
Q ss_pred CCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943 574 QNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF 631 (775)
Q Consensus 574 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 631 (775)
+|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.|.++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 6666666666666677777777777777777677777777777777777777766654
No 118
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2.2e-15 Score=159.80 Aligned_cols=266 Identities=11% Similarity=0.050 Sum_probs=171.0
Q ss_pred CCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEE
Q 043943 105 QLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTL 184 (775)
Q Consensus 105 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 184 (775)
.+..++.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3456666666543 333445556654 5777776655 554555566663 577776664 5555666667777777777
Q ss_pred eccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCC
Q 043943 185 DLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELS 264 (775)
Q Consensus 185 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 264 (775)
+++.|.++......|. +.+|+.+.+.. .+..+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7776666644444554 46777777763 355566667777777777777654 44455555655 567777773 3454
Q ss_pred CCCCccccCCCCCCEEEcccCccc-----ccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCcc
Q 043943 265 GSIPKEIGNLRSLSNLDLSINRLN-----GVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVI 339 (775)
Q Consensus 265 ~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 339 (775)
.....+|.+|++|+.+++.++.+. ...+..|.++++|+.+.+.+ .++.+...+|.++++|+.+.+..+ ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 455566777777777777766554 35556777777888887773 455555667777888888888544 55556
Q ss_pred CCcCCCCCcCcEEEccCCcCCCCchhhccCCC-CCcEEEecccee
Q 043943 340 PSSIGNLRNLRLLYLYRNELSGSIPQAIGNLV-ELVSLLLGFNYF 383 (775)
Q Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 383 (775)
..+|.++ +|+.+++.+|.........|.+++ .++.+.+..+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6677777 888888888776655556666664 677777766544
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=1e-17 Score=174.30 Aligned_cols=285 Identities=13% Similarity=0.022 Sum_probs=211.3
Q ss_pred CCCCCCEEeCcCCCCCCCCchhccC-CCCCCEEECCCcccc--ccCcccccCCCCCCEEEcccCcCcccCCcccCC----
Q 043943 105 QLFKLQYLDLSANKLSGKIPPEIGQ-LSFLSELSLYSNCLN--GSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGN---- 177 (775)
Q Consensus 105 ~l~~L~~L~ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---- 177 (775)
.+.+|+.|+++++- .......+.. +++|++|||++|++. ...+..+ +.++.+.+..+. +...+|.+
T Consensus 23 ~~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETT
T ss_pred hhCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccc
Confidence 35678999998762 2111223444 889999999999987 2222222 224555555553 34566777
Q ss_pred ----CCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEccccc----ccccCCccccC
Q 043943 178 ----LISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNH----LSGAIPSSIGN 249 (775)
Q Consensus 178 ----l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~----~~~~~~~~l~~ 249 (775)
|++|+.|++.. .++.+.+.+|.+|++|+.+++.+|.+..+.+.+|.++.++..+.+.... ........|.+
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 99999999999 7887778889999999999999999998989999998888888776532 22233455667
Q ss_pred CCCCc-EEEcccccCCCCCCccc----cCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCC
Q 043943 250 VRNLR-SLFLYSNELSGSIPKEI----GNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKC 324 (775)
Q Consensus 250 l~~L~-~L~l~~n~~~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 324 (775)
+..|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++.+|+++.+.+.+|.++++
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 77777 55554321 222211 23566778887765322111111123789999999999999887888999999
Q ss_pred CCeeeCcCCcCcCccCCcCCCCCcCc-EEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccceec
Q 043943 325 LFDLELSMNNLTGVIPSSIGNLRNLR-LLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVRVRM 402 (775)
Q Consensus 325 L~~L~l~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 402 (775)
|++|++.+| +..+.+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++..|.+....+..|.++++|+.++.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999998 7777788999999999 999998 677666789999999999999999999888889999999998864
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=1.6e-17 Score=190.51 Aligned_cols=193 Identities=23% Similarity=0.258 Sum_probs=128.4
Q ss_pred eCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCc
Q 043943 426 DLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLF 505 (775)
Q Consensus 426 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 505 (775)
+++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34444444 45677888999999999999998 67777779999999999999999 78888999999999999999999
Q ss_pred ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccc
Q 043943 506 GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQI 585 (775)
Q Consensus 506 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l 585 (775)
.+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+......+..++|++|.+++.+|..
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 78999999999999999999997 567789999999999999999999999888776534556889999999988865
Q ss_pred cCCCCCcEEeCCCC--------cCcccCCccccCCCCCCEEeCCCCcccccC
Q 043943 586 CNMESLVKLNLSYN--------QLSGFIPNCFEDMHGLSSIDISYNRLQGPV 629 (775)
Q Consensus 586 ~~l~~L~~L~ls~n--------~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~ 629 (775)
|+.|++++| .+.+..+..+.++..+....+++|-+.+..
T Consensus 361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp ----------------------------------------------CCCGGG
T ss_pred -----cceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 455666666 444445555666777788888999876433
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=1.7e-17 Score=166.15 Aligned_cols=167 Identities=24% Similarity=0.278 Sum_probs=78.3
Q ss_pred CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcc
Q 043943 84 DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLY 163 (775)
Q Consensus 84 ~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 163 (775)
+++.++++++.+++.. .+..+++|++|++++|.+. .+| .+..+++|++|++++|.+++..+ +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444445555544321 3445555555555555554 233 35555555555555555553322 4455555555555
Q ss_pred cCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccC
Q 043943 164 NNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAI 243 (775)
Q Consensus 164 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 243 (775)
+|.+++..+ + .. ++|+.|++++|.+++. ..+..+++|++|++++|.+++.
T Consensus 94 ~N~l~~l~~--~------------------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 94 RNRLKNLNG--I------------------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SSCCSCCTT--C------------------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCc--c------------------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 554443211 1 11 3444444444444432 2344444455555555444432
Q ss_pred CccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccc
Q 043943 244 PSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNG 289 (775)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 289 (775)
+ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.++.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 1 344455555555555555433 334555555555555555543
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=3.2e-15 Score=158.55 Aligned_cols=265 Identities=12% Similarity=0.089 Sum_probs=156.5
Q ss_pred CCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEE
Q 043943 129 QLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTL 208 (775)
Q Consensus 129 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 208 (775)
.+..++.+.+..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+....+.+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3456666666553 444445566654 5666666554 555555666664 566666664 3444455566666677777
Q ss_pred EcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCccc
Q 043943 209 HLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLN 288 (775)
Q Consensus 209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 288 (775)
++..|.++.+...+|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCcc
Confidence 7766666655555555 466677666633 55455556666666777766653 33344445555 56666666 33455
Q ss_pred ccCCccCCCCCCCCeeeccCcccc-----CCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCc
Q 043943 289 GVIPSSIGNSNNLSILYLYSNQLS-----GSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSI 363 (775)
Q Consensus 289 ~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 363 (775)
.....+|.++++|+.+.+.++.+. ......|.+|++|+.+.+. +.++.+...+|.+|++|+.+.+..+ ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 455566666667777666665543 2344556666677776666 3355555566666667777766443 44344
Q ss_pred hhhccCCCCCcEEEeccceecccCCccCcCCC-cccceeccccc
Q 043943 364 PQAIGNLVELVSLLLGFNYFRGPIPKNFKNLT-NLVRVRMNQNN 406 (775)
Q Consensus 364 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 406 (775)
..+|.++ +|+.+.+.+|.+.......|.+++ +++.+++..+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 4566666 677777666666555555555553 55666665544
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.4e-17 Score=163.96 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=122.0
Q ss_pred CCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEe
Q 043943 106 LFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLD 185 (775)
Q Consensus 106 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 185 (775)
+.+++.++++.+.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-------------------------~l~~l~~L~~L~ 69 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-------------------------GMQFFTNLKELH 69 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-------------------------TGGGCTTCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-------------------------HHhhCCCCCEEE
Confidence 34445555555555522 2 34555555555555555542 22 344455566666
Q ss_pred ccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCC
Q 043943 186 LSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSG 265 (775)
Q Consensus 186 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 265 (775)
+++|.+++..+ +..+++|++|++++|.+++.. . +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 70 L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~-~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 70 LSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN-G-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCT-T-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCCccCCChh--hccCCCCCEEECCCCccCCcC-c-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 66665554333 667777777777777777542 2 333 8999999999999864 358999999999999999986
Q ss_pred CCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCC
Q 043943 266 SIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGS 314 (775)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 314 (775)
. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4 688999999999999999976 6789999999999999999865
No 124
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=3.4e-15 Score=159.35 Aligned_cols=334 Identities=10% Similarity=-0.031 Sum_probs=150.6
Q ss_pred cccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccC
Q 043943 144 NGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTL 223 (775)
Q Consensus 144 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 223 (775)
+.+...+|.+|++|+.+.+.. .++.+...+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +..+...+|
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceee
Confidence 334445556666666665542 344444555555555555555433 33233334444444444433321 222333333
Q ss_pred CCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCe
Q 043943 224 GKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSI 303 (775)
Q Consensus 224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 303 (775)
.+ +..++....... ......+|.+|++|+.+.+.++. .......|.++.+|+.
T Consensus 137 ~~------------------------~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~ 189 (394)
T 4fs7_A 137 KG------------------------CDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKS 189 (394)
T ss_dssp TT------------------------CCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCB
T ss_pred ec------------------------ccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceE
Confidence 33 322222211111 11222345555555555554332 2233445555555555
Q ss_pred eeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEecccee
Q 043943 304 LYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYF 383 (775)
Q Consensus 304 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 383 (775)
+.+..+ ++......|.++..|+.+.+..+... +.........|+.+.+.... +......+..+..++.+.+..+..
T Consensus 190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC
T ss_pred EEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc
Confidence 555443 22233344555555555555443322 11222233455555554321 111223344444444444433321
Q ss_pred cccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCcc
Q 043943 384 RGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPE 463 (775)
Q Consensus 384 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 463 (775)
. .....|.. +..++.+...... .....|..+.+|+.+.+.++ ++.....+
T Consensus 266 ~-i~~~~F~~-------------------------~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 266 R-IGGSLFYN-------------------------CSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp E-ECSCTTTT-------------------------CTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred e-eecccccc-------------------------ccccceeccCcee---eccccccccccccccccccc-cceechhh
Confidence 1 11222333 3333333333221 12234455555555555433 33333445
Q ss_pred ccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCC
Q 043943 464 IGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVH 543 (775)
Q Consensus 464 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 543 (775)
|.+|.+|+.+++.++ ++.....+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++..+ +. .+..+|.++++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 666666666666533 44344555666666666666554 44344556666777777766544 22 2234566666665
Q ss_pred EE
Q 043943 544 YL 545 (775)
Q Consensus 544 ~L 545 (775)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=3.6e-15 Score=159.22 Aligned_cols=290 Identities=10% Similarity=0.005 Sum_probs=146.6
Q ss_pred cCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccC
Q 043943 74 LDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGN 153 (775)
Q Consensus 74 ~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 153 (775)
+...+|.++++|+.+.|..+ ++.+-..+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 34456777777777777643 55555667777777777777654 44344556777777777666554 33344455555
Q ss_pred CCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEE
Q 043943 154 LSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLN 233 (775)
Q Consensus 154 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 233 (775)
+..++..... ....+...+|.+|++|+.+.+..+. .......|.++.+|+.+++..+ ++.+...+|.++..|+.+.
T Consensus 139 ~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 139 CDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp CCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 5433322221 2223334556666666666665442 2234445666666666666543 4444455566666666665
Q ss_pred cccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccC
Q 043943 234 MSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSG 313 (775)
Q Consensus 234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 313 (775)
+..+... +.........|+.+.+... ++......+..+..|+.+.+..+... .....|..+..++.+......+.
T Consensus 215 ~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 215 FPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred cCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence 5544321 1222233445555555432 22223334555566666655544322 33444555555555554443321
Q ss_pred CCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEec
Q 043943 314 SIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLG 379 (775)
Q Consensus 314 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 379 (775)
...|..+.+|+.+.+.++ ++.+...+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+.
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 123445555555555432 33333444555555555555322 222223344444444444443
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.1e-18 Score=193.75 Aligned_cols=201 Identities=21% Similarity=0.181 Sum_probs=94.1
Q ss_pred CCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccc
Q 043943 320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVR 399 (775)
Q Consensus 320 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 399 (775)
..++.|+.|++++|++. .+|..++.+++|+.|++++|......+..+ ..+...+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 44556666666666665 445555666666666654432100001000 011123334444555555555
Q ss_pred ee-ccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCC
Q 043943 400 VR-MNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSN 478 (775)
Q Consensus 400 L~-l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n 478 (775)
|+ ++.|.+. .|..+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|+|++|
T Consensus 414 L~~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 414 VDPMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HCGGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred Ccchhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 55 3333221 22223333343332211 124555555555553 333 555555555555555
Q ss_pred CccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccC-CccccCcCCCCEEEccCCcCccC
Q 043943 479 HIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAI-PGSLGNLLKVHYLNLSNNEFSHK 555 (775)
Q Consensus 479 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~ 555 (775)
.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|.+++.. |..+..+++|+.|+|++|++++.
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 555 445555555555555555555553 33 4555555555555555555444 45555555555555555555443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=1.6e-18 Score=192.49 Aligned_cols=217 Identities=19% Similarity=0.178 Sum_probs=170.3
Q ss_pred CCCCCCCeeeccCccccCCCCccCCCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcE
Q 043943 296 GNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVS 375 (775)
Q Consensus 296 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 375 (775)
..+++|+.|++++|.++ .+|..++.+++|++|++++|......+.. +..+...+..|..+..+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhccc
Confidence 56889999999999998 67999999999999999776432111110 1122334567777888888888
Q ss_pred EE-eccceecccCCccCcCCCcccceeccccccccccchhhhccCCCCcEEeCCCccceeecCcCcCCCCCCCEEEcccC
Q 043943 376 LL-LGFNYFRGPIPKNFKNLTNLVRVRMNQNNLSGNISEAFVGTYPTLSFLDLSHNNFHGQISSDWGRFPQLGTLDFSVN 454 (775)
Q Consensus 376 L~-l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 454 (775)
|+ ++.|.+ ..|..+.+.+|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|
T Consensus 414 L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 414 VDPMRAAYL-----------DDLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HCGGGHHHH-----------HHHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred Ccchhhccc-----------chhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 87 555543 356677777776654221 258999999999987 455 899999999999999
Q ss_pred cccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccC-CcCccCCCCCCEEECCCCcccccCC
Q 043943 455 NITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSL-PPEIGTLTELELLDLSENRLSNAIP 533 (775)
Q Consensus 455 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~ls~n~l~~~~~ 533 (775)
.++ .+|..+..+++|++|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++.+|
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 999 788899999999999999999997 56 7999999999999999999876 8999999999999999999997755
Q ss_pred cc---ccCcCCCCEEEc
Q 043943 534 GS---LGNLLKVHYLNL 547 (775)
Q Consensus 534 ~~---~~~l~~L~~L~L 547 (775)
.. +..+++|+.|++
T Consensus 551 ~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTHHHHHCTTCSEEEC
T ss_pred HHHHHHHHCcccCccCC
Confidence 32 233667777654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3.5e-15 Score=141.57 Aligned_cols=132 Identities=23% Similarity=0.302 Sum_probs=101.9
Q ss_pred cEEeCCCccceeecCcCcCCCCCCCEEEcccCcccccCCc-cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCC
Q 043943 423 SFLDLSHNNFHGQISSDWGRFPQLGTLDFSVNNITGSIPP-EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNK 501 (775)
Q Consensus 423 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 501 (775)
+.++++++.+. .+|..+. +++++|++++|.+++..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777764 3444332 3788888888888766554 477888888888888888877788888888888888888
Q ss_pred CcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCc
Q 043943 502 NQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIP 557 (775)
Q Consensus 502 n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 557 (775)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777778888888888888888888888888888888888888888876554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.7e-15 Score=136.16 Aligned_cols=128 Identities=26% Similarity=0.310 Sum_probs=98.4
Q ss_pred CCCCEEEcCCCcCc-ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943 492 SSLNKLILNKNQLF-GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL 570 (775)
Q Consensus 492 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L 570 (775)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++ +|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEE
Confidence 56677777777776 56666667777777777777777755 5677788888888888888877777777777 88888
Q ss_pred ECcCCcCccc-CCccccCCCCCcEEeCCCCcCcccCC---ccccCCCCCCEEeCCC
Q 043943 571 DLSQNFLEGE-IPSQICNMESLVKLNLSYNQLSGFIP---NCFEDMHGLSSIDISY 622 (775)
Q Consensus 571 ~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~ls~ 622 (775)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888763 34778888889999999998888766 5788888888888763
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=2.1e-15 Score=140.02 Aligned_cols=133 Identities=21% Similarity=0.176 Sum_probs=82.9
Q ss_pred CCCCCEEECCCCCCc-ccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943 82 FPDLLFLNLFNNELF-GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160 (775)
Q Consensus 82 l~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 160 (775)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777776 55666667777777777777776644 556677777777777777765566656666666666
Q ss_pred EcccCcCcccC-CcccCCCCCCCEEeccCCcCcccCC---cccCCCCCccEEEcccccCc
Q 043943 161 SLYNNSLSGYI-PPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLFNNSLS 216 (775)
Q Consensus 161 ~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~ 216 (775)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666666542 2455556666666666665553333 24455555555555555544
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=4.2e-15 Score=138.00 Aligned_cols=133 Identities=24% Similarity=0.276 Sum_probs=95.3
Q ss_pred CCCCEEEcCCCcCc-ccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEE
Q 043943 492 SSLNKLILNKNQLF-GSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSEL 570 (775)
Q Consensus 492 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L 570 (775)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++ +|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEE
Confidence 55666666666665 45565566666677777777766654 5566777777777777777766666666676 78888
Q ss_pred ECcCCcCcccC-CccccCCCCCcEEeCCCCcCcccCC---ccccCCCCCCEEeCCCCcccc
Q 043943 571 DLSQNFLEGEI-PSQICNMESLVKLNLSYNQLSGFIP---NCFEDMHGLSSIDISYNRLQG 627 (775)
Q Consensus 571 ~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~ls~n~l~~ 627 (775)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888877532 2677888888888888888887665 577888888888888887653
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=139.36 Aligned_cols=131 Identities=28% Similarity=0.324 Sum_probs=86.1
Q ss_pred EEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCC
Q 043943 496 KLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQN 575 (775)
Q Consensus 496 ~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n 575 (775)
.+++++|.++ .+|..+ .++|++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|..+. +|+.|+|++|
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT-QLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC-CCCEEECCCC
Confidence 3444444444 333322 134555555555555 3345555566666666666666655555555555 6677777777
Q ss_pred cCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCCC
Q 043943 576 FLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVPF 631 (775)
Q Consensus 576 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 631 (775)
++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++.|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 77766677788888888888888888877777788888888899998888876653
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.2e-15 Score=136.70 Aligned_cols=128 Identities=20% Similarity=0.181 Sum_probs=81.3
Q ss_pred CCCCCEEECCCCCCc-ccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEE
Q 043943 82 FPDLLFLNLFNNELF-GIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLL 160 (775)
Q Consensus 82 l~~L~~L~ls~~~~~-~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 160 (775)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 56666667777777777777777644 556777777777777777765566666666667777
Q ss_pred EcccCcCccc-CCcccCCCCCCCEEeccCCcCcccCC---cccCCCCCccEEEcc
Q 043943 161 SLYNNSLSGY-IPPVIGNLISLSTLDLSLNQLIGSVP---FFLGNLTNLVTLHLF 211 (775)
Q Consensus 161 ~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~ 211 (775)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7666666653 23455556666666666665554333 244555555555543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.3e-14 Score=136.01 Aligned_cols=114 Identities=25% Similarity=0.321 Sum_probs=73.2
Q ss_pred CCCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEe
Q 043943 516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLN 595 (775)
Q Consensus 516 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 595 (775)
++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+. +|+.|++++|++++..+..|..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 3455555555555544444455555555555555555544444445555 666666666666655556667777778888
Q ss_pred CCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943 596 LSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630 (775)
Q Consensus 596 ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 630 (775)
+++|.+++..+..+..+++|+.|++++|++.|.+|
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88887777666667777888888888888877666
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.2e-14 Score=133.21 Aligned_cols=135 Identities=24% Similarity=0.211 Sum_probs=95.0
Q ss_pred CCCcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCc
Q 043943 45 NLCAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIP 124 (775)
Q Consensus 45 ~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p 124 (775)
..|.|.++.|... ++. .+| ....++|++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus 5 C~C~~~~l~~~~~-----------~l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 5 CSCSGTEIRCNSK-----------GLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp CEEETTEEECCSS-----------CCS-SCC---TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEeCCCEEEecCC-----------CCc-cCC---CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 4578988888532 221 122 1223678888888888876666667788888888888888876666
Q ss_pred hhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCccc
Q 043943 125 PEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGS 194 (775)
Q Consensus 125 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 194 (775)
..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 6677888888888888888766666667777777777777777766665666677777777777766543
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=5.7e-14 Score=133.09 Aligned_cols=124 Identities=24% Similarity=0.262 Sum_probs=59.4
Q ss_pred CEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccC
Q 043943 86 LFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNN 165 (775)
Q Consensus 86 ~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 165 (775)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35566666655 3343332 35555566555555 34455555555555555555555444444555555555555555
Q ss_pred cCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccc
Q 043943 166 SLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNN 213 (775)
Q Consensus 166 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 213 (775)
.+++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 444444444444444444444444444332223333333333333333
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.51 E-value=2.1e-12 Score=137.78 Aligned_cols=159 Identities=11% Similarity=0.114 Sum_probs=100.1
Q ss_pred cCccccCCCC-CCCEEECCCCCCcccCcccccCCCCCCEEeCcCCC---CCCCCchhccCCCCCCEEECCCccccccCcc
Q 043943 74 LDEFSFSSFP-DLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANK---LSGKIPPEIGQLSFLSELSLYSNCLNGSIPQ 149 (775)
Q Consensus 74 ~~~~~~~~l~-~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~---~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~ 149 (775)
+.+.+|.++. .|+.+.+..+ ++.+-..+|.+|.+|+.+.+..+. ++.+...+|..+.+|+.+.+..+ ++.+...
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3445676664 4788887654 555666778888888888877653 44445566777777777777654 4435556
Q ss_pred cccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCC
Q 043943 150 SLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCL 229 (775)
Q Consensus 150 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 229 (775)
.|.++.+|+.+.+.. .+..+....|..+.+|+.+.+..+ ++.....+|.. .+|+.+.+..+ +..+...+|.++..+
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l 207 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFAL 207 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTC
T ss_pred hhhhhcccccccccc-eeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhcccc
Confidence 677777777777753 344455666777777777777654 33333444433 56777776543 233455667777777
Q ss_pred CEEEccccc
Q 043943 230 SNLNMSMNH 238 (775)
Q Consensus 230 ~~L~l~~n~ 238 (775)
.........
T Consensus 208 ~~~~~~~~~ 216 (394)
T 4gt6_A 208 STITSDSES 216 (394)
T ss_dssp CEEEECCSS
T ss_pred ceecccccc
Confidence 766655443
No 138
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.49 E-value=3.9e-12 Score=135.61 Aligned_cols=110 Identities=13% Similarity=0.197 Sum_probs=54.4
Q ss_pred CcCcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCC
Q 043943 437 SSDWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLT 516 (775)
Q Consensus 437 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 516 (775)
...|.++++|+.+.+. +.++.....+|.+|.+|+.++|.++ ++.....+|.+|.+|+.+.|..+ ++.....+|.+|+
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 3445555555555554 2333333445666666666666543 44344455666666666666543 4434445666666
Q ss_pred CCCEEECCCCcccccCCccccCcCCCCEEEccCCcC
Q 043943 517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEF 552 (775)
Q Consensus 517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 552 (775)
+|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 66666666654331 2455566666666665543
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=8.6e-14 Score=130.04 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=59.1
Q ss_pred CCCEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCc--cccCCCCCcEE
Q 043943 517 ELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPS--QICNMESLVKL 594 (775)
Q Consensus 517 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L 594 (775)
+|++|++++|.+++. ..+..+++|++|+|++|.+++..+..+..++ +|+.|++++|.++ .+|. .+..+++|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC-CCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 444444444444433 3344455555555555555543333334444 5666666666554 3443 56667777777
Q ss_pred eCCCCcCcccCCc----cccCCCCCCEEeCCCCcccc
Q 043943 595 NLSYNQLSGFIPN----CFEDMHGLSSIDISYNRLQG 627 (775)
Q Consensus 595 ~ls~n~l~~~~p~----~l~~l~~L~~l~ls~n~l~~ 627 (775)
++++|.++.. |. .+..+++|+.||+++|....
T Consensus 119 ~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 119 CILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 7777777643 33 36677777777777776543
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.1e-13 Score=129.24 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=91.5
Q ss_pred cccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCCC
Q 043943 463 EIGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLKV 542 (775)
Q Consensus 463 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 542 (775)
.+..+.+|++|++++|.+... +......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 355666777777777776633 43222233777777777777654 466777777777777777776655555777777
Q ss_pred CEEEccCCcCccCCch--hHHhhhccccEEECcCCcCcccCCc----cccCCCCCcEEeCCCCcCcc
Q 043943 543 HYLNLSNNEFSHKIPT--QFEKLQLQLSELDLSQNFLEGEIPS----QICNMESLVKLNLSYNQLSG 603 (775)
Q Consensus 543 ~~L~Ls~n~l~~~~~~--~~~~l~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~ls~n~l~~ 603 (775)
++|+|++|.++ .+|. .+..++ +|+.|++++|.++ .+|. .+..+++|+.||+++|....
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLK-SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCT-TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCC-CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 77777777774 3444 566666 7888888888777 4455 37778888888888887654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=9.3e-16 Score=146.60 Aligned_cols=151 Identities=20% Similarity=0.236 Sum_probs=109.3
Q ss_pred CCCcEEEccCCCccCcCCh------hhhcCCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCCccccCcCC
Q 043943 468 SKLQVLNLSSNHIGGKIPM------ELGRLSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIPGSLGNLLK 541 (775)
Q Consensus 468 ~~L~~L~Ls~n~l~~~~~~------~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 541 (775)
..++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444444444444444443 67777777778887777775 55 6777788888888888877 45666667788
Q ss_pred CCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCC-ccccCCCCCcEEeCCCCcCcccCCcc----------cc
Q 043943 542 VHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIP-SQICNMESLVKLNLSYNQLSGFIPNC----------FE 610 (775)
Q Consensus 542 L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~----------l~ 610 (775)
|++|++++|++++ +| .+..++ +|+.|++++|++++..+ ..+..+++|+.|++++|.+.+.+|.. +.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 8888888888876 34 677777 89999999998885332 47888899999999999988776653 77
Q ss_pred CCCCCCEEeCCCCccc
Q 043943 611 DMHGLSSIDISYNRLQ 626 (775)
Q Consensus 611 ~l~~L~~l~ls~n~l~ 626 (775)
.+++|+.|| +|+++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 788888887 55554
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.4e-15 Score=145.43 Aligned_cols=132 Identities=26% Similarity=0.313 Sum_probs=62.7
Q ss_pred ccCCCCcEEeCCCccceeecCc------CcCCCCCCCEEEcccCcccccCCccccCCCCCcEEEccCCCccCcCChhhhc
Q 043943 417 GTYPTLSFLDLSHNNFHGQISS------DWGRFPQLGTLDFSVNNITGSIPPEIGNSSKLQVLNLSSNHIGGKIPMELGR 490 (775)
Q Consensus 417 ~~~~~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 490 (775)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445666667777666665554 44445555555555555543 33 4444555555555555544 23434444
Q ss_pred CCCCCEEEcCCCcCcccCCcCccCCCCCCEEECCCCcccccCC-ccccCcCCCCEEEccCCcCc
Q 043943 491 LSSLNKLILNKNQLFGSLPPEIGTLTELELLDLSENRLSNAIP-GSLGNLLKVHYLNLSNNEFS 553 (775)
Q Consensus 491 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~ 553 (775)
+++|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 4445555555554443 12 23444444444444444443211 23334444444444444443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=9.9e-13 Score=121.72 Aligned_cols=108 Identities=25% Similarity=0.358 Sum_probs=68.8
Q ss_pred CEEECCCCcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCC
Q 043943 519 ELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSY 598 (775)
Q Consensus 519 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 598 (775)
+.+++++|.++. +|..+ .++|++|+|++|++++..|..+..+. +|+.|+|++|++++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 445555555543 23322 24555555555555555555555555 666666666666655556667777777777777
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943 599 NQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630 (775)
Q Consensus 599 n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 630 (775)
|++++..+..|..+++|+.|++++|++.+.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77777766677777788888888888777665
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=3.2e-12 Score=118.67 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=54.3
Q ss_pred CCCCEEEccCCcCccCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEe
Q 043943 540 LKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSID 619 (775)
Q Consensus 540 ~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ 619 (775)
++|+.|+|++|++++..|..+..+. +|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 4445555555555544444444444 555555555555544444556667777777777777766555677777777777
Q ss_pred CCCCcccccCC
Q 043943 620 ISYNRLQGPVP 630 (775)
Q Consensus 620 ls~n~l~~~~p 630 (775)
+++|++.+.++
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 77777766544
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=7.6e-12 Score=115.73 Aligned_cols=85 Identities=27% Similarity=0.232 Sum_probs=37.8
Q ss_pred CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL 186 (775)
Q Consensus 107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 186 (775)
++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 34444444444444433444444444444444444444333333444444444444444444443334444444444444
Q ss_pred cCCcC
Q 043943 187 SLNQL 191 (775)
Q Consensus 187 ~~n~~ 191 (775)
++|.+
T Consensus 110 ~~N~~ 114 (170)
T 3g39_A 110 LNNPW 114 (170)
T ss_dssp CSSCB
T ss_pred CCCCC
Confidence 44444
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.2e-11 Score=114.74 Aligned_cols=86 Identities=26% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEec
Q 043943 107 FKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDL 186 (775)
Q Consensus 107 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 186 (775)
++|++|+|++|.+.+..|..|..+++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44555555555555444444555555555555555554333333444455555555554444444444444555555555
Q ss_pred cCCcCc
Q 043943 187 SLNQLI 192 (775)
Q Consensus 187 ~~n~~~ 192 (775)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555443
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.24 E-value=7.9e-10 Score=117.19 Aligned_cols=300 Identities=10% Similarity=0.019 Sum_probs=124.7
Q ss_pred CCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCCccccccCcccccCCCCCCE
Q 043943 80 SSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSL 159 (775)
Q Consensus 80 ~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 159 (775)
....+|+.+.+.. .++.+-..+|.+|.+|+.++|..+ ++.+...+|.++ +|+.+.+..+ ++.+...+|..+ +|+.
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSE
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccc
Confidence 3344566665543 244344455666666666666543 443444455555 4555555433 332333334332 4555
Q ss_pred EEcccCcCcccCCcccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcccccCccccCccCCCCCCCCEEEcccccc
Q 043943 160 LSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHL 239 (775)
Q Consensus 160 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 239 (775)
+.+..+ +..+....|.++ +|+.+.+..+ ++......|..+.+++.+.+..+.........+. . +.
T Consensus 118 i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~----------~~- 182 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-Y----------NK- 182 (379)
T ss_dssp EECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-E----------ET-
T ss_pred ccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-c----------cc-
Confidence 555432 222333333333 3444433322 2222333444455555544443221100000000 0 00
Q ss_pred cccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCcccccCCccCCCCCCCCeeeccCccccCCCCccC
Q 043943 240 SGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINRLNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEI 319 (775)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 319 (775)
.......+.....+..+.+..... ......+..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ ++.+...+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF 259 (379)
T 4h09_A 183 NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL 259 (379)
T ss_dssp TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc
Confidence 000001122222333333322111 122223334444444444332 22233334444445555444333 222333344
Q ss_pred CCCCCCCeeeCcCCcCcCccCCcCCCCCcCcEEEccCCcCCCCchhhccCCCCCcEEEeccceecccCCccCcCCCcccc
Q 043943 320 GNLKCLFDLELSMNNLTGVIPSSIGNLRNLRLLYLYRNELSGSIPQAIGNLVELVSLLLGFNYFRGPIPKNFKNLTNLVR 399 (775)
Q Consensus 320 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 399 (775)
.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++......|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~ 337 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALST 337 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCC
T ss_pred ceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCE
Confidence 45555555554332 22233344555555555555555444333445555555555555433 33233445666666666
Q ss_pred eeccc
Q 043943 400 VRMNQ 404 (775)
Q Consensus 400 L~l~~ 404 (775)
+.+..
T Consensus 338 i~ip~ 342 (379)
T 4h09_A 338 ISYPK 342 (379)
T ss_dssp CCCCT
T ss_pred EEECC
Confidence 66643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=2.6e-13 Score=142.37 Aligned_cols=136 Identities=24% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCCcEEEccCCCccCcCChhh-hcCCCCCEEEcCCCcCcccCCcCc-----cCCCCCCEEECCCCccccc----CCcccc
Q 043943 468 SKLQVLNLSSNHIGGKIPMEL-GRLSSLNKLILNKNQLFGSLPPEI-----GTLTELELLDLSENRLSNA----IPGSLG 537 (775)
Q Consensus 468 ~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~ls~n~l~~~----~~~~~~ 537 (775)
++|++|+|++|.+.......+ ..+++|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554433222111 223345555555555443222221 1234455555555555431 122234
Q ss_pred CcCCCCEEEccCCcCccCC----chhHHhhhccccEEECcCCcCccc----CCccccCCCCCcEEeCCCCcCccc
Q 043943 538 NLLKVHYLNLSNNEFSHKI----PTQFEKLQLQLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLSGF 604 (775)
Q Consensus 538 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~ 604 (775)
.+++|++|+|++|.+++.. +..+.... +|+.|+|++|.++.. ++..+...++|++|+|++|.++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 4455555555555554322 11222222 455555555544432 222333445555555555555544
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.23 E-value=1.4e-09 Score=115.34 Aligned_cols=259 Identities=10% Similarity=0.030 Sum_probs=138.3
Q ss_pred CEEEEEcCCCCCccccCccccCCCCCCCEEECCCCCCcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEEC
Q 043943 59 RVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFNNELFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSL 138 (775)
Q Consensus 59 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L 138 (775)
+++.+.+.. ++ ..+.+.+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ +......+|..+ +|+.+.+
T Consensus 47 ~i~~v~ip~-~v-t~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNS-GI-TSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GCSEEEECT-TE-EEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred CCEEEEeCC-Cc-cChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence 345555542 11 2455688999999999999754 666667789887 7888888755 444555567665 8999999
Q ss_pred CCccccccCcccccCCCCCCEEEcccCcCcccCCcccCCCCCCCEEeccCCcCcccC------------CcccCCCCCcc
Q 043943 139 YSNCLNGSIPQSLGNLSKQSLLSLYNNSLSGYIPPVIGNLISLSTLDLSLNQLIGSV------------PFFLGNLTNLV 206 (775)
Q Consensus 139 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~------------~~~~~~l~~L~ 206 (775)
..+ +.......|.++ +|+.+.+.. .++.+....+..+.+++.+.+......... ...+..+..+.
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCc-cccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 876 333445566665 577666553 456666778888999998887765432111 11222333344
Q ss_pred EEEcccccCccccCccCCCCCCCCEEEcccccccccCCccccCCCCCcEEEcccccCCCCCCccccCCCCCCEEEcccCc
Q 043943 207 TLHLFNNSLSGFIPSTLGKLKCLSNLNMSMNHLSGAIPSSIGNVRNLRSLFLYSNELSGSIPKEIGNLRSLSNLDLSINR 286 (775)
Q Consensus 207 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 286 (775)
.+.+.... .......+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.....+|.++.+|+.+.+..+
T Consensus 198 ~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 198 EFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp EEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred ccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 44333221 1223334444555555554332 22233334444455555544333 22233334444444554444322
Q ss_pred ccccCCccCCCCCCCCeeeccCccccCCCCccCCCCCCCCeeeC
Q 043943 287 LNGVIPSSIGNSNNLSILYLYSNQLSGSIPKEIGNLKCLFDLEL 330 (775)
Q Consensus 287 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 330 (775)
+.......|.++.+|+.+.+.++.++.+...+|.++.+|+.+.+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 22233334444444444444444433333334444444444444
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=9.9e-13 Score=137.97 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=120.4
Q ss_pred CCCCcEEEccCCCccCcCChhhh-----cCCCCCEEEcCCCcCcccCCcCc-cCCCCCCEEECCCCcccccCCccc----
Q 043943 467 SSKLQVLNLSSNHIGGKIPMELG-----RLSSLNKLILNKNQLFGSLPPEI-GTLTELELLDLSENRLSNAIPGSL---- 536 (775)
Q Consensus 467 ~~~L~~L~Ls~n~l~~~~~~~l~-----~l~~L~~L~L~~n~~~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~---- 536 (775)
++.|++|+|++|.++......+. ..++|++|+|++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35788888888888754443333 23799999999999875433332 346789999999999976544333
Q ss_pred -cCcCCCCEEEccCCcCccCCch----hHHhhhccccEEECcCCcCccc----CCccccCCCCCcEEeCCCCcCccc---
Q 043943 537 -GNLLKVHYLNLSNNEFSHKIPT----QFEKLQLQLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLSGF--- 604 (775)
Q Consensus 537 -~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~--- 604 (775)
...++|++|+|++|.++..... .+...+ +|++|+|++|.+++. ++..+...++|+.|+|++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3468899999999999764333 335555 899999999999753 356677888999999999999864
Q ss_pred -CCccccCCCCCCEEeCCCCcccc
Q 043943 605 -IPNCFEDMHGLSSIDISYNRLQG 627 (775)
Q Consensus 605 -~p~~l~~l~~L~~l~ls~n~l~~ 627 (775)
++..+...++|++|++++|++..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 34455667899999999998864
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.1e-10 Score=122.10 Aligned_cols=104 Identities=25% Similarity=0.227 Sum_probs=70.3
Q ss_pred EEEcCCC-cCcccCCcCccCCCCCCEEECCC-CcccccCCccccCcCCCCEEEccCCcCccCCchhHHhhhccccEEECc
Q 043943 496 KLILNKN-QLFGSLPPEIGTLTELELLDLSE-NRLSNAIPGSLGNLLKVHYLNLSNNEFSHKIPTQFEKLQLQLSELDLS 573 (775)
Q Consensus 496 ~L~L~~n-~~~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~~L~~L~Ls 573 (775)
.++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|+|++..|..|..+. +|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCC
Confidence 4566666 666 4666 77777777777775 777776666777777777777777777776666666666 67777777
Q ss_pred CCcCcccCCccccCCCCCcEEeCCCCcCcc
Q 043943 574 QNFLEGEIPSQICNMESLVKLNLSYNQLSG 603 (775)
Q Consensus 574 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 603 (775)
+|++++..+..|..++ |+.|+|++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7777655555555544 6666666666653
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=6.5e-10 Score=116.30 Aligned_cols=108 Identities=25% Similarity=0.244 Sum_probs=63.4
Q ss_pred CcccceeeCCCCCEEEEEcCCCCCccccCccccCCCCCCCEEECCC-CCCcccCcccccCCCCCCEEeCcCCCCCCCCch
Q 043943 47 CAWSGIYCNHDERVVGINLTTTSLNGTLDEFSFSSFPDLLFLNLFN-NELFGIIPPQISQLFKLQYLDLSANKLSGKIPP 125 (775)
Q Consensus 47 c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ls~-~~~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~ 125 (775)
|.|..+.|.... .+. .+| . +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++..|.
T Consensus 8 C~~~~v~~~~~n----------~l~-~ip-~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 8 HGSSGLRCTRDG----------ALD-SLH-H-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp SSSSCEECCSSC----------CCT-TTT-T-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred ccCCEEEcCCCC----------CCC-ccC-C-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence 778777774321 232 245 3 66666667777764 666666556666666666666666666666666
Q ss_pred hccCCCCCCEEECCCccccccCcccccCCCCCCEEEcccCcCc
Q 043943 126 EIGQLSFLSELSLYSNCLNGSIPQSLGNLSKQSLLSLYNNSLS 168 (775)
Q Consensus 126 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 168 (775)
.|.++++|++|+|++|++++..+..|..++ |+.|++.+|.+.
T Consensus 75 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666666666666666666644333333333 555555555443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=1e-09 Score=113.87 Aligned_cols=40 Identities=13% Similarity=0.318 Sum_probs=19.8
Q ss_pred CCCCcEEEcccccCCCC----CCccccCCCCCCEEEcccCcccc
Q 043943 250 VRNLRSLFLYSNELSGS----IPKEIGNLRSLSNLDLSINRLNG 289 (775)
Q Consensus 250 l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~ 289 (775)
+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.++.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 44555555555555432 12222344556666666665543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=1.6e-09 Score=112.43 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=79.5
Q ss_pred ccCCCCCcEEEccCCCccCcCChhhhcCCCCCEEEcCCCcCcccCCcCcc--CCCCCCEEECCC--Cccccc-----CCc
Q 043943 464 IGNSSKLQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQLFGSLPPEIG--TLTELELLDLSE--NRLSNA-----IPG 534 (775)
Q Consensus 464 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~ls~--n~l~~~-----~~~ 534 (775)
+..+++|+.|+|++|.-. .++. + .+++|++|+|..|.+.......+. .+++|+.|+|+. |...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 444555555555554211 1111 2 245566666655554332222222 455666665532 111110 001
Q ss_pred cc--cCcCCCCEEEccCCcCccCCchhHHh---hhccccEEECcCCcCccc----CCccccCCCCCcEEeCCCCcCcccC
Q 043943 535 SL--GNLLKVHYLNLSNNEFSHKIPTQFEK---LQLQLSELDLSQNFLEGE----IPSQICNMESLVKLNLSYNQLSGFI 605 (775)
Q Consensus 535 ~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~ 605 (775)
.+ ..+++|+.|+|.+|.+.+..+..+.. ++ +|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~-~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILP-QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGG-GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCC-CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 11 24677778888777776544444442 33 778888888777653 3333445678888888888776543
Q ss_pred CccccC-CCCCCEEeCCCCc
Q 043943 606 PNCFED-MHGLSSIDISYNR 624 (775)
Q Consensus 606 p~~l~~-l~~L~~l~ls~n~ 624 (775)
-..+.. + ...++++.++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 2 3456777665
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.57 E-value=2.1e-09 Score=105.32 Aligned_cols=21 Identities=19% Similarity=0.006 Sum_probs=14.2
Q ss_pred CCCcccceeeCCCC-CEEEEEc
Q 043943 45 NLCAWSGIYCNHDE-RVVGINL 65 (775)
Q Consensus 45 ~~c~w~gv~c~~~~-~v~~l~l 65 (775)
..|.|.|+.|+..+ +|..+..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEE
T ss_pred HHHhcCcEEECCCCCEEEEEEe
Confidence 35899999998643 5544443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=1.3e-07 Score=88.33 Aligned_cols=120 Identities=16% Similarity=0.125 Sum_probs=61.4
Q ss_pred hhhhcCCCCCEEEcCCC-cCccc----CCcCccCCCCCCEEECCCCcccccC----CccccCcCCCCEEEccCCcCccCC
Q 043943 486 MELGRLSSLNKLILNKN-QLFGS----LPPEIGTLTELELLDLSENRLSNAI----PGSLGNLLKVHYLNLSNNEFSHKI 556 (775)
Q Consensus 486 ~~l~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~ 556 (775)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.... ...+...++|++|+|++|.+....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455667777777776 65432 1223344455555555555554321 112223344444444444443321
Q ss_pred chhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeC--CCCcCccc----CCccccCCCCCCEEeCCCCccc
Q 043943 557 PTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNL--SYNQLSGF----IPNCFEDMHGLSSIDISYNRLQ 626 (775)
Q Consensus 557 ~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l--s~n~l~~~----~p~~l~~l~~L~~l~ls~n~l~ 626 (775)
... +...+...++|++|+| ++|.+... +...+...++|+.|++++|.+.
T Consensus 110 ~~~---------------------l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILA---------------------LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHH---------------------HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHH---------------------HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 111 2344455566777777 66666554 2334455567777777777653
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=9.6e-08 Score=89.21 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=47.1
Q ss_pred ccCCCCCCCEEECCCC-CCccc----CcccccCCCCCCEEeCcCCCCCCC----CchhccCCCCCCEEECCCcccccc--
Q 043943 78 SFSSFPDLLFLNLFNN-ELFGI----IPPQISQLFKLQYLDLSANKLSGK----IPPEIGQLSFLSELSLYSNCLNGS-- 146 (775)
Q Consensus 78 ~~~~l~~L~~L~ls~~-~~~~~----~~~~~~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~-- 146 (775)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 65432 333445556666666666665432 222234445566666666655432
Q ss_pred --CcccccCCCCCCEEEc--ccCcCc
Q 043943 147 --IPQSLGNLSKQSLLSL--YNNSLS 168 (775)
Q Consensus 147 --~~~~~~~l~~L~~L~l--~~n~~~ 168 (775)
+...+...++|++|++ ++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2233444445555555 444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=2.5e-07 Score=90.65 Aligned_cols=79 Identities=29% Similarity=0.344 Sum_probs=44.6
Q ss_pred CcCCCCEEEccCCcCcc--CCchhHHhhhccccEEECcCCcCcccCCccccCCC--CCcEEeCCCCcCcccCCc------
Q 043943 538 NLLKVHYLNLSNNEFSH--KIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNME--SLVKLNLSYNQLSGFIPN------ 607 (775)
Q Consensus 538 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~ls~n~l~~~~p~------ 607 (775)
++++|+.|+|++|++++ .+|..+..++ +|+.|+|++|++++. ..+..+. .|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45556666666666655 3334445555 666666666666543 2223333 677777777777665442
Q ss_pred -cccCCCCCCEEe
Q 043943 608 -CFEDMHGLSSID 619 (775)
Q Consensus 608 -~l~~l~~L~~l~ 619 (775)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 345566666665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=3.2e-06 Score=76.46 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=55.2
Q ss_pred CCCCEEECCCCcccccCCccccCcCCCCEEEccCCc-CccCCchhHHhh---hccccEEECcCCc-CcccCCccccCCCC
Q 043943 516 TELELLDLSENRLSNAIPGSLGNLLKVHYLNLSNNE-FSHKIPTQFEKL---QLQLSELDLSQNF-LEGEIPSQICNMES 590 (775)
Q Consensus 516 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l---~~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 590 (775)
..|+.||+++|.++...-..+..+++|++|+|++|. +++..-..+..+ .++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666777666665544556677777777777774 665444445442 1268888888874 66554555667788
Q ss_pred CcEEeCCCCc
Q 043943 591 LVKLNLSYNQ 600 (775)
Q Consensus 591 L~~L~ls~n~ 600 (775)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887775
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=2.7e-06 Score=77.00 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=35.0
Q ss_pred CcEEEccCCCccCcCChhhhcCCCCCEEEcCCCc-CcccCCcCccCC----CCCCEEECCCCc-ccccCCccccCcCCCC
Q 043943 470 LQVLNLSSNHIGGKIPMELGRLSSLNKLILNKNQ-LFGSLPPEIGTL----TELELLDLSENR-LSNAIPGSLGNLLKVH 543 (775)
Q Consensus 470 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~~~~~~~l~~L~ 543 (775)
|+.||+++|.++...-..+..+++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|+
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~ 142 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK 142 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence 4444444444333333333444444444444442 332222222222 245555555543 4433223344556666
Q ss_pred EEEccCCc
Q 043943 544 YLNLSNNE 551 (775)
Q Consensus 544 ~L~Ls~n~ 551 (775)
+|+|+++.
T Consensus 143 ~L~L~~c~ 150 (176)
T 3e4g_A 143 YLFLSDLP 150 (176)
T ss_dssp EEEEESCT
T ss_pred EEECCCCC
Confidence 66666653
No 161
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=97.73 E-value=5.9e-06 Score=83.60 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=30.2
Q ss_pred HHHHHHHhcccccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943 730 YDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ 773 (775)
Q Consensus 730 ~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~ 773 (775)
+.|+..++-.|.+ +||+|+||+||||++. +|+.||||+++..
T Consensus 20 ~~ei~~~~~~~~~--~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~ 67 (308)
T 4gt4_A 20 LKEISLSAVRFME--ELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK 67 (308)
T ss_dssp CCBCCGGGEEEEE--EEEECSSCEEEEEEEC-------CEEEEEEECCC-
T ss_pred cccCCHHHCeEee--EeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcc
Confidence 3344444445654 4999999999999983 4678999999653
No 162
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=97.69 E-value=3.1e-05 Score=78.89 Aligned_cols=46 Identities=30% Similarity=0.568 Sum_probs=42.6
Q ss_pred ccccHHHHHHHhcccccc------eEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 726 GKITYDQIIRATNDFDEE------YCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 726 ~~~~~~~l~~aT~~f~~~------~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
..|++.++.++|++|++. +.||+|+||.||+|.. +|+.||||++..
T Consensus 13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~ 64 (307)
T 2nru_A 13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAA 64 (307)
T ss_dssp EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECC
T ss_pred CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEec
Confidence 569999999999999998 8999999999999998 789999999864
No 163
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=97.49 E-value=4.5e-05 Score=78.42 Aligned_cols=48 Identities=25% Similarity=0.567 Sum_probs=44.7
Q ss_pred cccccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 725 EGKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 725 ~~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
.+.|+++++..++++|...++||+|+||.||+|...+|+.||||++..
T Consensus 17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~ 64 (326)
T 3uim_A 17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKE 64 (326)
T ss_dssp CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC
T ss_pred cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEecc
Confidence 467899999999999999999999999999999998999999999864
No 164
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=97.31 E-value=0.0001 Score=75.24 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=28.2
Q ss_pred ccccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ 773 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~ 773 (775)
+|.-.++||+|+||+||+|++. +|+.||||+++..
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~ 82 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA 82 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC
Confidence 3555677999999999999974 4789999999753
No 165
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.29 E-value=0.00016 Score=73.99 Aligned_cols=47 Identities=30% Similarity=0.355 Sum_probs=39.7
Q ss_pred ccccHHHHHHHhcc----------cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 726 GKITYDQIIRATND----------FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 726 ~~~~~~~l~~aT~~----------f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
..++++++++||+. |.....||+|+||.||+|... +|+.||||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~ 80 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDL 80 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEec
Confidence 46899999999976 555678999999999999986 799999999864
No 166
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=97.22 E-value=6.7e-05 Score=76.91 Aligned_cols=47 Identities=30% Similarity=0.576 Sum_probs=40.6
Q ss_pred cccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
++++.++..++++|....+||+|+||.||+|+..+|+.||||++...
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~ 74 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPE 74 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSC
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEeccc
Confidence 45667778899999999999999999999999988999999998653
No 167
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=97.06 E-value=9.3e-05 Score=75.44 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=31.2
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|...++||+|+||+||+|... +|+.||||++..
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~ 92 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMS 92 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESS
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecc
Confidence 56888899999999999999986 799999999754
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.01 E-value=0.00047 Score=63.53 Aligned_cols=116 Identities=14% Similarity=0.190 Sum_probs=57.4
Q ss_pred hhcCCCCCEEEcCCC-cCccc----CCcCccCCCCCCEEECCCCcccccCC----ccccCcCCCCEEEccCCcCccCCch
Q 043943 488 LGRLSSLNKLILNKN-QLFGS----LPPEIGTLTELELLDLSENRLSNAIP----GSLGNLLKVHYLNLSNNEFSHKIPT 558 (775)
Q Consensus 488 l~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~ 558 (775)
+.+-+.|++|+|++| ++... +...+..-+.|+.|+|++|.+.+... ..+..-+.|++|+|++|.|....-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566777777764 55321 22234445556666666666553221 1222334455555555554432222
Q ss_pred hHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCc---Cccc----CCccccCCCCCCEEeCCCCc
Q 043943 559 QFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQ---LSGF----IPNCFEDMHGLSSIDISYNR 624 (775)
Q Consensus 559 ~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~---l~~~----~p~~l~~l~~L~~l~ls~n~ 624 (775)
. +-+.+..-+.|++|+|++|. +... +...+..-+.|+.|+++.|.
T Consensus 117 a---------------------la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 R---------------------LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp H---------------------HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred H---------------------HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 22334445567777776542 2221 33445555677777776553
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.88 E-value=0.0005 Score=63.35 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=28.1
Q ss_pred hcCCCCCEEEcCCCcCcccCC----cCccCCCCCCEEECCCCccccc----CCccccCcCCCCEEEccCC
Q 043943 489 GRLSSLNKLILNKNQLFGSLP----PEIGTLTELELLDLSENRLSNA----IPGSLGNLLKVHYLNLSNN 550 (775)
Q Consensus 489 ~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n 550 (775)
..-+.|+.|+|++|++..... ..+..-+.|++|+|++|.|.+. +..++..-+.|++|+|++|
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 334455555555555542211 2223345555555555555432 1122334445566666543
No 170
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=96.80 E-value=0.00056 Score=68.72 Aligned_cols=31 Identities=32% Similarity=0.426 Sum_probs=25.0
Q ss_pred cccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
|.-.++||+|+||+||||++.+ .||||+++.
T Consensus 38 l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~ 68 (307)
T 3omv_A 38 VMLSTRIGSGSFGTVYKGKWHG--DVAVKILKV 68 (307)
T ss_dssp CCEEEECCCCSSSEEEEEESSS--EEEEEECCC
T ss_pred eEEeeEEeeCCCcEEEEEEECC--cEEEEEEEe
Confidence 3345679999999999999843 599999863
No 171
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.70 E-value=0.0029 Score=54.39 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=41.7
Q ss_pred EEECcCCcCc-ccCCccccCCCCCcEEeCCCCcCcccCCccccCCCCCCEEeCCCCcccccCC
Q 043943 569 ELDLSQNFLE-GEIPSQICNMESLVKLNLSYNQLSGFIPNCFEDMHGLSSIDISYNRLQGPVP 630 (775)
Q Consensus 569 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 630 (775)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|++.+.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4556666654 24454332 357788888888887777778888888888888888877655
No 172
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=96.65 E-value=0.00076 Score=68.58 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=30.2
Q ss_pred hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
.+.|....+||+|+||+||+|+- .+|+.||||+++.
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~ 93 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL 93 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECH
Confidence 34566677899999999999996 4799999999864
No 173
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=96.60 E-value=0.0012 Score=67.29 Aligned_cols=32 Identities=38% Similarity=0.568 Sum_probs=27.7
Q ss_pred cccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
|..-..||+|+||+||+|.-. +|+.||||++.
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~ 108 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMD 108 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEe
Confidence 555577999999999999974 79999999984
No 174
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=96.53 E-value=0.00076 Score=71.91 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=38.5
Q ss_pred ccHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
+.++++..++++|...++||+|+||+||+|+.. +|+.||||++.
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~ 108 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILN 108 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEE
Confidence 456777778899999999999999999999986 47899999985
No 175
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=96.52 E-value=0.0014 Score=65.33 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.8
Q ss_pred eEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.+||+||||+||+|... .|+.||||++.
T Consensus 32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~ 60 (290)
T 3fpq_A 32 IEIGRGSFKTVYKGLDTETTVEVAWCELQ 60 (290)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred eEEecCcCcEEEEEEECCCCeEEEEEEEc
Confidence 46999999999999874 68999999985
No 176
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=96.47 E-value=0.001 Score=70.60 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=31.9
Q ss_pred HHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 735 RATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 735 ~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
..++.|...++||+||||+||+|.. .+|+.||||++.
T Consensus 75 ~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~ 112 (413)
T 3dzo_A 75 ERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPY 112 (413)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEC
T ss_pred CCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEe
Confidence 3456677788999999999999994 579999999987
No 177
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=96.43 E-value=0.0015 Score=66.83 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=23.4
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
++|.-.+.||+||||+||+|.- .+|+.||||++..
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~ 59 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINI 59 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEEC
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEeh
Confidence 3466667899999999999986 4799999999853
No 178
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.0015 Score=69.06 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=39.1
Q ss_pred cccHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 727 KITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 727 ~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.+.++++...+++|...++||+|+||+||++... +|+.||||+++
T Consensus 50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~ 95 (412)
T 2vd5_A 50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMN 95 (412)
T ss_dssp HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEe
Confidence 3556777777899999999999999999999984 79999999985
No 179
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=96.36 E-value=0.0022 Score=65.53 Aligned_cols=47 Identities=28% Similarity=0.447 Sum_probs=26.9
Q ss_pred cccHHHHHHHhccccc---------ceEeecCCCCcEEEEEeC----CCCEEEEEEccCC
Q 043943 727 KITYDQIIRATNDFDE---------EYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNSQ 773 (775)
Q Consensus 727 ~~~~~~l~~aT~~f~~---------~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~~ 773 (775)
..++.+...++..|.. .++||+|+||.||+|... .+..||||++...
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~ 88 (325)
T 3kul_A 29 PHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG 88 (325)
T ss_dssp --------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT
T ss_pred cccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC
Confidence 3556677777766654 488999999999999984 3456999998753
No 180
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=67.26 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=29.0
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
+.|..-.+||+|+||.||+|.-. +|+.||||++.
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~ 185 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMD 185 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEe
Confidence 34666688999999999999974 79999999985
No 181
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=96.33 E-value=0.002 Score=66.18 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=28.4
Q ss_pred cccccceEeecCCCCcEEEEEeCC------CCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~~ 773 (775)
++|.-.+.||+|+||+||+|.+.+ ++.||||++...
T Consensus 64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~ 105 (353)
T 4ase_A 64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG 105 (353)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTT
T ss_pred HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccc
Confidence 345556789999999999998742 358999999754
No 182
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=96.32 E-value=0.0025 Score=66.74 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=28.8
Q ss_pred ccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
.|.-.++||+|+||+||+|.- .+|+.||||++..
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~ 89 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPN 89 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETT
T ss_pred CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECc
Confidence 455567899999999999986 4799999999864
No 183
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=96.22 E-value=0.0022 Score=64.38 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.3
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
++|.-.++||+|+||+||+|+- .+|+.||||++.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~ 66 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILE 66 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEE
Confidence 3577778899999999999986 479999999984
No 184
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=96.02 E-value=0.0033 Score=62.99 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=27.6
Q ss_pred ccccceEeecCCCCcEEEEEe----CCCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKL----QSEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l----~~g~~vAVK~l~~ 772 (775)
+|.-.+.||+|+||+||+|+- ..|+.||||+++.
T Consensus 25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~ 62 (304)
T 3ubd_A 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKK 62 (304)
T ss_dssp GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEES
T ss_pred ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEeh
Confidence 466667899999999999975 2478999999853
No 185
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=95.98 E-value=0.0035 Score=64.00 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=29.3
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
++|.-.++||+|+||+||+|+. .|+.||||++..
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~ 57 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPI 57 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECG
T ss_pred hhchhhheecccCceEEEEEEE-CCCEEEEEEeec
Confidence 4567778899999999999998 589999999853
No 186
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=95.97 E-value=0.0028 Score=66.93 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=36.6
Q ss_pred cHHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 729 TYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 729 ~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.++++..++++|...++||+|+||+||+|+.. +|+.||||++.
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~ 103 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLS 103 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEe
Confidence 34566667789999999999999999999985 58999999974
No 187
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=95.89 E-value=0.004 Score=66.98 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=31.9
Q ss_pred hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
.++|.-.++||+|+||.||+|...+++.||||+++.+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~ 223 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG 223 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC
Confidence 3456677889999999999999988999999999753
No 188
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=95.89 E-value=0.0044 Score=64.66 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.4
Q ss_pred cccccceEeecCCCCcEEEEEeC----CCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~~ 773 (775)
++|...++||+|+||.||+|+.. +|..||||+++..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~ 84 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG 84 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc
Confidence 45677789999999999999985 5788999998753
No 189
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.84 E-value=0.0092 Score=51.20 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=34.7
Q ss_pred EEEccCCcCc-cCCchhHHhhhccccEEECcCCcCcccCCccccCCCCCcEEeCCCCcCc
Q 043943 544 YLNLSNNEFS-HKIPTQFEKLQLQLSELDLSQNFLEGEIPSQICNMESLVKLNLSYNQLS 602 (775)
Q Consensus 544 ~L~Ls~n~l~-~~~~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 602 (775)
.++.+++.++ ..+|.. ++.+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4455555554 233322 2236777777777777555666777778888888888764
No 190
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=95.84 E-value=0.0035 Score=65.29 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=30.5
Q ss_pred HhcccccceEeecCCCCcEEEEE------eCCCCEEEEEEccCC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAK------LQSEDLIAVKKFNSQ 773 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~------l~~g~~vAVK~l~~~ 773 (775)
..+.|...++||+|+||+||+|+ ..+|+.||||++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 106 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA 106 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC
Confidence 35667778899999999999994 457899999998753
No 191
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=95.82 E-value=0.0059 Score=60.75 Aligned_cols=42 Identities=12% Similarity=0.156 Sum_probs=32.8
Q ss_pred HHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 731 DQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
..+.....-+.-.+.||+|+||.||+|...+|+.||||.+..
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~ 124 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKV 124 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEEC
Confidence 344444444555588999999999999998899999999863
No 192
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=95.73 E-value=0.0056 Score=63.53 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=25.6
Q ss_pred HHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 731 DQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.+.....++|.-.++||+|+||.||+|... +|+.||||++..
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 58 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ 58 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEEC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEec
Confidence 344566788998999999999999999984 689999999854
No 193
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=95.68 E-value=0.0062 Score=63.66 Aligned_cols=36 Identities=28% Similarity=0.490 Sum_probs=30.5
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~ 773 (775)
++|.-.+.||+|+||.||+|... +|+.||||++...
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~ 150 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET 150 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc
Confidence 34666688999999999999996 7899999998653
No 194
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=95.63 E-value=0.0078 Score=62.57 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 730 YDQIIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 730 ~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.......++|...+.||+|+||.||+|... +|+.||||.+..
T Consensus 86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~ 129 (365)
T 2y7j_A 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEV 129 (365)
T ss_dssp HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEET
T ss_pred chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEc
Confidence 3444455667888899999999999999985 799999998754
No 195
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=95.62 E-value=0.0025 Score=66.22 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=38.3
Q ss_pred ccccHHHHHHHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 726 GKITYDQIIRATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 726 ~~~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
..+++++-....++|...++||+|+||+||+|+. .+|+.||||++..
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 70 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN 70 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc
Confidence 3455655555678898889999999999999998 4789999999863
No 196
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.62 E-value=0.0058 Score=67.67 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=30.3
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
++|.-.++||+|+||+||++.-. +|+.||||++.
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~ 223 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEe
Confidence 66888899999999999999874 69999999984
No 197
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=95.61 E-value=0.007 Score=65.00 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=30.9
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
+.|.-..+||+|+||.||+|...++..||||+++.+
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~ 219 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG 219 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccC
Confidence 446667889999999999999988889999999753
No 198
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=95.61 E-value=0.0059 Score=61.83 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=30.2
Q ss_pred hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
.++|.-...||+|+||+||+|+. +|+.||||++..
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~ 70 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILME 70 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECC
T ss_pred hhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecC
Confidence 35577778899999999999998 789999999864
No 199
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=95.57 E-value=0.0061 Score=64.02 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=30.4
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
+.|...++||+|+||.||+|...+|+.||||++..
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~ 90 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNL 90 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEec
Confidence 34667788999999999999998899999999853
No 200
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=95.53 E-value=0.0056 Score=61.04 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.0
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
++|...+.||+|+||.||+|...++..||||++...
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~ 59 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG 59 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC
Confidence 346667889999999999999988889999998753
No 201
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=95.52 E-value=0.0075 Score=62.42 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=29.9
Q ss_pred cccccceEeecCCCCcEEEEEe----CCCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL----QSEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l----~~g~~vAVK~l~ 771 (775)
++|...++||+|+||.||+|.. .+|+.||||++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~ 91 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLK 91 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEES
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEe
Confidence 5677788999999999999998 478999999985
No 202
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=95.46 E-value=0.0089 Score=61.59 Aligned_cols=32 Identities=13% Similarity=0.070 Sum_probs=28.0
Q ss_pred ccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 741 DEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 741 ~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
.-...||+|+||.||+|.-++|+.||||.++.
T Consensus 98 ~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~ 129 (397)
T 4gyi_A 98 SVGSRIGVGKESDIMIVADEKGKQKVLKIHRL 129 (397)
T ss_dssp EEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred EecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence 34577999999999999999999999998753
No 203
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=95.44 E-value=0.0074 Score=64.10 Aligned_cols=34 Identities=38% Similarity=0.656 Sum_probs=29.1
Q ss_pred ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.|...++||+|+||.||+|+.. +|+.||||++..
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~ 89 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQ 89 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecc
Confidence 3556688999999999999985 699999999854
No 204
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=95.42 E-value=0.0085 Score=61.59 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=31.1
Q ss_pred hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccCC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNSQ 773 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~~ 773 (775)
.++|.....||+|+||.||+|.. .+|+.||||++...
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~ 87 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRAT 87 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccc
Confidence 45666778899999999999996 57999999998653
No 205
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=95.41 E-value=0.0026 Score=64.98 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=36.2
Q ss_pred ccHHHHHHHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+.+.++..+++.|.-.+.||+|+||.||+|.. .+|+.||||++..
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~ 59 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDV 59 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEec
Confidence 44555556678888889999999999999998 4789999999853
No 206
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=95.40 E-value=0.011 Score=58.96 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=29.3
Q ss_pred ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ 773 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~ 773 (775)
.|.-...||+|+||.||+|.-. +|+.||||++...
T Consensus 32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~ 67 (286)
T 3uqc_A 32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQ 67 (286)
T ss_dssp TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTT
T ss_pred cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcc
Confidence 3555678999999999999985 4899999999753
No 207
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=95.36 E-value=0.0063 Score=63.62 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=30.1
Q ss_pred hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
++.|...+.||+|+||.||+|.. .+|+.||||++.
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~ 107 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPY 107 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEe
Confidence 45566678899999999999997 579999999985
No 208
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=95.30 E-value=0.0098 Score=61.36 Aligned_cols=36 Identities=25% Similarity=0.469 Sum_probs=30.9
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++.|.....||+|+||.||+|+.. +|+.||||++..
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~ 88 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKK 88 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEecc
Confidence 456777789999999999999986 578999999864
No 209
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=95.27 E-value=0.0086 Score=64.26 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=30.1
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
++|.-.++||+|+||.||+|.. .|+.||||+++.+
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~ 227 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND 227 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSC
T ss_pred HHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCc
Confidence 4566678899999999999999 5889999999754
No 210
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=95.21 E-value=0.0077 Score=62.62 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=29.9
Q ss_pred HhcccccceEeecCCCCcEEEEEeCC------CCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~ 772 (775)
.+++|.-.++||+|+||.||+|...+ |+.||||++..
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~ 75 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPS 75 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEET
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeec
Confidence 35577778899999999999999864 47899999764
No 211
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=95.20 E-value=0.0097 Score=60.29 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=34.8
Q ss_pred ccHHHHHHHhcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 728 ITYDQIIRATNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 728 ~~~~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
+.++.+.-..+.|.....||+|+||.||++...+|+.||||++..
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~ 62 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNL 62 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEEC
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEecc
Confidence 333444344566777889999999999999998899999999853
No 212
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=95.19 E-value=0.0097 Score=65.40 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=30.8
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~~ 773 (775)
+.|.-..+||+|+||.||+|...++..||||+++.+
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~ 302 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG 302 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTT
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCC
Confidence 346667889999999999999988889999999753
No 213
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=95.18 E-value=0.0098 Score=61.92 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.8
Q ss_pred cccccceEeecCCCCcEEEEEe--------CCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL--------QSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l--------~~g~~vAVK~l~~~ 773 (775)
++|.-.+.||+|+||.||+|+. .+|..||||++...
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~ 124 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD 124 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC
Confidence 4566678899999999999986 24568999999753
No 214
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=95.18 E-value=0.0089 Score=62.59 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=31.6
Q ss_pred HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.+++|...++||+|+||+||+|.-. +|+.||||++..
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 89 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN 89 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec
Confidence 3567888889999999999999875 688999999864
No 215
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=95.16 E-value=0.014 Score=59.73 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=28.1
Q ss_pred cccccceEeecCCCCcEEEEEe--------CCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL--------QSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l--------~~g~~vAVK~l~~~ 773 (775)
++|.-.+.||+|+||.||+|.. .+|+.||||++...
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~ 78 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD 78 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccC
Confidence 4566678899999999999987 35789999998753
No 216
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=95.12 E-value=0.012 Score=61.31 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=28.6
Q ss_pred cccccceEeecCCCCcEEEEEeC------CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~ 772 (775)
++|.-.++||+|+||+||+|.+. +|+.||||++..
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~ 111 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE 111 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccc
Confidence 34666788999999999999963 466899999864
No 217
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=95.09 E-value=0.011 Score=57.89 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.7
Q ss_pred cceEeecCCCCcEEEEEe-CCCCE--EEEEEccC
Q 043943 742 EEYCIGKGAQGSLYKAKL-QSEDL--IAVKKFNS 772 (775)
Q Consensus 742 ~~~~iG~Gg~G~VYkg~l-~~g~~--vAVK~l~~ 772 (775)
-...||+|+||.||+|.. .+|+. ||||.+..
T Consensus 51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~ 84 (258)
T 1zth_A 51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRI 84 (258)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEEC
Confidence 346799999999999998 78999 99998643
No 218
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=95.08 E-value=0.014 Score=59.70 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=26.3
Q ss_pred ccHHHHHHHhccccc---------ceEeecCCCCcEEEEEeCC-----CCEEEEEEccCC
Q 043943 728 ITYDQIIRATNDFDE---------EYCIGKGAQGSLYKAKLQS-----EDLIAVKKFNSQ 773 (775)
Q Consensus 728 ~~~~~l~~aT~~f~~---------~~~iG~Gg~G~VYkg~l~~-----g~~vAVK~l~~~ 773 (775)
+...+..+++..|.. .++||+|+||.||+|.... +..||||++...
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~ 84 (333)
T 1mqb_A 25 AMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG 84 (333)
T ss_dssp -------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT
T ss_pred cccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCC
Confidence 344555566666655 4889999999999999742 236999998753
No 219
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=95.08 E-value=0.012 Score=60.42 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=29.2
Q ss_pred hccccc-ceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDE-EYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~-~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+++|.- +++||+|+||+||+|... +|+.||||++..
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 64 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYD 64 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecC
Confidence 344555 457999999999999986 699999999854
No 220
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=95.07 E-value=0.01 Score=61.11 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=30.1
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+.|...+.||+|+||.||+|.- .+|+.||||++..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~ 89 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY 89 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEES
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEcc
Confidence 4477778999999999999986 5899999999854
No 221
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=95.06 E-value=0.01 Score=61.19 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=30.0
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.++|.-.++||+|+||+||+|+.. +|+.||||++.
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~ 57 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLK 57 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEE
Confidence 456878889999999999999975 68999999985
No 222
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=95.05 E-value=0.0094 Score=62.12 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=30.0
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
..|...++||+|+||.||+|... +|+.||||++..
T Consensus 62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 97 (371)
T 3q60_A 62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTM 97 (371)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEe
Confidence 44666788999999999999964 789999999865
No 223
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=95.03 E-value=0.01 Score=60.85 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=31.0
Q ss_pred hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
++.|.....||+|+||.||+|.- .+|+.||||++..
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~ 59 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKK 59 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEES
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEeh
Confidence 45688889999999999999985 5789999999864
No 224
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=95.01 E-value=0.015 Score=59.72 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=31.7
Q ss_pred HhcccccceEeecCCCCcEEEEEeC------CCCEEEEEEccCC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNSQ 773 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~~ 773 (775)
..++|.-.+.||+|+||.||+|... +|+.||||++...
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 88 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE 88 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccc
Confidence 4567888899999999999999984 3478999998753
No 225
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=94.97 E-value=0.01 Score=60.36 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=30.0
Q ss_pred hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
.+.|.-..+||+|+||.||+|.. .+|+.||||++..
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~ 78 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEK 78 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEG
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEec
Confidence 34566778899999999999985 5789999999853
No 226
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=94.96 E-value=0.01 Score=64.58 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=30.4
Q ss_pred cccccceEeecCCCCcEEEEEeCC-CCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQS-EDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~-g~~vAVK~l~~~ 773 (775)
.+|.-.++||+|+||.||+|...+ |+.||||+++.+
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~ 256 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED 256 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc
Confidence 346667889999999999999964 889999999754
No 227
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=94.93 E-value=0.0093 Score=61.14 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=30.3
Q ss_pred hcccccceEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~ 771 (775)
.+.|.-.++||+|+||.||+|+. .|+.||||++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~ 69 (337)
T 3mdy_A 36 AKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFF 69 (337)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEE
T ss_pred ccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEe
Confidence 45688889999999999999998 58999999974
No 228
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=94.93 E-value=0.015 Score=59.83 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=32.8
Q ss_pred HHHHhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 733 IIRATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 733 l~~aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
+....+.|.-...||+|+||.||+|... +|+.||||++.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~ 60 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMN 60 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehh
Confidence 3445677888899999999999999874 68899999874
No 229
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=94.87 E-value=0.015 Score=58.82 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 735 RATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 735 ~aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
.-.++|...++||+|+||.||+|.. .+|+.||||++..
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~ 66 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPR 66 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCS
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEec
Confidence 3456788889999999999999986 4789999999854
No 230
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=94.86 E-value=0.011 Score=60.00 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=33.4
Q ss_pred HHHHHHhcccccceEeecCCCCcEEEEEe------CCCCEEEEEEccCC
Q 043943 731 DQIIRATNDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNSQ 773 (775)
Q Consensus 731 ~~l~~aT~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~~ 773 (775)
.+..-..++|.-.+.||+|+||+||+|.. .+|+.||||++...
T Consensus 20 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 68 (316)
T 2xir_A 20 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG 68 (316)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred cceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccC
Confidence 33333456788889999999999999985 35689999998653
No 231
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=94.85 E-value=0.0061 Score=62.08 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=32.8
Q ss_pred HHHHHhcccccceEeecCCCCcEEEEEeC------CCCEEEEEEccC
Q 043943 732 QIIRATNDFDEEYCIGKGAQGSLYKAKLQ------SEDLIAVKKFNS 772 (775)
Q Consensus 732 ~l~~aT~~f~~~~~iG~Gg~G~VYkg~l~------~g~~vAVK~l~~ 772 (775)
+...+.++|...+.||+|+||.||+|+.. +|+.||||++..
T Consensus 19 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~ 65 (322)
T 1p4o_A 19 EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNE 65 (322)
T ss_dssp TTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCT
T ss_pred hhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEeccc
Confidence 33345667888899999999999999874 368899999864
No 232
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=94.84 E-value=0.012 Score=61.61 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=30.1
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|.-.++||+|+||+||+|+.. +|+.||||+++.
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k 87 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKK 87 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEG
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh
Confidence 45777889999999999999985 578999999853
No 233
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=94.83 E-value=0.02 Score=60.78 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=31.0
Q ss_pred HhcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
..+.|.-.+.||+|+||+||+|.-. +|+.||||++.
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~ 169 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIIS 169 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEE
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEE
Confidence 3567888889999999999999874 68999999975
No 234
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=94.82 E-value=0.018 Score=59.96 Aligned_cols=34 Identities=35% Similarity=0.456 Sum_probs=29.7
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
++|.-.++||+|+||.||+|+.. +|+.||||++.
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~ 72 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQ 72 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 45777889999999999999985 58899999985
No 235
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=94.80 E-value=0.014 Score=58.99 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=29.4
Q ss_pred cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~~ 773 (775)
++|.-.+.||+|+||.||+|+. .+|+.||||++...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 64 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS 64 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcc
Confidence 3466678899999999999985 35789999998753
No 236
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=94.77 E-value=0.019 Score=58.07 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.1
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
++|.-.+.||+|+||.||+|.. .+|+.||||++..
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~ 67 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQI 67 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECT
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeeh
Confidence 4577778899999999999996 4799999999863
No 237
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=94.75 E-value=0.017 Score=59.04 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=31.3
Q ss_pred HhcccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
..++|....+||+|+||+||+|.- .+|+.||||++..
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 69 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRL 69 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCC
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcc
Confidence 346688889999999999999985 4789999999863
No 238
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=94.73 E-value=0.014 Score=60.73 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=25.7
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+.|.....||+|+||.||+|.- .+|+.||||++..
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~ 64 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR 64 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSS
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence 4566678899999999999985 4789999999854
No 239
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=94.73 E-value=0.016 Score=61.71 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=29.3
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
..|...++||+|+||.||+|.-. +|+.||||++..
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~ 132 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN 132 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC
Confidence 34666788999999999999875 588999999864
No 240
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=94.69 E-value=0.018 Score=59.90 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=23.8
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+.|.....||+|+||.||+|.- .+|+.||||++..
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~ 60 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYR 60 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSS
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence 4566778899999999999997 4799999999853
No 241
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=94.69 E-value=0.015 Score=61.91 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=28.4
Q ss_pred hcccccceEeecCCCCcE-EEEEeCCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSL-YKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~V-Ykg~l~~g~~vAVK~l~~ 772 (775)
...|....+||+|+||+| |++. .+|+.||||++..
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~-~~~~~vAvK~~~~ 58 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGM-FDNRDVAVKRILP 58 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEE-SSSSEEEEEEECT
T ss_pred cEEEecCCeeecCcCEEEEEEEE-eCCeEEEEEEECH
Confidence 456788899999999995 5555 4899999999864
No 242
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=94.67 E-value=0.012 Score=60.41 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=30.9
Q ss_pred hcccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
.++|.-...||+|+||.||+|+. +|+.||||++..
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~ 75 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS 75 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG
T ss_pred cccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc
Confidence 45688889999999999999998 699999999853
No 243
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=94.66 E-value=0.016 Score=58.67 Aligned_cols=35 Identities=29% Similarity=0.561 Sum_probs=24.4
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|.....||+|+||.||+|... +|+.||||++..
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 60 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRR 60 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEET
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecc
Confidence 45777788999999999999985 799999999864
No 244
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=94.65 E-value=0.02 Score=58.38 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=29.9
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
++|.-.++||+|+||+||+|.- .+|+.||||++..
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 71 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP 71 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc
Confidence 4566678899999999999985 5789999999864
No 245
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=94.64 E-value=0.015 Score=61.10 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=29.7
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+.|.-.++||+|+||+||+|.- .+|+.||||++..
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 72 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS 72 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec
Confidence 4566778899999999999985 4688999999864
No 246
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=94.63 E-value=0.013 Score=59.84 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=29.8
Q ss_pred hcccccceEeecCCCCcEEEEEeCC------CCEEEEEEccCC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQS------EDLIAVKKFNSQ 773 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~------g~~vAVK~l~~~ 773 (775)
.++|.-.+.||+|+||.||+|.... +..||||++...
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 87 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKST 87 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTT
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccc
Confidence 4667778899999999999999742 247999998653
No 247
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=94.58 E-value=0.022 Score=58.74 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=29.4
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
++|...+.||+|+||.||+++.. +|+.||||++.
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~ 75 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILD 75 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEE
Confidence 45677788999999999999975 69999999974
No 248
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=94.58 E-value=0.02 Score=62.51 Aligned_cols=34 Identities=26% Similarity=0.514 Sum_probs=30.0
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
++|...++||+|+||.||+|... +|+.||||++.
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~ 219 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLN 219 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEE
Confidence 56777789999999999999985 69999999984
No 249
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=94.56 E-value=0.018 Score=59.24 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=29.5
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~ 771 (775)
++|.-...||+|+||.||+|.. +|+.||||++.
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~ 63 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYE 63 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEE
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEee
Confidence 4577778899999999999999 99999999975
No 250
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=94.55 E-value=0.021 Score=57.97 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=27.9
Q ss_pred cccceEeecCCCCcEEEEEeC-----CCCEEEEEEccCC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-----SEDLIAVKKFNSQ 773 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-----~g~~vAVK~l~~~ 773 (775)
|...+.||+|+||+||+|.+. +|+.||||++...
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 71 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD 71 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc
Confidence 355578999999999999863 6789999998754
No 251
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=94.49 E-value=0.021 Score=59.49 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=29.8
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.|.....||+|+||.||+|.-. +|+.||||++..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~ 77 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSR 77 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 45666788999999999999864 789999999864
No 252
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=94.47 E-value=0.02 Score=59.16 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=29.3
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.|.....||+|+||.||+|.-. +|+.||||++..
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSR 59 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESS
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 34566678999999999999874 689999999864
No 253
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=94.46 E-value=0.023 Score=57.51 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=29.3
Q ss_pred cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~~ 773 (775)
++|.-...||+|+||.||+|.. .+|+.||||++...
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 64 (314)
T 2ivs_A 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN 64 (314)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT
T ss_pred hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC
Confidence 4566678899999999999986 35689999998653
No 254
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=94.45 E-value=0.021 Score=58.38 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=29.4
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.|....+||+|+||.||+|... +|+.||||++..
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 60 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLE 60 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEES
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEec
Confidence 34666788999999999999985 589999999743
No 255
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=94.42 E-value=0.019 Score=59.99 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=28.4
Q ss_pred cccccceEeecCCCCcEEEEEe--------CCCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL--------QSEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l--------~~g~~vAVK~l~~~ 773 (775)
+.|.-.++||+|+||+||+|+. .++..||||++...
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~ 112 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD 112 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc
Confidence 4466668899999999999986 23467999998653
No 256
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=94.41 E-value=0.02 Score=59.67 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=22.7
Q ss_pred cccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+...++||+|+||.||+|.. .+|+.||||++..
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~ 124 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKT 124 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCCEEEEEEEEC
T ss_pred eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcc
Confidence 34457799999999999987 4799999999864
No 257
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=94.37 E-value=0.028 Score=58.23 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=30.7
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccCC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNSQ 773 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~~ 773 (775)
++|...++||+|+||.||+|... +|+.||||++...
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~ 69 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE 69 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccc
Confidence 45777789999999999999985 6899999998643
No 258
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=94.30 E-value=0.021 Score=62.70 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=30.6
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.++|...++||+|+||.||+|... +|+.||||++.
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~ 218 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLE 218 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEE
Confidence 356778899999999999999985 79999999984
No 259
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=94.30 E-value=0.017 Score=59.65 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=28.0
Q ss_pred cccccceEeecCCCCcEEEEEeCC---------CCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQS---------EDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~---------g~~vAVK~l~~ 772 (775)
++|.-.+.||+|+||.||+|.... |+.||||++..
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~ 85 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAK 85 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEET
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecc
Confidence 456677889999999999999863 88999999864
No 260
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=94.29 E-value=0.024 Score=57.68 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=28.7
Q ss_pred ccccceEeecCCCCcEEEEEe-----CCCCEEEEEEccCC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKL-----QSEDLIAVKKFNSQ 773 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l-----~~g~~vAVK~l~~~ 773 (775)
.|.-.+.||+|+||.||+|.. .+|+.||||++...
T Consensus 42 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 81 (326)
T 2w1i_A 42 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS 81 (326)
T ss_dssp GEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC
T ss_pred HceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC
Confidence 355567899999999999985 36889999998653
No 261
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=94.28 E-value=0.02 Score=61.25 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=30.3
Q ss_pred hcccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
.++|...++||+|+||.||+|.- .+|+.||||++.
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~ 182 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILK 182 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEE
Confidence 35677889999999999999986 478999999985
No 262
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=94.24 E-value=0.022 Score=58.30 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.+|.-..+||+|+||.||+|... +|+.||||++.
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 62 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLL 62 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEec
Confidence 45667788999999999999964 78999999874
No 263
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=94.22 E-value=0.03 Score=57.06 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=26.2
Q ss_pred cccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~ 772 (775)
++|.-...||+|+||.||+|.. .+|+.||||++..
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~ 70 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE 70 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCS
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecc
Confidence 4566778899999999999985 3577999999864
No 264
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=94.20 E-value=0.021 Score=58.74 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.9
Q ss_pred hcccccceEeecCCCCcEEEEEe------CCCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKL------QSEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l------~~g~~vAVK~l~~ 772 (775)
.++|.-.+.||+|+||.||+|.. .+|+.||||++..
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~ 85 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKE 85 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEeccc
Confidence 46677788999999999999996 2466899999864
No 265
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=94.20 E-value=0.02 Score=58.21 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=25.4
Q ss_pred hcccccceEeecCCCCcEEEEEeCCC----CEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQSE----DLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~~g----~~vAVK~l~~ 772 (775)
.++|.-.+.||+|+||.||+|..... ..||||++..
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~ 61 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKA 61 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecc
Confidence 45677788999999999999998533 2799999864
No 266
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=94.19 E-value=0.021 Score=58.16 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=28.9
Q ss_pred ccccceEeecCCCCcEEEEEe-----CCCCEEEEEEccCC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKL-----QSEDLIAVKKFNSQ 773 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l-----~~g~~vAVK~l~~~ 773 (775)
+|.-...||+|+||.||+|++ .+|+.||||++...
T Consensus 24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 63 (327)
T 3lxl_A 24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS 63 (327)
T ss_dssp GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC
T ss_pred hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC
Confidence 455667899999999999995 46889999998643
No 267
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=94.14 E-value=0.024 Score=57.38 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=27.4
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~ 771 (775)
++|.....||+|+||.||++.- .+|+.||||++.
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~ 63 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRIL 63 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEE
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEe
Confidence 4566778899999999999997 589999999874
No 268
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=94.13 E-value=0.023 Score=62.73 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=29.4
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
++|.-.+.||+|+||.||+|.- .+|+.||||++..
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~ 192 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMT 192 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEec
Confidence 4566667899999999999987 4799999999853
No 269
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=94.11 E-value=0.023 Score=57.46 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=27.5
Q ss_pred HhcccccceEeecCCCCcEEEEEeC----CCCEEEEEEccC
Q 043943 736 ATNDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNS 772 (775)
Q Consensus 736 aT~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~ 772 (775)
..+.|.-..+||+|+||.||+|... .|+.||||++..
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~ 72 (313)
T 3brb_A 32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKL 72 (313)
T ss_dssp CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC--
T ss_pred CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEec
Confidence 3456777788999999999999874 244899999864
No 270
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=94.07 E-value=0.028 Score=56.88 Aligned_cols=36 Identities=31% Similarity=0.495 Sum_probs=25.9
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.+.|.....||+|+||.||+|... +|+.||||++..
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~ 64 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPV 64 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEET
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCc
Confidence 456777789999999999999985 589999999864
No 271
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=94.05 E-value=0.023 Score=61.14 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=20.9
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.|.-.++||+|+||+||+|.-. +|+.||||++..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~ 88 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILR 88 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECS
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEech
Confidence 45666788999999999999864 789999999854
No 272
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=94.05 E-value=0.021 Score=59.95 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=28.8
Q ss_pred ccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
.|...++||+|+||+||+|...++..||||++..
T Consensus 41 ~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~ 74 (394)
T 4e7w_A 41 AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQ 74 (394)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTEEEEEEEEEC
T ss_pred eEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEec
Confidence 3556688999999999999998777799999854
No 273
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=94.00 E-value=0.024 Score=58.67 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.9
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.++|...+.||+|+||.||+|.-. +|+.||||++..
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~ 64 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINT 64 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEc
Confidence 456777889999999999999874 689999999854
No 274
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=93.99 E-value=0.025 Score=63.85 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=30.4
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.++|.-.++||+|+||.||+|... +|+.||||+++
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~ 375 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILK 375 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEE
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEe
Confidence 356878889999999999999975 68899999985
No 275
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=93.96 E-value=0.025 Score=60.30 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=29.7
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|.-.++||+|+||.||+|.-. +|+.||||++..
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~ 61 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNR 61 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCc
Confidence 45667788999999999999874 688999999864
No 276
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=93.92 E-value=0.031 Score=56.96 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=25.8
Q ss_pred eEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++||+|+||.||+|... +|+.||||++..
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 64 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKSTGQEYAAKFLKK 64 (327)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred ceeCCCCCeEEEEEEECCCCCEEEEEEEeh
Confidence 77999999999999875 689999999853
No 277
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=93.91 E-value=0.026 Score=58.17 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=28.4
Q ss_pred ccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.|.-.+.||+|+||+||+|.-. +|+.||||++.
T Consensus 25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~ 58 (351)
T 3c0i_A 25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVD 58 (351)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEE
Confidence 4666788999999999999874 78999999874
No 278
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=93.89 E-value=0.028 Score=58.26 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=30.1
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.+.|....+||+|+||.||+|.-. +|+.||||++..
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 62 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISP 62 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecc
Confidence 345677788999999999999864 788999999864
No 279
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=93.86 E-value=0.034 Score=56.07 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=30.1
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|.-..+||+|+||.||+|... +|+.||||++..
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~ 69 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSE 69 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGG
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCc
Confidence 55777788999999999999975 788999999853
No 280
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=93.85 E-value=0.031 Score=62.39 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred EeecCCCCcEEEEEeC---CCCEEEEEEccCC
Q 043943 745 CIGKGAQGSLYKAKLQ---SEDLIAVKKFNSQ 773 (775)
Q Consensus 745 ~iG~Gg~G~VYkg~l~---~g~~vAVK~l~~~ 773 (775)
.||+|+||.||+|... +|..||||+++..
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~ 374 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG 374 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC
Confidence 6999999999999884 5678999999753
No 281
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=93.76 E-value=0.033 Score=59.90 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=29.5
Q ss_pred cccccceEeecCCCCcEEEEEe-CCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKL-QSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l-~~g~~vAVK~l~~ 772 (775)
+.|...++||+|+||+||+|.- .+|+.||||++..
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~ 97 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR 97 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEES
T ss_pred CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECc
Confidence 4566778899999999999975 4689999999853
No 282
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=93.61 E-value=0.034 Score=57.82 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=29.5
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++|.....||+|+||.||+|.-. +|+.||||++..
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 60 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 60 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEecc
Confidence 45667788999999999999864 689999999854
No 283
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=93.58 E-value=0.029 Score=62.83 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=24.7
Q ss_pred eEeecCCCCcEEEEEeC---CCCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKLQ---SEDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~---~g~~vAVK~l~~ 772 (775)
++||+|+||.||+|.+. .|+.||||+++.
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~ 406 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKN 406 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECG
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEecc
Confidence 57999999999999763 467899999864
No 284
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=93.54 E-value=0.043 Score=57.03 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=25.7
Q ss_pred cccceEeecCCCCcEEEEEeC--CC--CEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ--SE--DLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~--~g--~~vAVK~l~~ 772 (775)
|.-.++||+|+||+||+|... ++ ..||||++..
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~ 127 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR 127 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCS
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCC
Confidence 334578999999999999984 32 3689999864
No 285
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=93.46 E-value=0.039 Score=58.03 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=25.5
Q ss_pred eEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
++||+|+||+||+|.-. +|+.||||++..
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~ 97 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD 97 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeCc
Confidence 67999999999999874 689999999853
No 286
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=93.43 E-value=0.027 Score=57.85 Aligned_cols=35 Identities=26% Similarity=0.191 Sum_probs=23.6
Q ss_pred cccccceEeecCCCCcEEEEEeC----CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~ 772 (775)
++|.-.+.||+|+||.||+|... ++..||||+...
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~ 75 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQ 75 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEEC
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeec
Confidence 45666788999999999999985 578999999864
No 287
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=93.40 E-value=0.044 Score=57.27 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=29.9
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.|...+.||+|+||.||+|.-. +|+.||||.+..
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~ 86 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINT 86 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecc
Confidence 45677788999999999999875 689999999854
No 288
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=93.35 E-value=0.042 Score=54.75 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=26.8
Q ss_pred cccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 740 FDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 740 f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
|.-...||+|+||.||+|... ++..||||++..
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~ 61 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQD 61 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEG
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecc
Confidence 334467999999999999874 678999999753
No 289
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=93.27 E-value=0.049 Score=54.85 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=26.4
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
+.|.-..+||+|+||.||+|... ..||||.++.
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~ 68 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKV 68 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESS--SEEEEEECCC
T ss_pred cceEEEeEecCCCCeEEEEEEEC--CEEEEEEEec
Confidence 34566688999999999999873 3699998864
No 290
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=92.98 E-value=0.05 Score=54.44 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=25.8
Q ss_pred ccccceEeecCCCCcEEEEEeCCC----CEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQSE----DLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~~g----~~vAVK~l~~ 772 (775)
.|.-..+||+|+||+||+|...+. ..||||++..
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~ 63 (298)
T 3f66_A 26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR 63 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETT
T ss_pred ehhhcceeeecCCceEEEEEEecCCCceeEEEEEeccc
Confidence 355557899999999999997432 2689999864
No 291
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=92.89 E-value=0.054 Score=58.96 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.3
Q ss_pred hcccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 737 TNDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 737 T~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.+.|...++||+|+||+||+|.-. +|+.||||++..
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~ 71 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKK 71 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEh
Confidence 455777789999999999999975 678999999853
No 292
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=92.82 E-value=0.052 Score=56.85 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=29.5
Q ss_pred cccccceEeecC--CCCcEEEEEeC-CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKG--AQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~G--g~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
+.|.-..+||+| +||+||+|.-. +|+.||||++..
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~ 62 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINL 62 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEG
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecc
Confidence 345566889999 99999999985 799999999853
No 293
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=92.79 E-value=0.048 Score=59.03 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=28.8
Q ss_pred ccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
.|...++||+|+||.||+|.-. +|+.||||++.
T Consensus 27 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~ 60 (484)
T 3nyv_A 27 RYKGQRVLGKGSFGEVILCKDKITGQECAVKVIS 60 (484)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEE
Confidence 4666788999999999999985 78999999984
No 294
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=92.75 E-value=0.048 Score=61.88 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=29.8
Q ss_pred cccccceEeecCCCCcEEEEEeC--CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ--SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~--~g~~vAVK~l~~ 772 (775)
+.|.-..+||+||||.||+|... +|+.||||++..
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~ 116 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVH 116 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCS
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCc
Confidence 45667788999999999999975 689999999854
No 295
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=92.59 E-value=0.057 Score=55.15 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=28.8
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
+.|...++||+|+||.||++... +|+.||||.+.
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~ 75 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVP 75 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEec
Confidence 45666788999999999999985 57899999875
No 296
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=92.11 E-value=0.072 Score=57.79 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.2
Q ss_pred ccccceEeecCCCCcEEEEEeC-CCCEEEEEEccC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ-SEDLIAVKKFNS 772 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~~ 772 (775)
.|...++||+|+||+||+|.-. +|+.||||++..
T Consensus 38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~ 72 (494)
T 3lij_A 38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRK 72 (494)
T ss_dssp HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC
T ss_pred CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEec
Confidence 4666788999999999999975 789999999853
No 297
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=91.60 E-value=0.1 Score=52.72 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=26.9
Q ss_pred cccccceEeecCCCCcEEEEEeCCCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQSEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~~ 772 (775)
++|....+||+|+||.||+|...+ .||||++..
T Consensus 33 ~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~ 65 (319)
T 2y4i_B 33 EQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDI 65 (319)
T ss_dssp SCEECCCBCCCSSSSEEEEEEESS--SEEEEECCC
T ss_pred HHeEEeeEeccCCceEEEEEEEcC--eEEEEEeec
Confidence 456667889999999999999843 499999863
No 298
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=91.57 E-value=0.13 Score=57.95 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=28.2
Q ss_pred cccccceEeecCCCCcEEEEEeC----CCCEEEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ----SEDLIAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~----~g~~vAVK~l~~ 772 (775)
+.|.-.+.||+|+||.||+|... .+..||||++..
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~ 428 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKN 428 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSS
T ss_pred ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecc
Confidence 44666688999999999999984 245799999864
No 299
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=91.55 E-value=0.084 Score=53.62 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=28.0
Q ss_pred cccccceEeecCCCCcEEEEEeC-CCCE--EEEEEccC
Q 043943 738 NDFDEEYCIGKGAQGSLYKAKLQ-SEDL--IAVKKFNS 772 (775)
Q Consensus 738 ~~f~~~~~iG~Gg~G~VYkg~l~-~g~~--vAVK~l~~ 772 (775)
++|.-...||+|+||.||+|... +|.. ||||++..
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~ 62 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKE 62 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeecc
Confidence 45667788999999999999974 5664 59999864
No 300
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=88.54 E-value=0.21 Score=54.65 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=18.6
Q ss_pred cceEeecCCCCcEEEEEeCCCCEEEEEEcc
Q 043943 742 EEYCIGKGAQGSLYKAKLQSEDLIAVKKFN 771 (775)
Q Consensus 742 ~~~~iG~Gg~G~VYkg~l~~g~~vAVK~l~ 771 (775)
..++||+|+||.||||.. .|+.||+|+..
T Consensus 340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~ 368 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSY-LDFDVIIKERV 368 (540)
T ss_dssp --------CCEEEEEEEC-SSCEEEEEEEC
T ss_pred CCCEEeeCCCEEEEEEEE-CCCeEEEEEEe
Confidence 456899999999999976 78999999864
No 301
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=83.67 E-value=0.5 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=18.5
Q ss_pred ccccceEeecCCCCcEEEEEeC
Q 043943 739 DFDEEYCIGKGAQGSLYKAKLQ 760 (775)
Q Consensus 739 ~f~~~~~iG~Gg~G~VYkg~l~ 760 (775)
.|.-..+||+|+||.||+|+..
T Consensus 25 ~y~~~~~lG~G~~g~Vy~~~~~ 46 (289)
T 3og7_A 25 QITVGQRIGSGSFGTVYKGKWH 46 (289)
T ss_dssp SCEEEEEEEECSSEEEEEEESS
T ss_pred ceeeeeEecCCCCeEEEEEEEc
Confidence 4566678999999999999973
No 302
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.30 E-value=8.6 Score=30.58 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=23.6
Q ss_pred CcccCcccccCCCCCCEEeCcCCCCCCCCchhccCCCCCCEEECCC
Q 043943 95 LFGIIPPQISQLFKLQYLDLSANKLSGKIPPEIGQLSFLSELSLYS 140 (775)
Q Consensus 95 ~~~~~~~~~~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~L~~ 140 (775)
++.+-..+|..|.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455556666666665544 3324444555666666555544
No 303
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.30 E-value=13 Score=29.43 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=15.2
Q ss_pred cccCCCCCCCEEeccCCcCcccCCcccCCCCCccEEEcc
Q 043943 173 PVIGNLISLSTLDLSLNQLIGSVPFFLGNLTNLVTLHLF 211 (775)
Q Consensus 173 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 211 (775)
.+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 33444444444444332 222333344444444444443
No 304
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.95 E-value=22 Score=23.14 Aligned_cols=21 Identities=14% Similarity=-0.028 Sum_probs=11.1
Q ss_pred HHHHHHHHhhheecccccccc
Q 043943 685 LALSIISIGLLFNSRRTKMVS 705 (775)
Q Consensus 685 ~~~~~~~~~~~~~~r~~~~~~ 705 (775)
+++++++...++...|+++.+
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhhhhHhh
Confidence 333334445566777665543
No 305
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.21 E-value=30 Score=22.48 Aligned_cols=12 Identities=8% Similarity=0.030 Sum_probs=6.5
Q ss_pred HHHhhheecccc
Q 043943 690 ISIGLLFNSRRT 701 (775)
Q Consensus 690 ~~~~~~~~~r~~ 701 (775)
..+++-.+++++
T Consensus 30 ~~~~~RRRr~~~ 41 (44)
T 2l2t_A 30 FAVYVRRKSIKK 41 (44)
T ss_dssp HHHHHHTTCSSC
T ss_pred HHHHhhhhhhhh
Confidence 345666655443
No 306
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=25.16 E-value=42 Score=34.36 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=21.7
Q ss_pred eEeecCCCCcEEEEEeC-CCCEEEEEEcc
Q 043943 744 YCIGKGAQGSLYKAKLQ-SEDLIAVKKFN 771 (775)
Q Consensus 744 ~~iG~Gg~G~VYkg~l~-~g~~vAVK~l~ 771 (775)
..+|.|.++.||++... +|+.|+||...
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~ 64 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAV 64 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEEC
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecc
Confidence 56899999999999875 57899999754
No 307
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=22.08 E-value=29 Score=17.92 Aligned_cols=11 Identities=27% Similarity=0.987 Sum_probs=7.6
Q ss_pred CCCCCccccee
Q 043943 43 KKNLCAWSGIY 53 (775)
Q Consensus 43 ~~~~c~w~gv~ 53 (775)
.+..|+|.|..
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 34578998864
Done!