BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043944
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 311 bits (797), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 151/186 (81%), Positives = 168/186 (90%), Gaps = 5/186 (2%)
Query: 1 MNGVDA----YGVMEA-QYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQK 55
M+GV+ YG +E QY+R HH+H RENQCTSALVKHI+AP+HLVWSLVRRFDQPQK
Sbjct: 20 MDGVEGGTAMYGGLETVQYVRTHHQHLCRENQCTSALVKHIKAPLHLVWSLVRRFDQPQK 79
Query: 56 YKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRN 115
YKPFVSRC V GD IGS+REVNVKSGLPATTSTERLELLDDEEHILGIKI+GGDHRL+N
Sbjct: 80 YKPFVSRCTVIGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHRLKN 139
Query: 116 YSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175
YSSI+TVHPEII+GR GT+VIESFVVDVP+GNTKDETCYFV+ALIRCNLKSLADVSER+A
Sbjct: 140 YSSILTVHPEIIEGRAGTMVIESFVVDVPQGNTKDETCYFVEALIRCNLKSLADVSERLA 199
Query: 176 VQDRTE 181
QD T+
Sbjct: 200 SQDITQ 205
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 274 bits (700), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 127/184 (69%), Positives = 157/184 (85%), Gaps = 2/184 (1%)
Query: 1 MNGVDAYGVMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFV 60
MNG D +E++YI++HHRHE E+QC+S LVKHI+AP+HLVWS+VRRFD+PQKYKPF+
Sbjct: 1 MNG-DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFI 59
Query: 61 SRCVVNGD-LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSI 119
SRCVV G L +GSVREV++KSGLPAT STE LE+LDD EHILGI+IVGGDHRL+NYSS
Sbjct: 60 SRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSST 119
Query: 120 MTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQDR 179
+++H E IDG+ GTL IESFVVDVPEGNTK+ETC+FV+ALI+CNL SLADV+ER+ +
Sbjct: 120 ISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQAESM 179
Query: 180 TEPI 183
+ I
Sbjct: 180 EKKI 183
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 273 bits (699), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 127/184 (69%), Positives = 157/184 (85%), Gaps = 2/184 (1%)
Query: 1 MNGVDAYGVMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFV 60
MNG D +E++YI++HHRHE E+QC+S LVKHI+AP+HLVWS+VRRFD+PQKYKPF+
Sbjct: 1 MNG-DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFI 59
Query: 61 SRCVVNGD-LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSI 119
SRCVV G L +GSVREV++KSGLPAT STE LE+LDD EHILGI+IVGGDHRL+NYSS
Sbjct: 60 SRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSST 119
Query: 120 MTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQDR 179
+++H E IDG+ GTL IESFVVDVPEGNTK+ETC+FV+ALI+CNL SLADV+ER+ +
Sbjct: 120 ISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQCNLNSLADVTERLQAESM 179
Query: 180 TEPI 183
+ I
Sbjct: 180 EKKI 183
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 270 bits (691), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 126/184 (68%), Positives = 156/184 (84%), Gaps = 2/184 (1%)
Query: 1 MNGVDAYGVMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFV 60
MNG D +E++YI++HHRHE E+QC+S LVKHI+AP+HLVWS+VRRFD+PQKYKPF+
Sbjct: 1 MNG-DETKKVESEYIKKHHRHELVESQCSSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFI 59
Query: 61 SRCVVNGD-LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSI 119
SRCVV G L +GSVREV++KSGLPAT STE LE+LDD EHILGI+IVGGDHRL+NYSS
Sbjct: 60 SRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVGGDHRLKNYSST 119
Query: 120 MTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQDR 179
+++H E IDG+ GTL IESFVVDVPEGNTK+ETC+FV+ALI+ NL SLADV+ER+ +
Sbjct: 120 ISLHSETIDGKTGTLAIESFVVDVPEGNTKEETCFFVEALIQSNLNSLADVTERLQAESM 179
Query: 180 TEPI 183
+ I
Sbjct: 180 EKKI 183
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/168 (50%), Positives = 119/168 (70%), Gaps = 5/168 (2%)
Query: 8 GVMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVN 66
G+ +++ HH H+ +QC S++V+ I AP VW+LVRRFD P+ YK F+ +C +V
Sbjct: 58 GMHVPEHVAMHHTHDVGPDQCCSSVVQMIHAPPESVWALVRRFDNPKVYKNFIRQCRIVQ 117
Query: 67 GD-LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPE 125
GD L +G +REV V SGLPA +STERLE+LD+E H++ +VGGDHRL+NY S+ T+H
Sbjct: 118 GDGLHVGDLREVMVVSGLPAVSSTERLEILDEERHVISFSVVGGDHRLKNYRSVTTLHAS 177
Query: 126 IIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173
GT+V+ES++VDVP GNT++ET FV ++RCNL+SLA + R
Sbjct: 178 ---DDEGTVVVESYIVDVPPGNTEEETLSFVDTIVRCNLQSLARSTNR 222
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 166 bits (421), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVNGDLGIGS 73
I+ +H+ EP CTS + + I AP +VW L+RRFD P++YK FV RC +++GD +GS
Sbjct: 25 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 84
Query: 74 VREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIID---GR 130
VREV V SGLPA+TSTERLE +DD+ +L +IVGG+HRL+NY S+ +V+ E ++ G+
Sbjct: 85 VREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKNYKSVTSVN-EFLNQDSGK 143
Query: 131 PGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
T+V+ES+ VD+PEGNT+++T FV +++ NL+ L + + D
Sbjct: 144 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 191
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVNGDLGIGS 73
I+ +H+ EP CTS + + I AP +VW L+RRFD P++YK FV RC +++GD +GS
Sbjct: 22 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 81
Query: 74 VREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIID---GR 130
VREV V SGLPA+TSTERLE +DD+ +L ++VGG+HRL+NY S+ +V+ E ++ G+
Sbjct: 82 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 140
Query: 131 PGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
T+V+ES+ VD+PEGNT+++T FV +++ NL+ L + + D
Sbjct: 141 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 188
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 166 bits (419), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVNGDLGIGS 73
I+ +H+ EP CTS + + I AP +VW L+RRFD P++YK FV RC +++GD +GS
Sbjct: 25 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 84
Query: 74 VREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIID---GR 130
VREV V SGLPA+TSTERLE +DD+ +L ++VGG+HRL+NY S+ +V+ E ++ G+
Sbjct: 85 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 143
Query: 131 PGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
T+V+ES+ VD+PEGNT+++T FV +++ NL+ L + + D
Sbjct: 144 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 191
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVNGDLGIGS 73
I+ +H+ EP CTS + + I AP +VW L+RRFD P++YK FV RC +++GD +GS
Sbjct: 10 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 69
Query: 74 VREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIID---GR 130
VREV V SGLPA+TSTERLE +DD+ +L ++VGG+HRL+NY S+ +V+ E ++ G+
Sbjct: 70 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 128
Query: 131 PGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
T+V+ES+ VD+PEGNT+++T FV +++ NL+ L + + D
Sbjct: 129 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 176
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVNGDLGIGS 73
I+ +H+ EP CTS + + I AP +VW L+RRFD P++YK FV RC +++GD +GS
Sbjct: 11 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 70
Query: 74 VREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIID---GR 130
VREV V SGLPA+TSTERLE +DD+ +L ++VGG+HRL+NY S+ +V+ E ++ G+
Sbjct: 71 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 129
Query: 131 PGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
T+V+ES+ VD+PEGNT+++T FV +++ NL+ L + + D
Sbjct: 130 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 177
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 165 bits (418), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 118/168 (70%), Gaps = 5/168 (2%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVNGDLGIGS 73
I+ +H+ EP CTS + + I AP +VW L+RRFD P++YK FV RC +++GD +GS
Sbjct: 11 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 70
Query: 74 VREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIID---GR 130
VREV V SGLPA+TSTERLE +DD+ +L ++VGG+HRL+NY S+ +V+ E ++ G+
Sbjct: 71 VREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 129
Query: 131 PGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
T+V+ES+ VD+PEGNT+++T FV +++ NL+ L + + D
Sbjct: 130 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 177
>pdb|3ZVU|A Chain A, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 193
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 110/163 (67%), Gaps = 2/163 (1%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV--NGDLGIG 72
I H ++ C+S + I AP LVWS+VRRFD+PQ YKPF+ C V N ++ +G
Sbjct: 19 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKPFIKSCSVEQNFEMRVG 78
Query: 73 SVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPG 132
R+V V SGLPA TSTERL++LDDE + G I+GG+HRL NY S+ TVH + R
Sbjct: 79 CTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 138
Query: 133 TLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175
T+V+ES+VVD+PEGN++D+T F +++ NL+ LA V+E MA
Sbjct: 139 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 181
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 117/168 (69%), Gaps = 5/168 (2%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC-VVNGDLGIGS 73
I+ +H+ EP CTS + + I AP +VW L+RRFD P++YK FV RC +++GD +GS
Sbjct: 11 IKTYHQFEPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISGDGDVGS 70
Query: 74 VREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIID---GR 130
VREV V SGLP +TSTERLE +DD+ +L ++VGG+HRL+NY S+ +V+ E ++ G+
Sbjct: 71 VREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVN-EFLNQDSGK 129
Query: 131 PGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
T+V+ES+ VD+PEGNT+++T FV +++ NL+ L + + D
Sbjct: 130 VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMHD 177
>pdb|3K90|A Chain A, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|B Chain B, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|C Chain C, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3K90|D Chain D, The Abscisic Acid Receptor Pyr1 In Complex With Abscisic
Acid
pdb|3QN1|A Chain A, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
Length = 193
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV--NGDLGIG 72
I H ++ C+S + I AP LVWS+VRRFD+PQ YK F+ C V N ++ +G
Sbjct: 19 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVG 78
Query: 73 SVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPG 132
R+V V SGLPA TSTERL++LDDE + G I+GG+HRL NY S+ TVH + R
Sbjct: 79 CTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 138
Query: 133 TLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175
T+V+ES+VVD+PEGN++D+T F +++ NL+ LA V+E MA
Sbjct: 139 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 181
>pdb|3K3K|A Chain A, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
pdb|3K3K|B Chain B, Crystal Structure Of Dimeric Abscisic Acid (Aba) Receptor
Pyrabactin Resistance 1 (Pyr1) With Aba-Bound Closed-Lid
And Aba-Free Open-Lid Subunits
Length = 211
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV--NGDLGIG 72
I H ++ C+S + I AP LVWS+VRRFD+PQ YK F+ C V N ++ +G
Sbjct: 37 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVG 96
Query: 73 SVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPG 132
R+V V SGLPA TSTERL++LDDE + G I+GG+HRL NY S+ TVH + R
Sbjct: 97 CTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 156
Query: 133 TLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175
T+V+ES+VVD+PEGN++D+T F +++ NL+ LA V+E MA
Sbjct: 157 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 199
>pdb|3NJO|A Chain A, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|B Chain B, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
pdb|3NJO|C Chain C, X-Ray Crystal Structure Of The Pyr1-Pyrabactin A Complex
Length = 194
Score = 157 bits (396), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Query: 15 IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV--NGDLGIG 72
I H ++ C+S + I AP LVWS+VRRFD+PQ YK F+ C V N ++ +G
Sbjct: 20 IAEFHTYQLDPGSCSSLHAQRIHAPPELVWSIVRRFDKPQTYKHFIKSCSVEQNFEMRVG 79
Query: 73 SVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPG 132
R+V V SGL A TSTERL++LDDE + G I+GG+HRL NY S+ TVH + R
Sbjct: 80 CTRDVIVISGLSANTSTERLDILDDERRVTGFSIIGGEHRLTNYKSVTTVHRFEKENRIW 139
Query: 133 TLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175
T+V+ES+VVD+PEGN++D+T F +++ NL+ LA V+E MA
Sbjct: 140 TVVLESYVVDMPEGNSEDDTRMFADTVVKLNLQKLATVAEAMA 182
>pdb|3OJI|A Chain A, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
pdb|3OJI|B Chain B, X-Ray Crystal Structure Of The Py13 -Pyrabactin Complex
Length = 189
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 116/182 (63%), Gaps = 17/182 (9%)
Query: 7 YGVMEAQY------IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFV 60
YG+ + ++ IR HH N CTS + + AP H +W VR F P KYK F+
Sbjct: 3 YGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFI 62
Query: 61 SRCV--VNGD----LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLR 114
C VNG+ + +G++REV+V SGLPA+TS E LE+LD+E+ IL +++GG+HRL
Sbjct: 63 KSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLN 122
Query: 115 NYSSIMTVHPEII-----DGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLAD 169
NY S+ +V+ ++ R ++V+ES++VD+P+GNT+++T FV +++ NL++LA
Sbjct: 123 NYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAV 182
Query: 170 VS 171
+S
Sbjct: 183 IS 184
>pdb|4DSB|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
pdb|4DSB|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of I 212121 At 2.70a
Length = 186
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 115/178 (64%), Gaps = 12/178 (6%)
Query: 5 DAYGVMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCV 64
D + +++ IR HH N CTS + + AP H +W VR F P KYK F+ C
Sbjct: 5 DEFSTLDS-IIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCT 63
Query: 65 --VNGD----LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSS 118
VNG+ + +G++REV+V SGLPA+TS E LE+LD+E+ IL +++GG+HRL NY S
Sbjct: 64 IRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRS 123
Query: 119 IMTVHPEII-----DGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVS 171
+ +V+ ++ R ++V+ES++VD+P+GNT+++T FV +++ NL++LA +S
Sbjct: 124 VTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 181
>pdb|3KLX|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|3KLX|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl3
pdb|4DS8|A Chain A, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 209
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 116/182 (63%), Gaps = 17/182 (9%)
Query: 7 YGVMEAQY------IRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFV 60
YG+ + ++ IR HH N CTS + + AP H +W VR F P KYK F+
Sbjct: 23 YGLTKDEFSTLDSIIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFI 82
Query: 61 SRCV--VNGD----LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLR 114
C VNG+ + +G++REV+V SGLPA+TS E LE+LD+E+ IL +++GG+HRL
Sbjct: 83 KSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLN 142
Query: 115 NYSSIMTVHPEII-----DGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLAD 169
NY S+ +V+ ++ R ++V+ES++VD+P+GNT+++T FV +++ NL++LA
Sbjct: 143 NYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAV 202
Query: 170 VS 171
+S
Sbjct: 203 IS 204
>pdb|4DSC|A Chain A, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
pdb|4DSC|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3 With
(+)-Aba In Spacegroup Of H32 At 1.95a
Length = 188
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/178 (40%), Positives = 115/178 (64%), Gaps = 12/178 (6%)
Query: 5 DAYGVMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCV 64
D + +++ IR HH N CTS + + AP H +W VR F P KYK F+ C
Sbjct: 7 DEFSTLDS-IIRTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCT 65
Query: 65 --VNGD----LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSS 118
VNG+ + +G++REV+V SGLPA+TS E LE+LD+E+ IL +++GG+HRL NY S
Sbjct: 66 IRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRVLGGEHRLNNYRS 125
Query: 119 IMTVHPEII-----DGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVS 171
+ +V+ ++ R ++V+ES++VD+P+GNT+++T FV +++ NL++LA +S
Sbjct: 126 VTSVNEFVVLEKDKKKRVYSVVLESYIVDIPQGNTEEDTRMFVDTVVKSNLQNLAVIS 183
>pdb|3KDJ|A Chain A, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
pdb|3NEF|A Chain A, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEF|B Chain B, High-Resolution Pyrabactin-Bound Pyl1 Structure
pdb|3NEG|A Chain A, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
pdb|3NEG|B Chain B, Pyrabactin-Bound Pyl1 Structure In The Open And Close
Forms
Length = 202
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
Query: 12 AQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGD--L 69
+Q I H ++ +C+S L + I AP VWS+VRRFD+PQ YK F+ C V+ D +
Sbjct: 22 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 81
Query: 70 GIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVH---PEI 126
+G R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRLRNY S+ TVH E
Sbjct: 82 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 141
Query: 127 IDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERM 174
+ R T+V+ES+VVDVPEGN++++T F +IR NL+ LA ++E M
Sbjct: 142 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 189
>pdb|3JRS|A Chain A, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|B Chain B, Crystal Structure Of (+)-Aba-Bound Pyl1
pdb|3JRS|C Chain C, Crystal Structure Of (+)-Aba-Bound Pyl1
Length = 208
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
Query: 12 AQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGD--L 69
+Q I H ++ +C+S L + I AP VWS+VRRFD+PQ YK F+ C V+ D +
Sbjct: 38 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 97
Query: 70 GIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVH---PEI 126
+G R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRLRNY S+ TVH E
Sbjct: 98 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 157
Query: 127 IDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERM 174
+ R T+V+ES+VVDVPEGN++++T F +IR NL+ LA ++E M
Sbjct: 158 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 205
>pdb|3KAY|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3KAY|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl1
pdb|3NMN|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|C Chain C, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 178
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
Query: 12 AQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGD--L 69
+Q I H ++ +C+S L + I AP VWS+VRRFD+PQ YK F+ C V+ D +
Sbjct: 8 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 67
Query: 70 GIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVH---PEI 126
+G R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRLRNY S+ TVH E
Sbjct: 68 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 127
Query: 127 IDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERM 174
+ R T+V+ES+VVDVPEGN++++T F +IR NL+ LA ++E M
Sbjct: 128 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 175
>pdb|3JRQ|B Chain B, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 186
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 112/168 (66%), Gaps = 5/168 (2%)
Query: 12 AQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGD--L 69
+Q I H ++ +C+S L + I AP VWS+VRRFD+PQ YK F+ C V+ D +
Sbjct: 17 SQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEM 76
Query: 70 GIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVH---PEI 126
+G R+VNV SGLPA TS ERL+LLDD+ + G I GG+HRLRNY S+ TVH E
Sbjct: 77 RVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEE 136
Query: 127 IDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERM 174
+ R T+V+ES+VVDVPEGN++++T F +IR NL+ LA ++E M
Sbjct: 137 EEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAM 184
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 58 PFVSRCVVNGDL----GIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGD--- 110
PF+ +C+ N +L G G+VR V T +L E +GI G D
Sbjct: 122 PFLGKCIENYELVDEGGSGTVRHV--------TFDISEGDLRYLEGQSIGIIPPGEDKNG 173
Query: 111 --HRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNL 164
H+LR YS T H ++ D + +L + PE ET Y V + CNL
Sbjct: 174 KPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESG---ETVYGVCSTYLCNL 226
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 65 VNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMT 121
V GD G G+VR + + G P TT T R + ++ E ++ GD L SI T
Sbjct: 44 VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIET 100
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 66 NGDLG-IGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHP 124
GD G +GS+ N A + ER+E ++ +++++ +++ GD S ++T+
Sbjct: 58 EGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQV 117
Query: 125 EIIDGRPGTLV 135
G PG++V
Sbjct: 118 TPKPGGPGSIV 128
>pdb|3F08|A Chain A, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153.
pdb|3F08|B Chain B, Crystal Structure Of The Putative Uncharacterized Protein
Q6hg14 From Bacilllus Thuringiensis. Northeast
Structural Genomics Consortium Target Bur153
Length = 146
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 43 VWSLVRRFDQPQKYKPFV-SRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHI 101
VW L+ F+ + P++ S + G G VR + G T ERLE+ +D+E
Sbjct: 17 VWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---ETIIERLEVFNDKERY 69
Query: 102 LGIKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIR 161
I + NY S + V T ++E P + +E V +
Sbjct: 70 YTYSIXNAPFPVTNYLSTIQVKE---GTESNTSLVEWSGTFTPVAVSDEEAINLVHGIYS 126
Query: 162 CNLKSL 167
LK+L
Sbjct: 127 DGLKAL 132
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 69 LGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSI-------MT 121
L + +V+ V ++S T RL+ L + ++GG L N SI +
Sbjct: 134 LIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVI 193
Query: 122 VHPEIIDGRPGTLVIESFVVDVPEGNTKDETC 153
+ PE+ G GT + +P N K E C
Sbjct: 194 LPPEVAIGALGT------IKALPRFNEKGEVC 219
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 55 KYKPFVSRCV-VNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHRL 113
K P + V + GD G G+++ + + G P TT T R++ ++ E ++ GD L
Sbjct: 33 KAAPGAYKSVEIKGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALTFDYSVIDGDILL 92
Query: 114 RNYSSI 119
SI
Sbjct: 93 GFIESI 98
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 82 GLPATTSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPGTL-----VI 136
P + L L D E + G+ I N +M +HP ++GR GTL +
Sbjct: 15 AYPGEKGKKFLSLEKDLERLKGMGI--------NTVWLMPIHPTGVEGRKGTLGSPYAIR 66
Query: 137 ESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQD 178
+ + +D+ G TK + FV+ N+ L D+ A D
Sbjct: 67 DYYEIDLLIG-TKGDFKKFVKRAHELNMYVLMDMVLNHAAVD 107
>pdb|3CNW|A Chain A, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196.
pdb|3CNW|B Chain B, Three-Dimensional Structure Of The Protein Xoxi (Q81ay6)
From Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr196
Length = 148
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 43 VWSLVRRFDQPQKYKPFV-SRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHI 101
VW L+ F+ + P++ S + G G VR + G T ERLE+ +D+E
Sbjct: 19 VWQLIGGFNSLPDWLPYIPSSKLTEG----GRVRHLANPDG---DTIIERLEVFNDKERY 71
Query: 102 LGIKIVGGDHRLRNYSSIMTV 122
I + NY S + V
Sbjct: 72 YTYSIXNAPFPVTNYLSTIQV 92
>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms
Length = 316
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 105 KIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNL 164
K G +R YS T + + DGR G+L + V PE +D + V + CN
Sbjct: 82 KKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNS 141
Query: 165 K 165
K
Sbjct: 142 K 142
>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
Reductase From Maize Root At 1.05 Angstroms
Length = 311
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 105 KIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNL 164
K G +R YS T + + DGR G+L + V PE +D + V + CN
Sbjct: 77 KKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNS 136
Query: 165 K 165
K
Sbjct: 137 K 137
>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms - Test Set Withheld
Length = 311
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 105 KIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNL 164
K G +R YS T + + DGR G+L + V PE +D + V + CN
Sbjct: 77 KKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNS 136
Query: 165 K 165
K
Sbjct: 137 K 137
>pdb|3V7P|A Chain A, Crystal Structure Of Amidohydrolase Nis_0429 (Target
Efi-500396) From Nitratiruptor Sp. Sb155-2
Length = 427
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 9 VMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRR-FDQPQKYKPFVS 61
VM A ++ R H+ + EN+ A V I +P + + L +R D +KY VS
Sbjct: 152 VMYASFLERFHQSKKHENERFKAAVA-IHSPYSVHYILAKRALDIAKKYGSLVS 204
>pdb|2KFF|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestnpftak
pdb|2KFG|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 In Complex With
Fnyestdpftak
pdb|2KFH|A Chain A, Structure Of The C-Terminal Domain Of Ehd1 With
Fnyestgpftak
pdb|2KSP|A Chain A, Mechanism For The Selective Interaction Of C-Terminal
Eh-Dom Proteins With Specific Npf-Containing Partners
Length = 105
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 51 DQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPAT--------TSTERLELLDDEE--- 99
D+P + F + VNG + + ++ VKS LP T ++ LLDDEE
Sbjct: 15 DKPTYDEIFYTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFAL 74
Query: 100 --HILGIKIVG 108
H++ +K+ G
Sbjct: 75 ANHLIKVKLEG 85
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 38 APVHLVWSLVRRFDQ-PQKYK-PFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELL 95
AP L +L + D QK P S +V G+ G+G+++++ G + ++++ +
Sbjct: 14 APAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAI 73
Query: 96 DDEEHILGIKIVGG 109
D+ IVGG
Sbjct: 74 DEANLGYDYSIVGG 87
>pdb|3KN3|A Chain A, Crystal Structure Of Lysr Substrate Binding Domain
(25-263) Of Putative Periplasmic Protein From Wolinella
Succinogenes
pdb|3KN3|B Chain B, Crystal Structure Of Lysr Substrate Binding Domain
(25-263) Of Putative Periplasmic Protein From Wolinella
Succinogenes
pdb|3KN3|C Chain C, Crystal Structure Of Lysr Substrate Binding Domain
(25-263) Of Putative Periplasmic Protein From Wolinella
Succinogenes
Length = 242
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 68 DLGIGSVREVNVKSGLPATTSTERLELLDDEEHILG----IKIVGGDHRLRNYSSIMTVH 123
+ G G + +N+ T T+R + E + G + ++ GD+ L+N+ SI V+
Sbjct: 150 EAGQGXLATINIAEEQKGLTLTDRGTFIKYESNHKGKPPXVIVLEGDNTLKNFYSIXAVN 209
Query: 124 PE 125
P+
Sbjct: 210 PK 211
>pdb|2JQ6|A Chain A, Structure Of Eh-Domain Of Ehd1
Length = 139
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 51 DQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPAT--------TSTERLELLDDEE--- 99
D+P + F + VNG + + ++ VKS LP T ++ LLDDEE
Sbjct: 49 DKPTYDEIFYTLSPVNGKITGANAKKEMVKSKLPNTVLGKIWKLADVDKDGLLDDEEFAL 108
Query: 100 --HILGIKIVG 108
H++ +K+ G
Sbjct: 109 ANHLIKVKLEG 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,792,261
Number of Sequences: 62578
Number of extensions: 232007
Number of successful extensions: 512
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 60
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)