Query 043944
Match_columns 186
No_of_seqs 162 out of 1145
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 09:50:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07816 Bet_v1-like Ligand-bin 99.9 5.2E-24 1.1E-28 163.4 19.6 115 27-146 2-122 (148)
2 cd07821 PYR_PYL_RCAR_like Pyra 99.8 1.1E-18 2.4E-23 129.4 18.0 138 27-172 2-140 (140)
3 PF10604 Polyketide_cyc2: Poly 99.8 3.6E-17 7.8E-22 121.2 20.5 135 27-172 3-139 (139)
4 PF00407 Bet_v_1: Pathogenesis 99.8 1.5E-17 3.2E-22 128.3 16.9 113 26-143 4-122 (151)
5 cd08866 SRPBCC_11 Ligand-bindi 99.8 1E-16 2.2E-21 120.6 17.3 135 29-173 2-144 (144)
6 cd08862 SRPBCC_Smu440-like Lig 99.7 2.5E-15 5.3E-20 111.7 17.7 136 26-173 1-138 (138)
7 cd08865 SRPBCC_10 Ligand-bindi 99.7 3.5E-15 7.5E-20 110.3 16.5 134 29-173 2-140 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.7 3.8E-15 8.2E-20 111.7 15.5 137 29-173 2-142 (142)
9 cd07819 SRPBCC_2 Ligand-bindin 99.6 4.1E-14 9E-19 105.1 18.0 135 26-170 2-139 (140)
10 cd07822 SRPBCC_4 Ligand-bindin 99.6 6.6E-14 1.4E-18 103.7 17.2 138 28-172 2-141 (141)
11 cd07818 SRPBCC_1 Ligand-bindin 99.6 1.3E-13 2.8E-18 104.4 17.4 137 27-173 3-150 (150)
12 cd07817 SRPBCC_8 Ligand-bindin 99.6 1.1E-13 2.3E-18 102.9 15.7 133 28-172 2-138 (139)
13 cd07813 COQ10p_like Coenzyme Q 99.6 4.2E-14 9.2E-19 106.0 13.6 134 29-173 2-137 (138)
14 cd08860 TcmN_ARO-CYC_like N-te 99.5 6.8E-13 1.5E-17 101.6 16.4 142 27-175 2-146 (146)
15 cd07825 SRPBCC_7 Ligand-bindin 99.5 1.7E-12 3.6E-17 97.5 13.9 137 28-172 2-144 (144)
16 cd07814 SRPBCC_CalC_Aha1-like 99.5 3E-12 6.5E-17 94.9 14.5 136 28-173 2-139 (139)
17 cd05018 CoxG Carbon monoxide d 99.4 6.1E-12 1.3E-16 93.8 14.3 138 26-172 1-144 (144)
18 cd07824 SRPBCC_6 Ligand-bindin 99.4 1.4E-11 3E-16 93.5 15.5 127 35-170 8-145 (146)
19 cd07812 SRPBCC START/RHO_alpha 99.4 3.2E-11 6.8E-16 86.9 16.7 131 34-170 5-140 (141)
20 cd07820 SRPBCC_3 Ligand-bindin 99.3 2.1E-10 4.6E-15 86.0 14.9 109 29-147 2-115 (137)
21 PF03364 Polyketide_cyc: Polyk 99.3 1.4E-10 3.1E-15 85.6 13.0 126 36-168 1-130 (130)
22 cd07823 SRPBCC_5 Ligand-bindin 99.3 1.4E-10 3E-15 88.0 13.0 137 29-173 2-146 (146)
23 PRK10724 hypothetical protein; 99.2 3.6E-10 7.7E-15 87.8 14.4 137 27-175 16-155 (158)
24 cd08893 SRPBCC_CalC_Aha1-like_ 99.1 4.1E-09 8.9E-14 77.9 13.1 131 28-173 2-136 (136)
25 cd08899 SRPBCC_CalC_Aha1-like_ 99.0 5.4E-09 1.2E-13 80.5 12.6 130 25-175 10-139 (157)
26 cd08898 SRPBCC_CalC_Aha1-like_ 99.0 1.1E-08 2.5E-13 76.4 13.6 136 27-173 2-145 (145)
27 COG5637 Predicted integral mem 98.9 2.9E-08 6.3E-13 77.8 12.9 153 9-177 57-214 (217)
28 cd08894 SRPBCC_CalC_Aha1-like_ 98.9 8.6E-08 1.9E-12 72.1 13.1 133 31-173 3-139 (139)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.9 1.2E-07 2.7E-12 71.5 13.9 132 31-173 3-143 (143)
30 cd08891 SRPBCC_CalC Ligand-bin 98.8 2.3E-07 5E-12 70.5 14.2 135 28-173 2-149 (149)
31 cd08897 SRPBCC_CalC_Aha1-like_ 98.8 1.1E-07 2.3E-12 71.1 11.8 123 32-173 4-133 (133)
32 cd08896 SRPBCC_CalC_Aha1-like_ 98.8 1.9E-07 4.2E-12 70.7 13.2 133 31-172 3-145 (146)
33 cd08895 SRPBCC_CalC_Aha1-like_ 98.7 8.6E-07 1.9E-11 67.1 14.8 130 31-172 3-145 (146)
34 cd07826 SRPBCC_CalC_Aha1-like_ 98.7 7.4E-07 1.6E-11 67.4 14.2 133 31-172 3-141 (142)
35 COG3427 Carbon monoxide dehydr 98.7 7.3E-07 1.6E-11 68.1 13.0 135 27-171 2-143 (146)
36 cd08876 START_1 Uncharacterize 98.6 8E-06 1.7E-10 64.6 18.4 139 26-171 41-194 (195)
37 cd08901 SRPBCC_CalC_Aha1-like_ 98.6 1.1E-06 2.3E-11 65.9 11.6 130 28-174 2-133 (136)
38 cd08892 SRPBCC_Aha1 Putative h 98.6 2.1E-06 4.6E-11 63.6 12.8 121 31-172 3-125 (126)
39 COG2867 Oligoketide cyclase/li 98.5 1E-06 2.2E-11 67.0 9.9 135 28-176 4-140 (146)
40 PF08327 AHSA1: Activator of H 98.5 5.5E-06 1.2E-10 60.1 12.9 122 37-172 1-124 (124)
41 COG3832 Uncharacterized conser 98.4 1.2E-05 2.7E-10 61.6 12.9 100 25-129 7-108 (149)
42 PF06240 COXG: Carbon monoxide 98.4 1.2E-05 2.7E-10 60.7 12.6 129 35-171 4-139 (140)
43 PTZ00220 Activator of HSP-90 A 97.8 0.00032 6.9E-09 52.5 10.0 91 36-136 1-92 (132)
44 COG4276 Uncharacterized conser 97.6 0.0064 1.4E-07 45.9 13.9 105 35-146 9-120 (153)
45 cd08905 START_STARD1-like Chol 97.5 0.014 3E-07 47.1 16.1 137 34-173 55-208 (209)
46 cd08874 START_STARD9-like C-te 97.0 0.064 1.4E-06 43.3 15.4 133 35-171 52-203 (205)
47 cd08906 START_STARD3-like Chol 97.0 0.13 2.9E-06 41.5 17.4 135 35-173 56-208 (209)
48 cd08877 START_2 Uncharacterize 97.0 0.035 7.6E-07 44.7 13.2 146 23-173 41-214 (215)
49 PF08982 DUF1857: Domain of un 96.9 0.041 8.9E-07 42.3 12.5 60 39-104 19-79 (149)
50 KOG3177 Oligoketide cyclase/li 96.6 0.033 7.3E-07 44.9 10.5 139 35-182 75-219 (227)
51 cd08868 START_STARD1_3_like Ch 96.6 0.26 5.6E-06 39.4 16.4 149 22-174 43-208 (208)
52 PF10698 DUF2505: Protein of u 96.4 0.29 6.4E-06 37.6 14.9 132 34-172 5-156 (159)
53 cd08871 START_STARD10-like Lip 96.1 0.55 1.2E-05 37.9 18.0 137 35-175 54-204 (222)
54 cd08873 START_STARD14_15-like 96.0 0.57 1.2E-05 38.7 14.9 100 35-136 84-200 (235)
55 cd08911 START_STARD7-like Lipi 96.0 0.62 1.3E-05 37.4 16.9 135 35-173 53-206 (207)
56 cd08903 START_STARD5-like Lipi 95.8 0.76 1.6E-05 36.9 16.3 136 34-173 52-207 (208)
57 cd08913 START_STARD14-like Lip 95.8 0.25 5.5E-06 40.9 11.9 31 35-65 88-118 (240)
58 cd08867 START_STARD4_5_6-like 95.2 1.2 2.6E-05 35.5 16.3 134 35-171 53-205 (206)
59 cd00177 START Lipid-binding ST 95.2 1 2.2E-05 34.4 17.7 37 27-65 40-76 (193)
60 cd08869 START_RhoGAP C-termina 95.1 1.3 2.8E-05 35.2 15.0 129 35-171 51-194 (197)
61 cd08863 SRPBCC_DUF1857 DUF1857 94.9 1.3 2.8E-05 33.8 15.6 63 39-108 18-82 (141)
62 cd08870 START_STARD2_7-like Li 94.4 2.1 4.6E-05 34.2 18.3 135 35-172 57-207 (209)
63 smart00234 START in StAR and p 94.4 1.9 4.2E-05 33.8 15.7 136 34-174 51-203 (206)
64 cd08908 START_STARD12-like C-t 94.4 2.2 4.8E-05 34.4 15.0 135 28-172 54-202 (204)
65 cd08914 START_STARD15-like Lip 93.9 2.7 5.8E-05 34.8 13.0 37 27-65 79-115 (236)
66 cd08910 START_STARD2-like Lipi 92.5 4.7 0.0001 32.3 13.6 132 35-172 56-205 (207)
67 cd08904 START_STARD6-like Lipi 92.3 5.1 0.00011 32.3 14.7 142 25-171 44-203 (204)
68 cd08902 START_STARD4-like Lipi 85.2 18 0.0004 29.2 14.1 144 23-171 43-201 (202)
69 PF01852 START: START domain; 70.0 49 0.0011 25.6 17.3 133 34-175 52-204 (206)
70 PF11687 DUF3284: Domain of un 66.9 47 0.001 24.2 12.5 94 33-142 4-101 (120)
71 cd08909 START_STARD13-like C-t 62.6 81 0.0018 25.4 15.7 135 27-172 53-203 (205)
72 COG4891 Uncharacterized conser 61.1 56 0.0012 23.1 6.6 81 87-173 10-92 (93)
73 KOG2936 Uncharacterized conser 51.1 1.2E+02 0.0026 26.1 8.2 91 31-134 176-268 (301)
74 PF05121 GvpK: Gas vesicle pro 25.5 29 0.00063 24.3 0.5 17 9-25 28-44 (88)
No 1
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=99.93 E-value=5.2e-24 Score=163.40 Aligned_cols=115 Identities=17% Similarity=0.314 Sum_probs=100.1
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCC-C-CccCccceEEEE-ccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQ-P-QKYKPFVSRCVV-NGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILG 103 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~-~-~~W~p~v~~~~~-~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~ 103 (186)
+++.++ +|+||+++||++++||.+ + +.|.|.|.+|++ +|++++|++|.+++.+|.+...++|||+.+|+++|+++
T Consensus 2 ~~~~e~--~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~ 79 (148)
T cd07816 2 TLEHEV--ELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79 (148)
T ss_pred cEEEEE--EecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence 566777 999999999999999994 5 679999999997 78889999999999866455689999999999999999
Q ss_pred EEEEcCCc---cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCC
Q 043944 104 IKIVGGDH---RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEG 146 (186)
Q Consensus 104 Y~i~~g~~---p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g 146 (186)
|++++|++ ++++|.++++|.|.++++ |++.|+..|++..+
T Consensus 80 y~vveg~~~~~~~~~y~~t~~v~~~~~~~---t~v~Wt~~ye~~~~ 122 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEIKFVPKGDGG---CVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEecccccCceEEEEEEEEEEECCCCC---EEEEEEEEEEECCC
Confidence 99999987 599999999999997444 68899999986433
No 2
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.83 E-value=1.1e-18 Score=129.36 Aligned_cols=138 Identities=35% Similarity=0.543 Sum_probs=115.4
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEc-cCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVN-GDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIK 105 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~-G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~ 105 (186)
+++.++ +|+||+++||++++|+.+++.|+|.+.++++. +..++|+.+.+.+..| ..++++++.+|+.++++.|+
T Consensus 2 ~i~~~~--~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSV--TIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEE--EECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence 456666 99999999999999999999999999999874 3335899999888766 57889999999865899999
Q ss_pred EEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 106 IVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 106 i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
+.+++.++.++.++++|.|.++++| .+.|+..|+++.....+.+...+...+..+|++|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~t---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 77 IVEGPLPVKNYVATIRVTPEGDGGT---RVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred ecCCCCCcccceEEEEEEECCCCcc---EEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9988778888999999999985454 666777787644455678889999999999999999875
No 3
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.80 E-value=3.6e-17 Score=121.22 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=107.7
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKI 106 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i 106 (186)
+++.++ .|+|||++||++++|+.++++|.|.+.++++.+.+++|..+.+... |. ..++++++.++++++.+.|++
T Consensus 3 ~~~~~~--~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-g~--~~~~~~i~~~~~~~~~~~~~~ 77 (139)
T PF10604_consen 3 KVEVSI--EVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVA-GR--GTVREEITEYDPEPRRITWRF 77 (139)
T ss_dssp EEEEEE--EESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEEC-SC--SEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEE--EECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEec-cc--cceeEEEEEecCCCcEEEEEE
Confidence 455555 9999999999999999999999999999987543335666777764 42 479999999998779999999
Q ss_pred EcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeC-CCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 107 VGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDV-PEGNT-KDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 107 ~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~-p~g~~-~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
. ..++.++.++++|.|.+ +|| .+.|+..+++ +.+.. ...+...+...++..|++|++.+|
T Consensus 78 ~--~~~~~~~~~~~~~~~~~-~gt---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 78 V--PSGFTNGTGRWRFEPVG-DGT---RVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp E--SSSSCEEEEEEEEEEET-TTE---EEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E--ecceeEEEEEEEEEEcC-CCE---EEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 6 55677889999999998 565 5667777773 33443 566888999999999999999987
No 4
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=99.78 E-value=1.5e-17 Score=128.32 Aligned_cols=113 Identities=19% Similarity=0.346 Sum_probs=93.8
Q ss_pred ceEEEEEEeEecCCHHHHHHHHhcCCC-CCccCc-cceEEEE-ccCCCCC-eEEEEEecCCCCcceeEEEEEEEecCCce
Q 043944 26 NQCTSALVKHIRAPVHLVWSLVRRFDQ-PQKYKP-FVSRCVV-NGDLGIG-SVREVNVKSGLPATTSTERLELLDDEEHI 101 (186)
Q Consensus 26 ~~v~~sv~~~I~Ap~~~VW~vl~Df~~-~~~W~p-~v~~~~~-~G~~~vG-~vR~~~~~~g~p~~~~~Erl~~~D~~~~~ 101 (186)
.+++.++ .+++||+++|+++....+ +|+-.| .|+++++ +|++++| ++|.+++..+.|...++||++.+|+++++
T Consensus 4 ~~~~~E~--~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~ 81 (151)
T PF00407_consen 4 GKLEVEV--EVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKT 81 (151)
T ss_dssp EEEEEEE--EESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTE
T ss_pred EEEEEEE--EecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcE
Confidence 4566666 899999999999997444 377777 5688887 8998877 99999998777778899999999999999
Q ss_pred EEEEEEcCCc--cceeEEEEEEEEeccCCCCCeEEEEEEEEEeC
Q 043944 102 LGIKIVGGDH--RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDV 143 (186)
Q Consensus 102 ~~Y~i~~g~~--p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~ 143 (186)
++|++++|++ .+..|..++++.|.+++| |++.|+..|++
T Consensus 82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g~---~v~k~t~~Ye~ 122 (151)
T PF00407_consen 82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDGG---CVVKWTIEYEK 122 (151)
T ss_dssp EEEEEEEETTGTTTEEEEEEEEEEEETTSC---EEEEEEEEEEE
T ss_pred EEEEEEeccccccEEEEEEEEEecCCCCCc---eEEEEEEEEEe
Confidence 9999999985 578899999999888555 68899999985
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.76 E-value=1e-16 Score=120.59 Aligned_cols=135 Identities=14% Similarity=0.188 Sum_probs=100.6
Q ss_pred EEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCe-------EEEEEecCCCCcceeEEEEEEEecCCc
Q 043944 29 TSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGS-------VREVNVKSGLPATTSTERLELLDDEEH 100 (186)
Q Consensus 29 ~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~-------vR~~~~~~g~p~~~~~Erl~~~D~~~~ 100 (186)
+.++ .|+|||++||++++|++++++|+|.+.+|++ ++.+ .+. .+.+.. ..+ ..+..++.+.++.++
T Consensus 2 ~~~~--~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~~~~~ 75 (144)
T cd08866 2 VARV--RVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFF--KFE-ARVVLELREREEFPR 75 (144)
T ss_pred eEEE--EECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEee--eee-EEEEEEEEEecCCCc
Confidence 4555 8999999999999999999999999999986 4322 121 111111 011 244556677765568
Q ss_pred eEEEEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 101 ILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 101 ~~~Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
+++|++++|+ +.++.++|+|.|.+++|. |.+.|...+++..++....+..+++..+...|++|++++|+
T Consensus 76 ~i~~~~~~g~--~~~~~g~w~~~~~~~~~~--t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 76 ELDFEMVEGD--FKRFEGSWRLEPLADGGG--TLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred eEEEEEcCCc--hhceEEEEEEEECCCCCe--EEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999875 578999999999985233 56777777886555666788889999999999999999884
No 6
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.70 E-value=2.5e-15 Score=111.68 Aligned_cols=136 Identities=17% Similarity=0.089 Sum_probs=103.1
Q ss_pred ceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCC-CCCeEEEEEecCCCCcceeEEEEEEEecCCceEEE
Q 043944 26 NQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDL-GIGSVREVNVKSGLPATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 26 ~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~-~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y 104 (186)
++++.++ .|+||+++||++++|+.++++|+|.+.++++.++. ++|+...++...+ ..+..++.++++. ++++|
T Consensus 1 ~~~~~~~--~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~-~~~~~ 74 (138)
T cd08862 1 MKFEATI--VIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPG-HSFTW 74 (138)
T ss_pred CEEEEEE--EEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCC-CEEEE
Confidence 3567777 99999999999999999999999999999885444 6788766765433 5678889999975 67999
Q ss_pred EEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 105 KIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVP-EGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 105 ~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p-~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
+.... ...+..+++|.+.++++| .+.+.+.+..| ..+....+...+...++..|++||+.+|.
T Consensus 75 ~~~~~---~~~~~~~~~~~~~~~~~t---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 75 TGPAP---GISAVHRHEFEAKPDGGV---RVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred EecCC---CEEEEEEEEEEEcCCCcE---EEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 86542 345567999999874554 45556666533 12234668888889999999999999873
No 7
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.69 E-value=3.5e-15 Score=110.32 Aligned_cols=134 Identities=17% Similarity=0.187 Sum_probs=99.8
Q ss_pred EEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEc--cCCCCCeEEEEEec-CCCCcceeEEEEEEEecCCceEEEE
Q 043944 29 TSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVN--GDLGIGSVREVNVK-SGLPATTSTERLELLDDEEHILGIK 105 (186)
Q Consensus 29 ~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~--G~~~vG~vR~~~~~-~g~p~~~~~Erl~~~D~~~~~~~Y~ 105 (186)
+.++ .|+||+++||++++|+.++++|+|.+.+++.. +..++|+...+... .|.+ ..++++++.+++ ++.+.|.
T Consensus 2 ~~~~--~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~-~~~~~~v~~~~p-~~~~~~~ 77 (140)
T cd08865 2 EESI--VIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRR-IELTYEITEYEP-GRRVVFR 77 (140)
T ss_pred ceEE--EEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCce-EEEEEEEEEecC-CcEEEEE
Confidence 3455 89999999999999999999999999888863 34567888776553 2321 457889999987 4889999
Q ss_pred EEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 106 IVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVP--EGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 106 i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p--~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
...++ + .+.+++++.|.+ +|| .+.|+..++.+ .......+...+...++..|++||+++|.
T Consensus 78 ~~~~~--~-~~~~~~~~~~~~-~~t---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 78 GSSGP--F-PYEDTYTFEPVG-GGT---RVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred ecCCC--c-ceEEEEEEEEcC-Cce---EEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 87653 3 468899999987 565 55555566531 12233557777888888999999999874
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.67 E-value=3.8e-15 Score=111.74 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=97.9
Q ss_pred EEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEE-EccCCCCCeEEEEEec-CCCCcceeEEEEEEEecCCceEEEEE
Q 043944 29 TSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCV-VNGDLGIGSVREVNVK-SGLPATTSTERLELLDDEEHILGIKI 106 (186)
Q Consensus 29 ~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~-~~G~~~vG~vR~~~~~-~g~p~~~~~Erl~~~D~~~~~~~Y~i 106 (186)
+.++ +|+||+++||++++|+.++++|+|. .+++ +++.+....++.+... .|. ..-.+....+|++.+++.|..
T Consensus 2 ~~s~--~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 2 EHSV--TVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGS--VHTWTSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred eEEE--EEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCc--EEEEEEEEEEcCCCCEEEEEE
Confidence 4566 9999999999999999999999997 4444 4432211134434443 332 222234556788678999999
Q ss_pred EcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 107 VGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDV--PEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 107 ~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~--p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
.++..++..+.++|+|.|.++++| .+.+...+++ +..+....+.+.+...+...|++||+++|+
T Consensus 77 ~~~~~~~~~~~g~w~~~~~~~~~t---~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 77 EEPPPPVASMSGEWRFEPLGGGGT---RVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred eeCCCChhhheeEEEEEECCCCcE---EEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 876556788999999999985554 5666566654 223556778888888899999999999985
No 9
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.64 E-value=4.1e-14 Score=105.13 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=90.4
Q ss_pred ceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-cc-CCCCCeEEEEEecCCCCcceeEEEEEEEec-CCceE
Q 043944 26 NQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NG-DLGIGSVREVNVKSGLPATTSTERLELLDD-EEHIL 102 (186)
Q Consensus 26 ~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G-~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~-~~~~~ 102 (186)
.+++.++ .|+|||++||++|.|+.++++|+|.+.+|++ ++ +++.+....+.+..+ ....+.+..++. ..+.+
T Consensus 2 ~~v~~s~--~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i 76 (140)
T cd07819 2 IKVSREF--EIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY---GIKDTYALEYTWDGAGSV 76 (140)
T ss_pred ceEEEEE--EEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeee---eEEEEEEEEEEEcCCCcE
Confidence 4678888 9999999999999999999999999999987 43 332233333444322 122222333332 25779
Q ss_pred EEEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043944 103 GIKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADV 170 (186)
Q Consensus 103 ~Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~ 170 (186)
+|+..++. +...+.++++|.|.+ +|| .+.|...+++...+....+..+........+++|++.
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~-~~t---~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 77 SWTLVEGE-GNRSQEGSYTLTPKG-DGT---RVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEEeccc-ceeEEEEEEEEEECC-CCE---EEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 99998865 567788999999998 465 5555556664223334455555666666667777664
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=6.6e-14 Score=103.67 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=93.4
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCC-CCcceeEEEEEEEecCCceEEEEE
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSG-LPATTSTERLELLDDEEHILGIKI 106 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g-~p~~~~~Erl~~~D~~~~~~~Y~i 106 (186)
++.++ .|+||+++||++++|+.++++|+|.+..++... ..+|....+.+..+ .....+.++++++|+ ++++.|+.
T Consensus 2 v~~~~--~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~-~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~ 77 (141)
T cd07822 2 ISTEI--EINAPPEKVWEVLTDFPSYPEWNPFVRSATGLS-LALGARLRFVVKLPGGPPRSFKPRVTEVEP-PRRLAWRG 77 (141)
T ss_pred eEEEE--EecCCHHHHHHHHhccccccccChhheeEeccc-cCCCCEEEEEEeCCCCCcEEEEEEEEEEcC-CCEeEEEe
Confidence 45666 999999999999999999999999887665421 45777776665422 122568888999998 47999998
Q ss_pred EcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 107 VGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDV-PEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 107 ~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~-p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
..++.+......+++|.|.++++| .+.+...+.. ........+...++..++..++.|++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~T---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 78 GLPFPGLLDGEHSFELEPLGDGGT---RFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred cCCCCcEeeEEEEEEEEEcCCCcE---EEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 877654445677899999854665 3444444431 11122233455555555666666666654
No 11
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.3e-13 Score=104.42 Aligned_cols=137 Identities=13% Similarity=0.093 Sum_probs=98.7
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEE---EE---ccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCc
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRC---VV---NGDLGIGSVREVNVKSGLPATTSTERLELLDDEEH 100 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~---~~---~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~ 100 (186)
+++.++ .|+||+++||+++.|+.++++|+|.+..+ .. .+..++|+...+....+. .....+++.+++ ++
T Consensus 3 ~~~~s~--~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~~ 77 (150)
T cd07818 3 RVERSI--VINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-NE 77 (150)
T ss_pred EEEEEE--EEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-Cc
Confidence 456666 99999999999999999999999976543 21 234567887767654311 244567888887 57
Q ss_pred eEEEEEEcCCccc-eeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 101 ILGIKIVGGDHRL-RNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEG----NTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 101 ~~~Y~i~~g~~p~-~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g----~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
++.|++..+. ++ .+..++++|.|.+ +|| .+.++..++.+.. .....+...++..+..+|++||+++|+
T Consensus 78 ~i~~~~~~~~-~~~~~~~~~~~~~~~~-~gT---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 78 RIEYELRFIK-PFEATNDVEFTLEPVG-GGT---KVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEEEEEecC-CccccceEEEEEEEcC-Cce---EEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 8999998532 23 3678999999996 675 5556667764322 223556777888888899999999985
No 12
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.59 E-value=1.1e-13 Score=102.90 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=95.8
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEE
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIV 107 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~ 107 (186)
++.++ .|+||+++||+++.|+.++++|+|.+.++++.+. .+....+....|.. ..+..+++.+++. +.+.|...
T Consensus 2 v~~~i--~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~g~~-~~~~~~v~~~~~~-~~i~~~~~ 75 (139)
T cd07817 2 VEKSI--TVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TRSHWKAKGPAGLS-VEWDAEITEQVPN-ERIAWRSV 75 (139)
T ss_pred eeEEE--EeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--CceEEEEecCCCCc-EEEEEEEeccCCC-CEEEEEEC
Confidence 45666 9999999999999999999999999999987422 12223344433432 4566677777774 57999987
Q ss_pred cCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 108 GGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNT----KDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 108 ~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~----~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
.+.+ .+.+++++.|.++++| .+.++..++++.... ...+..+++..++..|++||+.+|
T Consensus 76 ~~~~---~~~~~~~f~~~~~~~T---~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 76 EGAD---PNAGSVRFRPAPGRGT---RVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCCC---CcceEEEEEECCCCCe---EEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 7543 5678999999874454 555566677543332 355677888888999999999987
No 13
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.59 E-value=4.2e-14 Score=106.01 Aligned_cols=134 Identities=11% Similarity=0.150 Sum_probs=97.7
Q ss_pred EEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCeEEEEEec-CCCCcceeEEEEEEEecCCceEEEEE
Q 043944 29 TSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGSVREVNVK-SGLPATTSTERLELLDDEEHILGIKI 106 (186)
Q Consensus 29 ~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~vR~~~~~-~g~p~~~~~Erl~~~D~~~~~~~Y~i 106 (186)
+.++ .|+||+++||+++.|++++++|+|.+.++++ ++.+ .+....+.+. .+. ...+..++. +++ ++++.+..
T Consensus 2 ~~s~--~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 2 SKSR--LVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAELTVGFGGI-RESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred eEEE--EcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEEEEeeccc-cEEEEEEEE-ecC-CCEEEEEe
Confidence 4566 9999999999999999999999999999987 4332 2333334433 221 123445444 666 56899998
Q ss_pred EcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 107 VGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 107 ~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
.+| +++.+.++|++.|.++++ |.+.+...++++..+....+..++....+..|+++++++++
T Consensus 76 ~~g--~~~~~~g~w~~~p~~~~~---T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 76 VDG--PFKHLEGEWRFKPLGENA---CKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred cCC--ChhhceeEEEEEECCCCC---EEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887 467789999999998555 56666667775434445667788888888889999988875
No 14
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.54 E-value=6.8e-13 Score=101.63 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=95.6
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c-cCCCCCeEEEEEec-CCCCcceeEEEEEEEecCCceEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N-GDLGIGSVREVNVK-SGLPATTSTERLELLDDEEHILG 103 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~-G~~~vG~vR~~~~~-~g~p~~~~~Erl~~~D~~~~~~~ 103 (186)
..+.+| +|+|||++||+++.|+.++|.|.|.+.++++ + |+.+.|..-.+... .|.+ ..+..+. ..|+..+++.
T Consensus 2 ~~~~si--~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~-~~w~s~~-~~~~~~~~i~ 77 (146)
T cd08860 2 RTDNSI--VIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTV-WSWVSER-TLDPVNRTVR 77 (146)
T ss_pred cceeEE--EEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEE-EEEEEEE-EecCCCcEEE
Confidence 356677 9999999999999999999999999999987 4 44445532222221 3321 2222221 2567667777
Q ss_pred EEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043944 104 IKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175 (186)
Q Consensus 104 Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~ 175 (186)
+.-. ...|+....+.|+|+|.+ +||++++...+ ++.....+....+.+.++..+...|++||+++|+.|
T Consensus 78 ~~~~-~~~p~~~m~~~W~f~~~~-~gT~V~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~~ 146 (146)
T cd08860 78 ARRV-ETGPFAYMNIRWEYTEVP-EGTRMRWVQDF-EMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAAA 146 (146)
T ss_pred EEEe-cCCCcceeeeeEEEEECC-CCEEEEEEEEE-EECCCCccchHHHHHHHhcccHHHHHHHHHHhhhcC
Confidence 6411 234688889999999997 56755555532 222112334556888888889999999999999843
No 15
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.48 E-value=1.7e-12 Score=97.55 Aligned_cols=137 Identities=13% Similarity=0.140 Sum_probs=90.0
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecC-CCCcceeEEEEEEEecCCceEE
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKS-GLPATTSTERLELLDDEEHILG 103 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~-g~p~~~~~Erl~~~D~~~~~~~ 103 (186)
++.++ +|+|||++||++++|+.++++|+|....... . ++..+|....+.+.. |.+ ..+..+++++++. ++++
T Consensus 2 i~~~~--~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~-~~l~ 77 (144)
T cd07825 2 VSVSR--TVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEEN-RLIA 77 (144)
T ss_pred eEEEE--EEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCC-CEEE
Confidence 45566 9999999999999999999999984332222 2 245688877765542 332 4677788999985 7899
Q ss_pred EEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHh
Q 043944 104 IKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDE--TCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 104 Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~--~~~~~~~~~~~gL~~Lk~~~E 172 (186)
|+......+......+++|.+.++++| .+..+..|.... ..... +......-++..|++|++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~g~T---~vt~~~~~~g~~-~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 78 WRPGPAGQEPGGHRWRWELEPIGPGRT---RVTETYDWSAVT-DLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEccCCCCCCCceeEEEEEEECCCCcE---EEEEEEeccCCh-hhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 986522223334566899999875555 455555665321 11111 223345667788899988875
No 16
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.47 E-value=3e-12 Score=94.95 Aligned_cols=136 Identities=12% Similarity=0.007 Sum_probs=93.7
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecC-CCCcceeEEEEEEEecCCceEEEEE
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKS-GLPATTSTERLELLDDEEHILGIKI 106 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~-g~p~~~~~Erl~~~D~~~~~~~Y~i 106 (186)
++.++ +|+||+++||+++.|+.++++|+|.+..+.++-.. -|+.+.+.... |. ...+..+++++|+. +.+.|+.
T Consensus 2 i~~s~--~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~-Gg~~~~~~~~~~g~-~~~~~~~i~~~~~~-~~i~~~~ 76 (139)
T cd07814 2 ITIER--EFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRV-GGRWFFFMTGPDGE-EGWVSGEVLEVEPP-RRLVFTW 76 (139)
T ss_pred eEEEE--EecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccC-CceEEEEEECCCCC-EEeccEEEEEEcCC-CeEEEEe
Confidence 45566 89999999999999999999999863333332111 16666544321 21 14678889999985 7899999
Q ss_pred EcCCc-cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 107 VGGDH-RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 107 ~~g~~-p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
..++. +......+++|.|.+ ++| .+.+...+.++ ......+...+..-+...|+.||+.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~T---~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 77 AFSDETPGPETTVTVTLEETG-GGT---RLTLTHSGFPE-EDAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred cccCCCCCCceEEEEEEEECC-CCE---EEEEEEEccCh-HhHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 87653 345678899999998 665 44444455432 1113345666677788889999999885
No 17
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.44 E-value=6.1e-12 Score=93.82 Aligned_cols=138 Identities=17% Similarity=0.135 Sum_probs=90.7
Q ss_pred ceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCC-cceeEEEEEEEecCCceEEE
Q 043944 26 NQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLP-ATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 26 ~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p-~~~~~Erl~~~D~~~~~~~Y 104 (186)
++++.++ .|++|+++||++++|++++++|+|.+.+++..+++.......+.+ ++.. ....+.++.++++. +.+.+
T Consensus 1 m~~~~~~--~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (144)
T cd05018 1 MKISGEF--RIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKV-GPVKGTFKGKVELSDLDPP-ESYTI 76 (144)
T ss_pred CeeeeEE--EecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEE-ccEEEEEEEEEEEEecCCC-cEEEE
Confidence 3567777 999999999999999999999999999887633221111112222 1110 01234556666664 67888
Q ss_pred EEEc-CCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 105 KIVG-GDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGN----TKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 105 ~i~~-g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~----~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
+... +......+.++++|.|.+ +|| .+.|+..+++ .+. ....+..+++..+...+++|+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~-~gT---~v~~~~~~~~-~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 77 TGEGKGGAGFVKGTARVTLEPDG-GGT---RLTYTADAQV-GGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EEEEcCCCceEEEEEEEEEEecC-CcE---EEEEEEEEEE-ccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7754 223356889999999984 665 5555566663 233 4455667777777788888888763
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=1.4e-11 Score=93.51 Aligned_cols=127 Identities=23% Similarity=0.308 Sum_probs=83.6
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecCCCC-cceeEEEEEEEecCCceEEEEEEcCC
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKSGLP-ATTSTERLELLDDEEHILGIKIVGGD 110 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~g~p-~~~~~Erl~~~D~~~~~~~Y~i~~g~ 110 (186)
.|+||+++||++++|+.++++|+|.+.++++ + ++.++|+...+...+..| ...+.-++.++++ .+.+.|.. .|+
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~~~~~-~g~ 85 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLLEVRA-SGD 85 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEEEEEE-EEe
Confidence 8999999999999999999999999999986 4 345677765443322111 1345566777777 57899985 444
Q ss_pred ccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCC-------CCCHHHHHHHHHHHHHHHHHHHHHH
Q 043944 111 HRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPE-------GNTKDETCYFVQALIRCNLKSLADV 170 (186)
Q Consensus 111 ~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~-------g~~~~~~~~~~~~~~~~gL~~Lk~~ 170 (186)
+. ...+++|.|.+ +|| .+.++..++.+. .+....+....+.++...+++||++
T Consensus 86 --~~-~~~~~~~~~~~-~gt---~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 86 --LE-GVGRWTLAPDG-SGT---VVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred --ee-EEEEEEEEEcC-CCE---EEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 33 36889999977 566 444455565321 2233444455555555566666654
No 19
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=3.2e-11 Score=86.88 Aligned_cols=131 Identities=21% Similarity=0.191 Sum_probs=92.7
Q ss_pred eEecCCHHHHHHHHhcCCCCCccCccceEEEEc--cCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEEcCCc
Q 043944 34 KHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVN--GDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDH 111 (186)
Q Consensus 34 ~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~--G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~~g~~ 111 (186)
..|+||+++||++++|+.++++|+|.+.++++. +....|....+.+..+. ......++..+++ +..++|+...++.
T Consensus 5 ~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~~~~~~ 82 (141)
T cd07812 5 IEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRVTGGGG 82 (141)
T ss_pred EEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEEecCCC
Confidence 389999999999999999999999999999873 33455666655543121 1467888888887 5789999988765
Q ss_pred cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCC---CHHHHHHHHHHHHHHHHHHHHHH
Q 043944 112 RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGN---TKDETCYFVQALIRCNLKSLADV 170 (186)
Q Consensus 112 p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~---~~~~~~~~~~~~~~~gL~~Lk~~ 170 (186)
+ ..+..++++.+.++++| .+.++..+.++... ....+...++..+...++++++.
T Consensus 83 ~-~~~~~~~~~~~~~~~~t---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 83 G-VDGTGEWRLEPEGDGGT---RVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred C-cceeEEEEEEECCCCcE---EEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 4 47788999999984354 56666777653222 34555666666666666666543
No 20
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=2.1e-10 Score=86.05 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=80.2
Q ss_pred EEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEc----cCCCCCeEEEEEecCC-CCcceeEEEEEEEecCCceEE
Q 043944 29 TSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVN----GDLGIGSVREVNVKSG-LPATTSTERLELLDDEEHILG 103 (186)
Q Consensus 29 ~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~----G~~~vG~vR~~~~~~g-~p~~~~~Erl~~~D~~~~~~~ 103 (186)
+.++ .|+||+++||++++|++++++|.|.+.++++. |...+|+.-.+.+..+ .+ ..++-+++.+++ ++.++
T Consensus 2 ~~s~--~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~-~~w~~~it~~~p-~~~f~ 77 (137)
T cd07820 2 ERST--VIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIP-QRWTTEITEVEP-PRRFV 77 (137)
T ss_pred eEEE--EcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCc-eEEEEEEEEEcC-CCeEE
Confidence 3455 89999999999999999999999999888873 2234567666666532 12 367777888887 47899
Q ss_pred EEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCC
Q 043944 104 IKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGN 147 (186)
Q Consensus 104 Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~ 147 (186)
+....|+ +.....++.+.|.+ +|| .+.....|++|-+.
T Consensus 78 ~~~~~G~--~~~w~h~~~f~~~~-~gT---~vt~~v~~~~p~g~ 115 (137)
T cd07820 78 DEQVSGP--FRSWRHTHRFEAIG-GGT---LMTDRVEYRLPLGP 115 (137)
T ss_pred EEeccCC--chhCEEEEEEEECC-Cce---EEEEEEEEeCCchh
Confidence 9988774 45567788999887 465 56666678765333
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.28 E-value=1.4e-10 Score=85.56 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=80.9
Q ss_pred ecCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCeEEEEEec-CCCCcceeEEEEEEEecCCceEEEEEEcCCccc
Q 043944 36 IRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGSVREVNVK-SGLPATTSTERLELLDDEEHILGIKIVGGDHRL 113 (186)
Q Consensus 36 I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~vR~~~~~-~g~p~~~~~Erl~~~D~~~~~~~Y~i~~g~~p~ 113 (186)
|+||+++||++++|+++++.|+|.+.++++ +.++. +..-.+.+. .+.+ ..+..++....+. . +.+...+| ++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~g--~~ 74 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIK-RSWTSRVTEDPPE-R-IRFEQISG--PF 74 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTC-EEEEEEEEEECTT-T-EEEESSET--TE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEE-EEEEEEEEEEEee-e-eeeeecCC--Cc
Confidence 689999999999999999999999999987 32221 221123333 2222 4566666655443 3 77777666 46
Q ss_pred eeEEEEEEEEeccC--CCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 043944 114 RNYSSIMTVHPEII--DGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLA 168 (186)
Q Consensus 114 ~~y~at~~v~p~~~--~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk 168 (186)
+.+.++|++.|.++ +|+. |.+.....++++.......+..+++......+++|+
T Consensus 75 ~~~~g~W~~~~~~~~~~g~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 75 KSFEGSWRFEPLGGNEGGTR-TRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEEETTECCEEE-EEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEEECCCCcCCCE-EEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 88999999999983 1431 334444455654444445566666666666666654
No 22
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.27 E-value=1.4e-10 Score=88.03 Aligned_cols=137 Identities=18% Similarity=0.153 Sum_probs=87.3
Q ss_pred EEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCccee--EEEEEEEecCCceEEEEE
Q 043944 29 TSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTS--TERLELLDDEEHILGIKI 106 (186)
Q Consensus 29 ~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~--~Erl~~~D~~~~~~~Y~i 106 (186)
+.++ +|+|||++||++|+|+.+++.|.|.+.+.+..|++.. .-.++++-|.-...+ +=++..+++..+++.+..
T Consensus 2 ~~~~--~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (146)
T cd07823 2 ENEF--TVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEY--KGTVKVKLGPISASFKGTARLLEDDEAARRAVLEA 77 (146)
T ss_pred CceE--EecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeE--EEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEE
Confidence 3455 8999999999999999999999999888876443222 112333322100122 224666663468888876
Q ss_pred EcCCc---cceeEEEEEEEEeccCCCCCeEEEEEEEEEeC--C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 107 VGGDH---RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDV--P-EGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 107 ~~g~~---p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~--p-~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
...+. .......++++.|.+ +|| .+.|...++. | ..+....++...+..+...+++|++++|.
T Consensus 78 ~g~~~~~~g~~~~~~~~~l~~~~-~gT---~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e~ 146 (146)
T cd07823 78 TGKDARGQGTAEATVTLRLSPAG-GGT---RVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLAA 146 (146)
T ss_pred EEecCCCcceEEEEEEEEEEecC-CcE---EEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 54211 111456688888844 554 5666665542 1 34445667778888888888999998873
No 23
>PRK10724 hypothetical protein; Provisional
Probab=99.25 E-value=3.6e-10 Score=87.79 Aligned_cols=137 Identities=12% Similarity=0.117 Sum_probs=92.3
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c-cCCCCCeEEEEEec-CCCCcceeEEEEEEEecCCceEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N-GDLGIGSVREVNVK-SGLPATTSTERLELLDDEEHILG 103 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~-G~~~vG~vR~~~~~-~g~p~~~~~Erl~~~D~~~~~~~ 103 (186)
+++.++ .|++|++++|+++.|.++|++|+|.+.++++ + .++ +....++++ .|. ...+..+.. ++++ +++.
T Consensus 16 ~i~~~~--~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~--~~~a~l~v~~~g~-~~~f~srv~-~~~~-~~I~ 88 (158)
T PRK10724 16 QISRTA--LVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG--QMTAAVDVSKAGI-SKTFTTRNQ-LTSN-QSIL 88 (158)
T ss_pred eEEEEE--EecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC--EEEEEEEEeeCCc-cEEEEEEEE-ecCC-CEEE
Confidence 577776 9999999999999999999999999999987 3 222 223333332 232 134545544 4554 5899
Q ss_pred EEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043944 104 IKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175 (186)
Q Consensus 104 Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~ 175 (186)
+.+++| |++.+.+.|+++|.++++|+ +.....|+.+..+....+..+.+......+++..++++++.
T Consensus 89 ~~~~~G--pF~~l~g~W~f~p~~~~~t~---V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~y 155 (158)
T PRK10724 89 MQLVDG--PFKKLIGGWKFTPLSQEACR---IEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVY 155 (158)
T ss_pred EEecCC--ChhhccceEEEEECCCCCEE---EEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 57889999999999855554 44444554333333445555666666666666677766654
No 24
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=99.09 E-value=4.1e-09 Score=77.90 Aligned_cols=131 Identities=18% Similarity=0.037 Sum_probs=82.5
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEE
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIV 107 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~ 107 (186)
++.++ .|+|||++||++++|...++.|.+... ..++..+|..-.+...+.. ...+.-+++++++ ++.++|+..
T Consensus 2 ~~~~~--~i~ap~e~Vw~~~td~~~~~~W~~~~~---~~~~~~~G~~~~~~~~~~~-~~~~~~~v~~~~~-~~~l~~~~~ 74 (136)
T cd08893 2 FVYVT--YIRATPEKVWQALTDPEFTRQYWGGTT---VESDWKVGSAFEYRRGDDG-TVDVEGEVLESDP-PRRLVHTWR 74 (136)
T ss_pred eEEEE--EecCCHHHHHHHHcCchhhhheecccc---cccCCcCCCeEEEEeCCCc-ccccceEEEEecC-CCeEEEEEe
Confidence 44555 999999999999999999999987521 2333445554445544310 1345667888887 477888776
Q ss_pred cCCc----cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 108 GGDH----RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 108 ~g~~----p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
.+.. +......++.|.+.+ +++++++ ..... +.+ ......+..-+...|+.||+.+|+
T Consensus 75 ~~~~~~~~~~~~~~v~~~l~~~~-~~t~l~~---~~~~~-~~~---~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 75 AVWDPEMAAEPPSRVTFEIEPVG-DVVKLTV---THDGF-PPG---SPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred cCCCcccCCCCCEEEEEEEEecC-CcEEEEE---EecCC-CCc---hhHHHhhhcCHHHHHHHHHHHhcC
Confidence 4332 223567789999987 5652222 22221 122 124445556667789999999874
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.05 E-value=5.4e-09 Score=80.50 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=87.7
Q ss_pred CceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEE
Q 043944 25 ENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 25 ~~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y 104 (186)
...++.++ +|+||+++||++++|+.++++|++.. ..+..+|....+.+.... ...+..+++++|+. +++.|
T Consensus 10 ~~~i~~~~--~i~Ap~e~Vw~altdp~~~~~W~~~~-----~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p~-~~l~~ 80 (157)
T cd08899 10 GATLRFER--LLPAPIEDVWAALTDPERLARWFAPG-----TGDLRVGGRVEFVMDDEE-GPNATGTILACEPP-RLLAF 80 (157)
T ss_pred CeEEEEEE--ecCCCHHHHHHHHcCHHHHHhhcCCC-----CCCcccCceEEEEecCCC-CCccceEEEEEcCC-cEEEE
Confidence 34455555 99999999999999999999999832 223345665556654310 14667888999885 78999
Q ss_pred EEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043944 105 KIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMA 175 (186)
Q Consensus 105 ~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~ 175 (186)
+...++ .....+++|.+.+ +||.+++ ...+.+ .. .....+..-....|+.|++++|+..
T Consensus 81 ~~~~~~---~~~~~~~~l~~~~-~gT~v~~---~~~~~~-~~----~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 81 TWGEGG---GESEVRFELAPEG-DGTRLTL---THRLLD-ER----FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EecCCC---CCceEEEEEEEcC-CCEEEEE---EEeccC-ch----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 886544 2346688898877 6663333 223322 11 2345556667888999999999754
No 26
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.03 E-value=1.1e-08 Score=76.42 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=83.1
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEc-cCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVN-GDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIK 105 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~-G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~ 105 (186)
.++.++ .|+||+++||++++|+..+++|++... +... |.+..| .+...++. ...+.-+++.+++ +++++|+
T Consensus 2 ~i~~~i--~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g---~~~~~~~~-~~~~~~~i~~~~p-~~~l~~~ 73 (145)
T cd08898 2 RIERTI--LIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATG---EITYPGYE-HGVFPVTVVEVDP-PRRFSFR 73 (145)
T ss_pred eeEEEE--EecCCHHHHHHHhcChhhhhhcccccC-CCcccCCccee---EEecCCCC-ccceEEEEEEeCC-CcEEEEE
Confidence 467777 999999999999999999999998543 2221 222122 23333221 1345668889988 4789998
Q ss_pred EEcCC----c---cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 106 IVGGD----H---RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 106 i~~g~----~---p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
..... . .......+++|.+.+ +||.+++... -|...+..........+..-....|+.|++.||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~--~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTES--GFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEc--CCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 75432 1 122356789999987 6764444331 1321110111123345566677888999988873
No 27
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.94 E-value=2.9e-08 Score=77.75 Aligned_cols=153 Identities=14% Similarity=0.104 Sum_probs=105.0
Q ss_pred cccHHHHHhhhcCCCCCceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEE-EEecCCCCcce
Q 043944 9 VMEAQYIRRHHRHEPRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVRE-VNVKSGLPATT 87 (186)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~-~~~~~g~p~~~ 87 (186)
+|+++-|.+ ...+.+++.+| +|++|+++||.+.+|+.++|.|+-.+.|+++--|.. .|. ...+.|. .-+
T Consensus 57 ~~~a~~~~g----~~~~i~v~~~V--~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr---SrW~~~ap~g~-~v~ 126 (217)
T COG5637 57 LATALKIEG----MAKPIEVEVQV--TIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR---SRWKANAPLGL-EVE 126 (217)
T ss_pred HHHHHHhhc----ccCceEEEEEE--EeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc---cceeEcCCCCc-eEE
Confidence 577887777 45567777777 999999999999999999999999999998732321 342 3322232 134
Q ss_pred eEEEEEEEecCCceEEEEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHH----HHHHHHH
Q 043944 88 STERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFV----QALIRCN 163 (186)
Q Consensus 88 ~~Erl~~~D~~~~~~~Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~----~~~~~~g 163 (186)
+.-+|+..-+ +.++.|+-++|.- +. -.+.++|.+.. +.+ |.+.-+..|.+|.+.......+++ +..++.-
T Consensus 127 Wea~it~d~~-~e~I~W~Sl~Ga~-v~-NsG~VrF~~~p-g~~--t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~D 200 (217)
T COG5637 127 WEAEITKDIP-GERIQWESLPGAR-VE-NSGAVRFYDAP-GDS--TEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDD 200 (217)
T ss_pred EeehhhccCC-CcEEeeecCCCCc-CC-CCccEEeeeCC-CCc--eEEEEEEEecCCccHHHHHHHHHhccchHHHHHHH
Confidence 6666776555 6789999988732 22 25578888887 344 566666678877666554444443 4556777
Q ss_pred HHHHHHHHhhhhhc
Q 043944 164 LKSLADVSERMAVQ 177 (186)
Q Consensus 164 L~~Lk~~~E~~~~~ 177 (186)
|+..|...|.....
T Consensus 201 L~RFk~~~e~~q~s 214 (217)
T COG5637 201 LERFKEYQENGQPS 214 (217)
T ss_pred HHHHHHHHHccCcc
Confidence 88888888875443
No 28
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.87 E-value=8.6e-08 Score=72.07 Aligned_cols=133 Identities=13% Similarity=0.027 Sum_probs=80.8
Q ss_pred EEEeEecCCHHHHHHHHhcCCCCCccCc--cceEEEEccCCCCCeEEEEEe--cCCCCcceeEEEEEEEecCCceEEEEE
Q 043944 31 ALVKHIRAPVHLVWSLVRRFDQPQKYKP--FVSRCVVNGDLGIGSVREVNV--KSGLPATTSTERLELLDDEEHILGIKI 106 (186)
Q Consensus 31 sv~~~I~Ap~~~VW~vl~Df~~~~~W~p--~v~~~~~~G~~~vG~vR~~~~--~~g~p~~~~~Erl~~~D~~~~~~~Y~i 106 (186)
++++.|+||+++||++++|...+.+|.+ .......+.+..+|..-.+.+ .+|.. ....-++++++| ++++.|+.
T Consensus 3 ~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~v~e~~p-~~~l~~t~ 80 (139)
T cd08894 3 VTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRIVFLEIEP-PERIVYDH 80 (139)
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceEEEEEEcC-CCEEEEEe
Confidence 3456899999999999999999999974 222111222333444433333 23421 223457889998 47899987
Q ss_pred EcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 107 VGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 107 ~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
...+ . ....+++|.|.+ +||++++.. .+.. .......+...+..-....|+.|++.+++
T Consensus 81 ~~~~--~-~~~v~~~~~~~~-~gT~ltl~~---~~~~-~~~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 81 GSGP--P-RFRLTVTFEEQG-GKTRLTWRQ---VFPT-AAERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred ccCC--C-cEEEEEEEEECC-CCEEEEEEE---EcCC-HHHHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 5432 1 245789999987 777555443 3431 11111223344556677788888888874
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.86 E-value=1.2e-07 Score=71.47 Aligned_cols=132 Identities=19% Similarity=0.121 Sum_probs=79.7
Q ss_pred EEEeEecCCHHHHHHHHhcCCCCCccCcc-----ceEEEEccCCCCCeEEEEEe--cCCCCcceeEEEEEEEecCCceEE
Q 043944 31 ALVKHIRAPVHLVWSLVRRFDQPQKYKPF-----VSRCVVNGDLGIGSVREVNV--KSGLPATTSTERLELLDDEEHILG 103 (186)
Q Consensus 31 sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~-----v~~~~~~G~~~vG~vR~~~~--~~g~p~~~~~Erl~~~D~~~~~~~ 103 (186)
++++.|+||+++||++++|-..+.+|... +..+.+ +..+|..-.+.+ .+|. .....-++.++++. +++.
T Consensus 3 ~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~--d~~~Gg~~~~~~~~~~g~-~~~~~g~~~~~~p~-~~l~ 78 (143)
T cd08900 3 TLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEF--DFRVGGREVSRGGPKGGP-EITVEARYHDIVPD-ERIV 78 (143)
T ss_pred EEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEE--ecCCCCEEEEEEECCCCC-EEeeeEEEEEecCC-ceEE
Confidence 35568999999999999999999999743 233333 333444333333 2442 13455678889884 7888
Q ss_pred EEEEc--CCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 104 IKIVG--GDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 104 Y~i~~--g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
|+... ++.+......++.|.+.+ +||++++......++ .. .....+..-....|+.|+++|++
T Consensus 79 ~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~---~~---~~~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 79 YTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFLD---GD---DDPAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEeccc---cc---chhhhHHHHHHHHHHHHHHHHhC
Confidence 87532 222222345789999987 777555444221111 11 11233445566778999998875
No 30
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.82 E-value=2.3e-07 Score=70.50 Aligned_cols=135 Identities=10% Similarity=-0.040 Sum_probs=77.3
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCc-c-------ceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCC
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKP-F-------VSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEE 99 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p-~-------v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~ 99 (186)
++.++ +|+||+++||++++| .+.+|.+ . ...|+++ ..+|....+...+|. ....-++.+++|.
T Consensus 2 ~~~~~--~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d--~~~GG~~~~~~~~g~--~~~~g~v~~v~p~- 72 (149)
T cd08891 2 VRKSV--TVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFE--PRAGGRWYEIGEDGT--ECEWGTVLAWEPP- 72 (149)
T ss_pred eEEEE--EecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEc--ccCCcEEEEecCCCc--EeceEEEEEEcCC-
Confidence 34455 999999999999999 4778864 2 1344543 223332233333442 2345678889884
Q ss_pred ceEEEEEEcC--Cccce--eEEEEEEEEeccCCCCCeEEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 100 HILGIKIVGG--DHRLR--NYSSIMTVHPEIIDGRPGTLVIESFVVDV-PEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 100 ~~~~Y~i~~g--~~p~~--~y~at~~v~p~~~~gt~~t~v~w~~~~~~-p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
++++|+-..+ ..+.. .-..+++|+|.+++||++|+.... +.. +.+..+......+..-....|+.|++.+|+
T Consensus 73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~--~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRG--FERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEec--ccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 7888876421 11111 246789999976466755554432 221 111112223333444556678899988875
No 31
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.81 E-value=1.1e-07 Score=71.06 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=77.6
Q ss_pred EEeEecCCHHHHHHHHhcCCCCCccCccc-----eEEEEccCCCCCeEEEEEe--cCCCCcceeEEEEEEEecCCceEEE
Q 043944 32 LVKHIRAPVHLVWSLVRRFDQPQKYKPFV-----SRCVVNGDLGIGSVREVNV--KSGLPATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 32 v~~~I~Ap~~~VW~vl~Df~~~~~W~p~v-----~~~~~~G~~~vG~vR~~~~--~~g~p~~~~~Erl~~~D~~~~~~~Y 104 (186)
+++.|+||+++||++++|-..+.+|++.. ..++ .+-.+|..-.+.+ .+|.....+.-++.++++ ++++.|
T Consensus 4 ~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~--~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~~l~~ 80 (133)
T cd08897 4 VETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAE--NDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HKLIEY 80 (133)
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceee--ecCCcCCEEEEEEEcCCCCcccccceEEEEECC-CCEEEE
Confidence 34499999999999999999999996432 2233 2334555443433 233211235667888988 588999
Q ss_pred EEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 105 KIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 105 ~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
+..++ ...+++|.|.+ +||++++. +.+.+.. ....+..-....|+.|++.+|.
T Consensus 81 ~~~~~------~~v~~~l~~~~-~gT~l~l~-----~~~~~~~----~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 81 TMEDG------REVEVEFTEEG-DGTKVVET-----FDAENEN----PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EcCCC------CEEEEEEEECC-CCEEEEEE-----ECCCCCC----cHHHHHHHHHHHHHHHHHHhhC
Confidence 97432 35689999987 77744432 3321111 1233445557788999988873
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.80 E-value=1.9e-07 Score=70.71 Aligned_cols=133 Identities=17% Similarity=0.084 Sum_probs=77.5
Q ss_pred EEEeEecCCHHHHHHHHhcCCCCCccCcc----ceEEEEccCCCCCeEEEEEe--cCCCCcceeEEEEEEEecCCceEEE
Q 043944 31 ALVKHIRAPVHLVWSLVRRFDQPQKYKPF----VSRCVVNGDLGIGSVREVNV--KSGLPATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 31 sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~----v~~~~~~G~~~vG~vR~~~~--~~g~p~~~~~Erl~~~D~~~~~~~Y 104 (186)
.+++.|+||+++||++++|...+.+|++. +..+++ +..+|..-.+.+ .+|. .....-++.++||. +++.|
T Consensus 3 ~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~--d~~~GG~~~~~~~~~~g~-~~~~~g~v~~i~p~-~~l~~ 78 (146)
T cd08896 3 VLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAEL--DLRPGGAFRTVMRGPDGE-EFPNPGCFLEVVPG-ERLVF 78 (146)
T ss_pred EEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEE--EeecCcEEEEEEECCCCC-EecceEEEEEEeCC-CEEEE
Confidence 34568999999999999999999999742 223333 222344333333 2342 12346678999984 78888
Q ss_pred EEE--cCCccc-ee-EEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 105 KIV--GGDHRL-RN-YSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 105 ~i~--~g~~p~-~~-y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
+-. ++..+. .. ...+++|++.+ +||++|+.. .+.. ....+......+..-....|+.|++.+|
T Consensus 79 t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~---~~~~-~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARA---RHWT-EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEE---EeCC-HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 742 221111 11 35689999987 777555432 2321 1111111112234557778888888876
No 33
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=8.6e-07 Score=67.14 Aligned_cols=130 Identities=19% Similarity=0.065 Sum_probs=76.8
Q ss_pred EEEeEecCCHHHHHHHHhcCCCCCccCccc-eEEEE-ccCCCCCeEEEE--EecC-------CCCcceeEEEEEEEecCC
Q 043944 31 ALVKHIRAPVHLVWSLVRRFDQPQKYKPFV-SRCVV-NGDLGIGSVREV--NVKS-------GLPATTSTERLELLDDEE 99 (186)
Q Consensus 31 sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v-~~~~~-~G~~~vG~vR~~--~~~~-------g~p~~~~~Erl~~~D~~~ 99 (186)
++++.|+||+++||++++|...+.+|.+.- -.+.. +.+..+|..-.+ ...+ |. ...+.-+++++++.
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~-~~~~~g~v~~v~p~- 80 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGN-TDVFGGRFLELVPN- 80 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCc-EeeeEEEEEEEcCC-
Confidence 455689999999999999999999997521 12211 223233433222 3222 21 12455578899885
Q ss_pred ceEEEEEEc--CCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 100 HILGIKIVG--GDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 100 ~~~~Y~i~~--g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
+++.|+..- +..+ .....++.|++.+ ++|. +.++... .+.. ........-....|+.|++++|
T Consensus 81 ~~i~~~~~~~~~~~~-~~~~v~~~~~~~~-~~T~---lt~~~~~-~~~~----~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 81 ERIVYTDVFDDPSLS-GEMTMTWTLSPVS-GGTD---VTIVQSG-IPDG----IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred CEEEEEEEecCCCCC-ceEEEEEEEEecC-CCEE---EEEEEeC-CCch----hhhhHHHHHHHHHHHHHHHHhc
Confidence 788887542 2223 2346789999887 6663 3333322 1221 1223445556677888888876
No 34
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=7.4e-07 Score=67.38 Aligned_cols=133 Identities=8% Similarity=-0.049 Sum_probs=81.1
Q ss_pred EEEeEecCCHHHHHHHHhcCCCCCccCccc----eEEEEccCCCCCeEEEEEec--CCCCcceeEEEEEEEecCCceEEE
Q 043944 31 ALVKHIRAPVHLVWSLVRRFDQPQKYKPFV----SRCVVNGDLGIGSVREVNVK--SGLPATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 31 sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v----~~~~~~G~~~vG~vR~~~~~--~g~p~~~~~Erl~~~D~~~~~~~Y 104 (186)
++++.++||+++||++++|-..+.+|...- ..++ .+..+|..-.+.+. +|. ...+.-++++++| ++++.|
T Consensus 3 ~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~--~d~r~GG~~~~~~~~~~g~-~~~~~g~~~ei~p-~~~l~~ 78 (142)
T cd07826 3 VITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCE--CDIRVGGSYRYVHRAPDGE-EMGFHGVYHEVTP-PERIVQ 78 (142)
T ss_pred EEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEE--EeccCCCEEEEEEECCCCC-EecceEEEEEEcC-CCEEEE
Confidence 456689999999999999999999997432 2233 33344554444442 332 1345667888988 478888
Q ss_pred EEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 105 KIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 105 ~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
+-.-.+.+-.....+++|.+.+ +||++++. ..|.. .......+...+..-....|+.|++.|+
T Consensus 79 t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~---~~~~~-~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 79 TEEFEGLPDGVALETVTFTELG-GRTRLTAT---SRYPS-KEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EeEecCCCCCceEEEEEEEECC-CCEEEEEE---EEeCC-HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7543222223456789999987 77754442 33421 1111123444555666777777777764
No 35
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.69 E-value=7.3e-07 Score=68.08 Aligned_cols=135 Identities=19% Similarity=0.217 Sum_probs=81.0
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEE--EEEEecCCceEEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTER--LELLDDEEHILGI 104 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Er--l~~~D~~~~~~~Y 104 (186)
+.+.+. .|++|+++||+.|.|++.+..-+|.+.+.+..|+.-.+.++ +.+ |.-...+.-+ +..+|+..++++-
T Consensus 2 ~~~G~f--~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~e~~~~v~-l~i--g~l~~~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 2 DYEGTF--RVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGDEYTAKVK-LKI--GPLKGTFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred cccceE--EecCCHHHHHHHhcCHHHHHhhcCCcceeeecCCeEEEEEE-Eee--cceeEEEEEEEEEccccCCCcEEEE
Confidence 345555 89999999999999999999999999999987652122222 222 2101233333 4444566666666
Q ss_pred EEEcCCc-cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Q 043944 105 KIVGGDH-RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTK----DETCYFVQALIRCNLKSLADVS 171 (186)
Q Consensus 105 ~i~~g~~-p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~----~~~~~~~~~~~~~gL~~Lk~~~ 171 (186)
....|.. .+-+..+.++|.|.+ .+| .+.|+...+. .+... ..+....+..+...++.|+..+
T Consensus 77 ~g~G~~~~g~~~~~~~v~l~~~g-~gt---~v~w~~~~~~-gg~laqlGsr~i~~~~~kli~~~~~~l~~~l 143 (146)
T COG3427 77 NGSGGGAAGFADGTVDVQLEPSG-EGT---RVNWFADANV-GGKLAQLGSRLIDSVARKLINRFFDCLSSEL 143 (146)
T ss_pred EeecccccceeeeeeEEEEEEcC-CCc---EEEEEEEccc-cHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555322 455778889999998 444 7778776653 22222 2233333444444444554443
No 36
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.64 E-value=8e-06 Score=64.58 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=81.8
Q ss_pred ceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecCCCCc---ceeEEEEEEEecCC
Q 043944 26 NQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKSGLPA---TTSTERLELLDDEE 99 (186)
Q Consensus 26 ~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~g~p~---~~~~Erl~~~D~~~ 99 (186)
..+..+. +|++||++||+++.|.+.+++|.|.+.++++ + |++. .+-...+....|. ..+..+-...+.++
T Consensus 41 ~~~k~~~--~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~--~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~ 116 (195)
T cd08876 41 KEFKAVA--EVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNE--RSVYTVIDLPWPVKDRDMVLRSTTEQDADD 116 (195)
T ss_pred EEEEEEE--EEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCc--EEEEEEEecccccCCceEEEEEEEEEcCCC
Confidence 4555555 8999999999999999999999999999986 4 2221 2222333222111 11111111222212
Q ss_pred ceEEEEEEcCCc--c-------ceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043944 100 HILGIKIVGGDH--R-------LRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADV 170 (186)
Q Consensus 100 ~~~~Y~i~~g~~--p-------~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~ 170 (186)
..+...+.+.+. | +..+.+.+.++|.++++| .+.....+++...+....+...+.......|++|+++
T Consensus 117 ~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t---~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 117 GSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKT---RVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred CEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeE---EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444433221 2 456778899999985555 4444445665333344455566666677778888876
Q ss_pred H
Q 043944 171 S 171 (186)
Q Consensus 171 ~ 171 (186)
+
T Consensus 194 ~ 194 (195)
T cd08876 194 L 194 (195)
T ss_pred h
Confidence 5
No 37
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.59 E-value=1.1e-06 Score=65.92 Aligned_cols=130 Identities=12% Similarity=-0.061 Sum_probs=77.9
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEE
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIV 107 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~ 107 (186)
++.++ .|+||+++||+.++|...+.+|.+.-...++ .+|..-.+.+.... ..+.-++.+++| ++++.|+..
T Consensus 2 ~~~~~--~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~----~~Gg~~~~~~~~~~--~~~~g~~~~~~p-~~~l~~~w~ 72 (136)
T cd08901 2 AKTAM--LIRRPVAEVFEAFVDPEITTKFWFTGSSGRL----EEGKTVTWDWEMYG--ASVPVNVLEIEP-NKRIVIEWG 72 (136)
T ss_pred eeEEE--EecCCHHHHHHHhcCHHHhccccccCCCccc----cCCCEEEEEEEccC--CceEEEEEEEcC-CCEEEEEec
Confidence 34555 9999999999999999999998653333333 23433223332111 134557888988 478999875
Q ss_pred cCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhh
Q 043944 108 GGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDET--CYFVQALIRCNLKSLADVSERM 174 (186)
Q Consensus 108 ~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~--~~~~~~~~~~gL~~Lk~~~E~~ 174 (186)
.++ + ....+++|.+.++++|++++.. .-+ +.. ..+.. ...+..-....|+.|+..+|+.
T Consensus 73 ~~~-~--~s~v~~~l~~~~~ggT~ltl~~--~~~--~~~-~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 73 DPG-E--PTTVEWTFEELDDGRTFVTITE--SGF--PGT-DDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred CCC-C--CEEEEEEEEECCCCcEEEEEEE--CCC--CCC-cHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 431 1 2456899998764667545443 112 221 11111 1122344567789999999873
No 38
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.59 E-value=2.1e-06 Score=63.61 Aligned_cols=121 Identities=13% Similarity=0.079 Sum_probs=73.3
Q ss_pred EEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCC-eEEEEEecCCCCcceeEEEEEEEecCCceEEEEEEcC
Q 043944 31 ALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIG-SVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGG 109 (186)
Q Consensus 31 sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG-~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~~g 109 (186)
++++.|+||+++||+.++|-..+.+|.....+.+. .+| ..+ +.+| .+.-++.++++ +++++|+-...
T Consensus 3 ~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~----~~GG~~~---~~~g----~~~g~~~~i~p-~~~l~~~w~~~ 70 (126)
T cd08892 3 SLTETFQVPAEELYEALTDEERVQAFTRSPAKVDA----KVGGKFS---LFGG----NITGEFVELVP-GKKIVQKWRFK 70 (126)
T ss_pred EEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecC----CCCCEEE---EeCC----ceEEEEEEEcC-CCEEEEEEEcC
Confidence 34568999999999999999999999754333333 233 333 2244 34556888888 47788776432
Q ss_pred Cccc-eeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 110 DHRL-RNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 110 ~~p~-~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
+.+- .....++.|.+.+ +||++++... .- +.. .....-.+.-...|+.|++.++
T Consensus 71 ~~~~~~~s~v~~~l~~~~-~gT~ltl~~~---g~-~~~----~~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 71 SWPEGHYSTVTLTFTEKD-DETELKLTQT---GV-PAG----EEERTREGWERYYFESIKQTFG 125 (126)
T ss_pred CCCCCCcEEEEEEEEECC-CCEEEEEEEE---CC-CCc----hHHHHHhhHHHHHHHHHHHHhC
Confidence 2221 2346789999886 7775554442 21 222 1222233444457788888775
No 39
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.53 E-value=1e-06 Score=66.98 Aligned_cols=135 Identities=13% Similarity=0.194 Sum_probs=83.2
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCeEEEEEec-CCCCcceeEEEEEEEecCCceEEEE
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGSVREVNVK-SGLPATTSTERLELLDDEEHILGIK 105 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~vR~~~~~-~g~p~~~~~Erl~~~D~~~~~~~Y~ 105 (186)
++.+. .++.+|++++++|.|...||++.|.+..+.+ +.++ ..-+-.+++. .|. ..++.-|.+ .++..+.+.=.
T Consensus 4 ~~~s~--lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~-~~l~A~l~V~~k~i-~e~F~Trv~-~~~~~~~I~~~ 78 (146)
T COG2867 4 IERTA--LVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNE-RELIAELDVGFKGI-RETFTTRVT-LKPTARSIDMK 78 (146)
T ss_pred eEeee--eccCCHHHHHHHHHHHHhCchhccccccceEeccCc-ceeEEEEEEEhhhe-eeeeeeeee-ecCchhhhhhh
Confidence 44554 8999999999999999999999999988887 4322 2222233332 121 123444443 34444566666
Q ss_pred EEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 043944 106 IVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAV 176 (186)
Q Consensus 106 i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~~ 176 (186)
.++| |++...++|++.|.++++|++.+.. +|+.. .......+...+....+.+-+.+++-|.
T Consensus 79 l~~G--PFk~L~~~W~F~pl~~~~ckV~f~l---dfeF~----s~ll~~~~g~~f~~~a~~mv~aF~kRA~ 140 (146)
T COG2867 79 LIDG--PFKYLKGGWQFTPLSEDACKVEFFL---DFEFK----SRLLGALIGPVFKRLASKMVEAFEKRAK 140 (146)
T ss_pred hhcC--ChhhhcCceEEEECCCCceEEEEEE---Eeeeh----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766 4566788999999876777555554 34322 2234444455555555555555554443
No 40
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.50 E-value=5.5e-06 Score=60.10 Aligned_cols=122 Identities=13% Similarity=-0.006 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEEcCCcc-cee
Q 043944 37 RAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGDHR-LRN 115 (186)
Q Consensus 37 ~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~~g~~p-~~~ 115 (186)
+||+++||+++++...+.+|.+ ....+. +..+|..-.+.-.+|. .....-+++++++. +++.|+...++.+ -..
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~--~~~~Gg~~~~~~~~g~-~~~~~~~v~~~~p~-~~i~~~~~~~~~~~~~~ 75 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEM--DFRPGGSFRFMDPDGG-EFGFDGTVLEVEPP-ERIVFTWRMPDDPDGPE 75 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEE--ECSTTEEEEEEETTSE-EEEEEEEEEEEETT-TEEEEEEEEETSSSCEE
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCccee--eeecCCEEEEEecCCC-CceeeEEEEEEeCC-EEEEEEEEccCCCCCCc
Confidence 6999999999999999999921 122222 2234554444224442 13344468899884 7799986543322 335
Q ss_pred EEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHh
Q 043944 116 YSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYF-VQALIRCNLKSLADVSE 172 (186)
Q Consensus 116 y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~-~~~~~~~gL~~Lk~~~E 172 (186)
...++.|.+.+ ++|++++.. ..+.. . ..... +..-....|++|++.||
T Consensus 76 ~~v~~~~~~~~-~~T~l~~~~--~~~~~-----~-~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 76 SRVTFEFEEEG-GGTRLTLTH--SGFPD-----D-DEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEET-TEEEEEEEE--EEEHS-----H-HHHHHCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEcC-CcEEEEEEE--EcCCc-----c-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 57789999954 777544444 22321 1 22222 66667788899998886
No 41
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.2e-05 Score=61.56 Aligned_cols=100 Identities=12% Similarity=0.046 Sum_probs=62.2
Q ss_pred CceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEE
Q 043944 25 ENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 25 ~~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y 104 (186)
+..++-+. .|+||+++||+.++|-..+.+|+. -..++.+...+.+....+...+| +...+..++.++++. +++.|
T Consensus 7 ~~~~~~er--~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g-~~~~~~~~~~~v~p~-~rIv~ 81 (149)
T COG3832 7 DRTLEIER--LIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDG-PVHSFEGEYLEVVPP-ERIVF 81 (149)
T ss_pred CceEEEEE--eecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCC-CeeecceEEEEEcCC-cEEEE
Confidence 33444444 899999999999999999999986 32233321111122333444444 223567788888885 66777
Q ss_pred EEEcC--CccceeEEEEEEEEeccCCC
Q 043944 105 KIVGG--DHRLRNYSSIMTVHPEIIDG 129 (186)
Q Consensus 105 ~i~~g--~~p~~~y~at~~v~p~~~~g 129 (186)
+-... ..+...-..+++|++..+++
T Consensus 82 tw~~~~~~~~~~~~~v~~~l~~~~~g~ 108 (149)
T COG3832 82 TWDFDEDGEPFLKSLVTITLTPEDDGG 108 (149)
T ss_pred EeccCCCCCcccCceEEEEEEEecCCC
Confidence 66543 33433457788888876453
No 42
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.38 E-value=1.2e-05 Score=60.68 Aligned_cols=129 Identities=21% Similarity=0.176 Sum_probs=74.1
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEE-EEEecCCC-C-cceeEEEEEEEecCCceEEEEEEcCCc
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVR-EVNVKSGL-P-ATTSTERLELLDDEEHILGIKIVGGDH 111 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR-~~~~~~g~-p-~~~~~Erl~~~D~~~~~~~Y~i~~g~~ 111 (186)
+|++|+++||++|.|+.++..=+|.+.+.+..| + ..+ .++++-|. . .-..+=++..+|+..+ +...+...+.
T Consensus 4 ~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~---~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~-~~~~~~g~g~ 78 (140)
T PF06240_consen 4 EVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-D---EYKGKVKVKVGPIKGTFDGEVRITEIDPPES-YTLEFEGRGR 78 (140)
T ss_dssp EECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T---EEEEEEEEESCCCEEEEEEEEEEEEEETTTE-EEEEEEEEEC
T ss_pred EecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c---EEEEEEEEEeccEEEEEEEEEEEEEcCCCcc-eEeeeeccCC
Confidence 899999999999999999988899999998754 2 111 13332221 0 0123344666777543 3344433222
Q ss_pred -cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCC---CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043944 112 -RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVP---EGNTKDETCYFVQALIRCNLKSLADVS 171 (186)
Q Consensus 112 -p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p---~g~~~~~~~~~~~~~~~~gL~~Lk~~~ 171 (186)
.-.+..+.+++...++++ |.+.|+..++.. ..+....+....+.++...+++|++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~---T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 79 GGGSSASANITLSLEDDGG---TRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp TCCEEEEEEEEEEECCCTC---EEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEEEcCCCCC---cEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 123445566666655333 678888877631 222334555666666666666666654
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.80 E-value=0.00032 Score=52.54 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=55.7
Q ss_pred ecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEEcCC-ccce
Q 043944 36 IRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVGGD-HRLR 114 (186)
Q Consensus 36 I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~~g~-~p~~ 114 (186)
++||+++||++++|-..+.+|.-. ..++++ ..+|..-.+. .+ .+.-+.+++|+. +++.|+-.-.+ .+-.
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d--~~~GG~f~~~--~~----~~~G~~~ev~pp-~rlv~tw~~~~~~~~~ 70 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMD--AKVGGKFSLF--NG----SVEGEFTELEKP-KKIVQKWRFRDWEEDV 70 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCcccc--CCcCCEEEEe--cC----ceEEEEEEEcCC-CEEEEEEecCCCCCCC
Confidence 589999999999999999888411 223432 2234432222 23 355577888884 67877654322 1111
Q ss_pred eEEEEEEEEeccCCCCCeEEEE
Q 043944 115 NYSSIMTVHPEIIDGRPGTLVI 136 (186)
Q Consensus 115 ~y~at~~v~p~~~~gt~~t~v~ 136 (186)
....++.|.+.++++|++|+..
T Consensus 71 ~s~vt~~~~~~~~g~T~lt~~~ 92 (132)
T PTZ00220 71 YSKVTIEFRAVEEDHTELKLTQ 92 (132)
T ss_pred ceEEEEEEEeCCCCcEEEEEEE
Confidence 2457899999764667555544
No 44
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0064 Score=45.86 Aligned_cols=105 Identities=26% Similarity=0.351 Sum_probs=70.0
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCeEEEEEec---CCCCc-ceeEEEEEE--EecCCceEEEEEE
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGSVREVNVK---SGLPA-TTSTERLEL--LDDEEHILGIKIV 107 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~vR~~~~~---~g~p~-~~~~Erl~~--~D~~~~~~~Y~i~ 107 (186)
.|+||.|.||+.-+..+++...-|.-. +.+ +|+ +++..-.+.+. -|.|+ ..++-++++ +|+ ..+|+=.++
T Consensus 9 ~i~aP~E~VWafhsrpd~lq~LTppw~-VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~-~~~FtDv~i 85 (153)
T COG4276 9 TITAPHEMVWAFHSRPDALQRLTPPWI-VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN-GSRFTDVCI 85 (153)
T ss_pred EecCCHHHHhhhhcCccHHHhcCCCcE-EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC-cceeeeeee
Confidence 799999999999999888855544332 333 452 22332222221 22221 467788888 887 478888899
Q ss_pred cCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCC
Q 043944 108 GGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEG 146 (186)
Q Consensus 108 ~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g 146 (186)
.|++|..+...+-++.+.+ ++| ....+-.+++|.+
T Consensus 86 ~gPfp~~~WrHtH~F~~eg-g~T---vliD~Vsye~p~g 120 (153)
T COG4276 86 TGPFPALNWRHTHNFVDEG-GGT---VLIDSVSYELPAG 120 (153)
T ss_pred cCCccceeeEEEeeeecCC-CcE---EEEeeEEeeccCc
Confidence 9988877778889998887 564 5555566776655
No 45
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.49 E-value=0.014 Score=47.10 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=79.3
Q ss_pred eEecCCHHHHH-HHHhcCCCCCccCccceEEEE-c-cCCCCCeEEEEEecC-CCC---cceeEEEEEEEecCCceE-EEE
Q 043944 34 KHIRAPVHLVW-SLVRRFDQPQKYKPFVSRCVV-N-GDLGIGSVREVNVKS-GLP---ATTSTERLELLDDEEHIL-GIK 105 (186)
Q Consensus 34 ~~I~Ap~~~VW-~vl~Df~~~~~W~p~v~~~~~-~-G~~~vG~vR~~~~~~-g~p---~~~~~Erl~~~D~~~~~~-~Y~ 105 (186)
..|++|+++++ .++.|.++.++|.+.+.++++ + -+...=.++.+..+- +.+ .-.+.-+...-+.++..+ ..+
T Consensus 55 ~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~~~~~~s 134 (209)
T cd08905 55 VVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTCVLAGMA 134 (209)
T ss_pred EEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcEEEEEEe
Confidence 48999999999 777799999999999999875 3 121111133322211 111 112222222223322221 222
Q ss_pred EEcCCc-------cceeEEEEEEEEeccC-CCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 106 IVGGDH-------RLRNYSSIMTVHPEII-DGRPGTLVIESFVVDVPEGNTK-DETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 106 i~~g~~-------p~~~y~at~~v~p~~~-~gt~~t~v~w~~~~~~p~g~~~-~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
+.-... ...++.+-|.++|.++ .++ |.+.|....+| .|..+ ..+-.++...--..|.+|+++++.
T Consensus 135 ~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~--t~v~~~~~~Dp-kG~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 135 THFGLMPEQKGFIRAENGPTCIVLRPLAGDPSK--TKLTWLLSIDL-KGWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred ecCCCCCCCCCeEEEEeeccEEEEEECCCCCCc--eEEEEEEeecC-CCCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 211111 2456677899999863 244 67777667775 34433 445566677777888999998873
No 46
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.05 E-value=0.064 Score=43.34 Aligned_cols=133 Identities=17% Similarity=0.076 Sum_probs=69.9
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEE-cc-CCCCCeEEEEEecC--C--CCcceeEEEEEEEecCCceEEEEEEc
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NG-DLGIGSVREVNVKS--G--LPATTSTERLELLDDEEHILGIKIVG 108 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G-~~~vG~vR~~~~~~--g--~p~~~~~Erl~~~D~~~~~~~Y~i~~ 108 (186)
+|++|+++||++|.|....++|.+.+.++++ +- +....-.+..+-.. . .|.-.+.-+....+.+...+..+-+.
T Consensus 52 ~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~vi~~~SV~ 131 (205)
T cd08874 52 VIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSVVACQSVY 131 (205)
T ss_pred EEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEEEEEEecc
Confidence 7899999999999999999999999999987 42 22233344322101 1 11122222222223332223222222
Q ss_pred C-Cc--------cceeEEEEEEEEec---cCCCCCeEEEEEEEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043944 109 G-DH--------RLRNYSSIMTVHPE---IIDGRPGTLVIESFVVDVPE-GNTKDETCYFVQALIRCNLKSLADVS 171 (186)
Q Consensus 109 g-~~--------p~~~y~at~~v~p~---~~~gt~~t~v~w~~~~~~p~-g~~~~~~~~~~~~~~~~gL~~Lk~~~ 171 (186)
. .+ ....+.+-|.++|. +++.| .+......+| . |.....+.-.+-...-.++..|+..+
T Consensus 132 ~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t---~vty~~q~DP-ggg~iP~~l~N~~~~~~p~~~~~~~~~~ 203 (205)
T cd08874 132 DKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYT---RVIYIAQVAL-CGPDVPAQLLSSLSKRQPLVIARLALFL 203 (205)
T ss_pred cccCCCCCCCeEEeeeEeeeEEEEECccCCCCcE---EEEEEEEECC-CCCCCCHHHHhHHHHhccHHHHHHHHHh
Confidence 2 11 23456778999998 64444 4444445664 4 34443333333333334445554443
No 47
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.01 E-value=0.13 Score=41.49 Aligned_cols=135 Identities=13% Similarity=0.046 Sum_probs=72.6
Q ss_pred EecCCHHHHH-HHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEec-CCCCc---ceeEEEEEEEecCCc-eEEEE
Q 043944 35 HIRAPVHLVW-SLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVK-SGLPA---TTSTERLELLDDEEH-ILGIK 105 (186)
Q Consensus 35 ~I~Ap~~~VW-~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~-~g~p~---~~~~Erl~~~D~~~~-~~~Y~ 105 (186)
.+++|+++++ .++.|.+..++|.+.+.++++ + +++ .--++.+... .+.|. -.+.-+-..-+.+.. .+..+
T Consensus 56 ~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~-~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~s 134 (209)
T cd08906 56 FMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDN-TLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGIS 134 (209)
T ss_pred EEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCC-cEEEEEEccccccCCCCCCceEEEEEEEecCCcEEEEEEE
Confidence 7899999998 689999999999999999986 3 222 1112223222 11121 122223222233221 12233
Q ss_pred EEcCCcc-------ce-eEEEEEEEEe-ccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 106 IVGGDHR-------LR-NYSSIMTVHP-EIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 106 i~~g~~p-------~~-~y~at~~v~p-~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
+....+| .. ...+.+...+ .+ .++ |.+.|....+|-..+....+-.++....-.-|.+|+++++.
T Consensus 135 v~~~~~P~~~~~VR~~~~~~G~~i~~~~~~-~~~--t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 135 TTHSHKPPLSKYVRGENGPGGFVVLKSASN-PSV--CTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EecCCCCCCCCeEEEeeeccEEEEEECCCC-CCc--eEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3322222 22 2233444443 34 333 55565556675333333455566666667778999998865
No 48
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.96 E-value=0.035 Score=44.71 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=82.0
Q ss_pred CCCceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCeEEEEEecCCCCcceeEEEEE------EE
Q 043944 23 PRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGSVREVNVKSGLPATTSTERLE------LL 95 (186)
Q Consensus 23 ~~~~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~vR~~~~~~g~p~~~~~Erl~------~~ 95 (186)
+......--+...|++|++.+.+++.|.+.+++|.|.+.+++. +..+..-.+-.+.+..--| ..-++-+. .+
T Consensus 41 ~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~ 119 (215)
T cd08877 41 PDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWP-LSNREAVFRGFGVDRL 119 (215)
T ss_pred CCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceE-ecceEEEEEEEEEeee
Confidence 3433333334458999999999999999999999999887764 3211111222233321111 11122221 13
Q ss_pred ecCCceEEEEEEc--------------------CCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCC-CCHHHHHH
Q 043944 96 DDEEHILGIKIVG--------------------GDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEG-NTKDETCY 154 (186)
Q Consensus 96 D~~~~~~~Y~i~~--------------------g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g-~~~~~~~~ 154 (186)
++ +..+...+.. +......+.+-|.++|.+++.| .+......+|-.. +-...+-.
T Consensus 120 ~~-~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t---~v~~~~~~DP~g~~IP~~liN~ 195 (215)
T cd08877 120 EE-NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKC---YLRFVANVDPKMSLVPKSLLNF 195 (215)
T ss_pred cc-CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCe---EEEEEEEcCCCcccCCHHHHHH
Confidence 23 3333222111 1112346677899999985554 5554445664222 33455666
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 043944 155 FVQALIRCNLKSLADVSER 173 (186)
Q Consensus 155 ~~~~~~~~gL~~Lk~~~E~ 173 (186)
+...+....|.+|++.+++
T Consensus 196 ~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 196 VARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6677777888999988865
No 49
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.91 E-value=0.041 Score=42.35 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=39.6
Q ss_pred CHHHHHHHH-hcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEE
Q 043944 39 PVHLVWSLV-RRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGI 104 (186)
Q Consensus 39 p~~~VW~vl-~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y 104 (186)
..++||.-| ....+...|.|.|.+|++-.+....-.|.++|+ + ..++|++....+ .++.|
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R~v~fg-~---~~v~E~v~~~~~--~~V~f 79 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTREVTFG-G---ATVRERVTLYPP--ERVDF 79 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEEEEEET-T---EEEEEEEEEETT--TEEEE
T ss_pred CHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEEEEEEC-C---cEEEEEEEEeCC--cEEEE
Confidence 457899955 456666789999999998222234668999993 4 689999887644 57888
No 50
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=96.64 E-value=0.033 Score=44.94 Aligned_cols=139 Identities=11% Similarity=0.140 Sum_probs=84.5
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEEc--cCCCCCeEEEEEecCCCCc--ceeEEEEEEEecCCceEEEEE-EcC
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVN--GDLGIGSVREVNVKSGLPA--TTSTERLELLDDEEHILGIKI-VGG 109 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~--G~~~vG~vR~~~~~~g~p~--~~~~Erl~~~D~~~~~~~Y~i-~~g 109 (186)
.|..+++++++++++...|+++.|.++++.+. +.+ -+..-.+.+ |.|. ....-+++..++ .++|+. .+|
T Consensus 75 ligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~-~~~kA~LeV--GFk~l~E~y~S~Vt~~~p---~l~kt~~~d~ 148 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPS-GPLKADLEV--GFKPLDERYTSNVTCVKP---HLTKTVCADG 148 (227)
T ss_pred hhCCCHHHHHHHHHhHHHhhccccceeccceeecCCC-CCceeeEEe--cCcccchhheeeeEEecc---cceEEeeccc
Confidence 69999999999999999999999999999873 311 123333444 4321 123334444444 255544 445
Q ss_pred CccceeEEEEEEEEeccC-CCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 043944 110 DHRLRNYSSIMTVHPEII-DGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSERMAVQDRTEP 182 (186)
Q Consensus 110 ~~p~~~y~at~~v~p~~~-~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~~~~~~~~~~ 182 (186)
.+ +.+....|++.|..+ .++ +.+...-.|+...-+-...+..+.+...+...++..+++.+.....+-.|
T Consensus 149 rL-F~~L~t~Wsf~pg~~~p~t--c~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~~i~ 219 (227)
T KOG3177|consen 149 RL-FNHLITIWSFKPGPNIPRT--CTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPESLIP 219 (227)
T ss_pred cH-HHhhhheeeeccCCCCCCe--EEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccCc
Confidence 33 445567899998762 333 34443334442222333445666677777777888888877766554433
No 51
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.63 E-value=0.26 Score=39.39 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=78.4
Q ss_pred CCCCceEEEEEEeEecCCHHHHHH-HHhcCCCCCccCccceEEEE-cc-CCCCCeEEEEEecC-CCC---cceeEEEEEE
Q 043944 22 EPRENQCTSALVKHIRAPVHLVWS-LVRRFDQPQKYKPFVSRCVV-NG-DLGIGSVREVNVKS-GLP---ATTSTERLEL 94 (186)
Q Consensus 22 ~~~~~~v~~sv~~~I~Ap~~~VW~-vl~Df~~~~~W~p~v~~~~~-~G-~~~vG~vR~~~~~~-g~p---~~~~~Erl~~ 94 (186)
.|...++-.. +..|++|+++|+. ++.|.+..++|.+.+.++++ +. ++..--+..+.... +.| .-.+.-|...
T Consensus 43 ~~~~~~~~k~-~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~ 121 (208)
T cd08868 43 VPGVGKVFRL-TGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWG 121 (208)
T ss_pred cCCCceEEEE-EEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEE
Confidence 3444443332 2479999999986 56799999999999988875 32 21111122222111 111 1122222222
Q ss_pred EecCCceEEEEEEc-CCc-------cceeEEEEEEEEeccCC-CCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHH
Q 043944 95 LDDEEHILGIKIVG-GDH-------RLRNYSSIMTVHPEIID-GRPGTLVIESFVVDVPEGNTK-DETCYFVQALIRCNL 164 (186)
Q Consensus 95 ~D~~~~~~~Y~i~~-g~~-------p~~~y~at~~v~p~~~~-gt~~t~v~w~~~~~~p~g~~~-~~~~~~~~~~~~~gL 164 (186)
.++....+...-++ ... ....+.+.+.++|.+++ ++ |.+.+....+| .|... ..+-.++....-..+
T Consensus 122 ~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~--t~v~~~~~~Dp-~G~iP~~lvN~~~~~~~~~~~ 198 (208)
T cd08868 122 IRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNK--CNFTWLLNTDL-KGWLPQYLVDQALASVLLDFM 198 (208)
T ss_pred ecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCc--eEEEEEEEECC-CCCCcceeeehhhHHHHHHHH
Confidence 33322222222222 111 23455678999998632 23 56666666674 33333 223344455566778
Q ss_pred HHHHHHHhhh
Q 043944 165 KSLADVSERM 174 (186)
Q Consensus 165 ~~Lk~~~E~~ 174 (186)
++|+++++++
T Consensus 199 ~~Lr~~~~~~ 208 (208)
T cd08868 199 KHLRKRIATL 208 (208)
T ss_pred HHHHHHHhhC
Confidence 8999888763
No 52
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.42 E-value=0.29 Score=37.62 Aligned_cols=132 Identities=20% Similarity=0.152 Sum_probs=67.6
Q ss_pred eEecCCHHHHHHHHhcCCCCC---ccCc----cceEEEEccCCCCCeEEEE-Eec-CCCCc--------ceeEEEEEEE-
Q 043944 34 KHIRAPVHLVWSLVRRFDQPQ---KYKP----FVSRCVVNGDLGIGSVREV-NVK-SGLPA--------TTSTERLELL- 95 (186)
Q Consensus 34 ~~I~Ap~~~VW~vl~Df~~~~---~W~p----~v~~~~~~G~~~vG~vR~~-~~~-~g~p~--------~~~~Erl~~~- 95 (186)
..+++|+++||+++.|-.=+. +-.. .+.+++.+|++ . .++.. .+. +..|. ....++...+
T Consensus 5 ~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~-~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w~ 82 (159)
T PF10698_consen 5 VEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-V-RVTVRQTVPADKLPSAARKFVGGDLRVTRTETWT 82 (159)
T ss_pred EEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-E-EEEEEEecChhhCCHHHHHhcCCCeEEEEEEEEe
Confidence 489999999999998653321 1111 23333434433 1 11111 121 22230 1222233445
Q ss_pred --ecCCceEEEEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 96 --DDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 96 --D~~~~~~~Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
++..+..+|++.-...|+ ...++++|.|.+ +|| .......+.+.-.+....+.+++...+...|+...+..+
T Consensus 83 ~~~~g~~~g~~~~~~~G~P~-~~~G~~~L~~~~-~gt---~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~~ 156 (159)
T PF10698_consen 83 PLDDGRRTGTFTVSIPGAPV-SISGTMRLRPDG-GGT---RLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFTA 156 (159)
T ss_pred cCCCCeEEEEEEEEecCceE-EEEEEEEEecCC-CCE---EEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777765444455 579999999966 666 233333343211133445555555666666655555443
No 53
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.13 E-value=0.55 Score=37.89 Aligned_cols=137 Identities=11% Similarity=0.008 Sum_probs=74.2
Q ss_pred Ee-cCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCeEEEEEecCCCCc---ceeEEEEEEEecCCceE-EEEEEc
Q 043944 35 HI-RAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGSVREVNVKSGLPA---TTSTERLELLDDEEHIL-GIKIVG 108 (186)
Q Consensus 35 ~I-~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~vR~~~~~~g~p~---~~~~Erl~~~D~~~~~~-~Y~i~~ 108 (186)
++ ++|++.+++++.|....++|.+.+..+++ +--+.--.+....+....|. ..+.-+...-++....+ ..++..
T Consensus 54 ~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi~~~sv~~ 133 (222)
T cd08871 54 IFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYIIFNHSVKH 133 (222)
T ss_pred EeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEEEeccccC
Confidence 44 79999999999999888999999988865 32110112323333222121 12222222222211111 112221
Q ss_pred CCc-------cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHhhhh
Q 043944 109 GDH-------RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKD-ETCYFVQALIRCNLKSLADVSERMA 175 (186)
Q Consensus 109 g~~-------p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~-~~~~~~~~~~~~gL~~Lk~~~E~~~ 175 (186)
... ....+.+-+.++|.++++| .+.+....+| .|.... .+-.++....-..|++|++.+++-.
T Consensus 134 ~~~P~~~g~VR~~~~~~g~~i~p~~~~~t---~vt~~~~~Dp-~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 134 KKYPPRKGFVRAISLLTGYLIRPTGPKGC---TLTYVTQNDP-KGSLPKWVVNKATTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred CCCCCCCCeEEeEEEccEEEEEECCCCCE---EEEEEEecCC-CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 112 2234566788999875554 5555555664 444333 3445555556677888888887643
No 54
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.02 E-value=0.57 Score=38.73 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=57.9
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecC---CCCcceeEEEEEE--EecCC-ceEEEE
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKS---GLPATTSTERLEL--LDDEE-HILGIK 105 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~---g~p~~~~~Erl~~--~D~~~-~~~~Y~ 105 (186)
.+++|+++++++|.|....++|.+.+.++++ + +++ .+-.+. .+.. -.|.-.+.-+-.. .+... ..+...
T Consensus 84 ~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d-~~iyy~-~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~ 161 (235)
T cd08873 84 KVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED-DGIYHT-TMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFR 161 (235)
T ss_pred EecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC-cEEEEE-EcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEe
Confidence 6899999999999999999999999999986 3 332 333332 2221 1111122211111 12211 222332
Q ss_pred EEc-CC-------ccceeEEEEEEEEeccCCCCCeEEEE
Q 043944 106 IVG-GD-------HRLRNYSSIMTVHPEIIDGRPGTLVI 136 (186)
Q Consensus 106 i~~-g~-------~p~~~y~at~~v~p~~~~gt~~t~v~ 136 (186)
-+. .. .....+.+-|.+.|.++++|++|+..
T Consensus 162 SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~ 200 (235)
T cd08873 162 SVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYN 200 (235)
T ss_pred eeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEE
Confidence 222 11 13567788999999986666555444
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=96.01 E-value=0.62 Score=37.38 Aligned_cols=135 Identities=15% Similarity=0.165 Sum_probs=78.2
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCe-EEEEEecCCCCc---ceeEEEEEEEecCCceE---EEEE
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGS-VREVNVKSGLPA---TTSTERLELLDDEEHIL---GIKI 106 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~-vR~~~~~~g~p~---~~~~Erl~~~D~~~~~~---~Y~i 106 (186)
..++|++.+.+++.|.+..++|.+.+.++++ +-+...+. +-.+.+....|. -.+.-+-...|+++..+ .+++
T Consensus 53 ~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv 132 (207)
T cd08911 53 FDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAV 132 (207)
T ss_pred EcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecC
Confidence 3499999999999999999999999988876 42221222 222333222221 23334444455544332 2222
Q ss_pred Ec-------CCccceeEEEEEEEEecc---CCCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 107 VG-------GDHRLRNYSSIMTVHPEI---IDGRPGTLVIESFVVDVPEGNTK-DETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 107 ~~-------g~~p~~~y~at~~v~p~~---~~gt~~t~v~w~~~~~~p~g~~~-~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
.. |-..+..|.+.+.+.|.+ ++|++ +...+..+ |.|... ..+-.+.....-.-|++|++.+.+
T Consensus 133 ~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~---~~~~~~~d-PgG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 133 QHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFE---FVLTYFDN-PGVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred CCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeE---EEEEEEeC-CCCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 21 112456788999999873 35552 23333345 344433 345556666667778888887753
No 56
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.83 E-value=0.76 Score=36.94 Aligned_cols=136 Identities=14% Similarity=0.057 Sum_probs=70.8
Q ss_pred eEecCCHHHHHHHHhcCCCC--CccCccceEEEE-cc-CCCCCeEEEEEec-C-CC---CcceeEEE-EEEEecCCceEE
Q 043944 34 KHIRAPVHLVWSLVRRFDQP--QKYKPFVSRCVV-NG-DLGIGSVREVNVK-S-GL---PATTSTER-LELLDDEEHILG 103 (186)
Q Consensus 34 ~~I~Ap~~~VW~vl~Df~~~--~~W~p~v~~~~~-~G-~~~vG~vR~~~~~-~-g~---p~~~~~Er-l~~~D~~~~~~~ 103 (186)
..|+++++++++++.|..+. ++|.+.+.++++ +- +....-++. ..+ . +. |.-.+.-+ ....++....+.
T Consensus 52 ~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~ 130 (208)
T cd08903 52 GIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDGTISSN 130 (208)
T ss_pred EEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCceEEEe
Confidence 48999999999999988765 799999999986 31 222222332 221 0 10 11122222 222333222223
Q ss_pred EEEEcC-Ccc-ce------eEEEEEEEEec--cCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 104 IKIVGG-DHR-LR------NYSSIMTVHPE--IIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 104 Y~i~~g-~~p-~~------~y~at~~v~p~--~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
+..++. ..| -. .+.+-+.+.+. ++++ |.+.|....+|-..+-...+-.++......-|++|++.+.+
T Consensus 131 ~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~---t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 131 ATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDK---TQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCc---eEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 322332 112 11 22123344444 4333 56666666775333333445566656666788999988865
No 57
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=95.79 E-value=0.25 Score=40.88 Aligned_cols=31 Identities=6% Similarity=0.247 Sum_probs=29.8
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV 65 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~ 65 (186)
.+++|+++++++|.|....++|.+.+.+|++
T Consensus 88 ~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~v 118 (240)
T cd08913 88 VVHVDAAQAFLLLSDLRRRPEWDKHYRSCEL 118 (240)
T ss_pred EEcCCHHHHHHHHhChhhhhhhHhhccEEEE
Confidence 7899999999999999999999999999986
No 58
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=95.25 E-value=1.2 Score=35.47 Aligned_cols=134 Identities=10% Similarity=-0.093 Sum_probs=71.4
Q ss_pred EecCCHHHHHHHHhc--CCCCCccCccceEEEE-ccCCCCCe-EEEEEecC-CCC----ccee-EEEEEEEecCCceEEE
Q 043944 35 HIRAPVHLVWSLVRR--FDQPQKYKPFVSRCVV-NGDLGIGS-VREVNVKS-GLP----ATTS-TERLELLDDEEHILGI 104 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~D--f~~~~~W~p~v~~~~~-~G~~~vG~-vR~~~~~~-g~p----~~~~-~Erl~~~D~~~~~~~Y 104 (186)
.|++++++|.+++.| .....+|.+.+.++++ +.-+ ..+ +-....+. +.+ .-.+ ......+++....+..
T Consensus 53 ~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id-~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~ 131 (206)
T cd08867 53 IVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKIS-EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSG 131 (206)
T ss_pred EEcCCHHHHHHHHHhcCccccccccccccceEEEEEeC-CCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEE
Confidence 889999999999998 6777899999999876 4211 111 12222211 000 0111 1212333332222232
Q ss_pred EEEcCC--cc------ceeEEEEEEEEeccC-CCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043944 105 KIVGGD--HR------LRNYSSIMTVHPEII-DGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVS 171 (186)
Q Consensus 105 ~i~~g~--~p------~~~y~at~~v~p~~~-~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~ 171 (186)
.-++-+ +| ...+.+-+.+.|..+ .+. |.+.|....+|...+....+-.++......-+++|++++
T Consensus 132 ~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~--t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 132 KSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK--SFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc--eEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 333211 12 233445567777642 233 566666667753333344455566666677778888765
No 59
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.21 E-value=1 Score=34.43 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=31.6
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV 65 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~ 65 (186)
.+.... +|++|+++||+++.|....++|.+.+.++++
T Consensus 40 ~~k~~~--~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~v 76 (193)
T cd00177 40 LLKAEG--VIPASPEQVFELLMDIDLRKKWDKNFEEFEV 76 (193)
T ss_pred eEEEEE--EECCCHHHHHHHHhCCchhhchhhcceEEEE
Confidence 344444 8999999999999999999999999988876
No 60
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=95.14 E-value=1.3 Score=35.23 Aligned_cols=129 Identities=17% Similarity=0.038 Sum_probs=70.1
Q ss_pred EecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecCCCCc---ceeEEEEEEEecCCc--eEEEEE
Q 043944 35 HIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKSGLPA---TTSTERLELLDDEEH--ILGIKI 106 (186)
Q Consensus 35 ~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~g~p~---~~~~Erl~~~D~~~~--~~~Y~i 106 (186)
+|++++++|+..+-|.. ++|.+.+.++++ + +++ . .+-...+..-.|. -.+.-|....+.++. .+...-
T Consensus 51 ~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~-~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~S 126 (197)
T cd08869 51 EVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDED-T-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETS 126 (197)
T ss_pred EeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCC-c-EEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEEC
Confidence 89999999999887753 799999999976 3 222 1 1222222211121 122222223223222 222322
Q ss_pred EcC--Cc-----cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043944 107 VGG--DH-----RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVS 171 (186)
Q Consensus 107 ~~g--~~-----p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~ 171 (186)
++. .. ....+.+-|.++|.++++| .+.+....+| .|.....+...........|++|++-+
T Consensus 127 v~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t---~vty~~~~Dp-~G~iP~wl~N~~~~~~~~~~~~l~~~~ 194 (197)
T cd08869 127 VEHTEPVPLGGVRAVVLASRYLIEPCGSGKS---RVTHICRVDL-RGRSPEWYNKVYGHLCARELLRIRDSF 194 (197)
T ss_pred CcCCCCCCCCCEEEEEEeeeEEEEECCCCCe---EEEEEEEECC-CCCCCceeecchHhHHHHHHHHHHhhc
Confidence 321 11 1345567899999985555 4444445674 455554445555566667777777654
No 61
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=94.88 E-value=1.3 Score=33.82 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=46.6
Q ss_pred CHHHHHHH-HhcCCCCCccCccceEEEE-ccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEEc
Q 043944 39 PVHLVWSL-VRRFDQPQKYKPFVSRCVV-NGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVG 108 (186)
Q Consensus 39 p~~~VW~v-l~Df~~~~~W~p~v~~~~~-~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~~ 108 (186)
..+++|.- +..-.+...+.|.+.+|++ +.++ --..|.++|+. ..++|+++...+ .++.|.+..
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~-~~l~Rel~f~~----~~v~e~vt~~~~--~~v~f~~~~ 82 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVPGLDRCEVLSESG-TVLERELTFGP----AKIRETVTLEPP--SRVHFLQAD 82 (141)
T ss_pred CHHHHHhHHHhhhCCchhcccccceEEEEecCC-CEEEEEEEECC----ceEEEEEEecCC--cEEEEEecC
Confidence 46799995 4567777789999999997 4222 23579999963 479999876643 689998865
No 62
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=94.42 E-value=2.1 Score=34.25 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=73.7
Q ss_pred Ee-cCCHHHHHHHHhcCCCCCccCccceEEEE-ccCCCCCe-EEEEEecCCCCc---ceeEEEEEEEe-cCCceEEEEEE
Q 043944 35 HI-RAPVHLVWSLVRRFDQPQKYKPFVSRCVV-NGDLGIGS-VREVNVKSGLPA---TTSTERLELLD-DEEHILGIKIV 107 (186)
Q Consensus 35 ~I-~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~G~~~vG~-vR~~~~~~g~p~---~~~~Erl~~~D-~~~~~~~Y~i~ 107 (186)
++ ++|++.+.+++.|....++|.+.+.++++ +-+...|. +-.+.+..-.|. -.+.-+-...| +....+....+
T Consensus 57 ~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv 136 (209)
T cd08870 57 VFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVTKGV 136 (209)
T ss_pred EEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEEeCC
Confidence 56 77999999999999999999999888875 32211122 112222211121 12222222233 22222222222
Q ss_pred c-------CCccceeEEEEEEEEec--cCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 108 G-------GDHRLRNYSSIMTVHPE--IIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 108 ~-------g~~p~~~y~at~~v~p~--~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
. |-..+..|.+.+.+.|. +++++ -+..++..+|-..+-...+-.++....-..|++|++.+.
T Consensus 137 ~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t---~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 137 PYPSVPRSGRKRVDDYESSLVIRAVKGDGQGS---ACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred cCCCCCCCCcEEEEEEEeEEEEEEecCCCCce---EEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 2 12235688899999998 54444 444444445423333344556666666677788877764
No 63
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.41 E-value=1.9 Score=33.80 Aligned_cols=136 Identities=12% Similarity=-0.059 Sum_probs=73.2
Q ss_pred eEecCCHHHHH-HHHhcCCCCCccCccceEEEE-cc-CCCCCeEEEEEecCCC-Cc---ceeEEEEEEEec-CCceEEEE
Q 043944 34 KHIRAPVHLVW-SLVRRFDQPQKYKPFVSRCVV-NG-DLGIGSVREVNVKSGL-PA---TTSTERLELLDD-EEHILGIK 105 (186)
Q Consensus 34 ~~I~Ap~~~VW-~vl~Df~~~~~W~p~v~~~~~-~G-~~~vG~vR~~~~~~g~-p~---~~~~Erl~~~D~-~~~~~~Y~ 105 (186)
..|+++++++. .++.|....++|.+.+.++++ +- +.+ ..+.......-. |. ..+.-+-...++ ....+...
T Consensus 51 ~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~ 129 (206)
T smart00234 51 GVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDV 129 (206)
T ss_pred EEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEE
Confidence 37888998744 688899999999999988875 31 211 234433332121 21 112122122222 22233332
Q ss_pred EEcCC-c-------cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043944 106 IVGGD-H-------RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNT-KDETCYFVQALIRCNLKSLADVSERM 174 (186)
Q Consensus 106 i~~g~-~-------p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~-~~~~~~~~~~~~~~gL~~Lk~~~E~~ 174 (186)
-++.+ . ....+.+-+.+.|.+++.| .+.+....++ .|.. ...+..++....-..+++|++.+.+.
T Consensus 130 Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t---~vt~~~~~D~-~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 130 SVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPS---KVTWVSHADL-KGWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred ECCCCCCCCCCCceEEEEeceEEEEEECCCCCe---EEEEEEEEec-CCCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 22211 1 2345677899999985544 5555555664 3332 23344555556666677777776653
No 64
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=94.40 E-value=2.2 Score=34.44 Aligned_cols=135 Identities=9% Similarity=-0.025 Sum_probs=76.9
Q ss_pred EEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecCCCC---cceeEEEEEEEecCCce
Q 043944 28 CTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKSGLP---ATTSTERLELLDDEEHI 101 (186)
Q Consensus 28 v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~g~p---~~~~~Erl~~~D~~~~~ 101 (186)
...++ +|++++++|...+-|- .+.|.+.+.++.+ + +++. .+-...+..--| ...+.-|.-..+..+..
T Consensus 54 ~r~~~--~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~--~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~ 127 (204)
T cd08908 54 WRTTI--EVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQT--EIYQYVQNSMAPHPARDYVVLRTWRTNLPKGA 127 (204)
T ss_pred EEEEE--EeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCc--eEEEEEccCCCCCCCcEEEEEEEEEEeCCCCe
Confidence 45555 8999999999998777 6799998888765 3 2211 111111111111 11222223233333333
Q ss_pred EEEEEE---cCCcc-----ceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 043944 102 LGIKIV---GGDHR-----LRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 102 ~~Y~i~---~g~~p-----~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
+...+. ....| +..+.+.+.++|.++++|++|++ ...+ |.|..........+.+...-|..|++-+.
T Consensus 128 ~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi---~~~D-PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 128 CALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYM---CRID-LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred EEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEE---EEeC-CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 332222 11122 34567789999998666644443 4567 46666666777777777777777776553
No 65
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=93.88 E-value=2.7 Score=34.81 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=32.5
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV 65 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~ 65 (186)
.+.... .+++|++++.++|.|..+.++|.+.+.++++
T Consensus 79 ~fk~e~--~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~v 115 (236)
T cd08914 79 SVWVEK--HVKRPAHLAYRLLSDFTKRPLWDPHFLSCEV 115 (236)
T ss_pred EEEEEE--EEcCCHHHHHHHHhChhhhchhHHhhceEEE
Confidence 344444 7899999999999999999999999999986
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=92.48 E-value=4.7 Score=32.32 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=72.7
Q ss_pred Eec-CCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCe-EEEEEecCCCCc---cee-EEEEEEEecCCceEEE---E
Q 043944 35 HIR-APVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGS-VREVNVKSGLPA---TTS-TERLELLDDEEHILGI---K 105 (186)
Q Consensus 35 ~I~-Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~-vR~~~~~~g~p~---~~~-~Erl~~~D~~~~~~~Y---~ 105 (186)
+++ ++++.+.+++.|.+..++|.+.+.++.-..+. |. +-.+.++..-|. -.+ .-+...+|.+...+-. .
T Consensus 56 ~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~--~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~ 133 (207)
T cd08910 56 VLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECD--GETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEGRKIWVILAR 133 (207)
T ss_pred EEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCC--CCEEEEEEEEcCCCCCCceEEEEEEeccccCCCCeEEEEEec
Confidence 566 79999999999999999999987664221111 22 222333212111 111 1112233433332111 1
Q ss_pred EEc--------CCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHh
Q 043944 106 IVG--------GDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTK-DETCYFVQALIRCNLKSLADVSE 172 (186)
Q Consensus 106 i~~--------g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~-~~~~~~~~~~~~~gL~~Lk~~~E 172 (186)
.++ |-..+..|.+.+.++|.++++| .+......+| .|... ..+-.+.....-..|++|++.+.
T Consensus 134 s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t---~i~~~~~~DP-gG~IP~wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 134 STSLPQLPEKPGVIRVKQYKQSLAIESDGKKGS---KVFMYYFDNP-GGMIPSWLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCce---EEEEEEEeCC-CCcchHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 111 1124568899999999875665 3333444564 44434 34555556666777788887764
No 67
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=92.25 E-value=5.1 Score=32.26 Aligned_cols=142 Identities=6% Similarity=-0.076 Sum_probs=75.4
Q ss_pred CceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecC-CC----CcceeEEEEE-EE
Q 043944 25 ENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKS-GL----PATTSTERLE-LL 95 (186)
Q Consensus 25 ~~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~-g~----p~~~~~Erl~-~~ 95 (186)
.+++... +.+|+++++++|+++.+-..-.+|.+.+.++++ + +++. .+-.....+ +. |.-.+--|.. .+
T Consensus 44 ~gkl~k~-egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~~r~ 120 (204)
T cd08904 44 HGNLYRV-EGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHIKRY 120 (204)
T ss_pred CceEEEE-EEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEEEEe
Confidence 3454443 358999999999999987777899999988875 3 2221 111111111 11 1122222221 23
Q ss_pred ecCCceEEEEEEcCCc--c------ceeEEEEEEEEeccCC-CCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Q 043944 96 DDEEHILGIKIVGGDH--R------LRNYSSIMTVHPEIID-GRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKS 166 (186)
Q Consensus 96 D~~~~~~~Y~i~~g~~--p------~~~y~at~~v~p~~~~-gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~ 166 (186)
+.....+.+..++-+- | ..++.+=+-+.|..++ +. |...|....++...+....+-.++...+-..+.+
T Consensus 121 ~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~--t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~ 198 (204)
T cd08904 121 EGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAY--SKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILD 198 (204)
T ss_pred CCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCc--eEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHH
Confidence 4332222333333221 2 2233445788888643 22 3445555567533333445666666666677777
Q ss_pred HHHHH
Q 043944 167 LADVS 171 (186)
Q Consensus 167 Lk~~~ 171 (186)
|++.+
T Consensus 199 ~~~~~ 203 (204)
T cd08904 199 AKDGI 203 (204)
T ss_pred HHHhc
Confidence 77764
No 68
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=85.17 E-value=18 Score=29.19 Aligned_cols=144 Identities=10% Similarity=-0.029 Sum_probs=76.8
Q ss_pred CCCceEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecCCC----CcceeEEE-EEE
Q 043944 23 PRENQCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKSGL----PATTSTER-LEL 94 (186)
Q Consensus 23 ~~~~~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~g~----p~~~~~Er-l~~ 94 (186)
...+++... ...|+..+++||+.+.+-..-.+|.+.+.+|++ + +++ .--.|.++.+... |...+-=+ ...
T Consensus 43 ef~gkl~R~-Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~d-t~I~~yvt~~~~~~iISpRDFVdv~~~~~ 120 (202)
T cd08902 43 EFGGYLYKA-QGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEEN-CCVMRYTTAGQLLNIISPREFVDFSYTTQ 120 (202)
T ss_pred cCCCceEEE-EEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCC-cEEEEEEcccCCcCccCccceEEEEEEEE
Confidence 444554443 346899999999999987667799999999986 4 333 1112444433221 11111111 112
Q ss_pred EecCCceEEE--EEEcCCcc--c---eeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Q 043944 95 LDDEEHILGI--KIVGGDHR--L---RNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSL 167 (186)
Q Consensus 95 ~D~~~~~~~Y--~i~~g~~p--~---~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~L 167 (186)
..+ ++ ++- ++.-...| + .++-+-|-+.|..++-++ |...|....++...+....+-.+|....-..+.+|
T Consensus 121 ~~d-~~-~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k-~~~t~~lq~DLkG~LPqsiIdq~~~~~~~~F~~~L 197 (202)
T cd08902 121 YED-GL-LSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSH-SLLTGYIQTDLRGMLPQSAVDTAMASTLVNFYSDL 197 (202)
T ss_pred eCC-Ce-EEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCc-eEEEEEEEecCCCCccHHHHHHHhhHHHHHHHHHH
Confidence 222 22 222 22111122 1 233445788898744343 55566666775333333445556666666666778
Q ss_pred HHHH
Q 043944 168 ADVS 171 (186)
Q Consensus 168 k~~~ 171 (186)
++++
T Consensus 198 rk~~ 201 (202)
T cd08902 198 KKAL 201 (202)
T ss_pred HHhc
Confidence 7765
No 69
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=70.04 E-value=49 Score=25.60 Aligned_cols=133 Identities=14% Similarity=0.016 Sum_probs=74.5
Q ss_pred eEecCCHHHHHHHHhcCCCCCccCccceEEEE-c--cCCCCCeEEEEEecCCC--CcceeEEEE----EEEecCC-ceEE
Q 043944 34 KHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N--GDLGIGSVREVNVKSGL--PATTSTERL----ELLDDEE-HILG 103 (186)
Q Consensus 34 ~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~--G~~~vG~vR~~~~~~g~--p~~~~~Erl----~~~D~~~-~~~~ 103 (186)
..|+++++++...+.+-.. .|.+.+.++++ + .++ ..+..+.+.... |... +|=+ ...+.++ ..+.
T Consensus 52 ~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~ 126 (206)
T PF01852_consen 52 GVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIV 126 (206)
T ss_dssp EEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEE
T ss_pred EEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEE
Confidence 3899999977777665444 89999988875 3 222 344444333222 3222 3322 1222322 2333
Q ss_pred EE-EEcCCc--------cceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 043944 104 IK-IVGGDH--------RLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTK-DETCYFVQALIRCNLKSLADVSER 173 (186)
Q Consensus 104 Y~-i~~g~~--------p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~-~~~~~~~~~~~~~gL~~Lk~~~E~ 173 (186)
.+ +..... ....+.+-+.++|.+++.| .+.+....++ .|... ..+..++....-..++.|.+.+++
T Consensus 127 ~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~---~vt~~~~~D~-~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~ 202 (206)
T PF01852_consen 127 SRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRT---RVTYVSQVDP-KGWIPSWLVNMVVKSQPPNFLKNLRKALKK 202 (206)
T ss_dssp EEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEE---EEEEEEEEES-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeeccccccccccCcceeeeeeEeEEEEEccCCCc---eEEEEEEECC-CCCChHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 32 322222 2245667899999984444 4555556674 45544 335555666667777888888876
Q ss_pred hh
Q 043944 174 MA 175 (186)
Q Consensus 174 ~~ 175 (186)
..
T Consensus 203 ~~ 204 (206)
T PF01852_consen 203 QK 204 (206)
T ss_dssp CC
T ss_pred hc
Confidence 43
No 70
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=66.87 E-value=47 Score=24.21 Aligned_cols=94 Identities=6% Similarity=-0.009 Sum_probs=55.8
Q ss_pred EeEecCCHHHHHHHHhcCCCCCccCccceEEE---E-ccCCCCCeEEEEEecCCCCcceeEEEEEEEecCCceEEEEEEc
Q 043944 33 VKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCV---V-NGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIKIVG 108 (186)
Q Consensus 33 ~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~---~-~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~~~~~Y~i~~ 108 (186)
+..+++|++.+++.|-+--- ..|.... + .... .|..-.-.+..+ ...+=+|+++.+ ++.+.+....
T Consensus 4 ~~~l~v~a~~ff~~l~~s~~-----~DI~~~tgk~~~~~~L-~G~~Y~K~~~~~---~~~~v~It~~~~-~~~Y~~~~~s 73 (120)
T PF11687_consen 4 SKTLNVSAEEFFDYLIDSLL-----YDIKQATGKKLPVKQL-KGFSYQKKFKNK---REAKVKITEYEP-NKRYAATFSS 73 (120)
T ss_pred EEEecCCHHHHHHHHHHHHH-----HHHHHHcCCCCChhhc-CCcEEEEEcCCC---CEEEEEEEEEcC-CCEEEEEEEe
Confidence 44689999999998763211 1111111 0 0112 454444444444 356667899987 5788888865
Q ss_pred CCccceeEEEEEEEEeccCCCCCeEEEEEEEEEe
Q 043944 109 GDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVD 142 (186)
Q Consensus 109 g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~ 142 (186)
+...+..+.++.|.+++.+ -+..++.+.
T Consensus 74 ---~~~~~~i~Y~i~~~~~~~~---~v~y~E~~~ 101 (120)
T PF11687_consen 74 ---SRGTFTISYEIEPLDDGSI---EVTYEEEYE 101 (120)
T ss_pred ---cCCCEEEEEEEEECCCCcE---EEEEEEEEc
Confidence 3345777899999984434 444455554
No 71
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=62.61 E-value=81 Score=25.44 Aligned_cols=135 Identities=13% Similarity=0.011 Sum_probs=73.2
Q ss_pred eEEEEEEeEecCCHHHHHHHHhcCCCCCccCccceEEEE-c-cC--CCCCeEEEEEecCCCC---cceeEEEEEEEec-C
Q 043944 27 QCTSALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVV-N-GD--LGIGSVREVNVKSGLP---ATTSTERLELLDD-E 98 (186)
Q Consensus 27 ~v~~sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~-~-G~--~~vG~vR~~~~~~g~p---~~~~~Erl~~~D~-~ 98 (186)
....++ .|++|+++|-..+-+ .-++|-..+.+.++ + -+ ..++. ..+..-.| ...+.-|--..|. .
T Consensus 53 ~~r~~~--ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~---y~~~~~~P~~~RD~v~~R~w~~~~~~ 125 (205)
T cd08909 53 LWKVSV--EVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQ---YVLNCMAPHPSRDFVVLRSWRTDLPK 125 (205)
T ss_pred EEEEEE--EeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEE---EEeecCCCCCCCEEEEEEEEEEeCCC
Confidence 345555 899999999887765 46789887776654 2 22 22222 22221111 1222223222232 2
Q ss_pred C-ceEEEEEEcCC-cc------ceeEEEEEEEEeccCCCCCeEEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043944 99 E-HILGIKIVGGD-HR------LRNYSSIMTVHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVQALIRCNLKSLADV 170 (186)
Q Consensus 99 ~-~~~~Y~i~~g~-~p------~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p~g~~~~~~~~~~~~~~~~gL~~Lk~~ 170 (186)
+ ..+.+.-++.+ .| ...+.+-+.++|.++++| .+.+-...|+ .|-...-....++-+...-|..|++-
T Consensus 126 G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~t---rvt~i~~vDp-kG~~P~W~~n~~g~~~~~~~~~~r~s 201 (205)
T cd08909 126 GACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKS---RLTHICRVDL-KGHSPEWYNKGFGHLCAAEAARIRNS 201 (205)
T ss_pred CcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCE---EEEEEEEecC-CCCChHHHHHhHHHHHHHHHHHHHhh
Confidence 2 12222222221 11 223455688999985444 5555556774 67777667777777777777777765
Q ss_pred Hh
Q 043944 171 SE 172 (186)
Q Consensus 171 ~E 172 (186)
+.
T Consensus 202 f~ 203 (205)
T cd08909 202 FQ 203 (205)
T ss_pred cc
Confidence 43
No 72
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=61.10 E-value=56 Score=23.11 Aligned_cols=81 Identities=12% Similarity=-0.147 Sum_probs=45.7
Q ss_pred eeEEEEEEEecCCceEEEEEEcCCccceeEEEEEEEEeccCCCCCeEEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHHH
Q 043944 87 TSTERLELLDDEEHILGIKIVGGDHRLRNYSSIMTVHPEIIDGRPGTLVIESFVVDVP--EGNTKDETCYFVQALIRCNL 164 (186)
Q Consensus 87 ~~~Erl~~~D~~~~~~~Y~i~~g~~p~~~y~at~~v~p~~~~gt~~t~v~w~~~~~~p--~g~~~~~~~~~~~~~~~~gL 164 (186)
.++-++..+.| .+.++|.---....+-+-.-++.+++.. ++. |.+..+..|.+. +.. . .+..-+...|...=
T Consensus 10 ~~~P~il~~~P-~reL~W~~~~~~~~l~~~~~~~~le~~~-~~~--t~~~q~e~F~Gvlv~fv-~-~lr~~~~~~f~~~n 83 (93)
T COG4891 10 KIRPVILGLEP-LRELTWLGNVRFPGLLDGERYFELEALW-GGR--TRFAQGESFSGVLVPFV-S-ELRRGLTASFENMN 83 (93)
T ss_pred EEeeEEEeccc-chheeeecccccceEEeeEEEEEEeecC-Ccc--ceeeccceecceeeccc-h-hhhccchhhhhhhC
Confidence 45556777777 5889997543333344556679999997 443 445555566421 111 1 13333444444444
Q ss_pred HHHHHHHhh
Q 043944 165 KSLADVSER 173 (186)
Q Consensus 165 ~~Lk~~~E~ 173 (186)
.+|++++|+
T Consensus 84 ~alr~raE~ 92 (93)
T COG4891 84 PALRARAEA 92 (93)
T ss_pred HHHHhhhhc
Confidence 667777765
No 73
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.09 E-value=1.2e+02 Score=26.09 Aligned_cols=91 Identities=9% Similarity=0.089 Sum_probs=52.9
Q ss_pred EEEeEecCCHHHHHHHHhcCCCCCccCccceEEEEccCCCCCeEEEEEecCCCCcceeEEEEEEEecCC-ceEEEEEEcC
Q 043944 31 ALVKHIRAPVHLVWSLVRRFDQPQKYKPFVSRCVVNGDLGIGSVREVNVKSGLPATTSTERLELLDDEE-HILGIKIVGG 109 (186)
Q Consensus 31 sv~~~I~Ap~~~VW~vl~Df~~~~~W~p~v~~~~~~G~~~vG~vR~~~~~~g~p~~~~~Erl~~~D~~~-~~~~Y~i~~g 109 (186)
+.+.+++++++++++++.|-..+..|.-... .++.+. -|..- +-+| .+.-+++++.+++ -.+.|++-+
T Consensus 176 ~l~~tfn~~~~eLy~~fld~~rv~~wt~S~a--~l~~~~-~g~f~---lf~G----nVtg~~~~~e~~K~Iv~kWrl~~- 244 (301)
T KOG2936|consen 176 SLSATFNCRVDELYEIFLDPERVKAWTRSPA--ELEADP-GGKFS---LFDG----NVTGEFLELEKNKKIVMKWRLKS- 244 (301)
T ss_pred eehhhcCCCHHHHHHHHhcHHHHHHhcCChh--hcccCC-CCceE---Eecc----cceeeeeeecCCCeEEEEEeccc-
Confidence 3444899999999999999999988975322 333221 13322 2356 3444455555543 345777744
Q ss_pred CccceeEEEEEEEEeccC-CCCCeEE
Q 043944 110 DHRLRNYSSIMTVHPEII-DGRPGTL 134 (186)
Q Consensus 110 ~~p~~~y~at~~v~p~~~-~gt~~t~ 134 (186)
-| ..+.||+.++.... +.|++++
T Consensus 245 -Wp-~~~~atI~~~f~~~~~~t~l~~ 268 (301)
T KOG2936|consen 245 -WP-DGHDATITLTFYESQGETKLQV 268 (301)
T ss_pred -CC-CCccceEEEEEecCCCceEEEE
Confidence 22 24566777776543 3453333
No 74
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=25.46 E-value=29 Score=24.30 Aligned_cols=17 Identities=41% Similarity=0.421 Sum_probs=12.1
Q ss_pred cccHHHHHhhhcCCCCC
Q 043944 9 VMEAQYIRRHHRHEPRE 25 (186)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (186)
.||.|+|+||-+..=+.
T Consensus 28 lmErQAiRRme~G~Lse 44 (88)
T PF05121_consen 28 LMERQAIRRMEAGSLSE 44 (88)
T ss_pred HHHHHHHHHhccCCCCH
Confidence 48888888887665443
Done!