BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043946
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 311 bits (796), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 147/183 (80%), Positives = 159/183 (86%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDL
Sbjct: 74 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPP 180
T KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM A
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKS 193
Query: 181 TVQ 183
V+
Sbjct: 194 NVK 196
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 145/168 (86%), Positives = 156/168 (92%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
T KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 308 bits (789), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 145/169 (85%), Positives = 156/169 (92%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 23 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 82
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDL
Sbjct: 83 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 142
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
T KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct: 143 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 307 bits (786), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 144/168 (85%), Positives = 156/168 (92%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGK+CLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 14 DYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 73
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDL
Sbjct: 74 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 133
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
T KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 305 bits (781), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/168 (85%), Positives = 155/168 (92%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D LFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 4 DALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 63
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDL
Sbjct: 64 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 123
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
T KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 305 bits (780), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/169 (85%), Positives = 155/169 (91%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 65
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVG KCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDL 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
T KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct: 126 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 300 bits (769), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 141/164 (85%), Positives = 152/164 (92%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124
FRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT KK
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 125 VVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
VV Y TAK FAD +GIPF+ETSAK++ NVEQ+FM M A+IK RM
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 300 bits (768), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 142/169 (84%), Positives = 153/169 (90%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 90
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDL
Sbjct: 91 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
T KKVV Y TAK FAD +GIPF+ETSAK++ NVEQ+F A+IK R
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKRXG 199
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 299 bits (765), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 142/169 (84%), Positives = 153/169 (90%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
T KKVV TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 299 bits (765), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 142/169 (84%), Positives = 153/169 (90%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTA 66
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DL
Sbjct: 67 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL 126
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
T KKVV TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM
Sbjct: 127 TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 283 bits (725), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 138/200 (69%), Positives = 154/200 (77%), Gaps = 4/200 (2%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIG+SGVGKSCLLLRF+DD+Y + YISTIGVDFKI+TVE DGKTVKLQIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+ V KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPP 180
DK+VV Y+ AK FAD +PF+ETSA DS NVE AF+ M IK M+ Q +
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185
Query: 181 ----TVQIKGQPVNQKASCC 196
V +KGQ + CC
Sbjct: 186 EDKGNVNLKGQSLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 281 bits (718), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 139/201 (69%), Positives = 155/201 (77%), Gaps = 5/201 (2%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIG+SGVGKSCLLLRF+DD+Y + YISTIGVDFKI+TVE DGKTVKLQIWDTA
Sbjct: 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 65
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+ V KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPP 180
DK+VV Y+ AK FAD +PF+ETSA DS NVE AF+ M IK M+ Q +
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKK 185
Query: 181 ----TVQIKGQPV-NQKASCC 196
V +KGQ + N CC
Sbjct: 186 EDKGNVNLKGQSLTNTGGGCC 206
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 130/168 (77%), Positives = 146/168 (86%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGKSCLLLRFADD+Y DSYISTIGVDFKIRT+ + KTVKLQIWDTA
Sbjct: 7 DYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTA 66
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRGAHGIIIVYDVTD++SF+NVKQW+ EIDRYA ENVNKLLVGNKCDL
Sbjct: 67 GQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDL 126
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
K+VV+ + + AD GI F+ETSAK++ NVEQAF M +IK R+
Sbjct: 127 VSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 270 bits (690), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 130/165 (78%), Positives = 142/165 (86%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIG+SGVGKSCLLLRF+DD+Y + YISTIGVDFKI+TVE DGKTVKLQIWDTA
Sbjct: 19 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTA 78
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+ V KLLVGNKCDL
Sbjct: 79 GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 138
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIK 165
DK+VV Y+ AK FAD +PF+ETSA DS NVE AF+ M IK
Sbjct: 139 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 183
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 102/168 (60%), Positives = 139/168 (82%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGK+C+L RF++D++ ++ISTIG+DFKIRT+E DGK +KLQIWDTA
Sbjct: 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 65
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+ I+ +AS +V K+++GNKCD+
Sbjct: 66 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
DK+ VS E + A + GI FMETSAK ++NVE AF + DIK +M
Sbjct: 126 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 231 bits (588), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 102/168 (60%), Positives = 139/168 (82%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFKLLLIGDSGVGK+C+L RF++D++ ++ISTIG+DFKIRT+E DGK +KLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+ I+ +AS +V K+++GNKCD+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
DK+ VS E + A + GI FMETSAK ++NVE AF + DIK +M
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 229 bits (585), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 108/116 (93%), Positives = 113/116 (97%)
Query: 6 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65
LLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 66 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
RTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 214 bits (545), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 105/161 (65%), Positives = 133/161 (82%), Gaps = 1/161 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+LFKLL+IGDSGVGKS LLLRFAD+++ SYI+TIGVDFKIRTVE +G+ VKLQIWDTA
Sbjct: 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTA 66
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTITS+YYRG HG+I+VYDVT ESF NVK+WL+EI++ ++V ++LVGNK D
Sbjct: 67 GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGNKNDD 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161
++KVV E A FA ++GI ETSAK+++NVE+ F +T
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK VKLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW ++ +A++ LLVGNK D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
+ +VV+ + +A A E+GIPF+E+SAK+ NV + F + I+ ++ S
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK VKLQ+WDTA
Sbjct: 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 77
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A++ LLVGNK D+
Sbjct: 78 GQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
+ +VV+ + +A A E+GIPF+E+SAK+ NV + F + I+ ++ S
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 203 bits (516), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 131/168 (77%), Gaps = 1/168 (0%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
+ K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK VKLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122
ERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A++ LLVGNK D+ +
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
+VV+ + +A A E+GIPF+E+SAK+ NV + F + I+ ++ S
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 173
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 203 bits (516), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK VKLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW ++ +A++ LLVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
+ +VV+ + +A A E+GIPF+E+SAK+ NV + F + I+ ++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 202 bits (515), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 94/170 (55%), Positives = 131/170 (77%), Gaps = 1/170 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D + K+LLIGDSGVGKSCLL+RF +D + S+I+TIG+DFKI+TV+ +GK VKLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW ++ +A++ LLVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
+ +VV+ + +A A E+GIPF+E+SAK+ NV + F + I+ ++ S
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 124/157 (78%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DY+FK+L+IG+S VGK+ L R+ADDS+ +++ST+G+DFK++T+ ++ K +KLQIWDTA
Sbjct: 3 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 62
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQER+RTIT++YYRGA G I++YD+T++ESFN V+ W +I Y+ +N LLVGNKCD+
Sbjct: 63 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157
D++VVS E + AD +G F E SAKD++NV+Q F
Sbjct: 123 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 127/173 (73%), Gaps = 1/173 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDT 59
D FK++L+GDSGVGK+CLL+RF D ++L ++IST+G+DF+ + ++ DG VKLQ+WDT
Sbjct: 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDT 67
Query: 60 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119
AGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI YA +V +L+GNK D
Sbjct: 68 AGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
Query: 120 LTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQP 172
++VV E + A E G+PFMETSAK LNV+ AF A+ ++K R P
Sbjct: 128 SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 196 bits (497), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 131/188 (69%), Gaps = 2/188 (1%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DY FK+L+IG+S VGK+ L R+ADDS+ +++ST+G+DFK++T+ ++ K +KLQIWDTA
Sbjct: 6 DYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTA 65
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+RTIT++YYRGA G I+ YD+T++ESFN V+ W +I Y+ +N LLVGNKCD
Sbjct: 66 GLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDX 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPP 180
D++VVS E + AD +G F E SAKD++NV+Q F + I + + +++ A P
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE--SLDTADPA 183
Query: 181 TVQIKGQP 188
K P
Sbjct: 184 VTGAKQGP 191
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 195 bits (496), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 125/168 (74%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DY+FKLLLIG+S VGK+ L R+ADDS+ +++ST+G+DFK++TV + K +KLQIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQER+RTIT++YYRGA G +++YD+ +QESF V+ W +I Y+ +N +LVGNKCDL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
D++VV E + AD++G F E SAK+++NV+Q F + I +M
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 195 bits (495), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 129/169 (76%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DY+FKLL+IG+S VGK+ L R+ADD++ +++ST+G+DFK++TV + K VKLQIWDTA
Sbjct: 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTA 80
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQER+RTIT++YYRGA G I++YD+T++ESFN V+ W +I Y+ +N +LVGNKCD+
Sbjct: 81 GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
+++VV E + A+++G F E SAK++++V QAF + I ++M+
Sbjct: 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 184 bits (467), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 120/167 (71%)
Query: 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R V DGK +KLQIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
QE FR+IT SYYRGA G ++VYD+T +E+FN++ WL + +++S N+ +L+GNK DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
++ V E +AFA E G+ FMETSAK + NVE+AF+ +I ++
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 118/164 (71%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKT+K QIWDTA
Sbjct: 18 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 77
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL
Sbjct: 78 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 137
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + A+AFA++ G+ F+ETSA DS NVE AF + +I
Sbjct: 138 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 118/164 (71%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKT+K QIWDTA
Sbjct: 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 86
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL
Sbjct: 87 GQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + A+AFA++ G+ F+ETSA DS NVE AF + +I
Sbjct: 147 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/169 (49%), Positives = 124/169 (73%), Gaps = 1/169 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+ ++++IG GVGK+ L+ RF DD++ ++ ST+GVDFKI+TVE GK ++LQIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+ ID+YASE+ LLVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 121 TDKKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
+ ++ + + FA +I G+ F E SAKD+ NV++ F+ + DI +M
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 127/175 (72%), Gaps = 4/175 (2%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+LFK++LIG++GVGK+CL+ RF + +TIGVDF I+TVE +G+ VKLQIWDTA
Sbjct: 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTA 83
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFR+IT SYYR A+ +I+ YD+T +ESF + +WL EI++YAS V +LVGNK DL
Sbjct: 84 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMN 175
+++ VS + A+ F++ + ++ETSAK+S NVE+ F+ D+ R+ S+ N
Sbjct: 144 AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL----DLACRLISEARQN 194
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 180 bits (456), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 118/163 (72%)
Query: 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
YLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + DGK +KLQIWDTAG
Sbjct: 9 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG 68
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
QE FR+IT SYYRGA G ++VYD+T +++FN++ WL + ++++ N+ +L+GNK DL
Sbjct: 69 QESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
++ V E +AFA E G+ FMETSAK + NVE+AF+ +I
Sbjct: 129 SRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 180 bits (456), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 1/171 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKT+K QIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL
Sbjct: 63 GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 122
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 171
+ V + A+AFA++ + F+ETSA DS NVE+AF + +I R+ SQ
Sbjct: 123 RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY-RIVSQ 172
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 126/180 (70%), Gaps = 9/180 (5%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+LFKL+L+GD+ VGK+C++ RF ++ + STIGVDF ++T+E GK VKLQIWDTA
Sbjct: 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTA 86
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFRTIT SYYR A+G I+ YD+T + SF +V W+ ++ +YA N+ +LL+GNK DL
Sbjct: 87 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDL 146
Query: 121 TDKKVVSYETAKAFADEIGIP-FMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARP 179
++ + VS A++ A+ I +ETSAKDS NVE+AF+ R+A++ M + P
Sbjct: 147 SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL--------RVATELIMRHGGP 198
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 117/164 (71%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKT+K QIWDTA
Sbjct: 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 86
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL
Sbjct: 87 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 146
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + A+AFA++ G+ F+ETSA DS NVE AF + +I
Sbjct: 147 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 117/164 (71%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKT+K QIWDTA
Sbjct: 6 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 65
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ +LVGNK DL
Sbjct: 66 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + A+AFA++ G+ F+ETSA DS NVE AF + +I
Sbjct: 126 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 116/164 (70%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKT+K QIWDTA
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 62
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ LVGNK DL
Sbjct: 63 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 122
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + A+AFA++ G+ F+ETSA DS NVE AF + +I
Sbjct: 123 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 176 bits (447), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 116/164 (70%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF + + STIGV+F R+++ DGKT+K QIWDTA
Sbjct: 9 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 68
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+R ITS+YYRGA G ++VYD+ ++ NV++WL E+ +A N+ LVGNK DL
Sbjct: 69 GLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDL 128
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + A+AFA++ G+ F+ETSA DS NVE AF + +I
Sbjct: 129 RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 170 bits (431), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 110/163 (67%)
Query: 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
Y+FK ++IGD GVGKSCLL +F + ++ TIGV+F R +E G+ +KLQIWDTAG
Sbjct: 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 73
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
QERFR +T SYYRGA G ++VYD+T + ++N++ WL + + N +L+GNK DL
Sbjct: 74 QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
++ V+YE AK FA+E G+ F+E SAK NVE AF+ I
Sbjct: 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 169 bits (428), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 129/213 (60%), Gaps = 17/213 (7%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D LFK++LIGDSGVGKS LL RF + + STIGV+F RT+E +GK +K QIWDTA
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTA 70
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQER+R ITS+YYRGA G +IVYD++ S+ N WL+E+ A +NV L+GNK DL
Sbjct: 71 GQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM-----------TADIKNRMA 169
+ V E +K FA E + F ETSA +S NV++AF + D+ + A
Sbjct: 131 AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSA 190
Query: 170 SQPAMNNARP--PTVQIKGQP-VNQKA---SCC 196
+ A + P PT+ + P N+KA +CC
Sbjct: 191 NGNANGASAPNGPTISLTPTPNENKKANGNNCC 223
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 109/163 (66%)
Query: 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
Y+FK ++IGD GVGKSCLL +F + ++ TIGV+F R +E G+ +KLQIWDTAG
Sbjct: 29 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG 88
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
Q RFR +T SYYRGA G ++VYD+T + ++N++ WL + + N +L+GNK DL
Sbjct: 89 QGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 148
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
++ V+YE AK FA+E G+ F+E SAK NVE AF+ I
Sbjct: 149 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 114/170 (67%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+LFK L+IG +G GKSCLL +F ++ + TIGV+F R V GKTVKLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFR++T SYYRGA G ++VYD+T +E++N++ WL + AS N+ +L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
++ V++ A FA E + F+ETSA NVE+AF+ I N++ S
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 166 bits (420), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 1/177 (0%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVE-QDGKTVKLQIWDT 59
DYLFK++LIGDSGVGKS LL RF D + STIGV+F ++++ ++ K +K QIWDT
Sbjct: 5 DYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDT 64
Query: 60 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119
AGQER+R ITS+YYRGA G ++VYD+T + SF N+++WL E+ A N+ LLVGNK D
Sbjct: 65 AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSD 124
Query: 120 LTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNN 176
L +V++ A +A + + F+ETSA ++ NVE AF + +I N + A N
Sbjct: 125 LKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 108/157 (68%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 108/157 (68%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 164
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 113/170 (66%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+LFK L+IG++G GKSCLL +F + + D TIGV+F + + GK VKLQIWDTA
Sbjct: 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 67
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFR++T SYYRGA G ++VYD+T +E++N + WL + AS+N+ +L GNK DL
Sbjct: 68 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 127
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
+ V++ A FA E + F+ETSA NVE+AF+ I N++ S
Sbjct: 128 DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 108/157 (68%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F ++V D TVK +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T+QE+F K W+ E+ R AS ++ L GNK DL +K
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
++V YE A+A+AD+ + FMETSAK ++NV F+A+
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAI 165
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 108/157 (68%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 109/161 (67%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/161 (48%), Positives = 109/161 (67%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+ +
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 108/157 (68%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/164 (51%), Positives = 108/164 (65%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
DYLFK++LIGDSGVGKS LL RF D + STIGV+F RT+E + K +K QIWDTA
Sbjct: 8 DYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTA 67
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+R ITS+YYRGA G +IVYD++ S+ N WL E+ A +NV L+GNK DL
Sbjct: 68 GLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDL 127
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + AK FA E + F ETSA +S NV++AF + I
Sbjct: 128 AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 162 bits (411), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 108/157 (68%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 106/157 (67%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T+ ++F K W+ E+ R AS N+ L GNK DL K
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+A+AD+ + FMETSAK ++NV + FMA+
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 160
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 107/157 (68%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+++AD+ + FMETSAK S+NV + FMA+
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 162
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 160 bits (404), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 79/167 (47%), Positives = 111/167 (66%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+LFK L+IG++G GKSCLL +F + + D TIGV+F + + GK VKLQIWDTA
Sbjct: 9 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
GQERFR++T SYYRGA G ++VYD+T +E++N + WL + AS+N+ +L GNK DL
Sbjct: 69 GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 128
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V++ A FA E + F+ETSA +VE+AF+ I N+
Sbjct: 129 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T+ ++F K W+ E+ R AS N+ L GNK DL K
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+A+AD+ + FMETSAK ++NV + FMA+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 105/157 (66%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STI F +TV D TVK +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T+ ++F K W+ E+ R AS N+ L GNK DL K
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+A+AD+ + FMETSAK ++NV + FMA+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAI 162
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 105/157 (66%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+G+S VGKS L+LRF + + STIG F +TV D TVK +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
R+ ++ YYRGA I+VYD+T++ESF K W+ E+ R AS N+ L GNK DL +K
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
+ V ++ A+++AD+ + F ETSAK S NV + F A+
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAI 164
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 115/171 (67%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
+++FK++LIG+SGVGK+ LL RF + + +TIGV+F RTV VK QIWDTA
Sbjct: 8 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 67
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+R ITS+YYRGA G ++V+D+T +++ V++WL E+ +A + +LVGNK DL
Sbjct: 68 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 171
+ + V E A+ FA+ G+ F+ETSA DS NVE AF + +I +++ Q
Sbjct: 128 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 115/171 (67%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
+++FK++LIG+SGVGK+ LL RF + + +TIGV+F RTV VK QIWDTA
Sbjct: 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 82
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ER+R ITS+YYRGA G ++V+D+T +++ V++WL E+ +A + +LVGNK DL
Sbjct: 83 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 171
+ + V E A+ FA+ G+ F+ETSA DS NVE AF + +I +++ Q
Sbjct: 143 SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 109/162 (67%), Gaps = 2/162 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K+L+IG+SGVGKS LLLRF DD++ +TIGVDFK++T+ DG KL IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTD 122
RFRT+T SYYRGA G+I+VYDVT +++F + WLNE++ Y + N + LVGNK D +
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKEN 135
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
++V E K FA + F+E SAK V+ AF + I
Sbjct: 136 REVDRNEGLK-FARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 110/167 (65%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D+LFK L+IG++G GKSCLL +F + + D TIGV+F + + GK VKLQIWDTA
Sbjct: 6 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 65
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120
G ERFR++T SYYRGA G ++VYD+T +E++N + WL + AS+N+ +L GNK DL
Sbjct: 66 GLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V++ A FA E + F+ETSA +VE+AF+ I N+
Sbjct: 126 DADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 117/179 (65%), Gaps = 11/179 (6%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTV--------EQDGKTV 52
DYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V GK
Sbjct: 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAF 82
Query: 53 K--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENV 109
K LQ+WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A EN
Sbjct: 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 110 NKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
+ +L+GNK DL D++ V+ A+ AD+ GIP+ ETSA NVE+A + I RM
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 152 bits (384), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 110/170 (64%), Gaps = 5/170 (2%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
+FK+++IGDS VGK+CL RF + D +TIGVDF+ R V+ DG+ +K+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 63 ERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDL 120
ERFR ++ YYR H ++ VYD+T+ SF+++ W+ E ++ N + ++LVGNKCDL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAK---DSLNVEQAFMAMTADIKNR 167
V + A+ FAD +P ETSAK D+ +VE FM + +K+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 108/172 (62%), Gaps = 5/172 (2%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+L+GD G GKS L+LRF D +++ STIG F +T+ + TVK +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124
+ ++ YYRGA IIV+DVT+Q SF K+W+ E+ + N+ L GNK DL D +
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 125 VVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS-QPAMN 175
V+ E A+ +A E G+ FMETSAK + NV++ F +I R+ QP N
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY----EIARRLPRVQPTEN 181
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 130/213 (61%), Gaps = 19/213 (8%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD--------GKTV 52
DYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 53 K--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENV 109
K LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A EN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 110 NKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
+ +L+GNK DL D++ V+ A+ A++ GIP+ ETSA NVE++ + I RM
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM- 187
Query: 170 SQPAMNNARPPTV------QIKGQ-PVNQKASC 195
+ P TV ++ G+ P +K +C
Sbjct: 188 EKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 117/179 (65%), Gaps = 11/179 (6%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD--------GKTV 52
DYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 53 K--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENV 109
K LQ+WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++ A EN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 110 NKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
+ +L+GNK DL D++ V+ A+ A++ GIP+ ETSA NVE++ + I RM
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K+ L+GD+GVGKS ++ RF D + + TIG F +TV + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RF ++ YYRG+ +IVYD+T Q+SF +K+W+ E+ + EN+ + GNKCDL+D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V + AK +A+ IG +ETSAK+++N+E+ F ++ I
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 5/170 (2%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
+FK+++IGDS VGK+CL RF + D +TIGVDF+ R V+ DG+ +K+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 63 ERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDL 120
ERFR ++ YYR H ++ VYD T+ SF+++ W+ E ++ N + ++LVGNKCDL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAK---DSLNVEQAFMAMTADIKNR 167
V + A+ FAD P ETSAK D+ +VE F + +K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 116/179 (64%), Gaps = 11/179 (6%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD----------GK 50
DYL K L +GDSGVGK+ +L ++ D + +I+T+G+DF+ + V G+
Sbjct: 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQ 68
Query: 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENV 109
+ LQ+WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++ +A SEN
Sbjct: 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128
Query: 110 NKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
+ +L GNK DL D++ V E A+ A++ GIP+ ETSA + N+ A + I RM
Sbjct: 129 DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K+ L+GD+GVGKS ++ RF +DS+ + TIG F +TV+ + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR + YYRG+ IIVYD+T +E+F+ +K W+ E+ ++ ++ + GNKCDLTD
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V AK +AD I F+ETSAK+++N+ + F+ ++ I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 121/198 (61%), Gaps = 8/198 (4%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+ +G+ VGK+ L+ RF DS+ ++Y +TIG+DF +T+ + +T++LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGNK DL DK
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ 183
+ VS E + A E+ + F+ETSAK NV+Q F + A + ++Q + +R +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 190
Query: 184 IK-----GQPVNQKASCC 196
IK QPV++ C
Sbjct: 191 IKLEKPQEQPVSEGGCSC 208
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 104/161 (64%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K+ L+GD+GVGKS ++ RF +DS+ + TIG F +TV+ + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR + YYRG+ IIVYD+T +E+F+ +K W+ E+ ++ ++ + GNKCDLTD
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
+ V AK +AD I F+ETSAK+++N+ + F+ ++ I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 111/170 (65%), Gaps = 6/170 (3%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+K++L GD+ VGKS L+R + + ++ +T+GVDF+++T+ DG+ LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD- 122
RFR+I SY+R A G++++YDVT ++SF N+++W++ I+ A E V +LVGNK D+ D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 123 -----KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+K V + A G F ETSAKD N+ +A + + ++K R
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 11/178 (6%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD--------GKTV 52
DYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 53 K--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENV 109
K LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++ A EN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 110 NKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ +L+GNK DL D++ V+ A+ A++ GIP+ ETSA NVE++ + I R
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 11/178 (6%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD--------GKTV 52
DYL KLL +GDSGVGK+ L R+ D+ + +I+T+G+DF+ + V D GK
Sbjct: 9 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAF 68
Query: 53 K--LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENV 109
K LQ+WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++ A EN
Sbjct: 69 KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 110 NKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ +L+GNK DL D++ V+ A+ A++ GIP+ ETSA NVE++ + I R
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 108/159 (67%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+ +G+ VGK+ L+ RF DS+ ++Y +TIG+DF +T+ + +TV+LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + ++VYD+T+ SF+ +W++++ +V +LVGNK DL+DK
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162
+ VS E + A E+ + F+ETSAK NV+Q F + A
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 173
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 106/159 (66%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+ +G+ VGK+ L+ RF DS+ ++Y +TIG+DF +T+ + +T++LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGNK DL DK
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162
+ VS E + A E+ + F+ETSAK NV+Q F + A
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 165
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 106/159 (66%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+ +G+ VGK+ L+ RF DS+ ++Y +TIG+DF +T+ + +TV+LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGNK DL DK
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162
+ VS E + A E+ + F+ETSAK NV+Q F + A
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 120/193 (62%), Gaps = 8/193 (4%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+ +G+ VGK+ L+ RF DS+ ++Y +TIG+DF +T+ + +TV+LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGNK DL DK
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ 183
+ VS E + A E+ + F+ETSAK NV+Q F + A + ++Q + +R +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 193
Query: 184 IK-----GQPVNQ 191
IK QPV++
Sbjct: 194 IKLEKPQEQPVSE 206
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 115/182 (63%), Gaps = 3/182 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+ +G+ VGK+ L+ RF DS+ ++Y +TIG+DF +T+ + +TV+LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGNK DL DK
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ 183
+ VS E + A E+ + F+ETSAK NV+Q F + A + ++Q + +R +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DRSREDMID 183
Query: 184 IK 185
IK
Sbjct: 184 IK 185
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 104/154 (67%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+ +G+ VGK+ L+ RF DS+ ++Y +TIG+DF +T+ + +TV+LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + ++VYD+T+ SF +W++++ +V +LVGNK DL DK
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157
+ ++ E + A E+ + F+ETSAK NV+Q F
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 106/167 (63%), Gaps = 4/167 (2%)
Query: 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
Y FK++L+G+ VGK+ L+LR+ ++ + D +I+T+G F + + GK V L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
QERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
++ VS + A+++A+ +G TSAK + +E+ F+ D+ RM
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRM 167
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 11/164 (6%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG-KTVKLQIWDTAG 61
+ K++++GDSGVGK+ L+ R+ +D Y Y +TIG DF + V DG K +Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK------LLVG 115
QERF+++ ++YRGA ++VYDVT+ SF N+K W +E +A NVN +++G
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILG 125
Query: 116 NKCDLTD-KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
NK D + KK+VS ++A+ A +G IP TSAK+++NV+ AF
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAF 169
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 136 bits (343), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
Y FK++L+G+ VGK+ L+LR+ ++ + D +I+T+ F + + GK V L IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
QERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + +VGNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
++ VS + A+++A+ +G TSAK + +E+ F+ D+ RM
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRM 181
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 4/167 (2%)
Query: 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
Y FK++L+G+ VGK+ L+LR+ ++ + D +I+T+ F + + GK V L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121
QERF + YYR ++G I+VYD+TD++SF VK W+ E+ + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168
++ VS + A+++A+ +G TSAK + +E+ F+ D+ RM
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRM 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 99/154 (64%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+ +G+ VGK+ ++ RF D++ ++Y STIG+DF +T+ D V+LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
RFR++ SY R + I+VYD+T+++SF N +W+ +I ++V LVGNK DL D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157
+ V+YE A E F ETSAK N++ F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 6/160 (3%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG V +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKC 118
ERFR++ + +YRG+ ++ + V D +SF N+ W E YA E+ +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 119 DLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D+ +++ VS E A+A+ + G P+ ETSAKDS NV AF
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 112/199 (56%), Gaps = 4/199 (2%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++GDSGVGK+ L+ ++ + + + Y +TIG DF + V D + V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 118
ERF+++ ++YRGA ++V+DVT +F + W +E AS EN +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 119 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNAR 178
DL +++V + + IP+ ETSAK+++NVEQAF + + + N
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 187
Query: 179 PPTVQIKGQPVNQKASCCS 197
P K + A CS
Sbjct: 188 EPIKLDKNERAKASAESCS 206
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 103/160 (64%), Gaps = 6/160 (3%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG V +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKC 118
ERFR++ + +YRG+ ++ + V D +SF N+ W E YA E+ +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 119 DLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D+++++ VS E A+A+ + G P+ ETSAKD+ NV AF
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/160 (42%), Positives = 103/160 (64%), Gaps = 6/160 (3%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
LFK++L+GD GVGKS L+ R+ + + TIGV+F + +E DG V +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKC 118
ERFR++ + +YRG+ ++ + V D +SF N+ W E YA E+ +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 119 DLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D+++++ VS E A+A+ + G P+ ETSAKD+ NV AF
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 129 bits (325), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 103/162 (63%), Gaps = 4/162 (2%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++GDSGVGK+ L+ ++ + + + Y +TIG DF + V D + V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 118
ERF+++ ++YRGA ++V+DVT +F + W +E AS EN +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 119 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160
DL +++V + + IP+ ETSAK+++NVEQAF +
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 4/199 (2%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++GDSGVGK+ L+ ++ + + + Y +TIG DF + V D + V +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 118
ERF+++ ++YRGA ++V+DVT +F + W +E AS EN +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 119 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNAR 178
D +++V + + IP+ ETSAK+++NVEQAF + + + N
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 187
Query: 179 PPTVQIKGQPVNQKASCCS 197
P K A CS
Sbjct: 188 EPIKLDKNDRAKASAESCS 206
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++L+GD GVGKS L+ R+ + + TIGV+F R +E DG+ V LQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 118
ERF+++ + +YRGA ++ + V D++SF N+ W E YA E+ +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 119 DLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D D++V + E A+ + E G P++ETSAKD NV AF
Sbjct: 127 DKEDRQVTT-EEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+L+G++ VGKS ++LRF + + ++ TIG F + V + TVK +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-- 122
F ++ YYR A ++VYDVT +SF + W+ E+ AS+++ LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 123 -KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
++ V+ E + A+E G+ F ETSAK NV F+ + I
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 110/199 (55%), Gaps = 4/199 (2%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++GDSGVGK+ L+ ++ + + + Y +TIG DF + V D + V +QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKC 118
ERF+++ ++YRGA ++V+DVT +F + W +E AS EN +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 119 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNAR 178
DL +++V + + IP+ ETSAK+++NVEQAF + + + N
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFP 187
Query: 179 PPTVQIKGQPVNQKASCCS 197
P K A CS
Sbjct: 188 EPIKLDKNDRAKASAESCS 206
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++G GVGKS L L+F D +++ Y T ++ + V DG+ V++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 121
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
DK+ VS E AK AD+ + ++ETSAK NV++ F + +I+ R
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++G GVGKS L L+F D +++ Y T ++ + V DG+ V++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 121
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
DK+ VS E AK A++ + ++ETSAK NV++ F + +I+ R
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++G GVGKS L L+F D +++ Y T ++ + V DG+ V++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 121
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
DK+ VS E AK A++ + ++ETSAK NV++ F + +I+ R
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/166 (39%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++G GVGKS L L+F D +++ Y T ++ + V DG+ V++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 121
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
DK+ VS E AK A++ + ++ETSAK NV++ F + +I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++G+ VGKS ++ R+ + Y TIGVDF R ++ + + V+L +WDTAGQE
Sbjct: 7 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124
F IT +YYRGA ++V+ TD+ESF + W ++ ++ LV NK DL D
Sbjct: 67 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 125 VVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157
+ E A+ A + + F TS K+ LNV + F
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++G GVGKS L L+F D +++ Y T ++ + V DG+ V++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDL 120
E + I +Y+R G ++V+ +T+ ESF ++ +I R +E + L+VGNK DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 171
+++ V E A++ A+E G+ ++ETSAK NV++ F + +I+ + S+
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 176
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++G GVGKS L L+F D +++ Y T ++ + V DG+ V++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDL 120
E + I +Y+R G ++V+ +T+ ESF ++ +I R +E + L+VGNK DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 171
+++ V E A++ A+E G+ ++ETSAK NV++ F + +I+ + S+
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 172
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K++++G GVGKS L L+F D +++ Y T ++ + V DG+ V++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT 121
E + I +Y+R G + V+ +T+ ESF + +I R ENV LLVGNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
DK+ VS E AK A++ + ++ETSAK NV++ F + +I+ R
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNKCDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V + A+ A GIPF+ETSAK V+ AF + +I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++F ++D Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+F + Y + G +VY +T Q +FN+++ +I R +E+V +LVGNKCDL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 123 KKVVSYETAKAFADE-IGIPFMETSAKDSLNVEQAFMAMTADI 164
++VV E + A + F+E+SAK +NV + F + I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V + A+ A GIPF+ETSAK V+ AF + +I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 123 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 177
Query: 180 PTV 182
P V
Sbjct: 178 PEV 180
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 184
Query: 180 PTV 182
P V
Sbjct: 185 PEV 187
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 189
Query: 180 PTV 182
P V
Sbjct: 190 PEV 192
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 184
Query: 180 PTV 182
P V
Sbjct: 185 PEV 187
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y+ T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 184
Query: 180 PTV 182
P V
Sbjct: 185 PEV 187
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++F +++ Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+F + Y + G +VY +T Q +FN+++ +I R +E+V +LVGNKCDL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 123 KKVVSYETAKAFADE-IGIPFMETSAKDSLNVEQAFMAMTADI 164
++VV E + A + F+E+SAK +NV + F + I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II +DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPAL---AP 184
Query: 180 PTV 182
P V
Sbjct: 185 PEV 187
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 95/184 (51%), Gaps = 12/184 (6%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQP-----AMNNAR 178
KV + + F + + + + SAK + N E+ F+ + ++ P AM
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLIGDPNLEFVAMPCLA 183
Query: 179 PPTV 182
PP V
Sbjct: 184 PPEV 187
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
++ + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 184
Query: 180 PTV 182
P V
Sbjct: 185 PEV 187
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 97/188 (51%), Gaps = 10/188 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + YI+TIGV+ + + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ ++
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKN----RMASQPAMNNARP 179
KV + F + + + + SAK + N E+ F+ + + + PA+ P
Sbjct: 132 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL---AP 186
Query: 180 PTVQIKGQ 187
P VQ+ Q
Sbjct: 187 PEVQVDEQ 194
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
KV + + F + + + + SAK + N E+ F+ + +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R Y++T+GV+ + +K +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 135 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 189
Query: 180 PTV 182
P V
Sbjct: 190 PEV 192
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y+ T+GV+ + +K +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
KV + + F + + + + SAK + N E+ F+ + +
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++F +++ Y TI ++ + VE D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+F + Y + G +VY +T Q +FN+++ +I R +++V +LVGNKCDL D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 123 KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMAMTADI 164
++VV E + A + F+E+SAK +NV + F + I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++F +++ Y TI ++ + VE D + L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+F + Y + G +VY +T Q +FN+++ +I R +++V +LVGNKCDL D
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 123 KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMAMTADI 164
++VV E + A + F+E+SAK +NV + F + I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM----AMTADIKNRMASQPAMNNARP 179
KV + + F + + + + SAK + N E+ F+ + D + PA+ P
Sbjct: 130 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---AP 184
Query: 180 PTV 182
P V
Sbjct: 185 PEV 187
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
KV + + F + + + + SAK + N E+ F+ + +
Sbjct: 132 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + Y++T+GV+ + +K +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ D+
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
KV + + F + + + + SAK + N E+ F+ + +
Sbjct: 126 KVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + YI+TIGV+ + + +K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ ++
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAM 174
KV + F + + + + SAK + N E+ F+ + ++A P +
Sbjct: 124 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNPQL 168
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 91/171 (53%), Gaps = 7/171 (4%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
FKL+L+GD G GK+ + R + YI+TIGV+ + + +K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+F + YY A II++DVT + ++ NV W ++ R EN+ +L GNK D+ ++
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 124 KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAM 174
KV + F + + + + SAK + N E+ F+ + ++A P +
Sbjct: 125 KVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLA----RKLAGNPQL 169
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPP 180
+ V S + A+ A GIP++ETSAK VE AF + +I+ Q + PP
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 174
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKN 166
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKN 166
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 130 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGN+CDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y +I ++ + V DG+T L I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 128
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 129 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y +I ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGK+ L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D + TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + +++ Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + + +
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQH 166
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 4/165 (2%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGK-TVKLQIWDTAGQ 62
K++++GD GK+ L FA +++ Y TIG+DF +R + G V LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCD 119
+ Y GA G+++VYD+T+ +SF N++ W + + + E+ + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 120 LTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
L + + E F E G SAK +V F + A+I
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 23/205 (11%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
K + +GD VGK+C+L+ + + + YI T+ +F V DG+ V L +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 121
E + + YRGA ++ + + + S+ NV K+W+ E+ R+A NV +LVG K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLR 126
Query: 122 DKK--------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAFMAMTADIKNRMASQP 172
D K V++ + +IG ++E S+K NV+ F D ++ QP
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-----DTAIKVVLQP 181
Query: 173 AMNNARPPTVQIKGQPVNQKASCCS 197
P ++ + N + S CS
Sbjct: 182 ------PRRKEVPRRRKNHRRSGCS 200
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 128 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 16 KSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRG 75
KS L ++F ++++ Y TI DF + +E D L+I DTAG E+F ++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAF 134
G I+VY + +Q+SF ++K ++I R E V +LVGNK DL ++ VS +A
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 135 ADEIGIPFMETSAKDSLNVEQAF 157
A+E G PFMETSAK V++ F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGHE 80
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNKCDL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 139
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V + A+ A GIPF+ETSAK V+ AF + +I+
Sbjct: 140 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 184
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ + +I R S++V +LVGNKCDL
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP- 139
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIK 165
+ V + A A GIPF+ETSAK VE AF + +I+
Sbjct: 140 TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNKCDL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIKNRMA 169
++ V E + A+ IG +ME SAK V + F MA A ++ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 170 SQ 171
+
Sbjct: 187 KK 188
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIKNRMA 169
++ V E + A+ IG +ME SAK V + F MA A ++ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 170 SQ 171
+
Sbjct: 185 KK 186
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIKNRMA 169
++ V E + A+ IG +ME SAK V + F MA A ++ R
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 187
Query: 170 SQ 171
+
Sbjct: 188 KK 189
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 17/182 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIKNRMA 169
++ V E + A+ IG +ME SAK V + F MA A ++ R
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 186
Query: 170 SQ 171
+
Sbjct: 187 KK 188
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 87/169 (51%), Gaps = 14/169 (8%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
K + +GD VGK+C+L+ + +++ Y+ T+ +F V DG TV L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 121
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
Query: 122 DKK----------VVSYETAKAFADEIGIP-FMETSAKDSLNVEQAFMA 159
D K ++ + IG P ++E S+K NV+ F A
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 3/169 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+++ + G GVGKS L+LRF ++ +SYI T+ ++ + + D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLT 121
+F + H I+VY +T ++S +K +I E++ +LVGNKCD +
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
+ V A+A A FMETSAK + NV++ F + K R S
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
K + +GD VGK+CLL+ + +++ Y+ T+ +F V +G TV L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 121
E + + YRGA I+ + + + S+ NV K+W+ E+ YA V +LVG K DL
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLR 125
Query: 122 DKK----------VVSYETAKAFADEIGIP-FMETSAKDSLNVEQAFMAMTADIKNRMAS 170
D K ++ + IG P ++E S+K NV+ F D R+
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF-----DAAIRVVL 180
Query: 171 QP 172
QP
Sbjct: 181 QP 182
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V + A+ A GIPF+ETSAK V+ AF + +I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ + +I R SE+V +LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V + A+ A GIPF+ETSAK V+ AF + +I+
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++L+GD G GK+ LL+ FAD ++ +SY T+ + + ++ GK V L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ + +Y A +++ +DVT SF+N+ +W E++ + + V ++VG K DL
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKD 153
Query: 124 K------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K V+Y + A +G + ++E SA+ NV F
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 93/182 (51%), Gaps = 19/182 (10%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
K + +GD VGK+C+L+ + +++ Y+ T+ +F V DG TV L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLT 121
E + + YRGA ++ + + + S+ N+ K+WL E+ YA + +LVG K DL
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGTKLDLR 123
Query: 122 DKK--------VVSYETAKA--FADEIG-IPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170
D K S TA+ IG + ++E S+K NV+ F D R+A
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF-----DTAIRVAL 178
Query: 171 QP 172
+P
Sbjct: 179 RP 180
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 128
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
++ V E + A+ IG +ME SAK V + F MA A ++
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 126
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
++ V E + A+ IG +ME SAK V + F MA A ++
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 182
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
++ V E + A+ IG +ME SAK V + F MA A ++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 16 KSCLLLRFADDSYLDSYISTIGVDF-KIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYR 74
KS L ++F ++ Y TI + KI +V DG +L I DTAGQE F + Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSV--DGIPARLDILDTAGQEEFGAMREQYMR 79
Query: 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKA 133
HG ++V+ + D++SFN V + +I R ++ +LVGNK DL ++ V A A
Sbjct: 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 134 FADEIGIPFMETSAKDSLNVEQAFMAMTADIK 165
F + + E SAK LNV++AF + ++
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D Y TI ++ + V DG+T L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 125
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
++ V E + A+ IG +ME SAK V + F MA A ++
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 181
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++GD GVGKS L ++F ++D Y TI ++ T E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHT-EIDNQWAILDVLDTAGQE 77
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
F + Y R G +IVY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKD-SLNVEQAFMAMTADIKNR 167
+ V+ + K A + IP++ETSAKD LNV++ F + I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++GD GVGKS L ++F ++D Y TI D ++ E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTD 122
F + Y R G +IVY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKD-SLNVEQAFMAMTADIKNR 167
+ V+ + K A + IP++ETSAKD LNV++ F + I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 1/165 (0%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
+K+ LIGD GVGK+ + R D + +Y +T+G V+ + ++ G +K +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122
E+ + YY GA G I+ +DVT + + N+ +W+ E ++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
++ +S + + E SAK + N F+ + R
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 94/198 (47%), Gaps = 40/198 (20%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVE----------------- 46
+K +L+G+S VGKS ++LR D++ ++ +TIG F V
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 47 --------------------QDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 86
++ +K IWDTAGQER+ +I YYRGA I+V+D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 87 DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETS 146
+ + + K W+N++ S N +LV NK D +V E K +A + + F++TS
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKIDKNKFQVDILEVQK-YAQDNNLLFIQTS 184
Query: 147 AKDSLNVEQAFMAMTADI 164
AK N++ F + +I
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 94/165 (56%), Gaps = 3/165 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++G GVGKS L ++ + ++D TI ++ + V DG+T L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
+ + Y R G + V+ + + +SF ++ Q+ +I R S++V +LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ V S + A+ A GIP++ETSAK VE AF + +I+
Sbjct: 123 RTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-KIRTVEQDGKTVKLQIWDTAGQE 63
K+ ++G VGKS L ++F + ++DSY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTD 122
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDS 150
++V+SYE KA A+ F+E+SAK++
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKEN 153
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-KIRTVEQDGKTVKLQIWDTAGQE 63
K+ ++G VGKS L ++F + ++DSY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTD 122
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKD 149
++V+SYE KA A+ F+E+SAK+
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKE 152
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 17/182 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIKNRMA 169
++ V E + A+ IG +ME SAK V + F MA A ++ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 170 SQ 171
+
Sbjct: 185 KK 186
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ + Y I++ + V +S N+ ++W+ E+ + NV +LV NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSD 144
Query: 124 KVVSYETAKAFADEI-------------GIPFMETSAKDSLNVEQAFMAMT-ADIKNRMA 169
+ V E A+ + + ++E SAK V + F T A ++ R
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYG 204
Query: 170 SQ 171
SQ
Sbjct: 205 SQ 206
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 17/182 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIKNRMA 169
++ V E + A+ IG +ME SAK V + F MA A ++ R
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRG 184
Query: 170 SQ 171
+
Sbjct: 185 KK 186
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-KIRTVEQDGKTVKLQIWDTAGQE 63
K+ ++G VGKS L ++F + ++DSY TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV--NGQEYHLQLVDTAGQD 60
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTD 122
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 61 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDS 150
++V+SYE KA A+ F+E+SAK++
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKEN 148
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 124 KVVSYETAKA------------FADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
+ + E AK A+ IG +ME SAK V + F MA A ++
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ I +E DGK V+L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 144
Query: 124 KVVSYETAKAFADEI-------------GIPFMETSAKDSLNVEQAF-MAMTADIK 165
+ E AK + + ++E SAK V + F MA A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++GD GVGKS L ++F ++ Y TI D ++ E D + L + DTAGQE
Sbjct: 19 YKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 77
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
F + Y R G +IVY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKD-SLNVEQAFMAMTADIKNR 167
+ V+ + K A + IP++ETSAKD LNV++ F + I+ +
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ F+ D + + Y+ T+ ++ I +E DGK V+L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVGNKKDLRQD 144
Query: 124 KVVSYETAKAFADEI-------------GIPFMETSAKDSLNVEQAF-MAMTADIK 165
+ E AK + + ++E SAK V + F MA A ++
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+KL+++GD GVGKS L ++F ++ Y TI D ++ E D + L + DTAGQE
Sbjct: 14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQE 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTD 122
F + Y R G +IVY VTD+ SF +V ++ I R E+ +LV NK DL
Sbjct: 73 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKD-SLNVEQAFMAMTADIKNR 167
+ V+ + K A + IP++ETSAKD LNV++ F + I+ +
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 91/172 (52%), Gaps = 10/172 (5%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL + G +GVGKS L++RF ++ Y T+ ++ + D + V ++I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD-EVVSMEILDTAGQED 88
Query: 65 FRTIT-SSYYRGAHGIIIVYDVTDQESFNNV---KQWLNEIDRYASENVNKLLVGNKCDL 120
TI + R G ++VYD+TD+ SF V K L+EI + +NV +LVGNK DL
Sbjct: 89 --TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSA-KDSLNVEQAFMAMTADIKNRMASQ 171
+ VS E + A E+ F E SA N+ + F + +++ R Q
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 124
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
++ V E + A+ IG +ME SAK V + F MA A ++
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 180
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 16/171 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAFMAMT 161
++ V E + A+ IG +ME SAK V + F T
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 173
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
+ K +++GD VGK+CLL+ +A+D++ + Y+ T+ D +V GK L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 121
E + + Y +I + V + SF NVK +W+ E+ YA NV LL+G + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 122 D------------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D +K + E + A EIG ++E SA ++ F
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + D + + Y+ T+ ++ + +E DGK V+L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 122
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
++ V E + A+ IG +ME SAK V + F MA A ++
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 16 KSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRG 75
KS L ++F ++ Y TI + + V D + +L I DTAGQE F + Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAF 134
G ++V+ VTD+ SF + ++ +I R + +L+GNK DL ++ V+ E +
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 135 ADEIGIPFMETSAKDSLNVEQAFMAMTADIKN 166
A ++ + +ME SAK +NV+QAF + I+
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 123
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ D V DGK V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 140
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 125
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + D + + Y+ T+ ++ I +E DGK V+L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQD 124
Query: 124 KVVSYETAKAFADEI-------------GIPFMETSAKDSLNVEQAF-MAMTADIKNR 167
+ E AK + + ++E SAK V + F MA A ++ R
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVR 182
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ D V DGK V L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 128
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-KIRTVEQDGKTVKLQIWDTAGQE 63
K+ ++G VGKS L ++F + ++DS TI F K+ TV +G+ LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITV--NGQEYHLQLVDTAGQD 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTD 122
+ +Y +G I+VY VT +SF +K ++ D + +LVGNK DL
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDS 150
++V+SYE KA A+ F+E+SAK++
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKEN 151
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ + LLVG K DL D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ + Y +I + + SF NV+ +W E+ R+ + LLVG K DL D
Sbjct: 64 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRDD 122
Query: 124 K------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQE 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ + LLVG K DL D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLRD 122
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQED 73
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK 123
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 74 YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRDD 132
Query: 124 K------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + D + + Y+ T+ ++ + +E DGK V+L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y I++ + + +S N+ ++W E+ + NV +LVGNK DL +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRND 127
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF-MAMTADIK 165
++ V E + A+ IG +ME SAK V + F MA A ++
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + ++ YI T+ D V DGK V L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 93/171 (54%), Gaps = 16/171 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+++GD GK+CLL+ + + + Y+ T+ ++ + VE DG+ V+L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ ++I + + +S NV++ W+ E+ + + V +LVG K DL +
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-QGVPIILVGCKVDLRND 129
Query: 123 -----------KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAFMAMT 161
++ V+ + ++ AD+IG + E SAK V + F A T
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAAT 180
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 124
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ D V DGK V L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + SF NV+ +W E+ R+ N +LVG K DL D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148
Query: 123 KK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
K ++Y A A EIG + ++E SA ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 121
E + + Y +I + + SF++V+ +W E+ R+ N +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 122 DKK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D K ++Y A A EIG + ++E SA ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 121
E + + Y +I + + SF++V+ +W E+ R+ N +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 122 DKK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D K ++Y A A EIG + ++E SA ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L K +++GD VGK+CLL+ + +++ YI T+ ++ V DGK V L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGL 213
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLT 121
E + + Y +I + + SF++V+ +W E+ R+ N +LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGTKLDLR 272
Query: 122 DKK------------VVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
D K ++Y A A EIG + ++E SA ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 16 KSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRG 75
KS L+LRF ++ D+YI TI ++ + + D LQI DT G +F +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTDKKVVSYETAKA 133
H I+V+ VT ++S + I + + E++ +LVGNKCD T ++V + E A+A
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTRE-AQA 138
Query: 134 FADEIGIPFMETSAKDSLNVEQAFMA-MTADIKNRMA 169
A E FMETSAK + NV++ F +T + + M+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMS 175
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ ++ V D K V L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDSKPVNLGLWDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + S+ NV+ +W E+ R+ + +LVG K DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 121
Query: 123 KK------------VVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169
K ++Y A A EI + ++E SA ++ F I+ +
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF---DEAIRAVLC 178
Query: 170 SQPAMNNAR 178
QP R
Sbjct: 179 PQPTRQQKR 187
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 35/187 (18%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ D V DGK V L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 64 RF---------RTITSSY-----YRG-----AHGIIIVYDVTDQESFNNVK-QWLNEIDR 103
+ +T+ +Y RG A +I + + SF NV+ +W E+ R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEV-R 123
Query: 104 YASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEIG-IPFMETSAKDS 150
+ N +LVG K DL D K ++Y A A EIG + ++E SA
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 151 LNVEQAF 157
++ F
Sbjct: 184 RGLKTVF 190
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 4/162 (2%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF-KIRTVEQDGKTVKLQIWDTAGQE 63
K++++G VGK+ L +F + + + Y T+ + KI T+ +D L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD--EFHLHLVDTAGQD 83
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTD 122
+ + S+ G HG ++VY VT SF ++ ++ + V +LVGNK DL+
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164
++ V K A+ G FME+SA+++ + F + +I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 17/176 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +L+GD VGK+ L++ + + Y YI T +F V DG+ V+LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122
F + Y ++ + V SF NV ++W+ EI R +LVG + DL +
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLRED 139
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF-MAMTADIK 165
+K V E AK A+EI ++E SA N+++ F A+ A I+
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ D V D K V L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + S+ NV+ +W E+ R+ + +LVG K DL D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 127
Query: 123 KK------------VVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
K ++Y A A EI + ++E SA ++ F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++GDS GK+ LL FA D + ++Y+ T+ ++ + E D + ++L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDL-TD 122
+ + Y + ++I +D++ E+ ++V K+W EI + N LLVG K DL TD
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 147
Query: 123 -----------KKVVSYETAKAFADEIGIP-FMETSAKDSLN-VEQAFMAMTADIKNR 167
+ VSY+ A +IG ++E SA S N V F T N+
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++GDS GK+ LL FA D + ++Y+ T+ ++ + E D + ++L +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDL-TD 122
+ + Y + ++I +D++ E+ ++V K+W EI + N LLVG K DL TD
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 142
Query: 123 -----------KKVVSYETAKAFADEIGIP-FMETSAKDSLN-VEQAFMAMTADIKNR 167
+ VSY+ A +IG ++E SA S N V F T N+
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 200
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + +++ YI T+ D V D K V L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y +I + + S+ NV+ +W E+ R+ + +LVG K DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLRD 128
Query: 123 KK------------VVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
K ++Y A A EI + ++E SA ++ F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++GDS GK+ LL FA D + ++Y+ T+ ++ + E D + ++L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDL-TD 122
+ + Y + ++I +D++ E+ ++V K+W EI + N LLVG K DL TD
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 123 -----------KKVVSYETAKAFADEIGIP-FMETSAKDSLN-VEQAFMAMTADIKNR 167
+ VSY+ A +IG ++E SA S N V F T N+
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 6 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 64
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 65 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 123
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 15 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 73
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 74 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 132
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 124
Query: 123 ------------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 8 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 66
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 67 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 125
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 126 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 123 ------------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
L++++L+GD GVGK+ L FA D + +G D RT+ DG+ L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 63 ERFRTITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCD 119
E+ S S +G +IVY + D+ SF + + ++ R + +++V +LVGNK D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 120 LTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157
L + VS E +A A F+ETSA NV + F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 9 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 67
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 68 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 126
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 65
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 66 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 124
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 128
Query: 123 ------------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFA--DDSYLDSYISTIGVDFKIRTVEQDGKT---VKLQIWD 58
++++LIG+ GVGKS L FA DS +DS +G D RT+ DG++ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 59 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 117
G+ + + + +IVY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 66 NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 118 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQP 172
DL + VS +A A F+ETSA NV++ F + ++ R S+
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFA--DDSYLDSYISTIGVDFKIRTVEQDGKT---VKLQIWD 58
++++LIG+ GVGKS L FA DS +DS +G D RT+ DG++ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 59 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 117
G+ + + + +IVY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 118 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQP 172
DL + VS +A A F+ETSA NV++ F + ++ R S+
Sbjct: 124 SDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 123 ------------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + + Y+ T+ ++ + TV G+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 121
Query: 123 ------------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ + ++ + TV G+ L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRD 125
Query: 123 ------------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K +++GD VGK+CLL+ + + + Y+ T+ ++ + TV G+ L ++DTAG E
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLED 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTD- 122
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + DL D
Sbjct: 64 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-PFLLVGTQIDLRDD 122
Query: 123 -----------KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAF 157
+K ++ ETA+ A ++ + ++E SA ++ F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 9/175 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFA--DDSYLDSYISTIGVDFKIRTVEQDGKT---VKLQIWD 58
++++LIG+ GVGKS L FA DS +DS +G D RT+ DG++ + L +W+
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 96
Query: 59 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 117
G+ + + + +IVY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 118 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQP 172
DL + VS +A A F+ETSA NV++ F + ++ R S+
Sbjct: 155 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+L+GD GK+ +L A D Y ++Y+ T+ ++ +E + + V+L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 71
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDL-TD 122
+ + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G K DL TD
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 130
Query: 123 -----------KKVVSYETAKAFADEIGIP-FMETSA 147
+ +SYE A A ++G ++E SA
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+L+GD GK+ +L A D Y ++Y+ T+ ++ +E + + V+L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 70
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDL-TD 122
+ + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G K DL TD
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 129
Query: 123 -----------KKVVSYETAKAFADEIGIP-FMETSA 147
+ +SYE A A ++G ++E SA
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFA--DDSYLDSYISTIGVDFKIRTVEQDGKT---VKLQIWD 58
++++LIG+ GVGKS L FA DS +DS +G D RT+ DG++ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDS-MDSDCEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 59 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNK 117
G+ + + + +IVY +TD+ SF + ++ R +E++ +LVGNK
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 118 CDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
DL + VS +A A F+ETSA NV++ F + ++ R
Sbjct: 124 SDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 83/157 (52%), Gaps = 16/157 (10%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+L+GD GK+ +L A D Y ++Y+ T+ ++ +E + + V+L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEEQRVELSLWDTSGSPY 87
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDL-TD 122
+ + Y + +++ +D++ E+ ++ +K+W EI Y + LL+G K DL TD
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 146
Query: 123 -----------KKVVSYETAKAFADEIGIP-FMETSA 147
+ +SYE A A ++G ++E SA
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K++++GD VGK+CLLL F+ +Y+ T+ +F ++ + L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDL 120
+ + Y + +++ + V ++ SF+N+ +W EI Y + +LVG K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDL 139
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K++++GD VGK+CLLL F+ +Y+ T+ +F ++ + L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD 122
+ + Y + +++ + V ++ SF+N+ +W EI Y + +LVG K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDL-- 138
Query: 123 KKVVSYETAKAFADEI-----GIPFMETSAKDSLNVEQAF 157
+K S + K D++ + ++E S+ + + + F
Sbjct: 139 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 3/172 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
++K+LL+G GVGKS L F D + R++ DG+ L ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFG--GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLT 121
+ R + +IVY VTD+ SF + ++ R +++V +LVGNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQPA 173
+ VS + +A A F+ETSA NV+ F + I+ R S+ A
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 3/170 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
++K+LL+G GVGKS L F D + R++ DG+ L ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFG--GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLT 121
+ R + +IVY VTD+ SF + ++ R +++V +LVGNK DL
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 124
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 171
+ VS + +A A F+ETSA NV+ F + I+ R S+
Sbjct: 125 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 3/166 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
++K+LL+G GVGKS L F D + R++ DG+ L ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFG--GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLT 121
+ R + +IVY VTD+ SF + ++ R +++V +LVGNK DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ VS + +A A F+ETSA NV+ F + I+ R
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 5 KLLLIGDSGVGKSCLLLRFAD--DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIW--DTA 60
K+ ++G++ VGKS L+ F +L Y T GV+ + V TV ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-----DRYASENVNKLLVG 115
G + ++ S Y+ G + I+V+DV+ ESF + K W + DR + +LV
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR--ERPLRAVLVA 139
Query: 116 NKCDLTDKK-VVSYETAKAFADEIGIPFMETSA 147
NK DL ++ V + A+ +A + F + SA
Sbjct: 140 NKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+L L+G GK+ + A + + I T+G F +R + + T+KL WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLT- 121
RFR++ Y RG I+ + D DQE K L N +D+ + + L++GNK DL
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138
Query: 122 ---DKKVVSYETAKAFAD-EIGIPFMETSAKDSLNV 153
+K+++ A D EI + KD++++
Sbjct: 139 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+L L+G GK+ + A + + I T+G F +R V + T+K IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLT- 121
RFR++ Y RG + I+ + D D+E + L N +D+ + + L++GNK DL
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 122 ---DKKVVSYETAKAFAD-EIGIPFMETSAKDSLNV 153
+K+++ A D EI + KD++++
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+L L+G GK+ + A + + I T+G F +R + + T+KL WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLT- 121
RFR++ Y RG I+ + D DQE K L N +D+ + + L++GNK DL
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 122 ---DKKVVSYETAKAFAD-EIGIPFMETSAKDSLNV 153
+K+++ A D EI + KD++++
Sbjct: 148 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 183
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD GQ
Sbjct: 323 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 376
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 435
Query: 121 TD 122
D
Sbjct: 436 PD 437
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 81/186 (43%), Gaps = 24/186 (12%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFAD---------DSYLDSYISTIGVDFKIRTVEQDGKT 51
D +FK++L+G+SGVGKS L F ++ D+Y I VD +++
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD------KEEVTL 74
Query: 52 VKLQIW---DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASE 107
V IW D G R + + +IV+ VTD+ SF+ V + L +
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 108 NVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
++ +LVGNK DL + VS E + A + +ETSA N + F I+ R
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189
Query: 168 MASQPA 173
A
Sbjct: 190 RGRNHA 195
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113
Query: 121 TD 122
D
Sbjct: 114 PD 115
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD GQ
Sbjct: 13 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 66
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 67 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 125
Query: 121 TD 122
D
Sbjct: 126 PD 127
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD GQ
Sbjct: 14 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 67
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126
Query: 121 TD 122
D
Sbjct: 127 PD 128
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQ 54
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 113
Query: 121 TD 122
D
Sbjct: 114 PD 115
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 2/169 (1%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D +FK++L+G+SGVGKS L F +++ D R + D + V L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 61 GQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKC 118
Q + + + +IV+ VTD+ SF+ V + L + ++ +LVGNK
Sbjct: 70 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 129
Query: 119 DLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
DL + VS E + A + +ETSA N + F I+ R
Sbjct: 130 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L +G GK+ +L + L ++TI V F + TV K VK +WD GQ+
Sbjct: 2 RILXLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGQD 55
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDLT 121
+ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI-ILIFANKQDLP 114
Query: 122 D 122
D
Sbjct: 115 D 115
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
+FK++L+G+SGVGKS L F ++ D R + D + V L ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 63 -ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDL 120
+ + + +IV+ VTD+ SF+ V + L + ++ +LVGNK DL
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 121 TDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
+ VS E + A + +ETSA N + F I+ R
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD G
Sbjct: 4 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 57
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 116
Query: 121 TD 122
D
Sbjct: 117 PD 118
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G G GK+ +L + + + I TIG F + TV+ K + +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 55
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTD 122
R R++ YYR G+I V D D+ ++ + ++ N L+ NK DL +
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD G
Sbjct: 3 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 56
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 115
Query: 121 TD 122
D
Sbjct: 116 PD 117
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G G GK+ +L + + + I TIG F + TV+ K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTD 122
R R++ YYR G+I V D D+ ++ + ++ N L+ NK DL +
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG-VDFKIRTVEQDGKTVKLQIWDTAGQ 62
++L++G GK+ +L + L ++TI V F + TV K VK +WD G
Sbjct: 14 MRILMLGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVTY--KNVKFNVWDVGGL 67
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDL 120
++ R + YY G G+I V D D++ + +Q L+ I DR + + L+ NK DL
Sbjct: 68 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 126
Query: 121 TD 122
D
Sbjct: 127 PD 128
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G G GK+ +L + + + I TIG F + TV+ K + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVETVQY--KNISFTVWDVGGQD 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTD 122
R R++ YYR G+I V D D+ ++ + ++ N L+ NK DL +
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+LL++G GK+ +L +F + +D+ T+G F I+T+E G KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGED-IDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 71
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 120
R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 129
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 220
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 119
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 277
Query: 120 LTDKKVVSYETAKAFADEIGI 140
L + A D++G+
Sbjct: 278 LPNAM-----NAAEITDKLGL 293
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+LL++G GK+ +L +F + +D+ T+G F I+T+E G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 120
R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+LL++G GK+ +L +F + +D+ T+G F I+T+E G KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQK 73
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 120
R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQDL 131
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 119
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 112
Query: 120 LTDKKVVSYETAKAFADEIGI 140
L + A D++G+
Sbjct: 113 LPNAM-----NAAEITDKLGL 128
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 119
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 129
Query: 120 LTDKKVVSYETAKAFADEIGI 140
L + A D++G+
Sbjct: 130 LPNAM-----NAAEITDKLGL 145
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 71
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 119
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 128
Query: 120 LTDKKVVSYETAKAFADEIGI 140
L + A D++G+
Sbjct: 129 LPNAM-----NAAEITDKLGL 144
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 6/156 (3%)
Query: 6 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65
L ++G G GKS L ++F ++ Y + + D + V L++ DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 66 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE---NVNKLLVGNKCDLTD 122
R Y AH ++VY V ++SF++ +L + +A E ++ LL+GNK D+
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 123 KKVVSYETAKAFADEIGIPFMETSA-KDSLNVEQAF 157
+ V+ A A G F E SA D +V+ F
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF 177
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 10/132 (7%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE---IDRYASENVNKLLVGNKCDL 120
R R + Y++ G+I V D D+E V L + +D + LL NK DL
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDEL--RDAVLLLFANKQDL 130
Query: 121 TDKKVVSYETAK 132
+ +S T K
Sbjct: 131 PNAMAISEMTDK 142
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 5 KLLLIGDSGVGKSCLL--LRFADDSYLDSYISTIGVDFK---IRTVEQDGKTVKLQIWDT 59
KL ++G++G GK+ LL L S L +T+G+D K I+ ++ + + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 60 AGQERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC 118
AG+E F + + + VYD++ Q + K WL I AS + +LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 119 DLTD---KKVVSYETAKAFADEIGIP 141
D++D +K + K ++ G P
Sbjct: 121 DVSDEKQRKACXSKITKELLNKRGFP 146
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 5 KLLLIGDSGVGKSCLL--LRFADDSYLDSYISTIGVDFK---IRTVEQDGKTVKLQIWDT 59
KL ++G++G GK+ LL L S L +T+G+D K I+ ++ + + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 60 AGQERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKC 118
AG+E F + + + VYD++ Q + K WL I AS + +LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 119 DLTD---KKVVSYETAKAFADEIGIP 141
D++D +K + K ++ G P
Sbjct: 123 DVSDEKQRKACXSKITKELLNKRGFP 148
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTD 122
+ R + YY+ II V D D++ ++ L + ++ N L+ NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 123 KKVVSYETAK 132
+S T K
Sbjct: 133 AMSISEVTEK 142
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 12/138 (8%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
++L++G GK+ +L + + + I TIG F + TVE + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTT-IPTIG--FNVETVE--FRNISFTVWDVGGQDK 73
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCDL 120
R + YY G+I V D D+E ++ ++ E+ R +E K L+ NK DL
Sbjct: 74 IRPLWRHYYSNTDGLIFVVDSNDRERIDDARE---ELHRMINEEELKDAIILVFANKQDL 130
Query: 121 TDKKVVSYETAKAFADEI 138
+ + T K + I
Sbjct: 131 PNAMSAAEVTEKLHLNTI 148
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
+ +LL++G GK+ +L +F + +D+ T+G F I+T+E G KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGL 55
Query: 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCD 119
+ R+ +Y+ G+I V D D++ + ++ L + +R A + L+ NK D
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL--LIFANKQD 113
Query: 120 L 120
L
Sbjct: 114 L 114
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGLD 57
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 119
+ R + Y++ G+I V D D+E N ++ E+ R +E+ + L+ NK D
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLLVFANKQD 114
Query: 120 LTDKKVVSYETAKAFADEIGI 140
L + A D++G+
Sbjct: 115 LPNAM-----NAAEITDKLGL 130
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 119
+ R + Y++ G+I V D D+E V++ +E+ + E+ + L+ NK D
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRE---RVQESADELQKMLQEDELRDAVLLVFANKQD 141
Query: 120 LTDKKVVSYETAKAFADEIGIPFMET 145
+ + VS D++G+ + +
Sbjct: 142 MPNAMPVS-----ELTDKLGLQHLRS 162
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 23/175 (13%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQT 57
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV---GNKCDL 120
R YY +I V D D++ K L + E + K ++ NK D+
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 115
Query: 121 TDKKVVSYETAKAFADEIGIP--------FMETSAKDSLNVEQAFMAMTADIKNR 167
T A+ +G+P +TSA +++A + +K+R
Sbjct: 116 EQAM-----TPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 165
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G GK+ +L + + + I TIG F + TVE K + +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 75
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK----LLVGNKCD 119
+ R + Y++ G+I V D D++ + +E+ R +E+ + L+ NK D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLLVFANKQD 132
Query: 120 LTDKKVVSYETAKAFADEIGI 140
L + A D++G+
Sbjct: 133 LPNAM-----NAAEITDKLGL 148
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 15 GKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYR 74
GK+ +L +F + +D+ T+G F I+T+E G KL IWD GQ+ R+ +Y+
Sbjct: 30 GKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFE 84
Query: 75 GAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASENVNKLLVGNKCDL 120
G+I V D D++ + ++ L + +R A + L+ NK DL
Sbjct: 85 STDGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATL--LIFANKQDL 131
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G G GK+ +L + + + I TIG F + V+ + +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIG--FNVECVQY--CNISFTVWDVGGQD 72
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 119
R R++ YY G+I V D D+ ++ + R +E N L+ NK D
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEARE---VMQRMLNEDELCNAAWLVFANKQD 129
Query: 120 LTD 122
L +
Sbjct: 130 LPE 132
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D ++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIG 69
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 96
GQ + R SY+ +I V D D++ F Q
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 105
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D ++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIG 68
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 96
GQ + R SY+ +I V D D++ F Q
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQ 104
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 96
R SY+ +I V D D++ F Q
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 19/162 (11%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++G GK+ +L +F+ + + + TIG + + + + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 78
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDLT 121
R+ ++YY +I+V D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDVK 136
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163
+ V+ EI TS KD QA A+T +
Sbjct: 137 ECMTVA---------EISQFLKLTSIKDHQWHIQACCALTGE 169
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 19/162 (11%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++G GK+ +L +F+ + + + TIG + + + + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQES 77
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDLT 121
R+ ++YY +I+V D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDVK 135
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163
+ V+ EI TS KD QA A+T +
Sbjct: 136 ECMTVA---------EISQFLKLTSIKDHQWHIQACCALTGE 168
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 19/162 (11%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++G GK+ +L +F+ + + + TIG + + E + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDLT 121
R+ ++YY +I+V D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDVK 130
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163
+ V+ EI TS KD QA A+T +
Sbjct: 131 ECMTVA---------EISQFLKLTSIKDHQWHIQACCALTGE 163
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 19/162 (11%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++G GK+ +L +F+ + + + TIG + + E + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVE----EIVINNTRFLMWDIGGQES 72
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCDLT 121
R+ ++YY +I+V D TD+E + ++ L ++ A E++ K L+ NK D+
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLIFANKQDVK 130
Query: 122 DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163
+ V+ EI TS KD QA A+T +
Sbjct: 131 ECMTVA---------EISQFLKLTSIKDHQWHIQACCALTGE 163
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 23/174 (13%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 59
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV---GNKCDL 120
R YY +I V D D++ K L + E + K ++ NK D+
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL--VAMLEEEELRKAILVVFANKQDM 117
Query: 121 TDKKVVSYETAKAFADEIGIP--------FMETSAKDSLNVEQAFMAMTADIKN 166
T+ A+ +G+P +TSA +++A + +K+
Sbjct: 118 EQAM-----TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 166
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
++L++G G GK+ +L R + + TIG F + T+ K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIG--FNVETLSY--KNLKLNVWDLGGQT 73
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN 99
R YY +I V D TD++ + + L+
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELH 109
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
K++++G GK+ +L +F + + + TIG + + V K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTS-PTIGSNVEEIVV----KNTHFLMWDIGGQES 72
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK---LLVGNKCD-- 119
R+ ++YY II+V D D+E K+ L + A E++ K L+ NK D
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRM--LAHEDLRKAAVLIFANKQDMK 130
Query: 120 --LTDKKVVSYETAKAFADE 137
+T ++ Y T + D
Sbjct: 131 GCMTAAEISKYLTLSSIKDH 150
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
++LL+G GK+ LL + A + S+I T F I++V+ G KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDI--SHI-TPTQGFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 96
R SY+ +I V D D++ F Q
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRFEETGQ 92
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
++L++G G GK+ +L R + + I TIG F + TV K +K Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDLTDK 123
R YY +I V D D++ K L L+V NK D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQA 123
Query: 124 KVVSYETAKAFADEIGIP--------FMETSAKDSLNVEQAFMAMTADIKNR 167
T+ A+ +G+P +TSA +++A + +K+R
Sbjct: 124 X-----TSSEXANSLGLPALKDRKWQIFKTSATKGTGLDEAXEWLVETLKSR 170
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGHEQ 91
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDLTD 122
R + +Y +GI+ + D D K LN + D S NV L++GNK D TD
Sbjct: 92 ARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETIS-NVPILILGNKIDRTD 150
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+L ++GD+ GKS L+ RF SY T +K + + DG+T + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKL---LVG--NKC 118
+ + A +I V+ + D+ SF V + ++ E L LVG ++
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 119 DLTDKKVVSYETAKAF-ADEIGIPFMETSAKDSLNVEQAF 157
+ +VV A+A AD + ET A LNV++ F
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVF 160
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
+L ++GD+ GKS L+ RF SY T +K + + DG+T + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAG-- 63
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKL---LVG--NKC 118
+ + A +I V+ + D+ SF V + ++ E L LVG ++
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 119 DLTDKKVVSYETAKAF-ADEIGIPFMETSAKDSLNVEQAF 157
+ +VV A+A AD + ET A LNV++ F
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVF 160
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
K+ ++G+ GKS L+ R+ +Y+ S G FK + + DG++ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASENVNKLLVGNKCDLT 121
+ + ++ V+ + D+ SF V + + R ASE V +LVG + ++
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE-VPMVLVGTQDAIS 132
Query: 122 --DKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157
+ +V+ A+ + ++ + ET A LNVE+ F
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G +
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 78
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 119
R + +Y +GI+ + D D E K+ E+D ++ NV L++GNK D
Sbjct: 79 ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKID 134
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 81
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 119
R + +Y +GI+ + D D E K+ E+D ++ NV L++GNK D
Sbjct: 82 ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKID 137
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 6 LLLIGDSGVGKSCLLLRF-ADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
+L +G GK+ ++ + ++ + + TIG F I + ++ ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSS--SLSFTVFDMSGQGR 79
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SENVNKLLVGNKCDLT 121
+R + YY+ II V D +D+ K+ L+ + + + L NK DL
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 122 D 122
D
Sbjct: 140 D 140
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64
KL+ +G GK+ LL DD L ++ T+ + T+ + +D G +
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEELTI----AGMTFTTFDLGGGIQ 72
Query: 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE----NVNKLLVGNKCD 119
R + +Y +GI+ + D D E K+ E+D ++ NV L++GNK D
Sbjct: 73 ARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPILILGNKID 128
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF------KIRTVEQDG--KTVKLQ 55
K+ LIGD GK+ LL + +++ T G++ I+ +E D K
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 56 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 115
WD GQE + ++ + ++ + D + +N WL I++Y ++ ++V
Sbjct: 102 FWDFGGQEIMHA-SHQFFMTRSSVYML--LLDSRTDSNKHYWLRHIEKYGGKS-PVIVVM 157
Query: 116 NKCD 119
NK D
Sbjct: 158 NKID 161
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 2 YLFKLLLIGDSGVGKSCLL-LRFADDSYLDSYIS--------TIGVDFKIRTVEQDGKTV 52
+ F L+++G+SG+GKS L+ F D Y + I T+ ++ +E+ G +
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 53 KLQIWDTAG-------QERFRTITS 70
+L + DT G ++ F+TI S
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIIS 120
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA 60
D ++L++G GK+ +L R D + V + T++ K + ++WD
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRL---HLGDVVTTVPTVGVNLETLQY--KNISFEVWDLG 74
Query: 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCD 119
GQ R Y+ +I V D TD++ K L +D L+ NK D
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 120 LTD 122
L D
Sbjct: 135 LPD 137
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 33.1 bits (74), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 2 YLFKLLLIGDSGVGKSCLLLR-FADDSYLDSYIS--------TIGVDFKIRTVEQDGKTV 52
+ F L ++G+SG+GKS L+ F D Y + IS T+ ++ +E+ G +
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 53 KLQIWDTAG-------QERFRTITS 70
+L + DT G ++ F+TI S
Sbjct: 77 RLTVVDTPGYGDAINCRDCFKTIIS 101
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 2 YLFKLLLIGDSGVGKSCLL-LRFADDSYLDSYIS--------TIGVDFKIRTVEQDGKTV 52
+ F L+++G+SG+GKS L+ F D Y + I T+ ++ +E+ G +
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 53 KLQIWDTAG-------QERFRTITS 70
+L + DT G ++ F+TI S
Sbjct: 64 RLTVVDTPGYGDAINCRDCFKTIIS 88
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 2 YLFKLLLIGDSGVGKSCLLLR-FADDSYLDSYIS--------TIGVDFKIRTVEQDGKTV 52
+ F L ++G+SG+GKS L+ F D Y + I T+ ++ +E+ G +
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 53 KLQIWDTAG-------QERFRTITS 70
+L + DT G ++ F+TI S
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIIS 120
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 88 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TDKKVVSYETAKAFADEIGIPF 142
+E + L +D + + V K DL TD + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 143 M 143
M
Sbjct: 182 M 182
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 88 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TDKKVVSYETAKAFADEIGIPF 142
+E + L +D + + V K DL TD + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 143 M 143
M
Sbjct: 182 M 182
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 88 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TDKKVVSYETAKAFADEIGIPF 142
+E + L +D + + V K DL TD + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 143 M 143
M
Sbjct: 182 M 182
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 88 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TDKKVVSYETAKAFADEIGIPF 142
+E + L +D + + V K DL TD + SYE AK FA+E G P
Sbjct: 123 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 181
Query: 143 M 143
M
Sbjct: 182 M 182
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 88 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TDKKVVSYETAKAFADEIGIPF 142
+E + L +D + + V K DL TD + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 143 M 143
M
Sbjct: 159 M 159
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 88 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TDKKVVSYETAKAFADEIGIPF 142
+E + L +D + + V K DL TD + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 143 M 143
M
Sbjct: 159 M 159
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 88 QESFNNVKQWLNEIDRYASENVNKLLVGNKCDL-----TDKKVVSYETAKAFADEIGIPF 142
+E + L +D + + V K DL TD + SYE AK FA+E G P
Sbjct: 100 EEGIKFIGPHLEHLDMFG-DKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGFPL 158
Query: 143 M 143
M
Sbjct: 159 M 159
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 5 KLLLIGDSGVGKSCLL-LRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63
KLLL+G SG GKS + + F++ S D+ +D + + G + L +WD GQ+
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQD 66
Query: 64 -----RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW---LNEIDRYA 105
F ++ +I V+DV E +++ + L ++ +Y+
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS 116
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 35 TIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV 94
T V + + T E+ V ++D G ++FR + +YY +I V D +D V
Sbjct: 48 TATVGYNVETFEKG--RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV 105
Query: 95 KQWLNEIDRYASENVNKLLVGN 116
K + + ++ E++ + L G
Sbjct: 106 KSEIQAMLKH--EDIRRELPGG 125
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI 140
++ D+ D ++ ++ + E N +LV NK DL KK + K E+G+
Sbjct: 84 VIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKK-MRKELGV 140
Query: 141 PFMETSAKDSLNVEQAFMAMTADIKNRMASQPAM 174
P + T+AK VE+ + + ++ + P +
Sbjct: 141 PVIPTNAKKGEGVEELKRMIALMAEGKVTTNPII 174
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 2 YLFKLLLIGDSGVGKSCLLLR-FADDSYLDSYI-------STIGVDFKIRTVEQDGKTVK 53
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 54 LQIWDTAG 61
L I DT G
Sbjct: 90 LTIVDTPG 97
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFAD--DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
F +L++G +GVGK+ + + A + S + G F+ VEQ LQ+W G
Sbjct: 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------LQVW---G 344
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNV 94
Q R + + GA +++D N+
Sbjct: 345 Q-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 376
>pdb|3T32|A Chain A, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
pdb|3T32|B Chain B, Crystal Structure Of A Putative C-S Lyase From Bacillus
Anthracis
Length = 383
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 63 ERFRTITSS--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN 108
E+ R +S Y +G HG+ I Q ++ WLNEI Y +N
Sbjct: 247 EKLRQAFTSIQYRQGFHGLNIFAYTAXQSAYTECNDWLNEIRFYIEDN 294
>pdb|3T12|A Chain A, Mgla In Complex With Mglb In Transition State
pdb|3T1O|A Chain A, Mgla Bound To Gdp
pdb|3T1O|B Chain B, Mgla Bound To Gdp
pdb|3T1Q|A Chain A, Mgla Bound To Gppnhp In Complex With Mglb
Length = 198
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 10/132 (7%)
Query: 46 EQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV------TDQESFNNVKQWLN 99
E G + ++ GQ + RG GI+ V D + ES N+++ L
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127
Query: 100 EIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAFM 158
E ++V ++ NK DL D + E +A D G P +E A + V +
Sbjct: 128 EYG-LTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLK 184
Query: 159 AMTADIKNRMAS 170
++ + R+A
Sbjct: 185 EVSRLVLARVAG 196
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human
Grlf1 (P190rhogap)
Length = 255
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 10 GDSGVGKSCLLLRF----ADDSYLDSYISTIGVDFKIRTVEQD 48
G G+GKSCL RF AD+ +LD DF R V D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNND 77
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 2 YLFKLLLIGDSGVGKSCLL-LRFADDSYLDSYIS-------TIGVDFKIRTVEQDGKTVK 53
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 61
Query: 54 LQIWDTAG 61
L I DT G
Sbjct: 62 LTIVDTPG 69
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 2 YLFKLLLIGDSGVGKSCLL-LRFADDSYLDSYIS-------TIGVDFKIRTVEQDGKTVK 53
+ F L+++G+SG+GKS L+ F D Y Y T+ V+ +++ G +
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 54 LQIWDTAG 61
L I DT G
Sbjct: 67 LTIVDTPG 74
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125
+V + D FN WL + R+ N LLVGNK DL K V
Sbjct: 72 LVVKIVDIFDFNG--SWLPGLHRFVGNN-KVLLVGNKADLIPKSV 113
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 108 NVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNR 167
NV+ +L NK DL +KV S K F D G P L Q ++ D K R
Sbjct: 266 NVSIILFLNKMDLLVEKVKSVSIKKHFPDFKGDP-------HRLEDVQRYLVQCFDRKRR 318
Query: 168 MASQPAMNN 176
S+P ++
Sbjct: 319 NRSKPLFHH 327
>pdb|3T1T|A Chain A, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|B Chain B, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|C Chain C, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1T|D Chain D, Mgla Bound To Gdp In P1 Tetrameric Arrangement
pdb|3T1V|A Chain A, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|B Chain B, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|C Chain C, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
pdb|3T1V|D Chain D, Mgla Bound To Gdp In P2(1) Tetrameric Arrangement
Length = 198
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 10/132 (7%)
Query: 46 EQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV------TDQESFNNVKQWLN 99
E G + ++ GQ + RG GI+ V D + ES N ++ L
Sbjct: 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESXRNXRENLA 127
Query: 100 EIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAFM 158
E ++V ++ NK DL D + E +A D G P +E A + V +
Sbjct: 128 EYG-LTLDDVPIVIQVNKRDLPD--ALPVEXVRAVVDPEGKFPVLEAVATEGKGVFETLK 184
Query: 159 AMTADIKNRMAS 170
++ + R+A
Sbjct: 185 EVSRLVLARVAG 196
>pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
pdb|2WEY|B Chain B, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of
Cross-Linked Protein Crystals
Length = 343
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 122 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 181
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 182 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 211
>pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
pdb|4DFF|B Chain B, The Sar Development Of Dihydroimidazoisoquinoline
Derivatives As Phosphodiesterase 10a Inhibitors For The
Treatment Of Schizophrenia
Length = 352
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 131 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 190
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 191 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 220
>pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SN7|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNI|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|A Chain A, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|3SNL|B Chain B, Highly Potent, Selective, And Orally Active
Phosphodiestarase 10a Inhibitors
pdb|4FCB|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCB|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|A Chain A, Potent And Selective Phosphodiesterase 10a Inhibitors
pdb|4FCD|B Chain B, Potent And Selective Phosphodiesterase 10a Inhibitors
Length = 345
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 124 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 183
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 184 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 213
>pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
pdb|3UI7|B Chain B, Discovery Of Orally Active Pyrazoloquinoline As A Potent
Pde10 Inhibitor For The Management Of Schizophrenia
Length = 333
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 131 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 190
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 191 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 220
>pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5
pdb|4AEL|B Chain B, Pde10a In Complex With The Inhibitor Az5
Length = 344
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 183 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 212
>pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
pdb|3UUO|B Chain B, The Discovery Of Potent, Selectivity, And Orally
Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For
The Treatment Of Schizophrenia
Length = 337
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 135 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 194
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 195 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 224
>pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor
pdb|4DDL|B Chain B, Pde10a Crystal Structure Complexed With Novel Inhibitor
Length = 338
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 117 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 176
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 177 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 206
>pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUR|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Camp
pdb|2OUS|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUS|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a
pdb|2OUU|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
pdb|2OUU|B Chain B, Crystal Structure Of Pde10a2 Mutant D674a In Complex With
Cgmp
Length = 331
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 183 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 212
>pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HEU|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
((1-(3-(4-
((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2-
Yl)piperidin-4- Yl)methanol)
pdb|4HF4|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
pdb|4HF4|B Chain B, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor
(1-(1-(3-(4-
(Benzo[d]thiazol-2-Ylamino)phenoxy)pyrazin-2-
Yl)piperidin-4-Yl) Ethanol)
Length = 318
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 117 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 176
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 177 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 206
>pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUV|B Chain B, Crystal Structure Of Pde10a2 Mutant Of D564n
pdb|2OUY|A Chain A, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp.
pdb|2OUY|B Chain B, Crystal Structure Of Pde10a2 Mutant D564a In Complex With
Camp
Length = 331
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 183 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 212
>pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUN|B Chain B, Crystal Structure Of Pde10a2 In Complex With Amp
pdb|2OUP|A Chain A, Crystal Structure Of Pde10a
pdb|2OUP|B Chain B, Crystal Structure Of Pde10a
pdb|2OUQ|A Chain A, Crystal Structure Of Pde10a2 In Complex With Gmp
pdb|2OUQ|B Chain B, Crystal Structure Of Pde10a2 In Complex With Gmp
Length = 331
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 123 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 182
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 183 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 212
>pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation.
pdb|2Y0J|B Chain B, Triazoloquinazolines As A Novel Class Of Phosphodiesterase
10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation
Length = 340
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 22 RFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI-- 79
R +SYL + + + T+EQ + + I G F T++SS Y I
Sbjct: 127 RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYEQVLEIIR 186
Query: 80 --IIVYDVTDQESFNNVKQWLNEIDRYASENVN 110
II D+ F N KQ L E+ + S N+N
Sbjct: 187 KAIIATDLA--LYFGNRKQ-LEEMYQTGSLNLN 216
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 7 LLIGDSGVG-KSCLLLRFADDS---YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62
++IG S +G K+ + + ADD +++SY +GVD V+Q+G L +
Sbjct: 50 IVIGSSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSP 109
Query: 63 E 63
E
Sbjct: 110 E 110
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFAD--DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
F +L++G +GVGK+ + + A + S + G F+ VEQ LQ+W G
Sbjct: 94 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------LQVW---G 144
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNV 94
Q R + + GA +++D N+
Sbjct: 145 Q-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 176
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFAD--DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
F +L++G +GVGK+ + + A + S + G F+ VEQ LQ+W G
Sbjct: 99 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------LQVW---G 149
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNV 94
Q R + + GA +++D N+
Sbjct: 150 Q-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 181
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 4 FKLLLIGDSGVGKSCLLLRFAD--DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61
F +L++G +GVGK+ + + A + S + G F+ VEQ LQ+W G
Sbjct: 100 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ------LQVW---G 150
Query: 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNV 94
Q R + + GA +++D N+
Sbjct: 151 Q-RNNIPVIAQHTGADSASVIFDAIQAAKARNI 182
>pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
pdb|2UZ8|B Chain B, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
Length = 174
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 73 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY 104
Y G H I+ V ++E + NV +W I Y
Sbjct: 121 YYGLHRFIVDLTVQEKEKYLNVSRWFCHIQHY 152
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 120 LTDKKVVSYETAKAFADEIGIPFME 144
L ++ YE KA+ D++GIP+ E
Sbjct: 227 LNEESKAYYEQVKAYLDDLGIPYTE 251
>pdb|3CIH|A Chain A, Crystal Structure Of A Putative Alpha-Rhamnosidase From
Bacteroides Thetaiotaomicron
Length = 739
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 174 MNNARPPTVQIKGQPVNQKAS 194
N A PPT+ +KG+ VN +S
Sbjct: 111 WNQATPPTIYVKGKTVNSDSS 131
>pdb|3N9T|A Chain A, Cryatal Structure Of Hydroxyquinol 1,2-Dioxygenase From
Pseudomonas Putida Dll-E4
Length = 290
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 57 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK 95
++T+ RF+ I S R H + ++T+QE F ++
Sbjct: 20 FETSPNPRFKQIMQSLVRHLHDFVSEVELTEQEWFEGIR 58
>pdb|3O3M|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|C Chain C, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|A Chain A, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 408
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 25/92 (27%)
Query: 68 ITSSYYRGAHGIIIVYDVTDQES--------FNNVKQWLNEIDRYASENVNKLLVGNKCD 119
+T S Y H + Y+V D + FNNV +DR V+ L+ G KCD
Sbjct: 285 MTGSVY--PHAWALQYEVNDLDGMAVAYSTMFNNVN-----LDRMTKYRVDSLVEG-KCD 336
Query: 120 ---------LTDKKVVSYETAKAFADEIGIPF 142
++ YE + A+E G+P+
Sbjct: 337 GAFYHMNRSCKLMSLIQYEMQRRAAEETGLPY 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,450,300
Number of Sequences: 62578
Number of extensions: 205549
Number of successful extensions: 1508
Number of sequences better than 100.0: 401
Number of HSP's better than 100.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 404
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)