Query 043946
Match_columns 198
No_of_seqs 133 out of 1884
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 09:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.2E-45 2.6E-50 253.1 20.9 197 1-197 7-205 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 1.7E-42 3.6E-47 236.8 19.8 196 2-197 4-200 (200)
3 KOG0078 GTP-binding protein SE 100.0 7.6E-41 1.6E-45 232.7 20.8 171 1-171 10-180 (207)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2.2E-40 4.7E-45 226.6 18.6 195 3-197 22-221 (221)
5 KOG0080 GTPase Rab18, small G 100.0 2.8E-40 6E-45 219.2 17.8 169 1-169 9-178 (209)
6 KOG0098 GTPase Rab2, small G p 100.0 2.7E-39 5.8E-44 219.6 18.7 170 1-170 4-173 (216)
7 cd04120 Rab12 Rab12 subfamily. 100.0 1.3E-38 2.7E-43 229.1 23.3 165 4-168 1-166 (202)
8 PLN03110 Rab GTPase; Provision 100.0 4.9E-38 1.1E-42 229.2 24.3 198 1-198 10-216 (216)
9 KOG0394 Ras-related GTPase [Ge 100.0 5.8E-39 1.3E-43 217.6 16.8 193 3-196 9-208 (210)
10 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 6.3E-38 1.4E-42 226.5 22.6 193 4-196 1-201 (201)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 3.1E-38 6.7E-43 218.8 19.5 170 1-170 12-181 (222)
12 cd04110 Rab35 Rab35 subfamily. 100.0 1.5E-37 3.3E-42 224.1 23.9 195 1-196 4-199 (199)
13 cd04121 Rab40 Rab40 subfamily. 100.0 1.1E-37 2.4E-42 222.3 22.7 168 1-169 4-171 (189)
14 cd04126 Rab20 Rab20 subfamily. 100.0 2.4E-37 5.3E-42 224.8 21.9 187 4-196 1-220 (220)
15 cd04112 Rab26 Rab26 subfamily. 100.0 7E-37 1.5E-41 219.4 22.3 190 4-196 1-191 (191)
16 KOG0079 GTP-binding protein H- 100.0 2.4E-38 5.3E-43 207.2 13.0 191 2-196 7-198 (198)
17 cd04144 Ras2 Ras2 subfamily. 100.0 5E-37 1.1E-41 220.0 20.9 185 5-197 1-188 (190)
18 cd01867 Rab8_Rab10_Rab13_like 100.0 2.5E-36 5.4E-41 212.2 21.4 166 1-166 1-166 (167)
19 cd04125 RabA_like RabA-like su 100.0 6.9E-36 1.5E-40 213.8 23.4 185 4-196 1-185 (188)
20 cd04122 Rab14 Rab14 subfamily. 100.0 3.6E-36 7.7E-41 211.2 21.5 165 2-166 1-165 (166)
21 KOG0091 GTPase Rab39, small G 100.0 4.3E-37 9.3E-42 204.6 14.9 197 1-197 6-213 (213)
22 cd04111 Rab39 Rab39 subfamily. 100.0 2.1E-35 4.6E-40 214.5 23.8 171 2-172 1-173 (211)
23 cd04118 Rab24 Rab24 subfamily. 100.0 3.5E-35 7.7E-40 211.0 23.8 188 4-196 1-193 (193)
24 KOG0086 GTPase Rab4, small G p 100.0 2.4E-36 5.3E-41 199.0 15.7 177 1-177 7-183 (214)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.9E-35 4.1E-40 208.5 21.2 166 3-169 2-168 (172)
26 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.2E-35 4.9E-40 207.1 21.4 165 2-166 1-165 (166)
27 PTZ00369 Ras-like protein; Pro 100.0 2.1E-35 4.6E-40 211.4 21.2 168 3-171 5-173 (189)
28 cd04133 Rop_like Rop subfamily 100.0 3.3E-35 7.2E-40 207.4 20.8 160 4-165 2-173 (176)
29 PLN03108 Rab family protein; P 100.0 1.1E-34 2.4E-39 210.7 24.1 169 1-169 4-172 (210)
30 cd04127 Rab27A Rab27a subfamil 100.0 4E-35 8.6E-40 208.5 21.3 167 1-167 2-179 (180)
31 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.9E-35 6.3E-40 208.9 20.4 162 2-165 4-180 (182)
32 KOG0093 GTPase Rab3, small G p 100.0 6.2E-36 1.4E-40 195.7 15.5 171 1-171 19-189 (193)
33 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 8.9E-35 1.9E-39 212.5 23.2 164 2-167 12-190 (232)
34 cd04109 Rab28 Rab28 subfamily. 100.0 6.9E-35 1.5E-39 212.6 22.5 164 4-167 1-168 (215)
35 cd04117 Rab15 Rab15 subfamily. 100.0 4.3E-35 9.3E-40 204.7 20.5 160 4-163 1-160 (161)
36 cd01866 Rab2 Rab2 subfamily. 100.0 8E-35 1.7E-39 204.8 21.8 166 1-166 2-167 (168)
37 cd01865 Rab3 Rab3 subfamily. 100.0 8.2E-35 1.8E-39 204.1 21.7 163 4-166 2-164 (165)
38 cd01868 Rab11_like Rab11-like. 100.0 7.9E-35 1.7E-39 204.1 21.3 164 1-164 1-164 (165)
39 cd01875 RhoG RhoG subfamily. 100.0 1E-34 2.2E-39 208.1 22.0 163 2-166 2-178 (191)
40 KOG0088 GTPase Rab21, small G 100.0 5.7E-36 1.2E-40 198.4 13.6 167 2-168 12-178 (218)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 9.6E-35 2.1E-39 204.0 20.6 162 4-165 1-167 (168)
42 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-34 2.6E-39 205.2 20.6 161 3-165 1-176 (178)
43 cd01864 Rab19 Rab19 subfamily. 100.0 1.5E-34 3.2E-39 202.8 20.8 163 1-163 1-164 (165)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.5E-34 7.5E-39 203.6 20.8 162 4-166 1-167 (182)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.7E-34 1.5E-38 206.9 22.2 164 4-169 2-180 (222)
46 PF00071 Ras: Ras family; Int 100.0 4E-34 8.6E-39 200.0 20.3 161 5-165 1-161 (162)
47 PLN03118 Rab family protein; P 100.0 1.5E-33 3.3E-38 205.1 23.7 166 2-168 13-180 (211)
48 KOG0095 GTPase Rab30, small G 100.0 8.1E-35 1.7E-39 191.2 15.2 169 2-170 6-174 (213)
49 cd04136 Rap_like Rap-like subf 100.0 5.9E-34 1.3E-38 199.2 19.8 160 4-164 2-162 (163)
50 smart00175 RAB Rab subfamily o 100.0 1.1E-33 2.4E-38 198.0 20.9 163 4-166 1-163 (164)
51 cd04132 Rho4_like Rho4-like su 100.0 9.9E-34 2.1E-38 202.5 21.1 166 4-171 1-173 (187)
52 cd04113 Rab4 Rab4 subfamily. 100.0 7.7E-34 1.7E-38 198.4 20.0 160 4-163 1-160 (161)
53 cd01874 Cdc42 Cdc42 subfamily. 100.0 9.9E-34 2.1E-38 200.3 20.8 160 3-164 1-174 (175)
54 PLN03071 GTP-binding nuclear p 100.0 1E-33 2.2E-38 206.7 21.3 165 2-169 12-176 (219)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 1.1E-33 2.3E-38 198.2 19.6 161 4-165 2-163 (164)
56 cd00877 Ran Ran (Ras-related n 100.0 2E-33 4.4E-38 197.2 20.8 160 4-166 1-160 (166)
57 cd04134 Rho3 Rho3 subfamily. 100.0 2.9E-33 6.2E-38 200.3 21.8 161 4-166 1-175 (189)
58 cd04106 Rab23_lke Rab23-like s 100.0 2.8E-33 6.1E-38 195.6 20.1 159 4-163 1-161 (162)
59 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4.4E-33 9.5E-38 196.1 21.0 162 5-166 2-166 (170)
60 cd04116 Rab9 Rab9 subfamily. 100.0 3.9E-33 8.4E-38 196.5 20.8 161 2-163 4-169 (170)
61 cd01860 Rab5_related Rab5-rela 100.0 6.2E-33 1.3E-37 194.1 21.1 162 3-164 1-162 (163)
62 cd04115 Rab33B_Rab33A Rab33B/R 100.0 5.8E-33 1.2E-37 195.7 21.0 163 2-164 1-168 (170)
63 cd04176 Rap2 Rap2 subgroup. T 100.0 3.9E-33 8.5E-38 195.2 19.9 161 3-164 1-162 (163)
64 cd04124 RabL2 RabL2 subfamily. 100.0 6E-33 1.3E-37 193.9 20.7 160 4-167 1-160 (161)
65 cd01861 Rab6 Rab6 subfamily. 100.0 5.1E-33 1.1E-37 194.1 20.2 160 4-163 1-160 (161)
66 cd04140 ARHI_like ARHI subfami 100.0 6E-33 1.3E-37 194.7 20.2 158 4-162 2-162 (165)
67 smart00173 RAS Ras subfamily o 100.0 4.9E-33 1.1E-37 194.8 19.7 161 4-165 1-162 (164)
68 cd01871 Rac1_like Rac1-like su 100.0 6.3E-33 1.4E-37 196.0 20.2 159 3-163 1-173 (174)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.1E-32 2.5E-37 192.3 20.2 160 3-164 1-161 (162)
70 cd04145 M_R_Ras_like M-Ras/R-R 100.0 1.9E-32 4.2E-37 191.7 20.6 161 3-164 2-163 (164)
71 cd04142 RRP22 RRP22 subfamily. 100.0 1.6E-32 3.4E-37 197.4 20.6 166 4-169 1-178 (198)
72 cd04123 Rab21 Rab21 subfamily. 100.0 2.7E-32 5.8E-37 190.4 21.0 161 4-164 1-161 (162)
73 smart00176 RAN Ran (Ras-relate 100.0 2.4E-32 5.1E-37 196.3 20.6 158 9-169 1-158 (200)
74 KOG0097 GTPase Rab14, small G 100.0 1.2E-32 2.6E-37 179.6 17.0 196 2-197 10-215 (215)
75 KOG0081 GTPase Rab27, small G 100.0 1.3E-34 2.9E-39 192.0 7.8 195 1-195 7-216 (219)
76 cd01862 Rab7 Rab7 subfamily. 100.0 4.7E-32 1E-36 191.1 21.3 165 4-168 1-170 (172)
77 cd04101 RabL4 RabL4 (Rab-like4 100.0 4.6E-32 1E-36 189.9 20.3 160 4-164 1-163 (164)
78 cd04143 Rhes_like Rhes_like su 100.0 3.5E-32 7.5E-37 201.3 20.1 161 4-165 1-171 (247)
79 cd01892 Miro2 Miro2 subfamily. 100.0 4.4E-32 9.6E-37 190.9 18.4 162 2-165 3-166 (169)
80 cd01863 Rab18 Rab18 subfamily. 100.0 1.4E-31 3E-36 186.9 20.6 159 4-163 1-160 (161)
81 smart00174 RHO Rho (Ras homolo 100.0 8.8E-32 1.9E-36 190.2 19.4 159 6-166 1-173 (174)
82 cd04114 Rab30 Rab30 subfamily. 100.0 2.4E-31 5.3E-36 187.1 21.5 163 2-164 6-168 (169)
83 cd01873 RhoBTB RhoBTB subfamil 100.0 1.2E-31 2.5E-36 192.3 20.0 158 3-163 2-194 (195)
84 cd04146 RERG_RasL11_like RERG/ 100.0 7.2E-32 1.6E-36 189.2 17.9 160 5-165 1-164 (165)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 2.6E-31 5.6E-36 186.9 20.6 161 4-165 2-164 (168)
86 cd04148 RGK RGK subfamily. Th 100.0 2.6E-31 5.6E-36 194.3 21.0 164 4-169 1-167 (221)
87 cd00154 Rab Rab family. Rab G 100.0 2E-31 4.4E-36 185.0 19.5 158 4-161 1-158 (159)
88 cd04103 Centaurin_gamma Centau 100.0 2.5E-31 5.3E-36 184.9 19.2 153 4-163 1-157 (158)
89 cd04135 Tc10 TC10 subfamily. 100.0 8.8E-31 1.9E-35 185.1 20.8 159 4-164 1-173 (174)
90 cd04130 Wrch_1 Wrch-1 subfamil 100.0 8.3E-31 1.8E-35 185.1 20.6 157 4-162 1-171 (173)
91 cd04147 Ras_dva Ras-dva subfam 100.0 7.7E-31 1.7E-35 189.1 19.3 167 5-172 1-170 (198)
92 cd04139 RalA_RalB RalA/RalB su 100.0 1.6E-30 3.4E-35 181.9 20.4 162 4-166 1-163 (164)
93 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.3E-33 1.8E-37 178.4 7.0 189 7-196 1-190 (192)
94 cd00876 Ras Ras family. The R 100.0 1.6E-30 3.4E-35 181.1 18.7 158 5-163 1-159 (160)
95 cd04137 RheB Rheb (Ras Homolog 100.0 9.5E-30 2.1E-34 180.8 21.0 164 4-168 2-166 (180)
96 cd04129 Rho2 Rho2 subfamily. 100.0 1.3E-29 2.8E-34 181.1 21.5 161 4-166 2-174 (187)
97 PLN00223 ADP-ribosylation fact 100.0 4.8E-30 1E-34 182.3 17.6 159 2-167 16-180 (181)
98 cd01870 RhoA_like RhoA-like su 100.0 2.6E-29 5.6E-34 177.8 20.9 159 4-164 2-174 (175)
99 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 9.5E-30 2.1E-34 181.2 18.3 164 3-169 3-174 (183)
100 KOG0395 Ras-related GTPase [Ge 100.0 1.6E-29 3.6E-34 180.3 18.6 167 2-169 2-169 (196)
101 cd04158 ARD1 ARD1 subfamily. 100.0 1.1E-29 2.5E-34 178.7 17.4 155 5-166 1-162 (169)
102 cd04149 Arf6 Arf6 subfamily. 100.0 6.9E-30 1.5E-34 179.5 16.1 153 3-162 9-167 (168)
103 cd00157 Rho Rho (Ras homology) 100.0 4.7E-29 1E-33 175.6 20.1 157 4-162 1-170 (171)
104 smart00177 ARF ARF-like small 100.0 1.9E-29 4.1E-34 178.5 17.6 157 2-165 12-174 (175)
105 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.1E-30 4.6E-35 181.5 11.7 153 5-162 1-163 (164)
106 PTZ00133 ADP-ribosylation fact 100.0 5.1E-29 1.1E-33 177.2 18.2 159 3-168 17-181 (182)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 3.9E-29 8.4E-34 174.2 17.2 152 4-162 1-158 (159)
108 cd01893 Miro1 Miro1 subfamily. 100.0 6.5E-29 1.4E-33 174.3 18.1 160 4-166 1-165 (166)
109 cd04154 Arl2 Arl2 subfamily. 100.0 4.5E-29 9.8E-34 176.3 16.7 154 2-162 13-172 (173)
110 PTZ00132 GTP-binding nuclear p 100.0 2.1E-28 4.6E-33 178.5 20.7 163 2-167 8-170 (215)
111 KOG0393 Ras-related small GTPa 100.0 3.8E-29 8.2E-34 175.0 13.6 164 2-167 3-181 (198)
112 KOG4252 GTP-binding protein [S 100.0 1.2E-30 2.5E-35 176.6 5.1 169 1-170 18-186 (246)
113 cd04157 Arl6 Arl6 subfamily. 100.0 1.9E-28 4.2E-33 171.1 16.0 152 5-162 1-161 (162)
114 cd04102 RabL3 RabL3 (Rab-like3 100.0 4.5E-28 9.7E-33 174.1 17.8 148 4-151 1-176 (202)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 8.2E-29 1.8E-33 174.0 12.6 151 5-162 1-166 (167)
116 PF00025 Arf: ADP-ribosylation 100.0 1.3E-27 2.8E-32 168.9 18.4 156 2-164 13-175 (175)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.8E-28 1.3E-32 170.7 16.0 153 3-162 15-173 (174)
118 PTZ00099 rab6; Provisional 100.0 2.8E-27 6E-32 167.0 19.1 145 26-170 3-147 (176)
119 KOG0073 GTP-binding ADP-ribosy 100.0 2E-27 4.4E-32 158.5 17.0 160 1-167 14-180 (185)
120 cd00879 Sar1 Sar1 subfamily. 100.0 1.2E-27 2.6E-32 171.4 16.6 155 2-163 18-189 (190)
121 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6.5E-28 1.4E-32 169.3 14.8 152 5-162 1-166 (167)
122 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.8E-28 1.5E-32 168.0 14.0 152 5-162 1-159 (160)
123 cd04151 Arl1 Arl1 subfamily. 100.0 4.2E-27 9.1E-32 163.8 17.1 151 5-162 1-157 (158)
124 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.7E-27 3.6E-32 165.8 13.7 151 5-162 1-157 (158)
125 PLN00023 GTP-binding protein; 100.0 2.5E-26 5.3E-31 172.9 20.5 178 2-179 20-244 (334)
126 cd01897 NOG NOG1 is a nucleola 100.0 1E-26 2.2E-31 163.4 16.4 155 5-164 2-167 (168)
127 smart00178 SAR Sar1p-like memb 100.0 1.2E-26 2.6E-31 165.4 16.5 154 3-163 17-183 (184)
128 cd01890 LepA LepA subfamily. 99.9 2.9E-26 6.3E-31 162.7 15.5 154 5-164 2-176 (179)
129 PRK12299 obgE GTPase CgtA; Rev 99.9 5.8E-26 1.2E-30 174.3 18.1 162 4-166 159-329 (335)
130 cd01898 Obg Obg subfamily. Th 99.9 2.4E-26 5.2E-31 161.7 14.7 157 5-163 2-169 (170)
131 cd04159 Arl10_like Arl10-like 99.9 7.9E-26 1.7E-30 156.9 16.8 152 5-162 1-158 (159)
132 TIGR00231 small_GTP small GTP- 99.9 3E-25 6.4E-30 153.7 17.7 158 3-161 1-160 (161)
133 cd01878 HflX HflX subfamily. 99.9 6.2E-26 1.3E-30 164.3 14.4 155 2-163 40-203 (204)
134 cd04171 SelB SelB subfamily. 99.9 1.6E-25 3.4E-30 156.5 15.5 152 4-162 1-163 (164)
135 cd04155 Arl3 Arl3 subfamily. 99.9 8.7E-25 1.9E-29 154.3 17.4 151 2-162 13-172 (173)
136 cd01879 FeoB Ferrous iron tran 99.9 7.5E-25 1.6E-29 152.2 15.7 147 8-163 1-155 (158)
137 TIGR02528 EutP ethanolamine ut 99.9 1.8E-25 4E-30 152.9 11.9 134 5-161 2-141 (142)
138 KOG0070 GTP-binding ADP-ribosy 99.9 6.4E-25 1.4E-29 150.2 14.1 157 3-166 17-179 (181)
139 PF02421 FeoB_N: Ferrous iron 99.9 1.2E-25 2.6E-30 153.6 10.4 148 4-160 1-156 (156)
140 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9.1E-25 2E-29 153.3 14.4 157 5-165 2-166 (168)
141 COG1100 GTPase SAR1 and relate 99.9 8E-24 1.7E-28 154.8 19.4 167 3-169 5-189 (219)
142 cd00882 Ras_like_GTPase Ras-li 99.9 4.8E-24 1E-28 146.4 16.7 153 8-161 1-156 (157)
143 TIGR02729 Obg_CgtA Obg family 99.9 2.7E-24 5.8E-29 165.0 16.8 159 4-164 158-328 (329)
144 PRK03003 GTP-binding protein D 99.9 2.1E-24 4.5E-29 173.8 15.6 179 3-194 38-226 (472)
145 TIGR03156 GTP_HflX GTP-binding 99.9 4.2E-24 9.2E-29 165.3 16.7 153 3-163 189-350 (351)
146 PRK04213 GTP-binding protein; 99.9 9E-25 1.9E-29 157.9 11.5 154 2-168 8-195 (201)
147 cd01891 TypA_BipA TypA (tyrosi 99.9 3.2E-24 7E-29 154.1 13.4 158 5-166 4-189 (194)
148 cd01881 Obg_like The Obg-like 99.9 2.6E-24 5.6E-29 152.1 12.5 154 8-163 1-175 (176)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.5E-23 5.5E-28 144.2 15.7 146 4-164 2-156 (157)
150 PRK03003 GTP-binding protein D 99.9 2.9E-24 6.3E-29 172.9 12.4 162 2-169 210-386 (472)
151 TIGR00436 era GTP-binding prot 99.9 1.3E-23 2.7E-28 158.2 15.1 153 5-165 2-164 (270)
152 PRK12296 obgE GTPase CgtA; Rev 99.9 3.7E-23 7.9E-28 164.6 17.3 163 4-169 160-344 (500)
153 TIGR00487 IF-2 translation ini 99.9 3.1E-23 6.8E-28 169.3 17.3 153 2-162 86-247 (587)
154 PRK12297 obgE GTPase CgtA; Rev 99.9 8.3E-23 1.8E-27 160.7 18.6 159 5-168 160-330 (424)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 5.5E-23 1.2E-27 163.3 17.8 153 2-168 202-363 (442)
156 PF08477 Miro: Miro-like prote 99.9 3E-23 6.5E-28 137.7 12.2 114 5-119 1-119 (119)
157 KOG0071 GTP-binding ADP-ribosy 99.9 4.9E-23 1.1E-27 134.2 12.7 156 3-165 17-178 (180)
158 cd00881 GTP_translation_factor 99.9 6.1E-23 1.3E-27 146.6 14.6 154 5-164 1-186 (189)
159 cd01889 SelB_euk SelB subfamil 99.9 2.6E-23 5.6E-28 149.2 12.7 158 4-165 1-186 (192)
160 PRK05291 trmE tRNA modificatio 99.9 4.8E-23 1E-27 164.5 15.4 148 3-166 215-371 (449)
161 cd01894 EngA1 EngA1 subfamily. 99.9 3.9E-23 8.4E-28 143.3 13.0 146 7-163 1-156 (157)
162 TIGR03594 GTPase_EngA ribosome 99.9 4.1E-23 9E-28 165.1 14.9 159 3-168 172-347 (429)
163 KOG3883 Ras family small GTPas 99.9 2.7E-22 5.9E-27 132.7 16.1 171 3-174 9-184 (198)
164 PRK11058 GTPase HflX; Provisio 99.9 1.1E-22 2.3E-27 160.9 16.2 157 4-166 198-363 (426)
165 PRK15494 era GTPase Era; Provi 99.9 1.9E-22 4E-27 155.9 17.1 155 2-166 51-217 (339)
166 TIGR01393 lepA GTP-binding pro 99.9 1.1E-22 2.5E-27 166.8 16.3 157 3-165 3-180 (595)
167 PRK05306 infB translation init 99.9 1.8E-22 3.8E-27 168.6 17.3 153 2-163 289-450 (787)
168 PRK15467 ethanolamine utilizat 99.9 1E-22 2.2E-27 141.6 13.2 142 5-168 3-150 (158)
169 cd01895 EngA2 EngA2 subfamily. 99.9 3.6E-22 7.9E-27 140.5 16.2 155 3-163 2-173 (174)
170 PRK00093 GTP-binding protein D 99.9 1.8E-22 3.8E-27 161.7 15.6 175 4-194 2-188 (435)
171 PRK12298 obgE GTPase CgtA; Rev 99.9 5.4E-22 1.2E-26 155.2 17.8 161 5-167 161-335 (390)
172 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-22 3.1E-27 162.0 14.9 177 5-194 1-187 (429)
173 CHL00189 infB translation init 99.9 2E-22 4.3E-27 167.0 15.5 156 2-164 243-409 (742)
174 KOG0075 GTP-binding ADP-ribosy 99.9 5.9E-23 1.3E-27 134.9 9.7 158 3-166 20-183 (186)
175 COG1160 Predicted GTPases [Gen 99.9 1.7E-22 3.7E-27 156.1 13.3 179 4-194 4-193 (444)
176 PRK00454 engB GTP-binding prot 99.9 3.6E-22 7.8E-27 143.6 14.1 157 2-165 23-194 (196)
177 PRK09518 bifunctional cytidyla 99.9 7.8E-22 1.7E-26 165.7 17.0 181 3-194 275-465 (712)
178 TIGR00475 selB selenocysteine- 99.9 5.8E-22 1.3E-26 162.4 15.7 154 4-166 1-167 (581)
179 PF00009 GTP_EFTU: Elongation 99.9 1.5E-22 3.2E-27 144.8 10.7 157 2-164 2-186 (188)
180 cd04163 Era Era subfamily. Er 99.9 1.4E-21 3E-26 136.6 15.1 156 3-163 3-167 (168)
181 cd01888 eIF2_gamma eIF2-gamma 99.9 5.5E-22 1.2E-26 143.4 12.8 159 4-164 1-198 (203)
182 PRK00089 era GTPase Era; Revie 99.9 1.4E-21 3.1E-26 148.8 15.2 157 4-165 6-171 (292)
183 cd04105 SR_beta Signal recogni 99.9 2.7E-21 5.9E-26 139.6 15.5 118 5-123 2-124 (203)
184 TIGR00437 feoB ferrous iron tr 99.9 1.6E-21 3.4E-26 160.1 15.4 146 10-164 1-154 (591)
185 KOG0076 GTP-binding ADP-ribosy 99.9 2.6E-22 5.6E-27 135.5 8.8 158 4-167 18-189 (197)
186 TIGR03598 GTPase_YsxC ribosome 99.9 1.3E-21 2.8E-26 138.9 12.8 146 2-154 17-179 (179)
187 PRK00093 GTP-binding protein D 99.9 3.3E-21 7.2E-26 154.4 16.1 157 3-167 173-346 (435)
188 PRK09518 bifunctional cytidyla 99.9 2.3E-21 5.1E-26 162.8 15.2 158 3-168 450-624 (712)
189 PRK05433 GTP-binding protein L 99.9 3.6E-21 7.8E-26 158.1 15.9 158 3-166 7-185 (600)
190 COG1159 Era GTPase [General fu 99.9 2.2E-21 4.7E-26 142.7 12.9 158 4-166 7-173 (298)
191 PRK09554 feoB ferrous iron tra 99.9 1.1E-20 2.4E-25 158.6 18.6 153 3-164 3-167 (772)
192 COG1160 Predicted GTPases [Gen 99.9 5.7E-21 1.2E-25 147.8 14.2 163 2-170 177-356 (444)
193 cd00880 Era_like Era (E. coli 99.9 5.9E-21 1.3E-25 132.2 13.1 151 8-163 1-162 (163)
194 KOG4423 GTP-binding protein-li 99.9 2.1E-23 4.5E-28 142.3 -0.1 194 1-194 23-223 (229)
195 TIGR00491 aIF-2 translation in 99.9 1.3E-20 2.7E-25 153.9 15.7 157 3-166 4-217 (590)
196 KOG1673 Ras GTPases [General f 99.9 1.9E-20 4E-25 124.3 12.7 163 3-166 20-187 (205)
197 KOG0074 GTP-binding ADP-ribosy 99.9 6.6E-21 1.4E-25 124.5 10.2 153 2-163 16-177 (185)
198 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 3.7E-21 8.1E-26 131.7 9.3 161 3-166 10-170 (216)
199 TIGR00483 EF-1_alpha translati 99.8 1.6E-20 3.6E-25 149.7 12.9 152 2-157 6-199 (426)
200 COG2229 Predicted GTPase [Gene 99.8 1.5E-19 3.3E-24 123.7 15.7 154 2-163 9-176 (187)
201 cd01896 DRG The developmentall 99.8 1.8E-19 3.9E-24 132.6 17.0 151 5-164 2-225 (233)
202 COG0486 ThdF Predicted GTPase 99.8 7.7E-20 1.7E-24 141.9 15.0 152 4-167 218-378 (454)
203 PRK12317 elongation factor 1-a 99.8 2.9E-20 6.3E-25 148.3 13.0 152 3-158 6-198 (425)
204 KOG0072 GTP-binding ADP-ribosy 99.8 2.7E-21 6E-26 126.6 5.6 160 1-167 16-181 (182)
205 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.4E-19 3.1E-24 129.6 14.0 146 3-154 2-172 (195)
206 cd01876 YihA_EngB The YihA (En 99.8 1E-19 2.2E-24 127.4 12.8 150 5-163 1-169 (170)
207 PRK04004 translation initiatio 99.8 2.5E-19 5.4E-24 146.8 16.9 158 2-166 5-219 (586)
208 PF10662 PduV-EutP: Ethanolami 99.8 5.7E-20 1.2E-24 123.1 10.4 135 5-161 3-142 (143)
209 cd04166 CysN_ATPS CysN_ATPS su 99.8 7.5E-20 1.6E-24 132.7 11.9 147 5-156 1-185 (208)
210 PRK10218 GTP-binding protein; 99.8 5.5E-19 1.2E-23 144.8 17.4 160 2-165 4-195 (607)
211 TIGR01394 TypA_BipA GTP-bindin 99.8 1.6E-19 3.4E-24 148.1 14.2 155 5-165 3-191 (594)
212 PRK10512 selenocysteinyl-tRNA- 99.8 2.3E-19 5.1E-24 147.7 15.2 155 5-164 2-165 (614)
213 TIGR03680 eif2g_arch translati 99.8 1.1E-19 2.4E-24 143.8 11.9 160 3-164 4-195 (406)
214 COG0532 InfB Translation initi 99.8 1.4E-18 3E-23 136.8 16.6 156 2-164 4-169 (509)
215 PRK04000 translation initiatio 99.8 2.6E-19 5.6E-24 141.7 12.5 160 2-164 8-200 (411)
216 cd01883 EF1_alpha Eukaryotic e 99.8 2.7E-19 5.9E-24 130.8 10.4 146 5-154 1-194 (219)
217 KOG1145 Mitochondrial translat 99.8 1.8E-18 3.9E-23 135.8 14.6 154 2-163 152-314 (683)
218 cd04167 Snu114p Snu114p subfam 99.8 8.5E-19 1.8E-23 127.7 11.9 113 5-121 2-136 (213)
219 KOG1489 Predicted GTP-binding 99.8 2.1E-18 4.5E-23 127.5 13.1 155 5-163 198-365 (366)
220 COG0370 FeoB Fe2+ transport sy 99.8 3.1E-18 6.7E-23 138.3 15.1 155 3-166 3-165 (653)
221 PRK12736 elongation factor Tu; 99.8 2.4E-18 5.1E-23 135.8 13.7 155 3-163 12-199 (394)
222 KOG1423 Ras-like GTPase ERA [C 99.8 4.6E-18 1E-22 125.1 13.5 160 2-165 71-271 (379)
223 COG0218 Predicted GTPase [Gene 99.8 5.7E-18 1.2E-22 118.5 13.1 154 3-166 24-198 (200)
224 cd04165 GTPBP1_like GTPBP1-lik 99.8 1.1E-17 2.5E-22 122.2 14.5 152 5-162 1-220 (224)
225 COG2262 HflX GTPases [General 99.8 1.3E-17 2.9E-22 127.5 15.0 161 3-169 192-360 (411)
226 cd04168 TetM_like Tet(M)-like 99.8 9.2E-18 2E-22 123.8 13.6 128 5-140 1-146 (237)
227 TIGR00485 EF-Tu translation el 99.8 5.5E-18 1.2E-22 133.9 13.2 144 2-151 11-179 (394)
228 cd04104 p47_IIGP_like p47 (47- 99.8 2.4E-17 5.3E-22 118.6 14.8 159 3-169 1-188 (197)
229 PRK12735 elongation factor Tu; 99.8 8.8E-18 1.9E-22 132.7 13.6 156 2-163 11-201 (396)
230 KOG1707 Predicted Ras related/ 99.8 1.4E-18 3E-23 137.3 8.8 162 3-166 9-176 (625)
231 CHL00071 tufA elongation facto 99.8 9.3E-18 2E-22 133.1 13.3 145 3-153 12-181 (409)
232 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 7.2E-18 1.6E-22 122.8 10.7 159 5-167 1-178 (232)
233 KOG0077 Vesicle coat complex C 99.8 3.6E-18 7.7E-23 114.7 8.3 153 4-163 21-191 (193)
234 COG1163 DRG Predicted GTPase [ 99.8 1.3E-16 2.8E-21 118.5 16.9 153 4-165 64-289 (365)
235 cd01885 EF2 EF2 (for archaea a 99.8 1.2E-17 2.5E-22 121.7 10.9 113 5-121 2-138 (222)
236 cd01850 CDC_Septin CDC/Septin. 99.8 4.9E-17 1.1E-21 122.4 14.5 144 2-149 3-186 (276)
237 cd04169 RF3 RF3 subfamily. Pe 99.7 5.5E-17 1.2E-21 121.5 14.2 113 5-123 4-138 (267)
238 TIGR02034 CysN sulfate adenyly 99.7 2E-17 4.3E-22 131.0 12.1 148 4-156 1-188 (406)
239 cd01886 EF-G Elongation factor 99.7 1.5E-17 3.3E-22 124.7 10.7 113 5-123 1-131 (270)
240 PLN00043 elongation factor 1-a 99.7 5E-17 1.1E-21 129.7 14.3 147 3-155 7-203 (447)
241 cd04170 EF-G_bact Elongation f 99.7 1.5E-17 3.3E-22 125.2 10.7 145 5-157 1-165 (268)
242 COG1084 Predicted GTPase [Gene 99.7 8E-17 1.7E-21 119.9 14.0 158 3-166 168-337 (346)
243 KOG0462 Elongation factor-type 99.7 3.3E-17 7.2E-22 128.8 12.6 159 3-165 60-235 (650)
244 PLN03126 Elongation factor Tu; 99.7 7.7E-17 1.7E-21 129.3 14.5 144 3-152 81-249 (478)
245 PRK05124 cysN sulfate adenylyl 99.7 4.8E-17 1E-21 130.8 13.0 151 2-157 26-217 (474)
246 COG0536 Obg Predicted GTPase [ 99.7 9E-17 2E-21 120.2 13.3 163 5-168 161-336 (369)
247 PRK00049 elongation factor Tu; 99.7 1.2E-16 2.6E-21 126.2 14.7 144 2-151 11-179 (396)
248 PLN03127 Elongation factor Tu; 99.7 1.1E-16 2.5E-21 127.6 14.2 155 2-163 60-250 (447)
249 COG3596 Predicted GTPase [Gene 99.7 4.2E-17 9E-22 118.8 10.4 164 2-170 38-227 (296)
250 PRK00741 prfC peptide chain re 99.7 2E-16 4.3E-21 128.4 15.5 114 3-122 10-145 (526)
251 PTZ00141 elongation factor 1- 99.7 8.3E-17 1.8E-21 128.5 13.0 148 3-155 7-203 (446)
252 PF01926 MMR_HSR1: 50S ribosom 99.7 1.9E-16 4.1E-21 104.5 12.1 106 5-117 1-116 (116)
253 PRK13351 elongation factor G; 99.7 2.6E-16 5.6E-21 132.4 14.3 115 2-122 7-139 (687)
254 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 5.5E-16 1.2E-20 111.5 13.7 159 4-166 1-185 (196)
255 PRK05506 bifunctional sulfate 99.7 1.7E-16 3.8E-21 132.1 12.3 148 3-155 24-211 (632)
256 cd01899 Ygr210 Ygr210 subfamil 99.7 5.2E-16 1.1E-20 118.5 13.1 81 6-86 1-110 (318)
257 PTZ00327 eukaryotic translatio 99.7 2.4E-16 5.1E-21 125.7 11.5 160 3-164 34-232 (460)
258 PF09439 SRPRB: Signal recogni 99.7 1.2E-16 2.6E-21 111.8 8.0 117 4-124 4-128 (181)
259 COG0481 LepA Membrane GTPase L 99.7 1.2E-15 2.7E-20 118.4 14.3 156 5-166 11-187 (603)
260 PRK12739 elongation factor G; 99.7 1.3E-15 2.7E-20 128.1 15.5 115 2-122 7-139 (691)
261 COG5256 TEF1 Translation elong 99.7 3.2E-16 7E-21 120.0 10.8 151 3-156 7-202 (428)
262 KOG1191 Mitochondrial GTPase [ 99.7 4.3E-16 9.3E-21 121.3 10.3 163 3-168 268-453 (531)
263 TIGR00484 EF-G translation elo 99.6 5E-15 1.1E-19 124.5 14.5 115 3-123 10-142 (689)
264 TIGR00503 prfC peptide chain r 99.6 6.5E-15 1.4E-19 119.7 12.7 117 2-122 10-146 (527)
265 KOG0090 Signal recognition par 99.6 1E-14 2.2E-19 102.4 11.5 151 5-163 40-237 (238)
266 PRK09602 translation-associate 99.6 2.5E-14 5.5E-19 112.4 15.0 83 4-86 2-113 (396)
267 PRK12740 elongation factor G; 99.6 1.2E-14 2.5E-19 122.2 13.2 108 9-122 1-126 (668)
268 COG4917 EutP Ethanolamine util 99.6 2.7E-15 5.8E-20 96.5 7.1 136 5-162 3-143 (148)
269 PRK09866 hypothetical protein; 99.6 5.8E-14 1.3E-18 113.8 16.3 108 53-162 231-350 (741)
270 PRK14845 translation initiatio 99.6 7.6E-14 1.6E-18 119.9 15.7 145 14-165 472-673 (1049)
271 PRK00007 elongation factor G; 99.6 4.7E-14 1E-18 118.6 14.2 141 2-150 9-171 (693)
272 COG1217 TypA Predicted membran 99.6 9E-14 2E-18 107.9 12.9 158 5-166 7-196 (603)
273 PF04548 AIG1: AIG1 family; I 99.5 7.9E-14 1.7E-18 101.4 10.3 161 4-168 1-189 (212)
274 TIGR00490 aEF-2 translation el 99.5 4.1E-14 8.8E-19 119.4 9.4 117 2-122 18-152 (720)
275 PTZ00258 GTP-binding protein; 99.5 2.6E-13 5.6E-18 105.8 13.1 85 2-86 20-126 (390)
276 cd01853 Toc34_like Toc34-like 99.5 5E-13 1.1E-17 99.1 13.2 118 2-122 30-163 (249)
277 TIGR00157 ribosome small subun 99.5 8.8E-14 1.9E-18 103.1 8.6 95 63-161 24-119 (245)
278 KOG1144 Translation initiation 99.5 7.7E-14 1.7E-18 113.4 8.8 162 5-170 477-692 (1064)
279 TIGR00991 3a0901s02IAP34 GTP-b 99.5 7.9E-13 1.7E-17 99.6 13.6 119 2-122 37-167 (313)
280 KOG1707 Predicted Ras related/ 99.5 9.5E-13 2.1E-17 104.7 14.4 161 3-168 425-586 (625)
281 COG2895 CysN GTPases - Sulfate 99.5 3E-13 6.4E-18 101.8 10.8 149 2-155 5-193 (431)
282 KOG1490 GTP-binding protein CR 99.5 1.3E-13 2.8E-18 107.9 9.1 163 3-168 168-344 (620)
283 TIGR00101 ureG urease accessor 99.5 1.4E-12 2.9E-17 93.8 13.5 102 53-165 93-196 (199)
284 PRK13768 GTPase; Provisional 99.5 4.6E-13 9.9E-18 99.8 11.2 110 53-165 98-247 (253)
285 PRK09601 GTP-binding protein Y 99.5 2.9E-12 6.2E-17 99.0 14.3 84 3-86 2-107 (364)
286 cd00066 G-alpha G protein alph 99.5 3.2E-12 7E-17 98.2 14.6 118 51-168 160-314 (317)
287 PRK07560 elongation factor EF- 99.5 8E-13 1.7E-17 111.9 11.8 115 3-121 20-152 (731)
288 TIGR00073 hypB hydrogenase acc 99.5 1.9E-12 4.1E-17 93.9 12.1 150 3-163 22-205 (207)
289 KOG0461 Selenocysteine-specifi 99.5 1.7E-12 3.7E-17 97.6 12.0 162 2-168 6-196 (522)
290 PLN00116 translation elongatio 99.5 3.3E-13 7.2E-18 115.6 9.3 116 2-121 18-163 (843)
291 KOG3905 Dynein light intermedi 99.4 7.2E-12 1.6E-16 93.6 14.7 159 5-166 54-291 (473)
292 PTZ00416 elongation factor 2; 99.4 4.4E-13 9.5E-18 114.7 9.1 115 3-121 19-157 (836)
293 PRK09435 membrane ATPase/prote 99.4 2E-12 4.3E-17 99.1 11.8 104 52-166 149-261 (332)
294 TIGR02836 spore_IV_A stage IV 99.4 1.1E-11 2.5E-16 96.0 14.4 152 3-159 17-231 (492)
295 cd01882 BMS1 Bms1. Bms1 is an 99.4 3.5E-12 7.6E-17 93.6 11.0 138 3-152 39-183 (225)
296 KOG3886 GTP-binding protein [S 99.4 3.8E-13 8.1E-18 95.7 5.5 146 3-150 4-164 (295)
297 PF03029 ATP_bind_1: Conserved 99.4 2.4E-13 5.2E-18 100.2 4.6 112 53-164 92-236 (238)
298 smart00010 small_GTPase Small 99.4 6.6E-12 1.4E-16 83.4 11.1 114 4-154 1-115 (124)
299 COG4108 PrfC Peptide chain rel 99.4 4.1E-12 8.9E-17 98.2 10.6 132 5-144 14-167 (528)
300 COG0378 HypB Ni2+-binding GTPa 99.4 6.4E-12 1.4E-16 87.7 9.7 80 77-164 119-200 (202)
301 cd01900 YchF YchF subfamily. 99.4 1.3E-11 2.7E-16 92.5 11.7 81 6-86 1-103 (274)
302 KOG0458 Elongation factor 1 al 99.4 1.3E-11 2.8E-16 98.4 12.0 150 3-156 177-373 (603)
303 PF05049 IIGP: Interferon-indu 99.4 5.5E-12 1.2E-16 97.5 9.7 162 2-170 34-223 (376)
304 PF00350 Dynamin_N: Dynamin fa 99.3 1.9E-11 4.1E-16 85.7 11.0 62 54-118 103-168 (168)
305 PF00735 Septin: Septin; Inte 99.3 2.1E-11 4.5E-16 92.0 11.7 141 2-146 3-182 (281)
306 COG0480 FusA Translation elong 99.3 2.1E-11 4.5E-16 101.5 11.7 117 2-123 9-143 (697)
307 PF05783 DLIC: Dynein light in 99.3 7.1E-11 1.5E-15 94.5 14.3 159 5-166 27-265 (472)
308 COG5257 GCD11 Translation init 99.3 7.2E-12 1.6E-16 93.4 7.7 162 3-166 10-203 (415)
309 KOG1532 GTPase XAB1, interacts 99.3 2.1E-11 4.5E-16 89.2 9.6 116 52-170 116-269 (366)
310 KOG1486 GTP-binding protein DR 99.3 2.7E-10 5.9E-15 82.5 15.2 153 4-165 63-288 (364)
311 TIGR00750 lao LAO/AO transport 99.3 3.5E-11 7.6E-16 92.0 11.2 103 52-165 127-238 (300)
312 TIGR00993 3a0901s04IAP86 chlor 99.3 8.3E-11 1.8E-15 96.1 13.4 119 2-122 117-250 (763)
313 COG0012 Predicted GTPase, prob 99.3 1.9E-10 4.2E-15 88.0 14.4 84 3-86 2-108 (372)
314 COG3276 SelB Selenocysteine-sp 99.3 8.4E-11 1.8E-15 91.3 11.3 155 5-165 2-162 (447)
315 cd01855 YqeH YqeH. YqeH is an 99.3 4.5E-11 9.7E-16 85.6 8.9 111 65-194 24-142 (190)
316 KOG0082 G-protein alpha subuni 99.2 4.8E-10 1E-14 85.8 14.5 129 40-170 185-349 (354)
317 smart00053 DYNc Dynamin, GTPas 99.2 2E-10 4.2E-15 84.5 10.9 69 52-123 125-207 (240)
318 PRK10463 hydrogenase nickel in 99.2 7.6E-11 1.7E-15 88.4 8.8 55 109-163 231-287 (290)
319 KOG0410 Predicted GTP binding 99.2 1.8E-11 3.8E-16 91.5 5.0 155 4-169 179-345 (410)
320 cd01859 MJ1464 MJ1464. This f 99.1 1.4E-10 3.1E-15 80.4 7.0 93 67-165 4-96 (156)
321 COG0050 TufB GTPases - transla 99.1 6.6E-10 1.4E-14 82.2 9.8 141 3-149 12-177 (394)
322 PRK12289 GTPase RsgA; Reviewed 99.1 2.8E-10 6.2E-15 88.3 7.9 90 68-162 82-172 (352)
323 COG1703 ArgK Putative periplas 99.1 2.6E-09 5.7E-14 79.4 12.1 106 52-169 144-258 (323)
324 KOG0468 U5 snRNP-specific prot 99.1 9.3E-10 2E-14 89.3 9.2 117 1-121 126-262 (971)
325 PRK12288 GTPase RsgA; Reviewed 99.1 1E-09 2.2E-14 85.1 9.0 86 74-162 119-205 (347)
326 PF03308 ArgK: ArgK protein; 99.1 2.4E-10 5.2E-15 83.7 4.9 103 52-166 122-231 (266)
327 COG5019 CDC3 Septin family pro 99.0 5.9E-09 1.3E-13 79.5 12.4 139 2-144 22-200 (373)
328 smart00275 G_alpha G protein a 99.0 1.3E-08 2.7E-13 79.2 14.3 127 40-168 174-337 (342)
329 KOG3887 Predicted small GTPase 99.0 2.7E-09 5.8E-14 77.0 9.2 163 4-169 28-206 (347)
330 cd01849 YlqF_related_GTPase Yl 99.0 1.4E-09 3.1E-14 75.2 7.6 114 77-194 1-115 (155)
331 KOG1487 GTP-binding protein DR 99.0 2.8E-09 6E-14 77.6 8.8 151 5-165 61-281 (358)
332 TIGR03597 GTPase_YqeH ribosome 99.0 1.8E-09 3.9E-14 84.6 8.0 113 62-194 50-169 (360)
333 KOG2655 Septin family protein 99.0 1.7E-08 3.7E-13 77.5 13.0 157 3-166 21-215 (366)
334 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.6E-09 3.5E-14 75.1 6.8 113 72-194 5-117 (157)
335 KOG0705 GTPase-activating prot 99.0 2.3E-09 5.1E-14 85.3 8.3 158 3-167 30-191 (749)
336 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3.3E-09 7.2E-14 80.6 8.7 88 70-162 73-161 (287)
337 PRK00098 GTPase RsgA; Reviewed 98.9 4.3E-09 9.4E-14 80.4 8.3 86 72-161 77-163 (298)
338 KOG1547 Septin CDC10 and relat 98.9 9.2E-09 2E-13 74.2 9.1 145 2-151 45-229 (336)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.7E-09 7.9E-14 72.0 6.3 54 5-62 85-138 (141)
340 KOG1954 Endocytosis/signaling 98.9 6.3E-09 1.4E-13 79.4 7.8 118 3-123 58-226 (532)
341 cd04178 Nucleostemin_like Nucl 98.9 4.8E-09 1E-13 73.7 6.7 55 3-61 117-171 (172)
342 KOG2486 Predicted GTPase [Gene 98.9 2.7E-09 5.8E-14 78.4 5.6 152 2-162 135-313 (320)
343 cd01856 YlqF YlqF. Proteins o 98.9 3E-09 6.5E-14 74.9 5.7 120 67-194 11-130 (171)
344 cd01858 NGP_1 NGP-1. Autoanti 98.9 9.7E-09 2.1E-13 71.2 6.9 55 3-61 102-156 (157)
345 COG5258 GTPBP1 GTPase [General 98.9 3.1E-08 6.8E-13 76.0 9.9 154 3-160 117-334 (527)
346 KOG0448 Mitofusin 1 GTPase, in 98.8 7.4E-08 1.6E-12 78.7 12.4 143 2-148 108-309 (749)
347 PF09547 Spore_IV_A: Stage IV 98.8 2.3E-07 5E-12 72.5 14.4 151 4-159 18-231 (492)
348 cd01856 YlqF YlqF. Proteins o 98.8 2.1E-08 4.5E-13 70.6 6.8 56 3-62 115-170 (171)
349 KOG1491 Predicted GTP-binding 98.8 1.6E-08 3.4E-13 76.4 6.4 85 2-86 19-125 (391)
350 TIGR03348 VI_IcmF type VI secr 98.8 7.1E-08 1.5E-12 85.9 10.9 112 6-122 114-257 (1169)
351 TIGR00092 GTP-binding protein 98.7 9.2E-08 2E-12 74.3 9.7 84 3-86 2-108 (368)
352 PRK09563 rbgA GTPase YlqF; Rev 98.7 4.5E-08 9.8E-13 74.5 7.8 57 3-63 121-177 (287)
353 TIGR03596 GTPase_YlqF ribosome 98.7 4.1E-08 9E-13 74.3 7.3 56 3-62 118-173 (276)
354 cd01859 MJ1464 MJ1464. This f 98.7 4.9E-08 1.1E-12 67.6 7.1 55 3-61 101-155 (156)
355 TIGR03596 GTPase_YlqF ribosome 98.7 6.7E-08 1.5E-12 73.2 8.4 119 68-194 14-133 (276)
356 KOG0460 Mitochondrial translat 98.7 2.5E-07 5.3E-12 70.1 10.7 166 3-173 54-249 (449)
357 KOG0467 Translation elongation 98.7 3.1E-08 6.7E-13 81.6 6.4 112 3-120 9-136 (887)
358 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 3.9E-08 8.5E-13 67.0 5.8 76 71-152 7-84 (141)
359 PF03193 DUF258: Protein of un 98.7 1.9E-08 4.1E-13 69.3 4.1 59 5-66 37-101 (161)
360 COG1161 Predicted GTPases [Gen 98.7 4.3E-08 9.3E-13 75.6 6.4 57 3-63 132-188 (322)
361 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.2E-07 2.5E-12 72.2 8.1 119 68-194 17-136 (287)
362 PRK13796 GTPase YqeH; Provisio 98.7 1.7E-07 3.6E-12 73.7 9.0 111 64-194 58-175 (365)
363 KOG0464 Elongation factor G [T 98.6 1.4E-08 3.1E-13 78.6 1.9 129 5-141 39-185 (753)
364 KOG1143 Predicted translation 98.6 4.5E-07 9.8E-12 69.6 9.7 154 3-160 167-383 (591)
365 cd01849 YlqF_related_GTPase Yl 98.6 1.7E-07 3.7E-12 64.9 6.5 54 3-61 100-154 (155)
366 PRK12288 GTPase RsgA; Reviewed 98.6 1.4E-07 3E-12 73.4 6.6 58 6-66 208-271 (347)
367 cd01855 YqeH YqeH. YqeH is an 98.6 7.4E-08 1.6E-12 68.9 4.3 24 4-27 128-151 (190)
368 cd01851 GBP Guanylate-binding 98.5 2.1E-06 4.6E-11 63.0 11.6 85 3-88 7-104 (224)
369 COG5192 BMS1 GTP-binding prote 98.5 8E-07 1.7E-11 71.7 9.2 134 3-149 69-210 (1077)
370 KOG0466 Translation initiation 98.5 3.2E-08 7E-13 73.8 1.3 115 53-169 126-245 (466)
371 COG1618 Predicted nucleotide k 98.5 7.3E-06 1.6E-10 55.9 12.4 147 2-165 4-176 (179)
372 TIGR00157 ribosome small subun 98.5 2.9E-07 6.2E-12 68.5 6.1 57 5-65 122-184 (245)
373 PRK12289 GTPase RsgA; Reviewed 98.5 4E-07 8.7E-12 70.9 6.2 57 6-65 175-237 (352)
374 COG1162 Predicted GTPases [Gen 98.4 4.9E-07 1.1E-11 68.0 5.6 58 6-66 167-230 (301)
375 KOG0447 Dynamin-like GTP bindi 98.4 6.9E-06 1.5E-10 66.2 12.2 134 1-137 306-508 (980)
376 PRK10416 signal recognition pa 98.4 2.1E-06 4.5E-11 66.1 9.1 95 52-158 197-303 (318)
377 PRK01889 GTPase RsgA; Reviewed 98.4 1.5E-06 3.2E-11 68.2 8.4 83 73-161 110-193 (356)
378 KOG0465 Mitochondrial elongati 98.4 7.5E-07 1.6E-11 72.2 6.6 114 5-124 41-172 (721)
379 KOG0463 GTP-binding protein GP 98.4 2.3E-06 4.9E-11 66.0 8.8 153 3-159 133-352 (641)
380 KOG0459 Polypeptide release fa 98.4 8.4E-07 1.8E-11 68.7 6.2 153 3-158 79-279 (501)
381 TIGR00064 ftsY signal recognit 98.4 1.9E-06 4.1E-11 65.0 7.7 95 52-158 155-261 (272)
382 PRK13796 GTPase YqeH; Provisio 98.4 6.7E-07 1.5E-11 70.3 5.5 56 5-63 162-221 (365)
383 cd03112 CobW_like The function 98.4 3E-06 6.6E-11 58.8 8.1 21 6-26 3-23 (158)
384 TIGR03597 GTPase_YqeH ribosome 98.3 1.1E-06 2.4E-11 69.0 6.2 57 5-64 156-216 (360)
385 KOG1424 Predicted GTP-binding 98.3 6.1E-07 1.3E-11 71.3 4.6 57 3-63 314-370 (562)
386 COG3523 IcmF Type VI protein s 98.3 2.7E-06 5.9E-11 74.7 8.4 111 7-122 129-270 (1188)
387 PRK13695 putative NTPase; Prov 98.3 2.2E-05 4.7E-10 55.4 11.1 77 72-164 93-172 (174)
388 PRK14974 cell division protein 98.3 1.6E-06 3.4E-11 67.1 5.6 96 52-159 223-324 (336)
389 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.3E-06 5E-11 65.2 6.0 58 5-65 163-226 (287)
390 PRK00098 GTPase RsgA; Reviewed 98.3 2.6E-06 5.6E-11 65.2 6.2 58 5-65 166-229 (298)
391 KOG3859 Septins (P-loop GTPase 98.2 9.7E-06 2.1E-10 60.1 8.2 60 2-61 41-104 (406)
392 COG1162 Predicted GTPases [Gen 98.2 2.5E-05 5.4E-10 59.0 9.7 92 68-162 72-164 (301)
393 KOG0469 Elongation factor 2 [T 98.2 5.3E-06 1.1E-10 66.2 6.2 128 5-136 21-179 (842)
394 TIGR01425 SRP54_euk signal rec 98.1 3.5E-05 7.5E-10 61.5 10.6 83 52-144 183-271 (429)
395 PRK14722 flhF flagellar biosyn 98.1 3.8E-05 8.3E-10 60.3 9.5 138 5-146 139-315 (374)
396 KOG1534 Putative transcription 98.1 4.4E-06 9.5E-11 59.5 3.8 71 53-123 99-179 (273)
397 COG3640 CooC CO dehydrogenase 98.1 2.7E-05 6E-10 56.4 7.9 62 54-121 136-198 (255)
398 PF00503 G-alpha: G-protein al 98.1 1.5E-05 3.1E-10 63.5 6.9 123 39-163 224-388 (389)
399 KOG4273 Uncharacterized conser 98.0 0.00014 3E-09 53.3 11.2 157 3-165 4-222 (418)
400 KOG2484 GTPase [General functi 98.0 4.1E-06 8.8E-11 64.8 3.3 56 3-62 252-307 (435)
401 cd03115 SRP The signal recogni 98.0 3.2E-05 7E-10 54.4 7.7 83 52-144 83-171 (173)
402 PF03266 NTPase_1: NTPase; In 98.0 2.5E-05 5.5E-10 54.7 6.0 135 5-153 1-163 (168)
403 PF02492 cobW: CobW/HypB/UreG, 98.0 1.7E-05 3.7E-10 56.2 5.1 81 52-139 85-171 (178)
404 cd03114 ArgK-like The function 97.9 8.1E-05 1.7E-09 51.1 8.2 57 52-119 92-148 (148)
405 PRK12727 flagellar biosynthesi 97.9 0.00015 3.3E-09 59.1 10.6 90 52-153 429-523 (559)
406 PRK11537 putative GTP-binding 97.9 0.00013 2.7E-09 56.4 9.7 22 5-26 6-27 (318)
407 COG0523 Putative GTPases (G3E 97.9 0.00033 7.1E-09 54.1 11.8 74 75-157 116-193 (323)
408 cd02038 FleN-like FleN is a me 97.9 9.3E-05 2E-09 50.2 7.6 107 7-121 4-110 (139)
409 cd02042 ParA ParA and ParB of 97.9 7.6E-05 1.6E-09 47.8 6.7 82 6-99 2-84 (104)
410 KOG0085 G protein subunit Galp 97.9 3.4E-05 7.4E-10 55.8 5.4 117 52-168 199-352 (359)
411 KOG2485 Conserved ATP/GTP bind 97.8 3.4E-05 7.5E-10 58.1 5.3 58 2-62 142-206 (335)
412 PF00448 SRP54: SRP54-type pro 97.8 0.0002 4.3E-09 51.5 9.1 84 52-146 84-174 (196)
413 PRK14721 flhF flagellar biosyn 97.8 8.8E-05 1.9E-09 59.2 7.8 89 52-153 270-365 (420)
414 PRK00771 signal recognition pa 97.8 3.4E-05 7.3E-10 61.9 5.2 86 52-147 176-267 (437)
415 cd04178 Nucleostemin_like Nucl 97.8 4.2E-05 9.1E-10 53.8 4.9 44 77-122 1-44 (172)
416 PF06858 NOG1: Nucleolar GTP-b 97.8 0.00013 2.8E-09 40.9 5.7 45 74-119 12-58 (58)
417 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00023 4.9E-09 44.6 7.6 69 6-88 2-71 (99)
418 COG0563 Adk Adenylate kinase a 97.7 2.5E-05 5.3E-10 55.2 3.0 23 4-26 1-23 (178)
419 cd03111 CpaE_like This protein 97.7 0.00021 4.6E-09 46.1 7.0 99 10-117 7-106 (106)
420 PF13207 AAA_17: AAA domain; P 97.7 3.3E-05 7.1E-10 50.9 3.2 21 5-25 1-21 (121)
421 PRK05703 flhF flagellar biosyn 97.7 0.00046 9.9E-09 55.5 9.7 90 52-153 300-396 (424)
422 TIGR00959 ffh signal recogniti 97.7 0.00039 8.5E-09 55.8 9.1 86 52-147 183-274 (428)
423 KOG1533 Predicted GTPase [Gene 97.7 4.7E-05 1E-09 55.2 3.5 68 52-121 97-176 (290)
424 PRK10867 signal recognition pa 97.7 0.00026 5.6E-09 56.8 8.0 86 52-147 184-275 (433)
425 PRK08118 topology modulation p 97.7 4.2E-05 9.1E-10 53.6 3.2 23 4-26 2-24 (167)
426 PF11111 CENP-M: Centromere pr 97.6 0.006 1.3E-07 42.4 13.4 139 3-165 15-153 (176)
427 PRK07261 topology modulation p 97.6 4.4E-05 9.6E-10 53.7 3.0 22 4-25 1-22 (171)
428 PRK12724 flagellar biosynthesi 97.6 0.00038 8.3E-09 55.4 8.5 86 52-147 300-394 (432)
429 PF13671 AAA_33: AAA domain; P 97.6 5.6E-05 1.2E-09 51.3 3.0 20 6-25 2-21 (143)
430 COG1419 FlhF Flagellar GTP-bin 97.6 0.00081 1.7E-08 53.0 9.6 128 5-146 205-372 (407)
431 COG0194 Gmk Guanylate kinase [ 97.6 4.5E-05 9.7E-10 53.5 2.3 23 5-27 6-28 (191)
432 PRK06995 flhF flagellar biosyn 97.6 0.00065 1.4E-08 55.2 9.1 90 52-153 335-430 (484)
433 cd00009 AAA The AAA+ (ATPases 97.6 0.0005 1.1E-08 46.3 7.4 24 4-27 20-43 (151)
434 PRK12726 flagellar biosynthesi 97.5 0.00038 8.2E-09 54.7 7.3 91 52-154 286-382 (407)
435 PF13555 AAA_29: P-loop contai 97.5 0.00011 2.5E-09 42.1 3.0 19 6-24 26-44 (62)
436 PF13521 AAA_28: AAA domain; P 97.5 6.6E-05 1.4E-09 52.3 2.4 22 5-26 1-22 (163)
437 cd02036 MinD Bacterial cell di 97.5 0.0062 1.3E-07 42.8 12.0 84 53-143 64-147 (179)
438 PRK14737 gmk guanylate kinase; 97.4 0.00012 2.6E-09 52.2 3.1 23 4-26 5-27 (186)
439 cd02019 NK Nucleoside/nucleoti 97.4 0.00015 3.2E-09 42.9 3.0 21 6-26 2-22 (69)
440 cd03110 Fer4_NifH_child This p 97.4 0.0011 2.5E-08 46.8 8.0 84 51-143 92-175 (179)
441 PRK06217 hypothetical protein; 97.4 0.00014 3.1E-09 51.6 3.3 23 4-26 2-24 (183)
442 PRK03839 putative kinase; Prov 97.4 0.00016 3.4E-09 51.2 3.0 23 4-26 1-23 (180)
443 COG1126 GlnQ ABC-type polar am 97.4 0.00024 5.3E-09 51.1 3.8 26 144-169 163-188 (240)
444 PF03205 MobB: Molybdopterin g 97.4 0.00018 3.8E-09 48.9 3.1 22 5-26 2-23 (140)
445 COG1116 TauB ABC-type nitrate/ 97.4 0.00021 4.6E-09 52.4 3.6 21 6-26 32-52 (248)
446 PRK12723 flagellar biosynthesi 97.4 0.0034 7.3E-08 49.9 10.5 90 52-153 255-351 (388)
447 cd00071 GMPK Guanosine monopho 97.3 0.00024 5.3E-09 48.0 3.5 21 6-26 2-22 (137)
448 PF13238 AAA_18: AAA domain; P 97.3 0.0002 4.4E-09 47.4 3.0 21 6-26 1-21 (129)
449 PRK14723 flhF flagellar biosyn 97.3 0.0019 4.1E-08 55.2 9.1 92 52-153 264-362 (767)
450 PF00005 ABC_tran: ABC transpo 97.3 0.00023 5.1E-09 47.9 3.2 22 5-26 13-34 (137)
451 PF00004 AAA: ATPase family as 97.3 0.00024 5.2E-09 47.3 2.9 21 6-26 1-21 (132)
452 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00098 2.1E-08 44.7 5.6 22 5-26 24-45 (133)
453 COG1161 Predicted GTPases [Gen 97.3 0.00053 1.1E-08 53.2 5.0 128 58-194 16-147 (322)
454 COG1136 SalX ABC-type antimicr 97.3 0.00033 7.2E-09 51.1 3.6 21 6-26 34-54 (226)
455 PRK14530 adenylate kinase; Pro 97.3 0.00027 5.8E-09 51.6 3.2 23 3-25 3-25 (215)
456 PRK01889 GTPase RsgA; Reviewed 97.2 0.00034 7.4E-09 55.0 3.9 22 5-26 197-218 (356)
457 PRK10078 ribose 1,5-bisphospho 97.2 0.00026 5.6E-09 50.5 3.0 22 5-26 4-25 (186)
458 PF04665 Pox_A32: Poxvirus A32 97.2 0.00029 6.2E-09 52.0 3.2 24 2-25 12-35 (241)
459 PRK14532 adenylate kinase; Pro 97.2 0.00028 6.1E-09 50.3 3.0 22 4-25 1-22 (188)
460 TIGR02322 phosphon_PhnN phosph 97.2 0.00028 6E-09 49.9 2.9 22 5-26 3-24 (179)
461 PRK14531 adenylate kinase; Pro 97.2 0.00034 7.4E-09 49.7 3.3 23 3-25 2-24 (183)
462 PRK14738 gmk guanylate kinase; 97.2 0.00038 8.3E-09 50.5 3.5 24 3-26 13-36 (206)
463 PTZ00088 adenylate kinase 1; P 97.2 0.00032 7E-09 51.6 3.1 23 3-25 6-28 (229)
464 smart00382 AAA ATPases associa 97.2 0.00037 8.1E-09 46.5 3.2 25 4-28 3-27 (148)
465 PRK06731 flhF flagellar biosyn 97.2 0.0043 9.3E-08 46.8 9.0 85 52-146 155-245 (270)
466 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00037 8.1E-09 44.8 2.8 20 5-24 17-36 (107)
467 KOG2423 Nucleolar GTPase [Gene 97.2 0.00013 2.8E-09 56.9 0.8 81 3-90 307-389 (572)
468 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00034 7.5E-09 49.7 2.9 22 4-25 4-25 (188)
469 PRK13949 shikimate kinase; Pro 97.2 0.00041 8.9E-09 48.7 3.2 21 5-25 3-23 (169)
470 TIGR03263 guanyl_kin guanylate 97.2 0.00037 8.1E-09 49.2 3.0 22 5-26 3-24 (180)
471 PF03215 Rad17: Rad17 cell cyc 97.1 0.0044 9.5E-08 51.1 9.4 20 6-25 48-67 (519)
472 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0035 7.5E-08 44.3 7.7 22 5-26 27-48 (177)
473 PRK02496 adk adenylate kinase; 97.1 0.00047 1E-08 49.0 3.3 22 4-25 2-23 (184)
474 PRK00625 shikimate kinase; Pro 97.1 0.00042 9E-09 48.8 3.0 22 4-25 1-22 (173)
475 KOG3347 Predicted nucleotide k 97.1 0.00035 7.6E-09 47.3 2.3 24 2-25 6-29 (176)
476 COG1117 PstB ABC-type phosphat 97.1 0.0004 8.8E-09 49.9 2.7 20 6-25 36-55 (253)
477 PF07728 AAA_5: AAA domain (dy 97.1 0.00048 1E-08 46.5 2.9 21 5-25 1-21 (139)
478 PRK08233 hypothetical protein; 97.1 0.00059 1.3E-08 48.2 3.4 23 3-25 3-25 (182)
479 cd01428 ADK Adenylate kinase ( 97.1 0.00043 9.3E-09 49.5 2.7 22 5-26 1-22 (194)
480 COG1120 FepC ABC-type cobalami 97.1 0.00047 1E-08 51.3 2.9 20 6-25 31-50 (258)
481 cd02023 UMPK Uridine monophosp 97.1 0.00046 1E-08 49.6 2.8 21 6-26 2-22 (198)
482 cd03238 ABC_UvrA The excision 97.1 0.00054 1.2E-08 48.4 3.1 20 5-24 23-42 (176)
483 COG3638 ABC-type phosphate/pho 97.1 0.00051 1.1E-08 50.1 2.9 21 5-25 32-52 (258)
484 PRK06547 hypothetical protein; 97.1 0.0007 1.5E-08 47.6 3.6 25 2-26 14-38 (172)
485 TIGR00235 udk uridine kinase. 97.1 0.00065 1.4E-08 49.3 3.5 23 3-25 6-28 (207)
486 PRK05480 uridine/cytidine kina 97.1 0.00064 1.4E-08 49.4 3.5 24 2-25 5-28 (209)
487 PRK10751 molybdopterin-guanine 97.1 0.00063 1.4E-08 47.7 3.3 23 4-26 7-29 (173)
488 cd01130 VirB11-like_ATPase Typ 97.0 0.00058 1.3E-08 48.7 3.1 22 5-26 27-48 (186)
489 TIGR01351 adk adenylate kinase 97.0 0.00048 1E-08 50.1 2.7 21 5-25 1-21 (210)
490 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00054 1.2E-08 48.6 2.9 20 6-25 2-21 (183)
491 COG1936 Predicted nucleotide k 97.0 0.00055 1.2E-08 47.5 2.7 21 4-24 1-21 (180)
492 PRK00279 adk adenylate kinase; 97.0 0.0006 1.3E-08 49.7 3.1 22 4-25 1-22 (215)
493 cd02025 PanK Pantothenate kina 97.0 0.00052 1.1E-08 50.3 2.7 20 6-25 2-21 (220)
494 COG3839 MalK ABC-type sugar tr 97.0 0.00076 1.6E-08 52.2 3.6 21 6-26 32-52 (338)
495 PRK08099 bifunctional DNA-bind 97.0 0.00064 1.4E-08 54.2 3.3 25 2-26 218-242 (399)
496 COG3840 ThiQ ABC-type thiamine 97.0 0.00088 1.9E-08 47.1 3.5 22 5-26 27-48 (231)
497 PRK14529 adenylate kinase; Pro 97.0 0.00072 1.6E-08 49.5 3.0 22 4-25 1-22 (223)
498 PF02367 UPF0079: Uncharacteri 97.0 0.0022 4.8E-08 42.4 5.0 21 5-25 17-37 (123)
499 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00077 1.7E-08 49.2 3.2 22 5-26 32-53 (218)
500 PRK00300 gmk guanylate kinase; 97.0 0.00069 1.5E-08 48.9 2.9 22 5-26 7-28 (205)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-45 Score=253.14 Aligned_cols=197 Identities=72% Similarity=1.165 Sum_probs=181.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
+|.+||+|+|.+|||||+|+.||....+.+.+..|+++++..+++.+++..+++++|||+|+++|..+...|+++++++|
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~ 159 (198)
+|||+++.+||..+..|+.++.++...++|.++|+||+|+.+.+.++.++++.++..++++ ++++||+++.|++++|..
T Consensus 87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHhhhcCcCCCCCCCCccccCCCCC-CCCCCccC
Q 043946 160 MTADIKNRMASQPAMNNARPPTVQIKGQPV-NQKASCCS 197 (198)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~cc~ 197 (198)
|...+.++.......+.....+.++.+.+. ...++||+
T Consensus 167 la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 167 LAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence 999999988877766654555555666444 34445775
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-42 Score=236.82 Aligned_cols=196 Identities=42% Similarity=0.735 Sum_probs=178.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+|++++|..+||||||+-|+..+++.+...+|++.-+....+.++...+++.||||+|+++|..+-++|+++++++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 46899999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||+++.+||..+..|+..+.+...+++-+.+|+||+|+.+.+++..++++.++...+..|+++||+++.|++++|..|.
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia 163 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA 163 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence 99999999999999999999998888888889999999999899999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCcCCCCCCCCccccCCC-CCCCCCCccC
Q 043946 162 ADIKNRMASQPAMNNARPPTVQIKGQ-PVNQKASCCS 197 (198)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~cc~ 197 (198)
+.+.....+.......++.+..+... ++...++|||
T Consensus 164 ~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 164 EKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence 99987666655443444455555544 6777888997
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-41 Score=232.68 Aligned_cols=171 Identities=63% Similarity=1.089 Sum_probs=165.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
|+.+||+++|.++||||+++.+|..+.+...+..+.++++..+++..++..+++++|||+|++.+..+...|++.+++++
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||+++..||.++..|+..+.++...++|.++|+||+|+...+.++.+..++++..+|+.|+|+||++|.||+|+|..|
T Consensus 90 LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L 169 (207)
T KOG0078|consen 90 LVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL 169 (207)
T ss_pred EEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 043946 161 TADIKNRMASQ 171 (198)
Q Consensus 161 ~~~~~~~~~~~ 171 (198)
.+.+.++....
T Consensus 170 a~~i~~k~~~~ 180 (207)
T KOG0078|consen 170 ARDILQKLEDA 180 (207)
T ss_pred HHHHHhhcchh
Confidence 99999866654
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-40 Score=226.62 Aligned_cols=195 Identities=39% Similarity=0.674 Sum_probs=168.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+|++++|..+|||||||.|+....+...|.+|++.++...++.+.+..+++++|||+|+++|..+...|++++.++|+|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV 101 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV 101 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASE-NVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||+++.+||.+...|++.+...... +.-+++|+||.||.+.+++..++.+..++++++.|+++||+.|.||.++|..|.
T Consensus 102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIa 181 (221)
T KOG0094|consen 102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIA 181 (221)
T ss_pred EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHH
Confidence 9999999999999999999888776 477888999999999999999999999999999999999999999999999977
Q ss_pred HHHHHhhhcCcCCCCCCCCccccCCCCCCCC----CCccC
Q 043946 162 ADIKNRMASQPAMNNARPPTVQIKGQPVNQK----ASCCS 197 (198)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~cc~ 197 (198)
..+.................+.+++.++..+ .+|||
T Consensus 182 a~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~~~~~~C 221 (221)
T KOG0094|consen 182 AALPGMEVLEILSKQESMVDINLKGSPNEQQASKPGLCSC 221 (221)
T ss_pred HhccCccccccccccccceeEEccCCCCcccccCCCCCCC
Confidence 7776654422222222233344443333333 23888
No 5
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.8e-40 Score=219.20 Aligned_cols=169 Identities=50% Similarity=0.824 Sum_probs=158.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++++||+++|.+|||||||+.+|....+.+....++++++..+.+.+++..+++.||||+|+++|..+...|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
+|||++.+++|..+..|+.++..+.. +++-.++|+||+|..+.+.++.++..++++++++.|+++||++.+|++..|+.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence 99999999999999999999988865 45667889999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 043946 160 MTADIKNRMA 169 (198)
Q Consensus 160 l~~~~~~~~~ 169 (198)
|...+.+-..
T Consensus 169 lveKIi~tp~ 178 (209)
T KOG0080|consen 169 LVEKIIETPS 178 (209)
T ss_pred HHHHHhcCcc
Confidence 9999987444
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-39 Score=219.60 Aligned_cols=170 Identities=52% Similarity=0.881 Sum_probs=162.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
.+.+|++++|..|||||+|+.++....+.+.+..|++.++..+.+++++..+++++|||+|++.+.+....|++.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++++|.++..|+..++.+...++.+++++||+|+...+.++.++.+.++++++..++++||+++.|++|+|...
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt 163 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT 163 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
...+......
T Consensus 164 a~~Iy~~~q~ 173 (216)
T KOG0098|consen 164 AKEIYRKIQD 173 (216)
T ss_pred HHHHHHHHHh
Confidence 8888766554
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.3e-38 Score=229.13 Aligned_cols=165 Identities=50% Similarity=0.919 Sum_probs=151.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899888888888899998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|++++++|..+..|+..+......+.|+++|+||+|+.+.+.+..++..++++.+ ++.|+++||++|.||+++|++|.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887776667999999999999877778888888888875 789999999999999999999999
Q ss_pred HHHHhh
Q 043946 163 DIKNRM 168 (198)
Q Consensus 163 ~~~~~~ 168 (198)
.+.+..
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 8
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4.9e-38 Score=229.18 Aligned_cols=198 Identities=46% Similarity=0.792 Sum_probs=166.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 36799999999999999999999998887778888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l 169 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI 169 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888766689999999999998777777888888988889999999999999999999999
Q ss_pred HHHHHHhhhcCcCCCCC---------CCCccccCCCCCCCCCCccCC
Q 043946 161 TADIKNRMASQPAMNNA---------RPPTVQIKGQPVNQKASCCST 198 (198)
Q Consensus 161 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~cc~~ 198 (198)
.+.+.+........... .-..+.+.++...++++||+|
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 216 (216)
T PLN03110 170 LLEIYHIISKKALAAQEAAANSGLPGQGTTINVADTSGNNKRGCCST 216 (216)
T ss_pred HHHHHHHhhccccccccCcccccCcCcCCcccccCccCCCCCCCcCC
Confidence 99987744432211110 111112233456677889865
No 9
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=5.8e-39 Score=217.57 Aligned_cols=193 Identities=36% Similarity=0.651 Sum_probs=169.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|+|||||.+++++.++...+..+++.++-.+.+.+++..+.++||||+|+++|..+...+++.+|.+++|
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlv 88 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 88 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC--CCcCCHHHHHHHHHHhC-CcEEEEeccCCCCHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTD--KKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQ 155 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~ 155 (198)
||++++.+|+.+..|..++..... ...|+||++||+|+.+ .+.++...+..++...+ ++|+++||+...||++
T Consensus 89 ydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 89 YDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDE 168 (210)
T ss_pred eecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHH
Confidence 999999999999999999987765 4589999999999975 37889999999999886 8999999999999999
Q ss_pred HHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCCcc
Q 043946 156 AFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 196 (198)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 196 (198)
+|+.+.+.++............-...+.......+.++ ||
T Consensus 169 AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~-~c 208 (210)
T KOG0394|consen 169 AFEEIARRALANEDREIAELADYSDQIVLSTKANNQSS-GC 208 (210)
T ss_pred HHHHHHHHHHhccchhhhhhhhcCcccccccccccCCC-CC
Confidence 99999999987665433333344455555555555555 55
No 10
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.3e-38 Score=226.53 Aligned_cols=193 Identities=37% Similarity=0.683 Sum_probs=159.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
+||+++|++|||||||+++|..+.+...+.++.+.++....+.++ +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888888877777777777 7778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 157 (198)
||+++++++..+..|+..+.... ..++|+++|+||+|+...+.+..+++.++++..+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999998876532 2568999999999997656678889999999998 689999999999999999
Q ss_pred HHHHHHHHHhhhcCcCCCCC-CCCccccCC-CCCCCCCCcc
Q 043946 158 MAMTADIKNRMASQPAMNNA-RPPTVQIKG-QPVNQKASCC 196 (198)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~cc 196 (198)
++|.+.+.+.......+.++ +.+.+...+ .+.+++++||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 99999987755443333322 223333333 3344445687
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-38 Score=218.82 Aligned_cols=170 Identities=54% Similarity=0.847 Sum_probs=163.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
||.+||+++|.++||||-|+.||....+..+..+|+++++....+.+++..++.+||||+|+++|+.+...|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++...+|+.+..|+.+++.+...++++++|+||+||...+.++.++.+.++++.+..++++||.++.|++++|+.+
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~ 171 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV 171 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
+..+.+...+
T Consensus 172 l~~I~~~vs~ 181 (222)
T KOG0087|consen 172 LTEIYKIVSK 181 (222)
T ss_pred HHHHHHHHHH
Confidence 9888776554
No 12
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.5e-37 Score=224.12 Aligned_cols=195 Identities=57% Similarity=0.898 Sum_probs=168.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..++..+|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 36799999999999999999999998888788888887887788888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||+++++++..+..|+..+.... ...|+++|+||+|+.+...+..++...++...+.+++++|+++|.|++++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence 9999999999999999999887654 468999999999998766667788888888889999999999999999999999
Q ss_pred HHHHHHhhhcCcCCCCCCCCccccCCCCC-CCCCCcc
Q 043946 161 TADIKNRMASQPAMNNARPPTVQIKGQPV-NQKASCC 196 (198)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~cc 196 (198)
.+.+......................+.. ++++.||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 99998877776666666655555555555 6666677
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.1e-37 Score=222.26 Aligned_cols=168 Identities=44% Similarity=0.738 Sum_probs=153.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+++|..|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999998887777788887787788888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.+|..+..|+..+.... .+.|++||+||.|+.+.+.+..++++.+++..+++++++||++|.|++++|++|
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l 162 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTEL 162 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999999997765 479999999999998777788999999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 043946 161 TADIKNRMA 169 (198)
Q Consensus 161 ~~~~~~~~~ 169 (198)
.+.+..+..
T Consensus 163 ~~~i~~~~~ 171 (189)
T cd04121 163 ARIVLMRHG 171 (189)
T ss_pred HHHHHHhcC
Confidence 998876444
No 14
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2.4e-37 Score=224.79 Aligned_cols=187 Identities=34% Similarity=0.551 Sum_probs=155.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||+++|..+.+.. +.++.+.++....+ ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 46666554443332 3478999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CCcCCHHHHHHHHHHhC-----
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-------------------KKVVSYETAKAFADEIG----- 139 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 139 (198)
|++++++|..+..|+..+......+.|+++|+||+|+.+ .+.+..+++..+++..+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999888777766556789999999999975 46778889999998876
Q ss_pred ---------CcEEEEeccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCCcc
Q 043946 140 ---------IPFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 196 (198)
Q Consensus 140 ---------~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 196 (198)
++|+++||++|.||+++|.++.+.+.....+...+ .++.......+.++.+|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAE-ANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhh-hhhhhccccCCCcccCCCCCC
Confidence 68999999999999999999999998766665553 333355555667788888898
No 15
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7e-37 Score=219.43 Aligned_cols=190 Identities=48% Similarity=0.906 Sum_probs=160.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
+||+++|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999887653 5667777677666778888889999999999999888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
+|+++++++..+..|+..+......+.|+++|+||+|+...+.+..++...++..++++|+++||++|.|++++|++|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998876667999999999999766667778888898889999999999999999999999999
Q ss_pred HHHHhhhcCcCCCCCCCCccccCCCCCCCCCCcc
Q 043946 163 DIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 196 (198)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 196 (198)
.+.+...+.+...+ -..++.....+++++||
T Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 161 ELKHRKYEQPDEGK---FKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHhccccCCCCc---EEeccccCcccccCCCC
Confidence 99876433222211 12445556778888898
No 16
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-38 Score=207.24 Aligned_cols=191 Identities=58% Similarity=0.928 Sum_probs=168.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++.+|+|.+|+|||+|+.+|....+..+|..+++.++..+++.++|..++++|||++|++.|..+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||+++.+||.+...|++.++..+. ..|-++|+||.|.++.+.+..+++..++...++.+|++|+++..|++.+|.-|.
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit 165 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCIT 165 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHH
Confidence 9999999999999999999988766 689999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHhh-hcCcCCCCCCCCccccCCCCCCCCCCcc
Q 043946 162 ADIKNRM-ASQPAMNNARPPTVQIKGQPVNQKASCC 196 (198)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~cc 196 (198)
+.+.+.. .+.... .+.....+.+++.. ++.||
T Consensus 166 ~qvl~~k~r~~~~~--~r~~~~~l~~n~~~-~~k~c 198 (198)
T KOG0079|consen 166 KQVLQAKLRESVEQ--QRADAVSLKDNSKS-TKKCC 198 (198)
T ss_pred HHHHHHHHhhcHHH--HhhcceEeccCCCc-cccCC
Confidence 9888755 333222 23344444444443 34676
No 17
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=5e-37 Score=219.99 Aligned_cols=185 Identities=31% Similarity=0.578 Sum_probs=156.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|.+|||||||+++|..+.+...+.++.+.... ..+..++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999988887777777664443 455677877899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988876543 4689999999999977667777778888888899999999999999999999999
Q ss_pred HHHHHhhhcCcCCCCCCCCccccCCCCCCCCCCccC
Q 043946 162 ADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCS 197 (198)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 197 (198)
+.+.++......+ .........++.+|||
T Consensus 160 ~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 160 RALRQQRQGGQGP-------KGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHhhcccCCC-------cCCCCCcccccccCce
Confidence 9888766664311 3345566777777886
No 18
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.5e-36 Score=212.25 Aligned_cols=166 Identities=67% Similarity=1.149 Sum_probs=152.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
|+.+||+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 68899999999999999999999999988888888888887778888888899999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766679999999999998776677888888999999999999999999999999999
Q ss_pred HHHHHH
Q 043946 161 TADIKN 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998864
No 19
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.9e-36 Score=213.81 Aligned_cols=185 Identities=56% Similarity=0.886 Sum_probs=158.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999887778888887787788888888899999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|+++++++..+..|+..+......+.|+++++||.|+.+...+..++...++...+++++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999988766678999999999998766677788888888889999999999999999999999999
Q ss_pred HHHhhhcCcCCCCCCCCccccCCCCCCCCCCcc
Q 043946 164 IKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 196 (198)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 196 (198)
+.++......+. ..-.+...|+.||
T Consensus 161 ~~~~~~~~~~~~--------~~~~~~~~~~~~~ 185 (188)
T cd04125 161 IIKRLEEQELSP--------KNIKQQFKKKNNC 185 (188)
T ss_pred HHHHhhcCcCCc--------cccccccccccCc
Confidence 987544432221 2233445566666
No 20
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=3.6e-36 Score=211.23 Aligned_cols=165 Identities=48% Similarity=0.885 Sum_probs=150.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+++|++|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 1 ~~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 1 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999998888888888777777778888888999999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+++++++||++|.|++++|.++.
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988777666789999999999987777788889999999999999999999999999999999
Q ss_pred HHHHH
Q 043946 162 ADIKN 166 (198)
Q Consensus 162 ~~~~~ 166 (198)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87753
No 21
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.3e-37 Score=204.60 Aligned_cols=197 Identities=41% Similarity=0.678 Sum_probs=170.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQ-DGKTVKLQIWDTAGQERFRTITSSYYRGAHGI 79 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 79 (198)
+|.+|.+|+|.+-+|||+|++++..+++.+-..|+.+.++..+.++. +|..+++++|||+|++.+..+.+.|+++.-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 57899999999999999999999999999999999999887777665 46678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcC-CC-CcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043946 80 IIVYDVTDQESFNNVKQWLNEIDRYAS-EN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
++|||++++.||.++..|+.+...+.. +. .-+.+|++|+|+...+++..++.++++..+++.|+++|+++|.|++|.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 999999999999999999988766654 33 4457788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcCCC--------CCCCCccccCCCCCCCCCCccC
Q 043946 158 MAMTADIKNRMASQPAMN--------NARPPTVQIKGQPVNQKASCCS 197 (198)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~cc~ 197 (198)
..|.+.+.....+..... .-.|..++-++...+..+.|||
T Consensus 166 ~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 166 DMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence 999999988777622221 1344555566666777788988
No 22
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-35 Score=214.51 Aligned_cols=171 Identities=45% Similarity=0.790 Sum_probs=150.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQ-DGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
|.+||+|+|.+|||||||+++|....+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..++.++|+++
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 5799999999999999999999998888777788877777777766 456789999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
+|||+++++++..+..|+..+..... ...|+++|+||.|+.+...+..++...+++.++++++++||++|.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 35778999999999877777888889999999999999999999999999999
Q ss_pred HHHHHHHhhhcCc
Q 043946 160 MTADIKNRMASQP 172 (198)
Q Consensus 160 l~~~~~~~~~~~~ 172 (198)
|.+.+.++.....
T Consensus 161 l~~~~~~~~~~~~ 173 (211)
T cd04111 161 LTQEIYERIKRGE 173 (211)
T ss_pred HHHHHHHHhhcCC
Confidence 9999987766543
No 23
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=3.5e-35 Score=210.97 Aligned_cols=188 Identities=34% Similarity=0.634 Sum_probs=155.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
+||+|+|.+|||||||+++|..+.+.. .+.++.+.++....+..++..+.+.+||++|.+.+..++..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999988764 5677777777777888999889999999999999888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK----KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ..+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998886653 36899999999998542 23445677778888889999999999999999999
Q ss_pred HHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCCcc
Q 043946 159 AMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 196 (198)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 196 (198)
+|.+.+.+...+..... +...+..++.+..++||
T Consensus 160 ~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 193 (193)
T cd04118 160 KVAEDFVSRANNQMNTE----KGVDLGQKKNSYFYSCC 193 (193)
T ss_pred HHHHHHHHhcccccCCC----CccccCCcCCCCCCCCC
Confidence 99999987655442222 22223344556888898
No 24
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-36 Score=199.01 Aligned_cols=177 Identities=49% Similarity=0.798 Sum_probs=166.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
||.+|++++|+.|.|||+|+.+|+..++......++++++..+.+.++++.++++||||+|++.|......|++.+.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++++|..+..|+...+.+...++-+++++||.|+.+.+++...+...++++..+.+.++|+++|+|++|.|-..
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c 166 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 166 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcCCCCC
Q 043946 161 TADIKNRMASQPAMNNA 177 (198)
Q Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (198)
.+.+..+.+.....+.+
T Consensus 167 ~~tIl~kIE~GElDPer 183 (214)
T KOG0086|consen 167 ARTILNKIESGELDPER 183 (214)
T ss_pred HHHHHHHHhhcCCCHHH
Confidence 99888877765554443
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.9e-35 Score=208.54 Aligned_cols=166 Identities=33% Similarity=0.558 Sum_probs=147.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||++|.+.+..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999988877778876444 45577888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.++.++...+++..+++|+++||++|.|++++|++|.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999888876533 5799999999999987777888888999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 043946 162 ADIKNRMA 169 (198)
Q Consensus 162 ~~~~~~~~ 169 (198)
+.+.+...
T Consensus 161 ~~~~~~~~ 168 (172)
T cd04141 161 REIRRKES 168 (172)
T ss_pred HHHHHhcc
Confidence 98886443
No 26
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.2e-35 Score=207.14 Aligned_cols=165 Identities=86% Similarity=1.330 Sum_probs=149.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+++|++|||||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 46899999999999999999999988877778888877777888888888899999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||+++++++..+..|+..+......+.|+++++||+|+.....+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999998877656789999999999987777778888999999999999999999999999999999
Q ss_pred HHHHH
Q 043946 162 ADIKN 166 (198)
Q Consensus 162 ~~~~~ 166 (198)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01869 161 REIKK 165 (166)
T ss_pred HHHHh
Confidence 87753
No 27
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=211.40 Aligned_cols=168 Identities=36% Similarity=0.662 Sum_probs=146.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 58999999999999999999999888777777776544 46677888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||+++++++..+..|+..+..... .+.|+++|+||+|+.+...+..++...++..++++++++||++|.|++++|++|.
T Consensus 84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999988876543 4789999999999976666677778888888889999999999999999999999
Q ss_pred HHHHHhhhcC
Q 043946 162 ADIKNRMASQ 171 (198)
Q Consensus 162 ~~~~~~~~~~ 171 (198)
+.+.+...+.
T Consensus 164 ~~l~~~~~~~ 173 (189)
T PTZ00369 164 REIRKYLKED 173 (189)
T ss_pred HHHHHHhhcc
Confidence 9887654443
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.3e-35 Score=207.37 Aligned_cols=160 Identities=35% Similarity=0.660 Sum_probs=143.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||+.++..+.+...+.++.+..+ ...+..++..+++.+||++|++.+..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999888889887655 355778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC----------cCCHHHHHHHHHHhCC-cEEEEeccCCC
Q 043946 84 DVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDKK----------VVSYETAKAFADEIGI-PFMETSAKDSL 151 (198)
Q Consensus 84 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 151 (198)
|++++.+|..+ ..|+..+.... .+.|+++|+||+|+.+.+ .+..++...+++..++ .|+++||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999987765 479999999999996532 4778899999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTADIK 165 (198)
Q Consensus 152 ~i~~~~~~l~~~~~ 165 (198)
||+++|+.+.+.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 29
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=210.73 Aligned_cols=169 Identities=51% Similarity=0.894 Sum_probs=152.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|++|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|.+.+..++..++..+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999998887777888887777778888888889999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++++||+|+.+.+.+..++.+++++.++++++++|++++.|++++|+++
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988876666679999999999998777778889999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 043946 161 TADIKNRMA 169 (198)
Q Consensus 161 ~~~~~~~~~ 169 (198)
.+.+.++..
T Consensus 164 ~~~~~~~~~ 172 (210)
T PLN03108 164 AAKIYKKIQ 172 (210)
T ss_pred HHHHHHHhh
Confidence 999876544
No 30
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4e-35 Score=208.46 Aligned_cols=167 Identities=44% Similarity=0.833 Sum_probs=148.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD----------GKTVKLQIWDTAGQERFRTITS 70 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 70 (198)
+|.+||+++|++|||||||+++|....+...+.++.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 478999999999999999999999999888888888877766666554 4568899999999999999999
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccC
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD 149 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 149 (198)
.+++++|++++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++.++++++++||++
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999999999999998876542 4689999999999987777788888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 043946 150 SLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~~ 167 (198)
|.|++++|++|.+.+.++
T Consensus 162 ~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 162 GTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999887654
No 31
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.9e-35 Score=208.85 Aligned_cols=162 Identities=31% Similarity=0.599 Sum_probs=145.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|..+.+...+.|+.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 4689999999999999999999999998888888875554 567888988999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD------------KKVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.+|..+ ..|+..+.... .+.|+++|+||.|+.+ .+.++.++++++++.+++ +|+++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 9999999999997 78999988765 4689999999999864 235788999999999996 8999999
Q ss_pred cCCCC-HHHHHHHHHHHHH
Q 043946 148 KDSLN-VEQAFMAMTADIK 165 (198)
Q Consensus 148 ~~~~~-i~~~~~~l~~~~~ 165 (198)
++|.| |+++|+.+++.+.
T Consensus 162 k~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 162 LQSENSVRDIFHVATLACV 180 (182)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 99998 9999999998654
No 32
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-36 Score=195.70 Aligned_cols=171 Identities=51% Similarity=0.970 Sum_probs=162.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
||-+|++|+|.+.+|||||+.++++..+...+.++.+.++..+++.-..+.+++++|||+|++.+..+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 57789999999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
++||+++.+||..++.|.-.+..+.-.+.|+|+|+||+|+.+++.++.+....++..+|..|+++||+.+.|++.+|+.+
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l 178 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL 178 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 043946 161 TADIKNRMASQ 171 (198)
Q Consensus 161 ~~~~~~~~~~~ 171 (198)
...+-+.+.+.
T Consensus 179 v~~Ic~kmses 189 (193)
T KOG0093|consen 179 VDIICDKMSES 189 (193)
T ss_pred HHHHHHHhhhh
Confidence 99888766543
No 33
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=8.9e-35 Score=212.53 Aligned_cols=164 Identities=28% Similarity=0.552 Sum_probs=146.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..++..+|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 3589999999999999999999999998888898876654 457888999999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD------------KKVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++++|..+ ..|+..+.... .+.|+++|+||+|+.+ .+.++.++++++++.+++ .|+++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 9999999999974 78999888765 3689999999999864 256788999999999998 6999999
Q ss_pred cCCC-CHHHHHHHHHHHHHHh
Q 043946 148 KDSL-NVEQAFMAMTADIKNR 167 (198)
Q Consensus 148 ~~~~-~i~~~~~~l~~~~~~~ 167 (198)
++|. ||+++|+.+...+.++
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9997 8999999999988764
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.9e-35 Score=212.64 Aligned_cols=164 Identities=35% Similarity=0.582 Sum_probs=147.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG-KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
+||+++|.+|||||||+++|....+...+.++.+.++....+.+++ ..+.+.+||++|++.+..++..++..+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888889988888777787764 468999999999999888999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877643 34689999999999877777888889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 043946 160 MTADIKNR 167 (198)
Q Consensus 160 l~~~~~~~ 167 (198)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988754
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=4.3e-35 Score=204.74 Aligned_cols=160 Identities=51% Similarity=0.922 Sum_probs=146.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||++++..+.+.+.+.++.+.+.....+..++..+.+.+||++|.+.+..++..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999988888888888777788888888899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|+++++++..+..|+..+......+.|+++|+||.|+.+.+.+..++...+++.++++|+++||++|.|++++|++|.+.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877665679999999999998777778889999999999999999999999999999999864
No 36
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=8e-35 Score=204.75 Aligned_cols=166 Identities=53% Similarity=0.932 Sum_probs=151.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+++|.+|||||||++++.+..+...+.++.+.+.....+..++....+.+||++|.+.+..++..+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 57899999999999999999999998887777788888887788888888889999999999998888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||.|+.+...+..++.+.++...++.++++|++++.|++++|.++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766679999999999998766777888888999999999999999999999999999
Q ss_pred HHHHHH
Q 043946 161 TADIKN 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=8.2e-35 Score=204.13 Aligned_cols=163 Identities=53% Similarity=0.964 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999888788888877777777777777789999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|+++++++..+..|+..+......+.|+++|+||+|+.+.+.+..++..+++..++++++++||++|.|++++|++|.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665678999999999998776667788888888888999999999999999999999887
Q ss_pred HHH
Q 043946 164 IKN 166 (198)
Q Consensus 164 ~~~ 166 (198)
+.+
T Consensus 162 ~~~ 164 (165)
T cd01865 162 ICD 164 (165)
T ss_pred HHh
Confidence 643
No 38
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=7.9e-35 Score=204.14 Aligned_cols=164 Identities=55% Similarity=0.903 Sum_probs=149.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+++|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 57899999999999999999999998887778888888888888888888889999999999998888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||.|+.+.+....++...++...+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999888766679999999999998777777888888888888999999999999999999999
Q ss_pred HHHH
Q 043946 161 TADI 164 (198)
Q Consensus 161 ~~~~ 164 (198)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8764
No 39
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1e-34 Score=208.08 Aligned_cols=163 Identities=31% Similarity=0.578 Sum_probs=142.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|..|||||||+++|..+.+.+.+.++.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3589999999999999999999999998888888875543 456678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------cCCHHHHHHHHHHhC-CcEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEIG-IPFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~ 147 (198)
|||++++.+|..+. .|...+.... .+.|+++|+||.|+.+.. .+..++...+++.++ .+|+++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 5888776654 479999999999996542 356678888999888 58999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~ 166 (198)
++|.|++++|++|.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 40
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.7e-36 Score=198.35 Aligned_cols=167 Identities=38% Similarity=0.746 Sum_probs=157.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+++|..-+|||||+-|+...++...+.++....+..+.+.+++....+.||||+|++.|..+-+.|++..+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 57899999999999999999999999988888888777888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++|++||..+..|..+++.+.+..+-++||+||+|+.+.+.+..++.+.++..-|+.|+++||+++.||.|+|+.|.
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 043946 162 ADIKNRM 168 (198)
Q Consensus 162 ~~~~~~~ 168 (198)
..+.++.
T Consensus 172 ~~MiE~~ 178 (218)
T KOG0088|consen 172 AKMIEHS 178 (218)
T ss_pred HHHHHHh
Confidence 8887755
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=9.6e-35 Score=203.97 Aligned_cols=162 Identities=31% Similarity=0.698 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|.+.+..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888899888888888888888899999999999998889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS-----ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
|++++.++..+..|+..+..... .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877654 4689999999999976556678888888888889999999999999999999
Q ss_pred HHHHHHH
Q 043946 159 AMTADIK 165 (198)
Q Consensus 159 ~l~~~~~ 165 (198)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 42
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-34 Score=205.21 Aligned_cols=161 Identities=32% Similarity=0.590 Sum_probs=142.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999998888888875553 5677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCcCCHHHHHHHHHHhCC-cEEEEecc
Q 043946 83 YDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD------------KKVVSYETAKAFADEIGI-PFMETSAK 148 (198)
Q Consensus 83 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~ 148 (198)
||++++++|..+ ..|+..+.... .+.|+++|+||.|+.+ .+.+..++..++++.+++ .|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999888765 4689999999999864 235788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 043946 149 DSLN-VEQAFMAMTADIK 165 (198)
Q Consensus 149 ~~~~-i~~~~~~l~~~~~ 165 (198)
+|.+ ++++|..+.+...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998644
No 43
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.5e-34 Score=202.81 Aligned_cols=163 Identities=53% Similarity=0.958 Sum_probs=147.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+++|++|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 57899999999999999999999988888777788877777788888888789999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~ 159 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+. .++++|+++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999876666799999999999987777777888888888886 6899999999999999999
Q ss_pred HHHH
Q 043946 160 MTAD 163 (198)
Q Consensus 160 l~~~ 163 (198)
|.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 9865
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.5e-34 Score=203.65 Aligned_cols=162 Identities=27% Similarity=0.569 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|..|||||||+++|..+.+.+.+.++.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999888887788888998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----CcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK-----KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
|++++.++..+..|+..+........| ++|+||+|+... .....++...+++..+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776555566 678999998521 11224566778888889999999999999999999
Q ss_pred HHHHHHHH
Q 043946 159 AMTADIKN 166 (198)
Q Consensus 159 ~l~~~~~~ 166 (198)
+|.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988875
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=6.7e-34 Score=206.91 Aligned_cols=164 Identities=27% Similarity=0.552 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+|+|.+|||||||+++|..+.++..+.|+.+..+. ..+.+++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 79999999999999999999999998889998876554 56788898999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEeccC
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSAKD 149 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 149 (198)
|++++++|..+. .|...+... ..+.|+++|+||+|+.+. ..++.++...+++..++ .|+++||++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999985 577666544 357999999999999642 13677889999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHHhhh
Q 043946 150 SLN-VEQAFMAMTADIKNRMA 169 (198)
Q Consensus 150 ~~~-i~~~~~~l~~~~~~~~~ 169 (198)
+.+ |+++|+.+......+..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 160 SERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CCcCHHHHHHHHHHHHHhccC
Confidence 884 99999999998776444
No 46
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=4e-34 Score=199.96 Aligned_cols=161 Identities=47% Similarity=0.873 Sum_probs=152.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|+++||||||+++|.+..+.+.+.++.+.+.....+..++..+.+.+||++|++.+...+..++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998888888999999999999999999999998888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
+++++++..+..|+..+......+.|+++++||.|+.+.+.++.++++++++.++++|+++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999988788899999999999999999999999999999999999887
Q ss_pred H
Q 043946 165 K 165 (198)
Q Consensus 165 ~ 165 (198)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 47
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=205.09 Aligned_cols=166 Identities=52% Similarity=0.805 Sum_probs=142.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|....+. .+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4689999999999999999999987763 566777777777778888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQ-WLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
|||+++++++..+.. |...+.... ..+.|+++|+||+|+.....+..++...++...++.|+++||+++.|++++|++
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999876 656555433 245799999999999876667777888888888999999999999999999999
Q ss_pred HHHHHHHhh
Q 043946 160 MTADIKNRM 168 (198)
Q Consensus 160 l~~~~~~~~ 168 (198)
|.+.+.+..
T Consensus 172 l~~~~~~~~ 180 (211)
T PLN03118 172 LALKIMEVP 180 (211)
T ss_pred HHHHHHhhh
Confidence 999887643
No 48
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-35 Score=191.17 Aligned_cols=169 Identities=48% Similarity=0.863 Sum_probs=159.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+++|..|+|||+|+++|..+-+++....+++.++-.+++++++.+++++||||+|++++..+...|++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++...+|+-+..|+.++..+...++--|+|+||+|+.+.++++.+..++++....+-|+++||++-.|++.+|..+.
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 99999999999999999999999988888899999999999889988889999999999999999999999999999998
Q ss_pred HHHHHhhhc
Q 043946 162 ADIKNRMAS 170 (198)
Q Consensus 162 ~~~~~~~~~ 170 (198)
-.+......
T Consensus 166 ~rli~~ar~ 174 (213)
T KOG0095|consen 166 CRLISEARQ 174 (213)
T ss_pred HHHHHHHHh
Confidence 877665544
No 49
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=5.9e-34 Score=199.19 Aligned_cols=160 Identities=41% Similarity=0.716 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999998888777777765 344566778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++.++++++++||++|.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 47899999999999766666677777788888899999999999999999999987
Q ss_pred HH
Q 043946 163 DI 164 (198)
Q Consensus 163 ~~ 164 (198)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 50
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=1.1e-33 Score=197.98 Aligned_cols=163 Identities=63% Similarity=1.010 Sum_probs=148.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||.+.+...+..++..+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999998887778888888888888888888889999999999988888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|++++.++..+..|+..+......+.|+++++||+|+........+.+.++++..+++++++|+++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887765689999999999997766677788888888889999999999999999999999988
Q ss_pred HHH
Q 043946 164 IKN 166 (198)
Q Consensus 164 ~~~ 166 (198)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 764
No 51
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.9e-34 Score=202.49 Aligned_cols=166 Identities=29% Similarity=0.595 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
+||+|+|.+|||||||+++|.++.+...+.++.+.++.. .+... +..+.+.+||+||++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 589999999999999999999998887877777655543 35554 6678999999999999988899999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----CcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK----KVVSYETAKAFADEIGI-PFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 156 (198)
||++++.++..+. .|+..+.... .+.|+++|+||.|+... +.+..++..+++..+++ +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999886 4887776543 47899999999998653 24567888889999988 8999999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 043946 157 FMAMTADIKNRMASQ 171 (198)
Q Consensus 157 ~~~l~~~~~~~~~~~ 171 (198)
|+++.+.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999998655443
No 52
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=7.7e-34 Score=198.36 Aligned_cols=160 Identities=49% Similarity=0.861 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 68999999999999999999998887777888877777778888888889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|++++.++..+..|+..+......+.|+++++||+|+.....+..+++..++...++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999998766777888888999999999999999999999999999875
No 53
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=9.9e-34 Score=200.29 Aligned_cols=160 Identities=29% Similarity=0.532 Sum_probs=139.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
++||+++|.+|||||||+++|..+.+...+.|+.+..+. ..+..++..+.+.+||++|++.+..++..++..+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 489999999999999999999999988888888875554 4567788889999999999999998999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhC-CcEEEEecc
Q 043946 83 YDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIG-IPFMETSAK 148 (198)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~~ 148 (198)
||+++++++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++.++++..+ ..|+++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 5888886654 46899999999998643 4566778888888887 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 043946 149 DSLNVEQAFMAMTADI 164 (198)
Q Consensus 149 ~~~~i~~~~~~l~~~~ 164 (198)
+|.|++++|+.+.+.+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998753
No 54
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1e-33 Score=206.67 Aligned_cols=165 Identities=30% Similarity=0.557 Sum_probs=145.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 91 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII 91 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEE
Confidence 56899999999999999999999988888888998888887778778778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .+..+++ .+++..++.|+++||++|.|++++|+||.
T Consensus 92 vfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence 999999999999999999987764 46999999999998643 3344555 67777889999999999999999999999
Q ss_pred HHHHHhhh
Q 043946 162 ADIKNRMA 169 (198)
Q Consensus 162 ~~~~~~~~ 169 (198)
+.+.+..+
T Consensus 169 ~~~~~~~~ 176 (219)
T PLN03071 169 RKLAGDPN 176 (219)
T ss_pred HHHHcCcc
Confidence 98876543
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.1e-33 Score=198.22 Aligned_cols=161 Identities=38% Similarity=0.699 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||++++..+.+.+.+.++.+... ...+..++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999998888777777766444 356778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|++++.++..+..|+..+.... ..+.|+++++||+|+.+...+..++...+++..+++++++||++|.|++++|.+|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887653 357999999999999876666777778888888899999999999999999999987
Q ss_pred HHH
Q 043946 163 DIK 165 (198)
Q Consensus 163 ~~~ 165 (198)
.+.
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 653
No 56
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=2e-33 Score=197.19 Aligned_cols=160 Identities=31% Similarity=0.643 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887778888887777777777888899999999999998888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|+++++++..+..|+..+..... +.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 7999999999999733 333 33445666777899999999999999999999988
Q ss_pred HHH
Q 043946 164 IKN 166 (198)
Q Consensus 164 ~~~ 166 (198)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 865
No 57
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.9e-33 Score=200.33 Aligned_cols=161 Identities=33% Similarity=0.563 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
.||+++|++|||||||+++|..+.+...+.++.+..+. ..+..++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999888777787765543 45667787789999999999999889999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------cCCHHHHHHHHHHhC-CcEEEEeccC
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEIG-IPFMETSAKD 149 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~S~~~ 149 (198)
|+++++++..+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...++...+ ++|+++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 5888887654 479999999999996543 234566677777776 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTADIKN 166 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~ 166 (198)
|.|++++|++|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988873
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=2.8e-33 Score=195.62 Aligned_cols=159 Identities=37% Similarity=0.704 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD--GKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+||+++|.+|+|||||+++|..+.+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988887888888877766666666 667899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||+++++++..+..|+..+.... .+.|+++|+||+|+.....+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998886654 4699999999999977667778888889999999999999999999999999987
Q ss_pred HH
Q 043946 162 AD 163 (198)
Q Consensus 162 ~~ 163 (198)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 59
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=4.4e-33 Score=196.14 Aligned_cols=162 Identities=40% Similarity=0.665 Sum_probs=142.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988999998888877888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCc--CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKV--VSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
+++++++..+..|+..+.... ....|+++|+||+|+..... ...++...++..++++++++||++|.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999998875543 34578999999999865433 235566677788889999999999999999999999
Q ss_pred HHHHH
Q 043946 162 ADIKN 166 (198)
Q Consensus 162 ~~~~~ 166 (198)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88864
No 60
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=3.9e-33 Score=196.50 Aligned_cols=161 Identities=43% Similarity=0.740 Sum_probs=142.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|..+.+.+.+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 57999999999999999999999988887777887777777788888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQA 156 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 156 (198)
|||+++++++..+..|...+..... .+.|+++|+||+|+. .+.+..+++++++..++. +++++||++|.|+.++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999988766542 468999999999986 445677888889888884 7999999999999999
Q ss_pred HHHHHHH
Q 043946 157 FMAMTAD 163 (198)
Q Consensus 157 ~~~l~~~ 163 (198)
|+++.+.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999865
No 61
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=6.2e-33 Score=194.06 Aligned_cols=162 Identities=50% Similarity=0.816 Sum_probs=146.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999888776777777777778888898889999999999998888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
+|+++++++..+..|+..+......+.|+++++||+|+........++...++...+++++++|+++|.|++++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999988776567999999999999766666788888888888999999999999999999999988
Q ss_pred HH
Q 043946 163 DI 164 (198)
Q Consensus 163 ~~ 164 (198)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=5.8e-33 Score=195.66 Aligned_cols=163 Identities=46% Similarity=0.856 Sum_probs=145.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR-TITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i 80 (198)
+.+||+++|++|||||||++++....+...+.++.+.+.....+.+++..+.+.+||++|++.+. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 36899999999999999999999988887788888877877888889988999999999998876 57888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccC---CCCHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD---SLNVEQA 156 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~---~~~i~~~ 156 (198)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++..++++..+++|+++||++ +.+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 99999999999999999988876543 5699999999999987777778888889988889999999999 8899999
Q ss_pred HHHHHHHH
Q 043946 157 FMAMTADI 164 (198)
Q Consensus 157 ~~~l~~~~ 164 (198)
|.+|.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998765
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=3.9e-33 Score=195.15 Aligned_cols=161 Identities=37% Similarity=0.653 Sum_probs=140.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||++++..+.+.+.+.++.+ +.....+..++..+.+.+||+||.+.+..++..++.++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999888777777654 44556777888888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..++...++...+++++++||++|.|++++|.+|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888876543 5799999999999976656666677778888888999999999999999999998
Q ss_pred HHH
Q 043946 162 ADI 164 (198)
Q Consensus 162 ~~~ 164 (198)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 654
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=6e-33 Score=193.89 Aligned_cols=160 Identities=36% Similarity=0.592 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||+++|....+.+.+.++.+.+........++..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887777777666666666777888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|++++.++..+..|+..+.... .+.|+++|+||+|+... ..++...++...+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999887653 36899999999998432 2344556667778899999999999999999999988
Q ss_pred HHHh
Q 043946 164 IKNR 167 (198)
Q Consensus 164 ~~~~ 167 (198)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8765
No 65
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=5.1e-33 Score=194.13 Aligned_cols=160 Identities=42% Similarity=0.738 Sum_probs=144.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+++.+||+||.+.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998888778888888888888888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|+++++++..+..|+..+......+.|+++++||+|+.+......++...+++..+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876655569999999999997666677788888888889999999999999999999999874
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=6e-33 Score=194.66 Aligned_cols=158 Identities=35% Similarity=0.556 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||++++.++.+...+.++.+..+ ...+...+..+.+.+||++|.+.+..++..++..+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777765444 345566777789999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|+++++++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++..+++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887776543 468999999999997666677777778888888999999999999999999999
Q ss_pred HH
Q 043946 161 TA 162 (198)
Q Consensus 161 ~~ 162 (198)
.+
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 67
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.9e-33 Score=194.80 Aligned_cols=161 Identities=41% Similarity=0.737 Sum_probs=139.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+|+|++|||||||+++|.+..+...+.++.+. .....+..++..+.+.+||+||++.+..++..++..+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIED-SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhh-hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999988887776666653 33456677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|+++++++..+..|+..+..... .+.|+++|+||+|+...+....+++..+++..+++++++||++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999998887766533 46899999999999776666777888888888999999999999999999999998
Q ss_pred HHH
Q 043946 163 DIK 165 (198)
Q Consensus 163 ~~~ 165 (198)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 68
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=6.3e-33 Score=196.01 Aligned_cols=159 Identities=32% Similarity=0.575 Sum_probs=137.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||+.++..+.+...+.++... .....+..++..+.+.+||++|++.+..++..++..+|++|+|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 379999999999999999999999888888888753 3345667788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEecc
Q 043946 83 YDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSAK 148 (198)
Q Consensus 83 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~ 148 (198)
||++++++|..+. .|+..+.... .+.|+++|+||.|+.+. +.+..++..++++.++. +++++||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999985 5888776654 47999999999999642 24677888889998884 89999999
Q ss_pred CCCCHHHHHHHHHHH
Q 043946 149 DSLNVEQAFMAMTAD 163 (198)
Q Consensus 149 ~~~~i~~~~~~l~~~ 163 (198)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998764
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.1e-32 Score=192.30 Aligned_cols=160 Identities=36% Similarity=0.680 Sum_probs=138.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|++|||||||+++|.++.+...+.++.+... ...+.+++..+.+.+||++|++.+..++..++..+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999888777777765443 45567788778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+ +....++...+++..+++++++||++|.|++++|++|.
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988888876643 4789999999999975 34556777888888889999999999999999999998
Q ss_pred HHH
Q 043946 162 ADI 164 (198)
Q Consensus 162 ~~~ 164 (198)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 654
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=1.9e-32 Score=191.69 Aligned_cols=161 Identities=39% Similarity=0.646 Sum_probs=139.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|+|||||++++.+..+...+.++.+.. ......+++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 5899999999999999999999887766666666533 345566788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||++++.++..+..|+..+.... ..+.|+++++||+|+.....+..++..++++..+++++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999988887653 34789999999999977666667778888888889999999999999999999998
Q ss_pred HHH
Q 043946 162 ADI 164 (198)
Q Consensus 162 ~~~ 164 (198)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 71
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.6e-32 Score=197.42 Aligned_cols=166 Identities=22% Similarity=0.337 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT--------ITSSYYRG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 75 (198)
+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||+||.+.+.. .....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999888877888877666656677888888999999999654321 12345789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-HhCCcEEEEeccCCC
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SENVNKLLVGNKCDLTDKKVVSYETAKAFAD-EIGIPFMETSAKDSL 151 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~ 151 (198)
+|++|+|||+++++++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++. .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887664 3579999999999997666566666666654 568999999999999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 043946 152 NVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~~~~ 169 (198)
|++++|+.+.+.+..+-.
T Consensus 161 ~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 161 HILLLFKELLISATTRGR 178 (198)
T ss_pred CHHHHHHHHHHHhhccCC
Confidence 999999999988875443
No 72
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2.7e-32 Score=190.42 Aligned_cols=161 Identities=40% Similarity=0.754 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|+|||||+++|.+..+...+.++...+.....+...+..+.+.+||+||++.+..++..++..+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999988877666666666666667777787789999999999988888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|+++++++..+..|+..+......+.|+++++||+|+.....+..+++++++...+.+++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999988887766679999999999998766677788888888889999999999999999999999876
Q ss_pred H
Q 043946 164 I 164 (198)
Q Consensus 164 ~ 164 (198)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 4
No 73
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=2.4e-32 Score=196.30 Aligned_cols=158 Identities=28% Similarity=0.589 Sum_probs=139.7
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh
Q 043946 9 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ 88 (198)
Q Consensus 9 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (198)
+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888878888888888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 043946 89 ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 89 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
.++..+..|+..+.... .+.|+++|+||+|+... .+..+. ..+++..++.|+++||++|.||+++|++|.+.+.+..
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~ 157 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 157 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999998765 47999999999998643 344444 3577788899999999999999999999999887653
Q ss_pred h
Q 043946 169 A 169 (198)
Q Consensus 169 ~ 169 (198)
+
T Consensus 158 ~ 158 (200)
T smart00176 158 N 158 (200)
T ss_pred c
Confidence 3
No 74
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=179.56 Aligned_cols=196 Identities=42% Similarity=0.787 Sum_probs=173.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
|.+|-+++|.-|+|||+|+..|...++....+.++++++..+.+++.+.+++++|||++|++++......|++.+.+.+.
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 67899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++.+..+.++..|+...+....++.-+++++||.|+...+.+..++.++++.+.+..++++|+++|.++++.|-.-.
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 99999999999999999988888888888999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHhhhcCcCCC----------CCCCCccccCCCCCCCCCCccC
Q 043946 162 ADIKNRMASQPAMN----------NARPPTVQIKGQPVNQKASCCS 197 (198)
Q Consensus 162 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~cc~ 197 (198)
+.+.+.....+... ...|....+...+..++-+|-|
T Consensus 170 kkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c 215 (215)
T KOG0097|consen 170 KKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC 215 (215)
T ss_pred HHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence 77776555432221 1233344456677777888866
No 75
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-34 Score=191.95 Aligned_cols=195 Identities=39% Similarity=0.734 Sum_probs=165.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC---------CeEEEEEEEeCCCcccccccccc
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD---------GKTVKLQIWDTAGQERFRTITSS 71 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~ 71 (198)
||.||.+.+|.+|+|||||+.++.++++....+++.++++..+.+... +..+.+++|||+|++++.++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 578999999999999999999999999999999999998877766542 35578999999999999999999
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCC
Q 043946 72 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE-NVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDS 150 (198)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 150 (198)
|++++=+++++||++++.||.++..|+.++..+... +.-+++++||+|+.+.+.++.+++..++.++++||+++||-+|
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 999999999999999999999999999999877663 4557888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCcCCCCC-----CCCccccCCCCCCCCCCc
Q 043946 151 LNVEQAFMAMTADIKNRMASQPAMNNA-----RPPTVQIKGQPVNQKASC 195 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~c 195 (198)
.|+++..+.|...++++...-+....- +..+-...+.++..++.|
T Consensus 167 ~Nv~kave~LldlvM~Rie~~v~~s~~p~~~~~~~~g~~~~e~~~~~~~c 216 (219)
T KOG0081|consen 167 TNVEKAVELLLDLVMKRIEQCVEKSEIPLLVTRSNCGHLDGEEPCERKNC 216 (219)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhcccchhhhccccccCCCCCChhhhcc
Confidence 999999999999999887764333221 111223445555555555
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=4.7e-32 Score=191.13 Aligned_cols=165 Identities=43% Similarity=0.759 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999998887777777777777777888888889999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~ 158 (198)
|++++.++..+..|...+..... .+.|+++|+||+|+..+.....++...+.+..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888877655433 368999999999997655566788888888887 7999999999999999999
Q ss_pred HHHHHHHHhh
Q 043946 159 AMTADIKNRM 168 (198)
Q Consensus 159 ~l~~~~~~~~ 168 (198)
+|.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999888753
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=4.6e-32 Score=189.86 Aligned_cols=160 Identities=34% Similarity=0.626 Sum_probs=138.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD--SYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
+||+++|++|||||||+++|... .+...+.++.+.++....+... +..+.+.+||+||.+.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999854 6777888888777766666664 56689999999999988888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+...+..++...+...++++++++|++++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887664 468999999999997766667767777777788899999999999999999999
Q ss_pred HHHH
Q 043946 161 TADI 164 (198)
Q Consensus 161 ~~~~ 164 (198)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 78
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=3.5e-32 Score=201.34 Aligned_cols=161 Identities=24% Similarity=0.420 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+++..+.+.|||++|.+.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999888877777775 555677788888899999999999988888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-hCCcEEEEeccCCCCH
Q 043946 84 DVTDQESFNNVKQWLNEIDRY---------ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSLNV 153 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i 153 (198)
|++++++|..+..|+..+... ...+.|+++|+||+|+.+.+.+..+++.+++.. .++.++++||++|.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224689999999999976566777787777654 3578999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 154 EQAFMAMTADIK 165 (198)
Q Consensus 154 ~~~~~~l~~~~~ 165 (198)
+++|++|.+...
T Consensus 160 ~elf~~L~~~~~ 171 (247)
T cd04143 160 DEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHhc
Confidence 999999998664
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=4.4e-32 Score=190.89 Aligned_cols=162 Identities=22% Similarity=0.332 Sum_probs=138.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
..+||+++|.+|||||||+++|.++.+. ..+.++.+..+....+..++..+.+.+||++|.+.+..++..++.++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4789999999999999999999998887 778888877777677888888889999999999998888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~ 159 (198)
+|+|++++.++..+..|+..+.. ..+.|+++|+||+|+.+.......+..++++.+++ .++++||++|.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 99999999999988888876532 23689999999999965544434455677777777 4799999999999999999
Q ss_pred HHHHHH
Q 043946 160 MTADIK 165 (198)
Q Consensus 160 l~~~~~ 165 (198)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998775
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=1.4e-31 Score=186.87 Aligned_cols=159 Identities=55% Similarity=0.928 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+.....++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 68999999999999999999998877777788777777777778887889999999999998888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|++++.++..+..|+..+..... .+.|+++|+||+|+.. .....++...++...+++++++|+++|.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 99999999999999988877643 5789999999999973 345677888888888999999999999999999999887
Q ss_pred H
Q 043946 163 D 163 (198)
Q Consensus 163 ~ 163 (198)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=8.8e-32 Score=190.23 Aligned_cols=159 Identities=35% Similarity=0.668 Sum_probs=137.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 85 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 85 (198)
|+|+|++|||||||+++|..+.+...+.++....+ ...+..++..+.+.+||+||++.+..++..++..+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999988877777765444 35667788888999999999999988999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------cCCHHHHHHHHHHhCC-cEEEEeccCCC
Q 043946 86 TDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEIGI-PFMETSAKDSL 151 (198)
Q Consensus 86 ~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 151 (198)
++++++..+. .|+..+.... .+.|+++|+||+|+.... .+..++..++++..++ +++++||++|.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999886 5888887654 479999999999986522 2667778889999986 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTADIKN 166 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~ 166 (198)
|++++|+.|.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988753
No 82
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.4e-31 Score=187.07 Aligned_cols=163 Identities=50% Similarity=0.885 Sum_probs=143.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.++|+++|++|||||||+++|..+.+...+.++.+.+.....+.+.+..+.+.+||+||++.+...+..++..+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 36899999999999999999999877776777777777777788888888899999999999888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++.++..+..|+..+......+.|+++++||+|+.+.+.+..+....+.+.....++++|+++|.|++++|++|.
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999999888777666799999999999987666666666777777778899999999999999999998
Q ss_pred HHH
Q 043946 162 ADI 164 (198)
Q Consensus 162 ~~~ 164 (198)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 764
No 83
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-31 Score=192.28 Aligned_cols=158 Identities=30% Similarity=0.490 Sum_probs=128.5
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhcC-----CCCCCCccccee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLL-RFADD-----SYLDSYISTIGV-DFKIRT--------VEQDGKTVKLQIWDTAGQERFRT 67 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~-~l~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 67 (198)
.+||+++|..|||||||+. ++.++ .+...+.|+.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 55543 234556677642 222111 24678889999999999875 2
Q ss_pred cccccccCccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-------------------CCcCC
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD-------------------KKVVS 127 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~-------------------~~~~~ 127 (198)
....+++++|++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+ .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566899999999999999999999997 5988887664 4689999999999864 35678
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 128 YETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
.++++++++.++++|+++||++|.|++++|+.+.+.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999998763
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=7.2e-32 Score=189.17 Aligned_cols=160 Identities=34% Similarity=0.551 Sum_probs=135.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-FRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 83 (198)
||+++|++|||||||+++++.+.+...+.++..... ...+.+++..+.+.+||+||.+. .......++..+|++|+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998877666666654333 45567788888999999999885 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCC-CCHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDS-LNVEQAFMAM 160 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~-~~i~~~~~~l 160 (198)
|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++..+++|+++|+++| .|++++|++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999998887764 346999999999999766677788888899888999999999999 5999999999
Q ss_pred HHHHH
Q 043946 161 TADIK 165 (198)
Q Consensus 161 ~~~~~ 165 (198)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 88654
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=2.6e-31 Score=186.88 Aligned_cols=161 Identities=37% Similarity=0.660 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+..++..++..++++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999999999999888877777776543 3466778888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|+++++++..+..|...+.... ..+.|+++++||.|+...+....++...+++.++ ++++++||+++.|++++|++|.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988886643 3479999999999997766667777778888887 7999999999999999999998
Q ss_pred HHHH
Q 043946 162 ADIK 165 (198)
Q Consensus 162 ~~~~ 165 (198)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7764
No 86
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.6e-31 Score=194.29 Aligned_cols=164 Identities=30% Similarity=0.427 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYR-GAHGIII 81 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~i~ 81 (198)
+||+++|++|||||||+++|..+.+. ..+.++.+.+.....+.+++....+.+||++|.+. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 55556655466677788888889999999999872 23344556 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876542 478999999999997777777777888888888999999999999999999999
Q ss_pred HHHHHHhhh
Q 043946 161 TADIKNRMA 169 (198)
Q Consensus 161 ~~~~~~~~~ 169 (198)
.+.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 998875443
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=2e-31 Score=184.99 Aligned_cols=158 Identities=63% Similarity=1.022 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++....+.+||+||+..+...+..++.++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777888888888888888888889999999999988888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|+++++++..+..|+..+......+.|+++++||+|+........+++..++...+.+++++|++++.|++++|++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988887656799999999999975566678888888888889999999999999999999986
No 88
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.5e-31 Score=184.95 Aligned_cols=153 Identities=25% Similarity=0.449 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||++++..+.+.+.+.++ ...+ ...+.+++..+.+.+||++|.+. ..++..+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 58999999999999999999988776655444 2233 46678888888999999999864 34667899999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC--CCcCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTD--KKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 159 (198)
|++++++|..+..|+..+..... .+.|+++|+||.|+.. .+.+..++.+++++.. ++.|+++||++|.||+++|++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999998877653 5689999999999853 4567778888888776 489999999999999999999
Q ss_pred HHHH
Q 043946 160 MTAD 163 (198)
Q Consensus 160 l~~~ 163 (198)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=8.8e-31 Score=185.09 Aligned_cols=159 Identities=35% Similarity=0.596 Sum_probs=135.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|+|||||+++|..+.+...+.++... .....+.+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 58999999999999999999998887777666543 33446777888888999999999999989999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEeccC
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSAKD 149 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 149 (198)
|++++.++..+. .|...+... ..+.|+++++||+|+.+. ..+..+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999998885 577777655 567999999999998543 24556778888888886 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTADI 164 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~ 164 (198)
|.|++++|+.+.+.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=8.3e-31 Score=185.15 Aligned_cols=157 Identities=33% Similarity=0.565 Sum_probs=134.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+|++++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+..++..++..+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 6899999999999999999998888777777653 444456778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC------------CCcCCHHHHHHHHHHhCC-cEEEEeccC
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD------------KKVVSYETAKAFADEIGI-PFMETSAKD 149 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 149 (198)
|++++.++..+. .|+..+.... .+.|+++++||+|+.. .+.+..+++..+++..+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 6887776543 4689999999999863 345667788889998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTA 162 (198)
Q Consensus 150 ~~~i~~~~~~l~~ 162 (198)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 91
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=7.7e-31 Score=189.10 Aligned_cols=167 Identities=29% Similarity=0.458 Sum_probs=136.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|.+|||||||+++|+...+...+.++.. +.....+.+.+..+.+.+||++|+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888776666654 3455667788877899999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCcCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTD-KKVVSYETAKAFAD-EIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
++++.++..+..|+..+..... .++|+++|+||+|+.. ...+..++..+... ..+++++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999887776654 4799999999999865 34444444444333 4567899999999999999999999
Q ss_pred HHHHHhhhcCc
Q 043946 162 ADIKNRMASQP 172 (198)
Q Consensus 162 ~~~~~~~~~~~ 172 (198)
+.+.......+
T Consensus 160 ~~~~~~~~~~~ 170 (198)
T cd04147 160 RQANLPYNLSP 170 (198)
T ss_pred HHhhcccccch
Confidence 87764333333
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=1.6e-30 Score=181.88 Aligned_cols=162 Identities=42% Similarity=0.698 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|....+...+.++... ........++..+.+.+||+||++.+...+..++..+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999999988877666666543 33455677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|++++.++..+..|+..+..... .+.|+++|+||+|+........++...+...++++++++|+++|.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 47999999999999764455677777888888899999999999999999999988
Q ss_pred HHHH
Q 043946 163 DIKN 166 (198)
Q Consensus 163 ~~~~ 166 (198)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 93
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=8.3e-33 Score=178.45 Aligned_cols=189 Identities=43% Similarity=0.839 Sum_probs=161.1
Q ss_pred EEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 043946 7 LLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 85 (198)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 85 (198)
+++|.+++|||+|+-++..+.+ .....++.++++..+.+..++.++++++|||+|++++.+....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3689999999999988876655 346678889999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 86 TDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.+..||++.+.|+.++.++....+.+.+++||+|+..++.+..++.+++++.+++|++++|+++|.|++-.|..|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888889999999999888888889999999999999999999999999999999999988
Q ss_pred HhhhcCcCCCCCCCCccccCCCCCCCCCCcc
Q 043946 166 NRMASQPAMNNARPPTVQIKGQPVNQKASCC 196 (198)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 196 (198)
+..... .+..+-+.++.......+.-..||
T Consensus 161 k~~~~~-~~~~~~~~~~~v~~~~k~eia~cc 190 (192)
T KOG0083|consen 161 KLKMGA-PPEGEFADHDSVADEGKGEIARCC 190 (192)
T ss_pred HhccCC-CCCCccccchhHHhcCCCcccccc
Confidence 644332 223334444444444444445676
No 94
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.98 E-value=1.6e-30 Score=181.10 Aligned_cols=158 Identities=42% Similarity=0.733 Sum_probs=138.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|++|||||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||.+.+...+..++..+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998777667666665 4555667777777899999999999888888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
+++++++..+..|+..+..... .+.|+++++||+|+........+++..++..++.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999998888877654 579999999999998766677888888988888999999999999999999999875
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=9.5e-30 Score=180.81 Aligned_cols=164 Identities=37% Similarity=0.596 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
.||+++|.+|||||||+++|....+...+.++..... ...+..++..+.+.+||+||++.+...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998877666666654333 455667777788999999999998888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|.++..++..+..|+..+.... ..+.|+++++||+|+...+....++...+++.++.+++++|++++.|+.++|++|.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999877776543 356899999999999766666666777788888889999999999999999999999
Q ss_pred HHHHhh
Q 043946 163 DIKNRM 168 (198)
Q Consensus 163 ~~~~~~ 168 (198)
.+....
T Consensus 161 ~~~~~~ 166 (180)
T cd04137 161 EIEKVE 166 (180)
T ss_pred HHHHhc
Confidence 887543
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.3e-29 Score=181.15 Aligned_cols=161 Identities=36% Similarity=0.606 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
.||+|+|++|+|||||+++|..+.+.+.+.++....+ ...+.+++....+.+||++|++.+......++..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999997777666666654333 345667777788999999999888777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC----------CCcCCHHHHHHHHHHhCC-cEEEEeccCCC
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTD----------KKVVSYETAKAFADEIGI-PFMETSAKDSL 151 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 151 (198)
|+++++++..+. .|+..+..... +.|+++|+||+|+.+ .+.+..++...+++..+. .|+++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 58888876544 699999999999854 234456777888888885 89999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTADIKN 166 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~ 166 (198)
|++++|+++.+.+..
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987764
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.8e-30 Score=182.29 Aligned_cols=159 Identities=21% Similarity=0.372 Sum_probs=122.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.++||||||+++|..+.+. .+.++.+.+. ..+...+ +.+.+||+||++.+..+|..+++++|++||
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999876664 4556665443 3344444 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-----IPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 155 (198)
|||+++++++..+..++..+... ...+.|+++++||+|+.+. ...+++.+...... ..++++||++|.|+++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e 168 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 168 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence 99999999988887766555322 2246899999999998654 34444443332221 1356899999999999
Q ss_pred HHHHHHHHHHHh
Q 043946 156 AFMAMTADIKNR 167 (198)
Q Consensus 156 ~~~~l~~~~~~~ 167 (198)
+|+||.+.+.++
T Consensus 169 ~~~~l~~~~~~~ 180 (181)
T PLN00223 169 GLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHhhc
Confidence 999999887753
No 98
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=2.6e-29 Score=177.76 Aligned_cols=159 Identities=34% Similarity=0.648 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
.||+++|++|||||||+++|....+...+.++.+.... ..+.+++..+.+.+||++|++.+...+..++.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 58999999999999999999998887777777664443 45677888889999999999998888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEeccC
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSAKD 149 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~~~ 149 (198)
|+++++++..+. .|...+.... .+.|+++|+||+|+... ..+..++.+++++..+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 4777776543 47899999999998642 12345666777777764 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTADI 164 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~ 164 (198)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 99
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=9.5e-30 Score=181.24 Aligned_cols=164 Identities=23% Similarity=0.409 Sum_probs=128.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQ-DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
.+||+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+||++|.+.+..++..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 58999999999999999999998776543 565555554444443 3355889999999999888899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH--h----CCcEEEEeccCCCCHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE--I----GIPFMETSAKDSLNVE 154 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~----~~~~~~~S~~~~~~i~ 154 (198)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++..+... . +++++++||++|.|++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 999999998888888877665432 246899999999998643 334444444321 1 2458899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 043946 155 QAFMAMTADIKNRMA 169 (198)
Q Consensus 155 ~~~~~l~~~~~~~~~ 169 (198)
++|++|.+.+.+.++
T Consensus 160 ~l~~~l~~~l~~~~~ 174 (183)
T cd04152 160 EGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876444
No 100
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=180.31 Aligned_cols=167 Identities=38% Similarity=0.624 Sum_probs=153.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|+|||+|..++....+.+.+.|+++ +.+.+.+.+++..+.+.|+|++|++.+..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999999999998 5566788888999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
||+++++.||..+..++..+.+... ...|+++|+||+|+...+.++.++...++..++++|+|+||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999988855444 457999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 043946 161 TADIKNRMA 169 (198)
Q Consensus 161 ~~~~~~~~~ 169 (198)
.+.+.....
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 998887333
No 101
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.1e-29 Score=178.68 Aligned_cols=155 Identities=20% Similarity=0.398 Sum_probs=123.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|.++||||||+++|....+. .+.++.+.... .+...+ +.+.+||+||+..+...+..++..+|+++||+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999987654 35566554442 344443 789999999999888889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG------IPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~ 157 (198)
+++++++..+..|+..+.... ..+.|+++|+||+|+.+. +..+++.+++...+ ..++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988887775432 245899999999998643 45666666554322 257899999999999999
Q ss_pred HHHHHHHHH
Q 043946 158 MAMTADIKN 166 (198)
Q Consensus 158 ~~l~~~~~~ 166 (198)
+||.+.+.+
T Consensus 154 ~~l~~~~~~ 162 (169)
T cd04158 154 DWLSRQLVA 162 (169)
T ss_pred HHHHHHHhh
Confidence 999887765
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=6.9e-30 Score=179.54 Aligned_cols=153 Identities=23% Similarity=0.403 Sum_probs=120.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||+++|..+.+. .+.++.+.+.. .+... .+.+.+||++|++.+...+..++..+|++|||
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 579999999999999999999876654 35566654443 33333 48899999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~~ 156 (198)
||++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...+++...+.. ....++++||++|.|++++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~ 161 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG 161 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence 9999999998887776655432 2246899999999998643 355666655432 1236899999999999999
Q ss_pred HHHHHH
Q 043946 157 FMAMTA 162 (198)
Q Consensus 157 ~~~l~~ 162 (198)
|+||.+
T Consensus 162 ~~~l~~ 167 (168)
T cd04149 162 LTWLSS 167 (168)
T ss_pred HHHHhc
Confidence 999864
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=4.7e-29 Score=175.65 Aligned_cols=157 Identities=37% Similarity=0.656 Sum_probs=130.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||++.+......++..+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999887666666654 334455667788899999999999988888888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------cCCHHHHHHHHHHhCC-cEEEEeccCC
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK-----------VVSYETAKAFADEIGI-PFMETSAKDS 150 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~S~~~~ 150 (198)
|++++.++.... .|+..+..... +.|+++|+||+|+.... .+..++..+++..++. +++++|+++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999887664 47776665543 79999999999987544 2346677788888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTA 162 (198)
Q Consensus 151 ~~i~~~~~~l~~ 162 (198)
.|++++|++|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 104
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.9e-29 Score=178.46 Aligned_cols=157 Identities=21% Similarity=0.373 Sum_probs=121.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|..+.+. .+.++.+.+.. .+.... +.+.+||+||++.+..++..++..+|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKN--ISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3689999999999999999999876654 45566654443 344443 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-----CCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-----GIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 155 (198)
|||+++++++.....|+..+... ...+.|+++|+||.|+.+.. ..+++....... .+.++++||++|.|+++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 99999999998888877666432 22468999999999986532 333433322211 23467899999999999
Q ss_pred HHHHHHHHHH
Q 043946 156 AFMAMTADIK 165 (198)
Q Consensus 156 ~~~~l~~~~~ 165 (198)
+|+||.+.+.
T Consensus 165 ~~~~l~~~~~ 174 (175)
T smart00177 165 GLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 105
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=2.1e-30 Score=181.47 Aligned_cols=153 Identities=22% Similarity=0.336 Sum_probs=122.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
.|+++|++|||||||+++|....+...+.++.+... .. ++...+.+.+||++|++.+..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~--i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VA--IPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EE--EeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998877777777776432 22 33445889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCH----HHHHHHHHHhCCcEEEEeccC------CCCHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSY----ETAKAFADEIGIPFMETSAKD------SLNVE 154 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~S~~~------~~~i~ 154 (198)
++++.++..+..|+..+.... .+.|+++|+||.|+...+.+.. ..+..++++.++.++++||++ ++|+.
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999988888877775433 5799999999999976542211 123444555567889998888 99999
Q ss_pred HHHHHHHH
Q 043946 155 QAFMAMTA 162 (198)
Q Consensus 155 ~~~~~l~~ 162 (198)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99998864
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=5.1e-29 Score=177.23 Aligned_cols=159 Identities=24% Similarity=0.397 Sum_probs=121.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|++|||||||++++..+.+.. +.++.+.+.. .+...+ +.+.+||+||++.+..++..+++.+|++|+|
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999998766653 5566554433 344443 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-----CCcEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-----GIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~~ 156 (198)
+|+++++++..+..++..+... ...+.|+++|+||.|+.+.. ..+++....... .+.++++||++|.|++++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~ 169 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG 169 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence 9999999998887766655322 22468999999999986432 333332222111 124678999999999999
Q ss_pred HHHHHHHHHHhh
Q 043946 157 FMAMTADIKNRM 168 (198)
Q Consensus 157 ~~~l~~~~~~~~ 168 (198)
|+||.+.+.+.+
T Consensus 170 ~~~l~~~i~~~~ 181 (182)
T PTZ00133 170 LDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999998887643
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=3.9e-29 Score=174.24 Aligned_cols=152 Identities=22% Similarity=0.380 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||++++..+.+. .+.|+.+.... .+... .+.+.+||+||++.+...+..+++++|++||||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877665 45666654432 33443 488999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~~~ 157 (198)
|++++.++..+..|+..+... ...+.|+++++||+|+.+.. ..+++...... ..+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999998888766655332 22458999999999986432 23333222211 12357899999999999999
Q ss_pred HHHHH
Q 043946 158 MAMTA 162 (198)
Q Consensus 158 ~~l~~ 162 (198)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=6.5e-29 Score=174.34 Aligned_cols=160 Identities=27% Similarity=0.402 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|.+|||||||+++|..+.+...+.++.. .........+..+.+.+||+||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 4899999999999999999999887655433222 22233445566789999999999877777777889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC--HHHHHHHHHHhC--CcEEEEeccCCCCHHHHHH
Q 043946 84 DVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKKVVS--YETAKAFADEIG--IPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 84 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~ 158 (198)
|++++.++..+. .|+..+..... +.|+++|+||+|+.+..... .+++..+...+. .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999875 58887776544 79999999999997654321 233333333333 3799999999999999999
Q ss_pred HHHHHHHH
Q 043946 159 AMTADIKN 166 (198)
Q Consensus 159 ~l~~~~~~ 166 (198)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887653
No 109
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=4.5e-29 Score=176.28 Aligned_cols=154 Identities=25% Similarity=0.395 Sum_probs=121.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|++|||||||+++|.+..+ ..+.++.+ +....+..++ +.+.+||+||++.+...+..++..+|++++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999997644 34455554 3334455554 789999999999888888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~ 155 (198)
|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..+++..+... .+++++++||++|.|+++
T Consensus 88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 165 (173)
T cd04154 88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ 165 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence 99999999998887777666432 23578999999999996543 44555555432 346899999999999999
Q ss_pred HHHHHHH
Q 043946 156 AFMAMTA 162 (198)
Q Consensus 156 ~~~~l~~ 162 (198)
+|+||.+
T Consensus 166 l~~~l~~ 172 (173)
T cd04154 166 GIDWLVD 172 (173)
T ss_pred HHHHHhc
Confidence 9999864
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.1e-28 Score=178.54 Aligned_cols=163 Identities=33% Similarity=0.610 Sum_probs=141.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|++|||||||+++++.+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++..++++++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAII 87 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEE
Confidence 46899999999999999999998888888888998888887888778888999999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++.++..+..|+..+.... .+.|+++++||+|+.+. ....+. ..++...++.++++|+++|.|++++|.+|.
T Consensus 88 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 88 MFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999998887664 46899999999998643 233333 456677788999999999999999999999
Q ss_pred HHHHHh
Q 043946 162 ADIKNR 167 (198)
Q Consensus 162 ~~~~~~ 167 (198)
+.+...
T Consensus 165 ~~l~~~ 170 (215)
T PTZ00132 165 RRLTND 170 (215)
T ss_pred HHHhhc
Confidence 988753
No 111
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=3.8e-29 Score=174.98 Aligned_cols=164 Identities=35% Similarity=0.611 Sum_probs=147.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
+.+|++|+|..++|||+|+-.+..+.++..+.|+.. +.....+.++ +..+.+.+|||+|+++|+.++...+.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 468999999999999999999999999999999998 6666778885 99999999999999999999989999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEe
Q 043946 81 IVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETS 146 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S 146 (198)
++|++.+++|+.++. .|+.++.+++ ++.|+++|++|.|+.++ ..+..++..+++++.|+ .|+++|
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 999999999999875 4999998887 47999999999999742 25678889999999994 899999
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q 043946 147 AKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~~~ 167 (198)
|+++.|+.++|+...+.....
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcc
Confidence 999999999999999998863
No 112
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-30 Score=176.59 Aligned_cols=169 Identities=30% Similarity=0.575 Sum_probs=158.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
|..+|++|+|..++||||+|++++.+-+...+..++++++....+.+.+.++.+.+||++|+++++.+.+.|++.+.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 46799999999999999999999999888899999999998888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+||+.+|+.||+....|++.+..... ++|.++|-||+|+.+...+...+++.++++++..++.+|++...|+.++|.+|
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YL 176 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYL 176 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999987765 69999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
.+.+.+++++
T Consensus 177 aeK~~q~~kq 186 (246)
T KOG4252|consen 177 AEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHH
Confidence 9999887776
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.9e-28 Score=171.06 Aligned_cols=152 Identities=20% Similarity=0.352 Sum_probs=116.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC-CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS-YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+|+++|++|||||||+++|.+.. ....+.++.+... ..+... .+.+.+||+||.+.+..++..++..+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999999999999864 3445566665433 233333 478999999999999889999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRY---ASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 155 (198)
|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..+++..... .....++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 999999888888777766443 22479999999999986532 2333332221 1123589999999999999
Q ss_pred HHHHHHH
Q 043946 156 AFMAMTA 162 (198)
Q Consensus 156 ~~~~l~~ 162 (198)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999864
No 114
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4.5e-28 Score=174.10 Aligned_cols=148 Identities=25% Similarity=0.423 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-----GKTVKLQIWDTAGQERFRTITSSYYRGAHG 78 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 78 (198)
+||+++|.++||||||+++|..+.+.+.+.++.+.+.....+.++ +..+.+.+||++|++.+..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877776666663 466899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCcCCHH----HHHHHH
Q 043946 79 IIIVYDVTDQESFNNVKQWLNEIDRYA-------------------SENVNKLLVGNKCDLTDKKVVSYE----TAKAFA 135 (198)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~iiv~nK~D~~~~~~~~~~----~~~~~~ 135 (198)
+|+|||++++.++..+..|+..+.... ..+.|+++|+||.|+.+.+.+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999886532 246899999999999765544443 244578
Q ss_pred HHhCCcEEEEeccCCC
Q 043946 136 DEIGIPFMETSAKDSL 151 (198)
Q Consensus 136 ~~~~~~~~~~S~~~~~ 151 (198)
.+.+++.++.+..++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 8899998888877554
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=8.2e-29 Score=173.96 Aligned_cols=151 Identities=23% Similarity=0.325 Sum_probs=118.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
+|+++|++|||||||+++|.+. +...+.++.+.. ...+...+ +.+.+||+||++.+..++..++.++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 555666776643 34455554 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHH------HHHHhC--CcEEEEeccCC-----
Q 043946 85 VTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKA------FADEIG--IPFMETSAKDS----- 150 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~------~~~~~~--~~~~~~S~~~~----- 150 (198)
++++.++..+..|+..+..... .+.|+++|+||.|+.+.. ...++.+ +++..+ ..++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL--LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC--CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999988888877755422 478999999999997644 2222222 222222 46788999998
Q ss_pred -CCHHHHHHHHHH
Q 043946 151 -LNVEQAFMAMTA 162 (198)
Q Consensus 151 -~~i~~~~~~l~~ 162 (198)
.|+.+.|+||..
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999964
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=1.3e-27 Score=168.88 Aligned_cols=156 Identities=33% Similarity=0.509 Sum_probs=123.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|++||||||++++|..+... ...||.+ .....+...+ +.+.+||.+|+..+...|..++..+|++||
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence 5689999999999999999999876543 3455554 4455666666 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh------CCcEEEEeccCCCCHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI------GIPFMETSAKDSLNVE 154 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~~S~~~~~~i~ 154 (198)
|+|.++.+.+.+....+..+.. ....+.|++|++||.|+.+. ...+++....... .+.++.+|+.+|.|+.
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~ 165 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD 165 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence 9999998888777665555433 23357999999999998653 4556666544322 2458999999999999
Q ss_pred HHHHHHHHHH
Q 043946 155 QAFMAMTADI 164 (198)
Q Consensus 155 ~~~~~l~~~~ 164 (198)
|.|+||.+.+
T Consensus 166 e~l~WL~~~~ 175 (175)
T PF00025_consen 166 EGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=5.8e-28 Score=170.75 Aligned_cols=153 Identities=20% Similarity=0.329 Sum_probs=117.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|++|+|||||+++|..+.+.. ..++.+.+. ..+..+. ..+.+||+||++.+...+..++..+|++|+|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999998877654 455555443 3444444 7899999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFA-----DEIGIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~ 156 (198)
+|+++++++.....++..+... ...+.|+++++||+|+.+. ...+++.+.. ...+++++++||++|.|++++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~ 167 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG 167 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence 9999998887776665555332 2246899999999998653 2334433222 123356899999999999999
Q ss_pred HHHHHH
Q 043946 157 FMAMTA 162 (198)
Q Consensus 157 ~~~l~~ 162 (198)
|+||.+
T Consensus 168 ~~~l~~ 173 (174)
T cd04153 168 LDWIAS 173 (174)
T ss_pred HHHHhc
Confidence 999864
No 118
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=2.8e-27 Score=167.02 Aligned_cols=145 Identities=42% Similarity=0.661 Sum_probs=128.9
Q ss_pred CCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhc
Q 043946 26 DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA 105 (198)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 105 (198)
+.+.+.+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++++|..+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35667788999988888888899999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhhc
Q 043946 106 SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 106 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~ 170 (198)
..+.|+++|+||+|+.+.+.+..++...++..++..++++||++|.|++++|++|.+.+.+....
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 56789999999999977666778888888888888999999999999999999999998764443
No 119
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=2e-27 Score=158.52 Aligned_cols=160 Identities=26% Similarity=0.434 Sum_probs=128.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
|+.++|+++|..||||||+.++|.+... +...|+.+ +..++...++ +.+.+||.+|+......|++|+..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 5689999999999999999999997653 34445554 5555665666 89999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHH-HHHhcCCCCcEEEEEeCCCCCCCCcCCHH------HHHHHHHHhCCcEEEEeccCCCCH
Q 043946 81 IVYDVTDQESFNNVKQWLNE-IDRYASENVNKLLVGNKCDLTDKKVVSYE------TAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~-~~~~~~~~~p~iiv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
||+|.+|+..++.....+.. +...+..+.|+++++||.|++.. ...+ .++++++....+++.||+.+|+++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999998887766554433 33444467899999999999732 2222 344555667789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043946 154 EQAFMAMTADIKNR 167 (198)
Q Consensus 154 ~~~~~~l~~~~~~~ 167 (198)
.+.++||...++++
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999874
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1.2e-27 Score=171.39 Aligned_cols=155 Identities=25% Similarity=0.339 Sum_probs=122.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+++|++|||||||+++|.+..+. .+.++.+.. ...+.+++ ..+.+||+||+..+...+..++..+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999987663 455554433 34455555 678999999999888888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH----------------hCCcEEE
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE----------------IGIPFME 144 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 144 (198)
|+|+++..++.....++..+.... ..+.|+++++||+|+.. .+..+++...... ....+++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM 170 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence 999999988887777776665432 24689999999999864 3456666665542 1246899
Q ss_pred EeccCCCCHHHHHHHHHHH
Q 043946 145 TSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 145 ~S~~~~~~i~~~~~~l~~~ 163 (198)
+||++|.|++++|+||.+.
T Consensus 171 ~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 171 CSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEecCCCChHHHHHHHHhh
Confidence 9999999999999999764
No 121
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=6.5e-28 Score=169.29 Aligned_cols=152 Identities=29% Similarity=0.443 Sum_probs=116.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSY------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHG 78 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 78 (198)
+|+++|++|||||||+++|..... ...+.++.+... ..+.+++ ..+.+||+||++.+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999975322 223334444333 3444554 789999999999998888999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-------hCCcEEEEeccCC
Q 043946 79 IIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-------IGIPFMETSAKDS 150 (198)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~S~~~~ 150 (198)
+++|+|+++++++.....|+..+.... ..+.|+++++||+|+... ...+++..+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888877776665432 247899999999998653 344555444433 2357999999999
Q ss_pred CCHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTA 162 (198)
Q Consensus 151 ~~i~~~~~~l~~ 162 (198)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=6.8e-28 Score=168.04 Aligned_cols=152 Identities=25% Similarity=0.420 Sum_probs=115.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
+|+++|++|||||||+++|....+.. ..++.+.+. ..+..+ ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887653 345554333 333333 34789999999999888888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHH------HHhCCcEEEEeccCCCCHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFA------DEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..+++.... ...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988888877776664432 2478999999999986432 233333222 1123468999999999999999
Q ss_pred HHHHH
Q 043946 158 MAMTA 162 (198)
Q Consensus 158 ~~l~~ 162 (198)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=4.2e-27 Score=163.83 Aligned_cols=151 Identities=25% Similarity=0.375 Sum_probs=112.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|+++||||||+++|..+.+. ...++.+.+. ..+... ...+.+||+||.+.+..++..++..+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 6899999999999999999876654 3345544333 233343 3789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~~~~ 158 (198)
++++.++.....++..+ ......+.|+++++||+|+.+.. ...++...... .+.+++++||++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99988877665555433 32223468999999999986542 22333222211 124699999999999999999
Q ss_pred HHHH
Q 043946 159 AMTA 162 (198)
Q Consensus 159 ~l~~ 162 (198)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9865
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.7e-27 Score=165.81 Aligned_cols=151 Identities=26% Similarity=0.399 Sum_probs=118.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
||+++|.+|||||||++++.+... ..+.++.+.+ ...+...+ ..+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998763 3445555433 33444444 789999999999988889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~~~~ 158 (198)
+++++++.....|+..+.... ..+.|+++++||+|+.... ..+++...... ..++++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999888888776665432 3578999999999987543 33344433322 235799999999999999999
Q ss_pred HHHH
Q 043946 159 AMTA 162 (198)
Q Consensus 159 ~l~~ 162 (198)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 125
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=2.5e-26 Score=172.87 Aligned_cols=178 Identities=23% Similarity=0.455 Sum_probs=137.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC-------------eEEEEEEEeCCCccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG-------------KTVKLQIWDTAGQERFRTI 68 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~~~~~~ 68 (198)
..+||+|+|..|||||||+++|..+.+...+.++++.++....+.+++ ..+.+.|||++|++.+..+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 468999999999999999999999888888888988887767666642 4588999999999999999
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC---c---CCHHH
Q 043946 69 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------------ENVNKLLVGNKCDLTDKK---V---VSYET 130 (198)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~D~~~~~---~---~~~~~ 130 (198)
+..+++++|++|+|||++++.++..+..|+..+..... .++|++||+||+|+.+.+ . +..++
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~ 179 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA 179 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence 99999999999999999999999999999999987631 258999999999996542 2 25788
Q ss_pred HHHHHHHhCC-cE---E------------EEeccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCC
Q 043946 131 AKAFADEIGI-PF---M------------ETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARP 179 (198)
Q Consensus 131 ~~~~~~~~~~-~~---~------------~~S~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 179 (198)
++++++++++ +. + ...|+.+.==.|++....+.+.+++--......+.+
T Consensus 180 a~~~A~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (334)
T PLN00023 180 ARQWVEKQGLLPSSEELPLTESFPGNGGLIAAAKEARYDKEALIKFFRMLIRRRYFSDELPAPSP 244 (334)
T ss_pred HHHHHHHcCCCccccccccccccCCCccHhhhhhhhcccHHHHHHHHHHHHHHHhhcccCCCCCC
Confidence 9999999884 11 1 122333332345666666666666655444444333
No 126
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=1e-26 Score=163.40 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=107.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc---------ccccccC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI---------TSSYYRG 75 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~~ 75 (198)
+|+++|.+|||||||+++|.+........+..+.+.....+..+ .+++.+|||||....... .......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 79999999999999999999876543322222223333333333 378999999997431110 0011123
Q ss_pred ccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 76 AHGIIIVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
.|++++|+|++++.+ +.....|+..+.... .+.|+++|+||+|+.+..... ....+....+.+++++||++|.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence 689999999998754 355566777765543 368999999999996543322 244455555678999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 154 EQAFMAMTADI 164 (198)
Q Consensus 154 ~~~~~~l~~~~ 164 (198)
+++|++|.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=1.2e-26 Score=165.36 Aligned_cols=154 Identities=20% Similarity=0.275 Sum_probs=118.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.++|+++|.+|||||||+++|.+..+. .+.++.+.+ ...+..++ +++.+||+||...+...+..++..+|++|+|
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPT--SEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999987654 234444332 23344444 7899999999998888899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh------------CCcEEEEeccC
Q 043946 83 YDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI------------GIPFMETSAKD 149 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~------------~~~~~~~S~~~ 149 (198)
+|+++++++.....++..+... ...+.|+++|+||+|+.. .++.+++.+..... ...++++||++
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~ 169 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR 169 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence 9999998888777776655432 224689999999999864 34556555443211 23589999999
Q ss_pred CCCHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTAD 163 (198)
Q Consensus 150 ~~~i~~~~~~l~~~ 163 (198)
|.|++++++||.+.
T Consensus 170 ~~g~~~~~~wl~~~ 183 (184)
T smart00178 170 RMGYGEGFKWLSQY 183 (184)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=2.9e-26 Score=162.66 Aligned_cols=154 Identities=23% Similarity=0.333 Sum_probs=111.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--C-----CCCCccc------ceeeeEEEE--EEE---CCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS--Y-----LDSYIST------IGVDFKIRT--VEQ---DGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~-----~~~~~~~------~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~~~ 66 (198)
+|+++|.++||||||+++|++.. + ...+.++ .+.+..... +.+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998632 1 1111111 122222222 222 5566889999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC---cEE
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI---PFM 143 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 143 (198)
..+..++..+|++|+|+|++++.+...+..|.... ..++|+++|+||+|+.+.. ..+...++++.+++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88889999999999999999876655555554322 2368999999999986432 22334455666665 389
Q ss_pred EEeccCCCCHHHHHHHHHHHH
Q 043946 144 ETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 144 ~~S~~~~~~i~~~~~~l~~~~ 164 (198)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 129
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=5.8e-26 Score=174.34 Aligned_cols=162 Identities=18% Similarity=0.176 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-------FRTITSSYYRGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 76 (198)
-.|+++|.||||||||+++|..........+.++.....-.+.+.. ...+.+||+||... ....+...++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3689999999999999999987543222233334444444455532 14689999999632 122334456789
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
+++++|+|+++.+++..+..|...+..+.. .+.|+++|+||+|+.+......+....++...+.+++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988788888999988877643 368999999999997554333334445555667899999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 155 QAFMAMTADIKN 166 (198)
Q Consensus 155 ~~~~~l~~~~~~ 166 (198)
+++++|.+.+.+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=2.4e-26 Score=161.73 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=111.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc----cccccc---cccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF----RTITSS---YYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~d 77 (198)
+|+++|.+|||||||+++|.+........+..+.......+..++. ..+.+|||||.... ..+... .+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999875432111122222222223333432 47999999996321 122222 345699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-hCCcEEEEeccCCCCH
Q 043946 78 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSLNV 153 (198)
Q Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i 153 (198)
++++|+|++++ +++..+..|.+.+..... .+.|+++|+||+|+...... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888889888876542 36899999999998654432 3444445555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 043946 154 EQAFMAMTAD 163 (198)
Q Consensus 154 ~~~~~~l~~~ 163 (198)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 131
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=7.9e-26 Score=156.90 Aligned_cols=152 Identities=26% Similarity=0.451 Sum_probs=118.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
.|+++|++|||||||+++|.+..+...+.++.+.... .+..++ +.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3799999999999999999998888777777765443 344444 789999999999998889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHHHHH
Q 043946 85 VTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFA-----DEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
++++.++.....|+..+... ...+.|+++|+||+|+.+.. ..++..... ....++++++|+++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 99988887777766655432 22468999999999986543 222222221 11235789999999999999999
Q ss_pred HHHH
Q 043946 159 AMTA 162 (198)
Q Consensus 159 ~l~~ 162 (198)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=3e-25 Score=153.71 Aligned_cols=158 Identities=34% Similarity=0.526 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|+|||||++++........+.++.+.+.....+..++..+.+.+||+||+..+...+..++..++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998877777777777777777677777668899999999988888888888999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 83 YDVTDQ-ESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 83 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|.... .++.... .|...+......+.|+++++||+|+.... ........+......+++++||.++.|++++|++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998876 5555544 56665655544378999999999996543 22233333333345689999999999999999987
Q ss_pred H
Q 043946 161 T 161 (198)
Q Consensus 161 ~ 161 (198)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 4
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=6.2e-26 Score=164.30 Aligned_cols=155 Identities=19% Similarity=0.154 Sum_probs=112.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF---------RTITSSY 72 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~ 72 (198)
..++|+|+|++|||||||++++.+........+..+.+.....+.+++. ..+.+||+||.... ... ...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LEE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HHH
Confidence 3579999999999999999999987543332233333344444445442 37899999997321 111 123
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCC
Q 043946 73 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLN 152 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 152 (198)
+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.... .......+.+++++||+++.|
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~g 192 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCC
Confidence 568999999999999888877777777776665557899999999998654321 133444567899999999999
Q ss_pred HHHHHHHHHHH
Q 043946 153 VEQAFMAMTAD 163 (198)
Q Consensus 153 i~~~~~~l~~~ 163 (198)
+++++++|.+.
T Consensus 193 i~~l~~~L~~~ 203 (204)
T cd01878 193 LDELLEAIEEL 203 (204)
T ss_pred HHHHHHHHHhh
Confidence 99999999765
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=1.6e-25 Score=156.51 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD---SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
+.|+++|.+|||||||+++|.+. .+.....++.+.+.....+.+.. ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 46899999999999999999863 23223333444444444455542 268999999999888766667788999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--CCHHHHHHHHHH---hCCcEEEEeccCCCC
Q 043946 81 IVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV--VSYETAKAFADE---IGIPFMETSAKDSLN 152 (198)
Q Consensus 81 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~S~~~~~~ 152 (198)
+|+|+++ +++...+ ..+... . ..|+++++||+|+.+... ...+++.+.... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3332222 222222 1 249999999999965321 112344444444 357899999999999
Q ss_pred HHHHHHHHHH
Q 043946 153 VEQAFMAMTA 162 (198)
Q Consensus 153 i~~~~~~l~~ 162 (198)
++++|++|.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=8.7e-25 Score=154.28 Aligned_cols=151 Identities=25% Similarity=0.383 Sum_probs=113.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+++|++|||||||++++.+..+. ...++.+. ....+...+ ..+.+||++|...+...+..+++.+|++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~--~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGF--NIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 3589999999999999999999986543 33444443 333445555 678999999998888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC--------cEEEEeccCCCC
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI--------PFMETSAKDSLN 152 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~S~~~~~~ 152 (198)
|+|+++..++.....++..+... ...++|+++++||+|+.+.. ..+++. ...++ .++++||++|.|
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~---~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIA---EALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHH---HHcCCcccCCCeEEEEEeECCCCCC
Confidence 99999988887776665554332 23468999999999986532 223322 22332 368999999999
Q ss_pred HHHHHHHHHH
Q 043946 153 VEQAFMAMTA 162 (198)
Q Consensus 153 i~~~~~~l~~ 162 (198)
++++|+||.+
T Consensus 163 i~~~~~~l~~ 172 (173)
T cd04155 163 LQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999965
No 136
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=7.5e-25 Score=152.22 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=110.3
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cCccEE
Q 043946 8 LIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT------ITSSYY--RGAHGI 79 (198)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~ 79 (198)
|+|.+|||||||++++.+........++.+.+.....+.+++ ..+.+|||||.+.+.. ++..++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998765444455555556566677776 5789999999876543 244455 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 80 IIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
++|+|+.++... ..+...+.. .++|+++|+||+|+.+...+. .....+....+.+++++|++++.|+++++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999886542 233333332 368999999999997654333 3345677777899999999999999999999
Q ss_pred HHHH
Q 043946 160 MTAD 163 (198)
Q Consensus 160 l~~~ 163 (198)
|.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 9875
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=1.8e-25 Score=152.86 Aligned_cols=134 Identities=25% Similarity=0.306 Sum_probs=98.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE-----RFRTITSSYYRGAHGI 79 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~ 79 (198)
||+++|.+|||||||+++|.+.... +.++.+ +.+. -.+||+||.. .+..+. ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 8999999999999999999976542 222222 1122 2689999972 233332 247899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHH
Q 043946 80 IIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~ 158 (198)
|+|||++++.++.. ..|...+ ..|+++|+||+|+.+. ....++..++++..+. +++++||++|.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887644 2343321 2499999999998643 3456677777777776 799999999999999999
Q ss_pred HHH
Q 043946 159 AMT 161 (198)
Q Consensus 159 ~l~ 161 (198)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.4e-25 Score=150.16 Aligned_cols=157 Identities=24% Similarity=0.432 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.++|+++|..+|||||++.+|...+.... .||++ +.+..+.+.+ +.+.+||.+|++.+...|..|+++.+++|||
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcc--eEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 47999999999999999999987776544 77776 4445555555 8999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-----cEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-----PFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~S~~~~~~i~~~ 156 (198)
+|.+|++.+..+...+..+..... .+.|+++++||.|+++. .+..++........+ .+..++|.+|.|+.|.
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg 169 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG 169 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence 999999998887765555544333 57999999999999765 345555544443332 4678899999999999
Q ss_pred HHHHHHHHHH
Q 043946 157 FMAMTADIKN 166 (198)
Q Consensus 157 ~~~l~~~~~~ 166 (198)
++||.+.+..
T Consensus 170 l~wl~~~~~~ 179 (181)
T KOG0070|consen 170 LDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 139
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=1.2e-25 Score=153.65 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc------ccccccc--cC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR------TITSSYY--RG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~ 75 (198)
|+|+++|.||||||||+|+|.+.+......|..+.+.....+...+ ..+.++|+||..+.. .....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999876556667777777777777777 678999999954322 1223333 68
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 155 (198)
.|++|+|+|+++.+.-.++ ..++.+ .++|+++++||+|......+. -..+.+.+.++++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~l---~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLYL---TLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHHH---HHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHHH---HHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 9999999999875433222 222333 279999999999986544332 235667778899999999999999999
Q ss_pred HHHHH
Q 043946 156 AFMAM 160 (198)
Q Consensus 156 ~~~~l 160 (198)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 140
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.93 E-value=9.1e-25 Score=153.33 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
.|+|+|.+|+|||||+++|....+.....++.+.+.....+... +....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999877655444444434433444443 12468999999999888888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC-HHHHHHHHH----Hh--CCcEEEEeccCCCCHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS-YETAKAFAD----EI--GIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~----~~--~~~~~~~S~~~~~~i~~~ 156 (198)
|+++........ .+..+.. .+.|+++|+||+|+....... .+....+.. .. ..+++++|+++|.|++++
T Consensus 82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 998743211111 1222222 368999999999986432100 111211111 11 257999999999999999
Q ss_pred HHHHHHHHH
Q 043946 157 FMAMTADIK 165 (198)
Q Consensus 157 ~~~l~~~~~ 165 (198)
+++|.+...
T Consensus 158 ~~~l~~~~~ 166 (168)
T cd01887 158 LEAILLLAE 166 (168)
T ss_pred HHHHHHhhh
Confidence 999987654
No 141
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=8e-24 Score=154.81 Aligned_cols=167 Identities=40% Similarity=0.624 Sum_probs=136.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|+.|||||||+++|....+...+.++.+..+........+..+++.+||++|++.+..++..++..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999988888888777777776666578999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------cCCHHHHHHHHHHh---CCcEEEEe
Q 043946 83 YDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEI---GIPFMETS 146 (198)
Q Consensus 83 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~S 146 (198)
+|..+ ..+......|...+......+.|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5556666789988888776678999999999997653 22222222222222 23489999
Q ss_pred cc--CCCCHHHHHHHHHHHHHHhhh
Q 043946 147 AK--DSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 147 ~~--~~~~i~~~~~~l~~~~~~~~~ 169 (198)
++ ++.++.++|..+.+.+.+...
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhh
Confidence 99 999999999999999975443
No 142
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=4.8e-24 Score=146.43 Aligned_cols=153 Identities=55% Similarity=0.901 Sum_probs=120.2
Q ss_pred EEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 043946 8 LIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
|+|++|+|||||++++.+... .....++. .+.....+...+....+.+||+||...+...+..++..+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998766 44444554 6666677776677789999999998888777788899999999999999
Q ss_pred ChhhHHHHHHH-HHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHH-HHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 87 DQESFNNVKQW-LNEIDRYASENVNKLLVGNKCDLTDKKVVSYET-AKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 87 ~~~s~~~~~~~-~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
++.++..+..| ..........+.|+++++||+|+.......... ..........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99888888776 233334445679999999999987654332222 3344555568999999999999999999985
No 143
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=2.7e-24 Score=165.04 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=114.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-------FRTITSSYYRGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 76 (198)
-.|+++|.||||||||+++|...+......+.++.....-.+.+.+ ...+.+||+||... ....+...+.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999997543222222233333334444443 26789999999642 112223345679
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCC
Q 043946 77 HGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSL 151 (198)
Q Consensus 77 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 151 (198)
+++++|+|+++. +++..+..|.+++..+.. .+.|+++|+||+|+.+... ..+..+.+.+..+.+++++||+++.
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~ 315 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE 315 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence 999999999986 677888888888766532 4689999999999965432 2334445566667889999999999
Q ss_pred CHHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTADI 164 (198)
Q Consensus 152 ~i~~~~~~l~~~~ 164 (198)
|+++++++|.+.+
T Consensus 316 GI~eL~~~I~~~l 328 (329)
T TIGR02729 316 GLDELLYALAELL 328 (329)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998754
No 144
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.1e-24 Score=173.77 Aligned_cols=179 Identities=21% Similarity=0.231 Sum_probs=124.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--------FRTITSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 73 (198)
..+|+|+|.+|||||||+|+|++.... ....++.+.+.....+.+.+ ..+.+|||||.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 468999999999999999999986532 23344444445555555666 5688999999752 233345578
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCC
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLN 152 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 152 (198)
..+|++|||+|++++.+... ..+...+.. .+.|+++|+||+|+.... .+..+.+ ..++ ..+++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCC
Confidence 89999999999998755432 334444433 368999999999985421 1222222 2343 457999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 153 VEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
++++|++|.+.+.+.... .........+.+-++++.+|++
T Consensus 187 i~eL~~~i~~~l~~~~~~--~~~~~~~~kI~iiG~~nvGKSS 226 (472)
T PRK03003 187 VGDLLDAVLAALPEVPRV--GSASGGPRRVALVGKPNVGKSS 226 (472)
T ss_pred cHHHHHHHHhhccccccc--ccccccceEEEEECCCCCCHHH
Confidence 999999999887552211 1112356788899999999986
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=4.2e-24 Score=165.28 Aligned_cols=153 Identities=22% Similarity=0.222 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc-c--------ccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE-R--------FRTITSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~--------~~~~~~~~~ 73 (198)
.++|+++|.+|||||||+|+|.+........+..+.+.....+.+++. ..+.+|||+|.. . +.. ....+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHHH
Confidence 479999999999999999999987644333344445555666666432 578999999972 1 211 12247
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
.++|++++|+|++++.+...+..|...+......+.|+++|+||+|+.... ...... ....+++++||++|.|+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~~-~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERLE-EGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHHH-hCCCCEEEEEccCCCCH
Confidence 789999999999998887777777777766654578999999999986432 122111 12246899999999999
Q ss_pred HHHHHHHHHH
Q 043946 154 EQAFMAMTAD 163 (198)
Q Consensus 154 ~~~~~~l~~~ 163 (198)
++++++|.+.
T Consensus 341 ~eL~~~I~~~ 350 (351)
T TIGR03156 341 DLLLEAIAER 350 (351)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 146
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=9e-25 Score=157.87 Aligned_cols=154 Identities=16% Similarity=0.188 Sum_probs=102.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCc-----------cccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ-----------ERFRTITS 70 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-----------~~~~~~~~ 70 (198)
..++|+++|.+|||||||+++|.+..+.....++.+ .....+... .+.+||+||. +.+...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 357999999999999999999998766544444433 333333333 5899999993 34444444
Q ss_pred ccc----cCccEEEEEEECCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH
Q 043946 71 SYY----RGAHGIIIVYDVTDQESF-N---------NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFAD 136 (198)
Q Consensus 71 ~~~----~~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 136 (198)
.++ ..++++++|+|..+...+ . .-......+ ...++|+++|+||+|+.+.. .+...++..
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~ 155 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL---RELGIPPIVAVNKMDKIKNR---DEVLDEIAE 155 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH---HHcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence 443 346788999998653211 0 001112222 22478999999999986543 334455555
Q ss_pred HhCC---------cEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 043946 137 EIGI---------PFMETSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 137 ~~~~---------~~~~~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
.+++ +++++||++| |++++|++|.+.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 5554 4899999999 99999999998875433
No 147
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=3.2e-24 Score=154.12 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------cccceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD--DSYLDSY------------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITS 70 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 70 (198)
+|+++|.+++|||||+++|+. ..+...+ ..+.+.+.......+......+.+||+||++.+...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 799999999999999999986 4443332 11223333333333444457899999999999988899
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-CHHHHHHHHHH-------hCCcE
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-SYETAKAFADE-------IGIPF 142 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~~~ 142 (198)
.++..+|++++|+|+++.. ......++..+. ..+.|+++++||+|+.+.... ..+++..+... .++++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL---ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV 159 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH---HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence 9999999999999998742 222233333332 236899999999999653211 12334444322 35789
Q ss_pred EEEeccCCCCHHHH------HHHHHHHHHH
Q 043946 143 METSAKDSLNVEQA------FMAMTADIKN 166 (198)
Q Consensus 143 ~~~S~~~~~~i~~~------~~~l~~~~~~ 166 (198)
+++||++|.|+.++ +++|.+.+.+
T Consensus 160 v~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~ 189 (194)
T cd01891 160 LYASAKNGWASLNLEDPSEDLEPLFDTIIE 189 (194)
T ss_pred EEeehhccccccccccchhhHHHHHHHHHh
Confidence 99999999887554 4555555554
No 148
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=2.6e-24 Score=152.08 Aligned_cols=154 Identities=23% Similarity=0.258 Sum_probs=106.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccc----ccc---ccccccCccEE
Q 043946 8 LIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERF----RTI---TSSYYRGAHGI 79 (198)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~d~~ 79 (198)
++|++|||||||+++|.+........+..+.+.....+.+. + ..+.+||+||.... ..+ ....+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999999999999875421222222233333344444 4 67899999996321 112 23356789999
Q ss_pred EEEEECCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEe
Q 043946 80 IIVYDVTDQ------ESFNNVKQWLNEIDRYAS-------ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 80 i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (198)
++|+|+.++ .++..+..|...+..... .+.|+++|+||+|+..................+..++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 467777777766654432 3689999999999975443222212233334456899999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 043946 147 AKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~ 163 (198)
++++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=2.5e-23 Score=144.19 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TSSYYR 74 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 74 (198)
++|+++|++|+|||||++++.+.... ....++.+.......+...+ ..+.+||+||....... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999976532 12233333344444555554 67899999997654321 234667
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
++|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998776555444332 236899999999998754432 333445689999999999999
Q ss_pred HHHHHHHHHH
Q 043946 155 QAFMAMTADI 164 (198)
Q Consensus 155 ~~~~~l~~~~ 164 (198)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2.9e-24 Score=172.91 Aligned_cols=162 Identities=21% Similarity=0.204 Sum_probs=112.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE----------RFRTIT- 69 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 69 (198)
..++|+++|.+|||||||+|+|++... .....++.+.+.....+..++ ..+.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHH
Confidence 358999999999999999999998654 234445555556556666776 456899999953 222221
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHH-HHHhCCcEEEEe
Q 043946 70 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAF-ADEIGIPFMETS 146 (198)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~-~~~~~~~~~~~S 146 (198)
..+++.+|++|+|+|++++.++..+. ++..+. ..+.|+++|+||+|+.+.... ..+++... .....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~---~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI---EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH---HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 23578999999999999987766553 333332 247899999999999643211 01122221 112236899999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhh
Q 043946 147 AKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
|++|.|++++|+.+.+.+.+...
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 364 AKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999887764443
No 151
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=1.3e-23 Score=158.16 Aligned_cols=153 Identities=18% Similarity=0.112 Sum_probs=103.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc--------ccccccccC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR--------TITSSYYRG 75 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 75 (198)
+|+++|.+|||||||+|+|++..... ...+.++.... ..+...+. .++.+|||||..... .....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999876532 12222222222 22322222 579999999965321 112346789
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHH
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVE 154 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 154 (198)
+|++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999866543 333443433 3689999999999864321 12334444444444 78999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 155 QAFMAMTADIK 165 (198)
Q Consensus 155 ~~~~~l~~~~~ 165 (198)
+++++|.+.+.
T Consensus 154 ~L~~~l~~~l~ 164 (270)
T TIGR00436 154 FLAAFIEVHLP 164 (270)
T ss_pred HHHHHHHHhCC
Confidence 99999988764
No 152
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=3.7e-23 Score=164.64 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=114.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-------FRTITSSYYRGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 76 (198)
..|+|+|.||||||||+++|.+.+......+.++.....-.+...+ ..+.+||+||... ........+.++
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 4799999999999999999997544322334444445555555555 6799999999531 111123356789
Q ss_pred cEEEEEEECCC----hhhHHHHHHHHHHHHHhc-----------CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc
Q 043946 77 HGIIIVYDVTD----QESFNNVKQWLNEIDRYA-----------SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP 141 (198)
Q Consensus 77 d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~-----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 141 (198)
|++|+|+|+++ ++++..+..+...+..+. ..+.|+++|+||+|+++.... .+.........+.+
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~ 316 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP 316 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence 99999999975 345555666665555443 136899999999999754322 23333344455789
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHhhh
Q 043946 142 FMETSAKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 142 ~~~~S~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
++++||+++.|+++++++|.+.+.+.+.
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999877544
No 153
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=3.1e-23 Score=169.31 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=114.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+..+|+++|++++|||||+++|....+.....++.+.+.....+.+.+. ..+.+|||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4578999999999999999999987776665566666666666666442 278999999999999999889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC---------CcEEEEeccCCCC
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG---------IPFMETSAKDSLN 152 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~~ 152 (198)
|+|+++........ .+......++|+++++||+|+.+. ..+.+...+...+ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e----~i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIE----AISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHH----HHHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 99998743212111 122222347899999999998643 2344444333322 4689999999999
Q ss_pred HHHHHHHHHH
Q 043946 153 VEQAFMAMTA 162 (198)
Q Consensus 153 i~~~~~~l~~ 162 (198)
++++|++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
No 154
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=8.3e-23 Score=160.68 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=114.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER----FRTI---TSSYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~d 77 (198)
.|+++|.||||||||+++|.+.+..-...+.++.....-.+.+.. ...+.+||+||... ...+ +...+.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 799999999999999999997553222223333333333344431 25799999999632 1112 233456799
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCC
Q 043946 78 GIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLN 152 (198)
Q Consensus 78 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 152 (198)
++++|+|+++. +++..+..|.+.+..+.. .++|++||+||+|+.. ..+.+..+.+.++.+++++||+++.|
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 99999999864 677777888888876543 3689999999999843 23445566666667899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 043946 153 VEQAFMAMTADIKNRM 168 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~ 168 (198)
+++++++|.+.+.+..
T Consensus 315 I~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 315 LDELLYAVAELLEETP 330 (424)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999998886643
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=5.5e-23 Score=163.31 Aligned_cols=153 Identities=24% Similarity=0.268 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TSSY 72 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 72 (198)
..++|+++|++|||||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 357999999999999999999997542 223345555666666777777 56799999997654321 2357
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCC
Q 043946 73 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLN 152 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 152 (198)
+..+|++++|+|++++.++... |+..+. ..+.|+++|+||+|+... ....+++.++.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988776554 554442 236899999999998543 12344556678899999998 69
Q ss_pred HHHHHHHHHHHHHHhh
Q 043946 153 VEQAFMAMTADIKNRM 168 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~ 168 (198)
++++|+.|.+.+.+..
T Consensus 348 I~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 348 IKALVDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 156
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=3e-23 Score=137.71 Aligned_cols=114 Identities=34% Similarity=0.618 Sum_probs=87.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYL--DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
||+|+|++|||||||+++|.+.... .......+.+..............+.+||++|.+.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999987765 22233344455555666777777799999999998888777789999999999
Q ss_pred EECCChhhHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 043946 83 YDVTDQESFNNVKQW---LNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~iiv~nK~D 119 (198)
||++++.++..+.++ +..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999887555 4444443 34599999999998
No 157
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.9e-23 Score=134.22 Aligned_cols=156 Identities=24% Similarity=0.448 Sum_probs=123.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.++|+.+|..++||||++..|..++.. ...||.+ +...++.+.+ .++.+||.+|++..+.+|.+|+....++|||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 579999999999999999999876543 5556655 5556666666 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-----cEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-----PFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-----~~~~~S~~~~~~i~~~ 156 (198)
+|..+.+.++++...+ ..+....-.+.|++|.+||.|++.. .+.+++..+.+.-.+ -+.++++.+|.|+.|-
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg 169 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG 169 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence 9999987777665533 3332222246899999999999765 467777766554333 3789999999999999
Q ss_pred HHHHHHHHH
Q 043946 157 FMAMTADIK 165 (198)
Q Consensus 157 ~~~l~~~~~ 165 (198)
|.||.+.+.
T Consensus 170 lswlsnn~~ 178 (180)
T KOG0071|consen 170 LSWLSNNLK 178 (180)
T ss_pred HHHHHhhcc
Confidence 999988754
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=6.1e-23 Score=146.58 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----------------cceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYIS----------------TIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI 68 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (198)
+|+|+|.+|+|||||+++|.+......... +.+.......+...+ ..+.+||+||...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 589999999999999999987655433211 112222233333343 68999999999888888
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHHHHH---------
Q 043946 69 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAFADE--------- 137 (198)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~--------- 137 (198)
+..++..+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+...... ..+.+.+..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8888999999999999987654322 233333332 47899999999999753221 12233333333
Q ss_pred -----hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 138 -----IGIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 138 -----~~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
...+++++|+++|.|+++++++|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246899999999999999999998875
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=2.6e-23 Score=149.22 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC----CCCC---CCcccceeeeEEEEEEEC------------CeEEEEEEEeCCCccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD----SYLD---SYISTIGVDFKIRTVEQD------------GKTVKLQIWDTAGQER 64 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~----~~~~---~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~g~~~ 64 (198)
++|+++|.+++|||||+++|... .+.. ...++.+.......+.+. +....+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999862 1111 112223333333333333 2347899999999876
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHHHH------
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAFAD------ 136 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~------ 136 (198)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+...... ..+++.+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443444567789999999998754332222222 1121 25799999999998643211 1222322211
Q ss_pred -HhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 137 -EIGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 137 -~~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
..+++++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999999987764
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=4.8e-23 Score=164.48 Aligned_cols=148 Identities=22% Similarity=0.263 Sum_probs=111.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 73 (198)
.++|+++|.+|||||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||....... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 47999999999999999999998653 223345555566666677776 67899999997654321 23367
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++++|+|++++.++.....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 88999999999998877654443332 3368999999999996533211 234568999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043946 154 EQAFMAMTADIKN 166 (198)
Q Consensus 154 ~~~~~~l~~~~~~ 166 (198)
++++++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988764
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=3.9e-23 Score=143.32 Aligned_cols=146 Identities=19% Similarity=0.140 Sum_probs=100.2
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 043946 7 LLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT--------ITSSYYRGAH 77 (198)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 77 (198)
+++|.+|||||||+++|.+.... ....+..+.+.........+ ..+.+||+||...... .+...+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999975421 12223333334444455555 6799999999876433 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHH
Q 043946 78 GIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQA 156 (198)
Q Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~ 156 (198)
++++|+|+.++.+.... .....+.. .+.|+++|+||+|+.+.... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875433221 12222222 25899999999998654321 223334555 7899999999999999
Q ss_pred HHHHHHH
Q 043946 157 FMAMTAD 163 (198)
Q Consensus 157 ~~~l~~~ 163 (198)
|++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999865
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=4.1e-23 Score=165.10 Aligned_cols=159 Identities=24% Similarity=0.231 Sum_probs=109.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-----------TS 70 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 70 (198)
.++|+++|.+|+|||||+|+|++... .....++.+.+.....+..++ ..+.+|||||....... ..
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 58999999999999999999997542 223334444444445555555 47899999997543321 12
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHH-HHh----CCcEEEE
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFA-DEI----GIPFMET 145 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 145 (198)
..++.+|++|+|+|++++.+..... +...+ ...+.|+++|+||+|+.+.. ...++..... ..+ .++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~---~~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLI---LEAGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHH---HHcCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEEE
Confidence 3678999999999999876654432 22222 22368999999999997221 1122222222 222 3689999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhh
Q 043946 146 SAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
||++|.|++++|+++.+.+.+..
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998776543
No 163
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-22 Score=132.66 Aligned_cols=171 Identities=24% Similarity=0.380 Sum_probs=138.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccc-cccccccccCccE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--YLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERF-RTITSSYYRGAHG 78 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~d~ 78 (198)
..||+|+|..++|||++++.|+... ......+|+. +++...++.+ +-.-.+.++||.|.... ..+-.+|++-+|+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4689999999999999999998533 2334556655 4444555443 44457999999997766 5677889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043946 79 IIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
+++||+..|++||+.+.-....+.+... ..+|+++++||.|+.+.+++..+.+..|++.-.+.++++++.+...+-|.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999988777666666544 459999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcCC
Q 043946 158 MAMTADIKNRMASQPAM 174 (198)
Q Consensus 158 ~~l~~~~~~~~~~~~~~ 174 (198)
.+|...+.+...+..-+
T Consensus 168 ~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 168 TYLASRLHQPQSKSTFP 184 (198)
T ss_pred HHHHHhccCCcccccCc
Confidence 99999887655544333
No 164
>PRK11058 GTPase HflX; Provisional
Probab=99.90 E-value=1.1e-22 Score=160.85 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc--cccc------cccccC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF--RTIT------SSYYRG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~~ 75 (198)
.+|+++|.+|||||||+|+|.+........++.+.+.....+.+.+. ..+.+|||+|.... ...+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999986544333344445555555656542 26789999997331 1112 234688
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc-EEEEeccCCCCHH
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSLNVE 154 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~ 154 (198)
+|++++|+|++++.+...+..|...+......+.|+++|+||+|+..... ..... ...+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~~--~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRIDR--DEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHHH--HhcCCCceEEEeCCCCCCHH
Confidence 99999999999988877776666666665555789999999999864211 11111 123444 5889999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 155 QAFMAMTADIKN 166 (198)
Q Consensus 155 ~~~~~l~~~~~~ 166 (198)
+++++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999988854
No 165
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=1.9e-22 Score=155.89 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=105.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccc-------ccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS-YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-FRTIT-------SSY 72 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~~ 72 (198)
..++|+++|.+|||||||+|+|++..+... ..+..+.......+..++ .++.+|||||... +..+. ...
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 356999999999999999999998765321 112222233334455555 5789999999743 22211 124
Q ss_pred ccCccEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--CcEEEEeccC
Q 043946 73 YRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAKD 149 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~ 149 (198)
+..+|+++||+|..+ ++.... .|+..+.. .+.|+++|+||+|+.+. ...++.+.+.... ..++++||++
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 678999999999765 233332 34444433 24688899999998643 2445555555444 5799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTADIKN 166 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~ 166 (198)
|.|++++|++|.+.+.+
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999999999887654
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=1.1e-22 Score=166.75 Aligned_cols=157 Identities=20% Similarity=0.312 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCCccc------ceeeeEEE--EEEE---CCeEEEEEEEeCCCccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS-------YLDSYIST------IGVDFKIR--TVEQ---DGKTVKLQIWDTAGQER 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~------~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~~ 64 (198)
.=+|+++|+.++|||||+++|+... +...+..+ .+.+.... .+.+ ++..+.+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3479999999999999999998532 11111111 13333322 2333 45668999999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC---c
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI---P 141 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 141 (198)
+...+..++..+|++|+|+|++++.+......|...+. .+.|+++|+||+|+.+.. ..+...++...+++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 98888999999999999999998766666666654332 368999999999986432 12233445555565 3
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHH
Q 043946 142 FMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 142 ~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
++++||++|.|++++|++|.+.+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCC
Confidence 899999999999999999987764
No 167
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.90 E-value=1.8e-22 Score=168.65 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=113.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+...|+|+|..++|||||+++|....+......+.+.+.....+.+++ ..+.||||||++.|..++...+..+|++||
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 567899999999999999999987766555555555555555666665 679999999999999999989999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHH-------HHHHhC--CcEEEEeccCCCC
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKA-------FADEIG--IPFMETSAKDSLN 152 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~S~~~~~~ 152 (198)
|||+++...-. +...+......++|+++++||+|+.+.. .+.+.. +...++ ++++++||++|.|
T Consensus 367 VVdAddGv~~q----T~e~i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 367 VVAADDGVMPQ----TIEAINHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEECCCCCCHh----HHHHHHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 99998843211 1222222233478999999999996532 222221 122333 6899999999999
Q ss_pred HHHHHHHHHHH
Q 043946 153 VEQAFMAMTAD 163 (198)
Q Consensus 153 i~~~~~~l~~~ 163 (198)
++++|++|...
T Consensus 440 I~eLle~I~~~ 450 (787)
T PRK05306 440 IDELLEAILLQ 450 (787)
T ss_pred chHHHHhhhhh
Confidence 99999998753
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1e-22 Score=141.57 Aligned_cols=142 Identities=23% Similarity=0.255 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc----ccccccccCccEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR----TITSSYYRGAHGII 80 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~~~~~~~d~~i 80 (198)
+|+++|.+|+|||||+|+|.+.... ...+ ..+.+... .+||+||..... ......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--ARKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--Cccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 7999999999999999998864311 1111 11222221 269999963211 11123468999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC--cEEEEeccCCCCHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI--PFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~S~~~~~~i~~~~~ 158 (198)
+|+|+++..++. ..|+..+ ..+.|+++++||+|+.+. ..+.+.+++...+. +++++|+++|.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999876642 2333222 235799999999998542 35666677777774 899999999999999999
Q ss_pred HHHHHHHHhh
Q 043946 159 AMTADIKNRM 168 (198)
Q Consensus 159 ~l~~~~~~~~ 168 (198)
+|.+.+.+..
T Consensus 141 ~l~~~~~~~~ 150 (158)
T PRK15467 141 YLASLTKQEE 150 (158)
T ss_pred HHHHhchhhh
Confidence 9988876543
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=3.6e-22 Score=140.50 Aligned_cols=155 Identities=25% Similarity=0.257 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT-----------ITS 70 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 70 (198)
+++|+++|.+|+|||||+++|.+.... ....+..+.......+..++ ..+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 689999999999999999999876532 12223333333334455555 4578999999643311 112
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHH-HHHHh----CCcEEEE
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKA-FADEI----GIPFMET 145 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~~ 145 (198)
..+..+|++++|+|+.++.+.... .+...+ ...+.|+++++||+|+........+...+ ..... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~---~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLI---LEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHH---HhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 346789999999999987664432 222222 22368999999999987553222222222 22222 2689999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 043946 146 SAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~ 163 (198)
|++++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 170
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.8e-22 Score=161.70 Aligned_cols=175 Identities=22% Similarity=0.238 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--------FRTITSSYYR 74 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 74 (198)
++|+++|.+|||||||+|+|.+.... ....+..+.+.....+.+.+ ..+.+|||||.+. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999976531 22234444455555666666 7899999999876 2233455678
Q ss_pred CccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCC
Q 043946 75 GAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSL 151 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 151 (198)
.+|++++|+|+.++.+.. .+..|+ .. .+.|+++|+||+|+.+. .+...++ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l---~~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKIL---RK---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998753322 223333 22 26899999999997532 1222222 34565 48999999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 152 NVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
|++++|++|.+..... ...........+.+-+.++.+|++
T Consensus 149 gv~~l~~~I~~~~~~~---~~~~~~~~~~~v~ivG~~n~GKSt 188 (435)
T PRK00093 149 GIGDLLDAILEELPEE---EEEDEEDEPIKIAIIGRPNVGKSS 188 (435)
T ss_pred CHHHHHHHHHhhCCcc---ccccccccceEEEEECCCCCCHHH
Confidence 9999999998733221 111113346778888888888875
No 171
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=5.4e-22 Score=155.24 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=114.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-------RTITSSYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~d 77 (198)
.|+|+|.||||||||+|+|.+.+......+.++.....-.+.... ...+.++|+||...- .......+.++|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 689999999999999999997654333334444444444444443 135899999996421 111223578899
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--CcEEEEeccCC
Q 043946 78 GIIIVYDVT---DQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAKDS 150 (198)
Q Consensus 78 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 150 (198)
++++|+|++ +.+++..+..|++.+..+.. .+.|+++|+||+|+.....+ .+.+.++.+..+ .+++++||+++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998 45567777788877766532 35899999999998654322 334444544444 47899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 043946 151 LNVEQAFMAMTADIKNR 167 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~~~ 167 (198)
.|+++++++|.+.+.+.
T Consensus 319 ~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 319 LGVKELCWDLMTFIEEN 335 (390)
T ss_pred cCHHHHHHHHHHHhhhC
Confidence 99999999999888654
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=1.4e-22 Score=161.99 Aligned_cols=177 Identities=21% Similarity=0.227 Sum_probs=121.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE--------RFRTITSSYYRG 75 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 75 (198)
+|+++|.+|||||||+|+|.+.... ....++.+.+.....+.+.+ ..+.+|||||.. .+......++..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999976531 22334444455555666666 579999999962 334455667899
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHH
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVE 154 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 154 (198)
+|++++|+|+.++.+... ..+...+.+ .+.|+++|+||+|+...... .. .+...++ +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~-~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AA-EFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HH-HHHhcCCCCeEEEeCCcCCChH
Confidence 999999999987543222 122333333 26899999999998654321 11 1335566 79999999999999
Q ss_pred HHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 155 QAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
++++++.+.+.+... ..........+.+-+.+..+|++
T Consensus 150 ~ll~~i~~~l~~~~~--~~~~~~~~~~v~ivG~~~~GKSs 187 (429)
T TIGR03594 150 DLLDAILELLPEEEE--EEEEEDGPIKIAIIGRPNVGKST 187 (429)
T ss_pred HHHHHHHHhcCcccc--cccccCCceEEEEECCCCCCHHH
Confidence 999999887744221 11222344567788888888875
No 173
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=2e-22 Score=167.04 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=112.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEE--EEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRT--VEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI 79 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 79 (198)
+..+|+|+|..++|||||+++|....+.....++.+.+..... +...+....+.+|||||++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4578999999999999999999877665444444443333333 33334457899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHH-------HHhC--CcEEEEeccCC
Q 043946 80 IIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFA-------DEIG--IPFMETSAKDS 150 (198)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-------~~~~--~~~~~~S~~~~ 150 (198)
|+|+|+++......... +......++|+++++||+|+.... .+.+.... ..++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~----I~~~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEA----INYIQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHH----HHHHHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 99999987533222222 222233478999999999986532 22222222 2233 58999999999
Q ss_pred CCHHHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTADI 164 (198)
Q Consensus 151 ~~i~~~~~~l~~~~ 164 (198)
.|++++|++|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999987754
No 174
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=5.9e-23 Score=134.87 Aligned_cols=158 Identities=27% Similarity=0.447 Sum_probs=123.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+.+.++|..++|||||.|....+.+.+...|+.+ +....++-++ +.+.+||.||+..+..+|..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 46889999999999999999998888888888877 3444444444 8899999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~~ 156 (198)
+|+.+++.+..... ....+.+..-.++|+++++||.|++..- ...++-.-... ..+-++.+|+++..|++.+
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 99999887765544 4444444455689999999999997643 33322221111 1245799999999999999
Q ss_pred HHHHHHHHHH
Q 043946 157 FMAMTADIKN 166 (198)
Q Consensus 157 ~~~l~~~~~~ 166 (198)
.+||++....
T Consensus 174 ~~Wli~hsk~ 183 (186)
T KOG0075|consen 174 LDWLIEHSKS 183 (186)
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 175
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=156.15 Aligned_cols=179 Identities=19% Similarity=0.150 Sum_probs=127.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR---------TITSSYY 73 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 73 (198)
..|+++|.||||||||+|||++.+. .-+..|+.+.+.......+.+ ..+.++||+|.+... .+....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 4699999999999999999998543 334556777777778888888 558999999966322 2344567
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCC
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLN 152 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 152 (198)
..+|++|||+|....-+-.. ....+.+. ..++|+++|+||+|... .+......-.+|. ..+.+||..|.|
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 88999999999987432111 22222233 23689999999999752 2222223334454 789999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 153 VEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
+.++++++.+.+. ...+........+..+.+-++|+.+||+
T Consensus 153 i~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSs 193 (444)
T COG1160 153 IGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSS 193 (444)
T ss_pred HHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchH
Confidence 9999999999875 2222222222478899999999999987
No 176
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=3.6e-22 Score=143.65 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=103.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc----------cccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE----------RFRTITSS 71 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~ 71 (198)
..++|+++|.+|||||||+++|.+..+.....++.+.+.....+..+ ..+.+||+||.. .+......
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45899999999999999999999865444444444444433333332 579999999942 22223333
Q ss_pred ccc---CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHHHHHhCCcEEEEe
Q 043946 72 YYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 72 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~S 146 (198)
++. ..+++++|+|..++...... .+...+. ..+.|+++++||+|+.+.... ..+++.........+++++|
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 443 34688899998775432221 1122222 236899999999998653221 12234444444467899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 043946 147 AKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~ 165 (198)
++++.|+++++++|.+.+.
T Consensus 176 a~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 176 SLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred cCCCCCHHHHHHHHHHHhc
Confidence 9999999999999987765
No 177
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=7.8e-22 Score=165.66 Aligned_cols=181 Identities=19% Similarity=0.156 Sum_probs=120.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--------FRTITSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 73 (198)
..+|+++|.+|||||||+|+|++... .....++.+.+.......+.+ ..+.+|||||.+. +......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 36899999999999999999997643 122334444444444445555 5789999999653 223344567
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCC
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLN 152 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 152 (198)
..+|++|||+|+.+.-... -..|...+.. .+.|+++|+||+|+.... .....+ ...+. ..+++||++|.|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCCCC
Confidence 8999999999997642211 1234444433 478999999999985421 111222 12333 467999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 153 VEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
++++|++|.+.+...............+.+.+-+.++.||++
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSS 465 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSS 465 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHH
Confidence 999999999887542211110112345788899999999886
No 178
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.89 E-value=5.8e-22 Score=162.44 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD---SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
+.|+++|.+++|||||+++|.+. .++++..++.+.+.....+..++ ..+.+||+||++.+.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999863 34445556666666666677766 78999999999998888888889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcC--CHHHHHHHHHHh----CCcEEEEeccCC
Q 043946 81 IVYDVTD---QESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVV--SYETAKAFADEI----GIPFMETSAKDS 150 (198)
Q Consensus 81 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~S~~~~ 150 (198)
+|+|+++ +++..++ ..+.. .++| +++++||+|+.+...+ ..+++..+.... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 3343322 22322 2567 9999999999754322 123455555544 478999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTADIKN 166 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~~ 166 (198)
.|+++++++|.+.+..
T Consensus 152 ~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 152 QGIGELKKELKNLLES 167 (581)
T ss_pred CCchhHHHHHHHHHHh
Confidence 9999999998776654
No 179
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.89 E-value=1.5e-22 Score=144.79 Aligned_cols=157 Identities=23% Similarity=0.287 Sum_probs=107.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC--CC----------------CCcccceeeeEEEEEE--ECCeEEEEEEEeCCC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY--LD----------------SYISTIGVDFKIRTVE--QDGKTVKLQIWDTAG 61 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~g 61 (198)
..++|+++|+.++|||||+++|+.... .. +.....+.......+. ..+ ..+.++|+||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence 468999999999999999999984321 11 0112233344444454 444 7899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-CCHHHHH-HHHHHhC
Q 043946 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV-VSYETAK-AFADEIG 139 (198)
Q Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~-~~~~~~~ 139 (198)
+..+.......+..+|++|+|+|+.++-... ....+..+.. .+.|+++++||+|+...+. ...+++. .+.+..+
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeecccceecccccceeeeecccccccc-cccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 9998888888899999999999998764322 2333333333 3789999999999973210 0112222 2333332
Q ss_pred ------CcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 140 ------IPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 140 ------~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
++++++||.+|.|++++++.|.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 4699999999999999999998765
No 180
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=1.4e-21 Score=136.55 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=101.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT--------ITSSYYR 74 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~ 74 (198)
..+|+++|++|+|||||+++|.+................... ........+.+||+||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG-IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE-EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 478999999999999999999976543221111111111111 1222236789999999653321 2344578
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC-CcEEEEeccCCCCH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNV 153 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i 153 (198)
.+|++++|+|+.++.. .....+...+... +.|+++++||+|+........+....+..... .+++++|++++.|+
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 8999999999998621 1112222333222 58999999999987433222333444444443 58999999999999
Q ss_pred HHHHHHHHHH
Q 043946 154 EQAFMAMTAD 163 (198)
Q Consensus 154 ~~~~~~l~~~ 163 (198)
++++++|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 181
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=5.5e-22 Score=143.39 Aligned_cols=159 Identities=18% Similarity=0.220 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccceeeeEEEEEEEC---------------------------C----
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSY---LDSYISTIGVDFKIRTVEQD---------------------------G---- 49 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~---- 49 (198)
++|+++|+.|+|||||++.+.+... ........+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999965311 11111111111111111110 1
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--C
Q 043946 50 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--S 127 (198)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~ 127 (198)
....+.+||+||++.+...+...+..+|++++|+|+.++.........+..+... ...|+++|+||+|+.+.... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence 1167999999999988777777888899999999998742111111122222222 12478999999998643211 1
Q ss_pred HHHHHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 128 YETAKAFADEI---GIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 128 ~~~~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
.+++.+++..+ +.+++++||++|.|++++|++|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 13333333332 56899999999999999999997654
No 182
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=1.4e-21 Score=148.82 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc--------ccccccccC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR--------TITSSYYRG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 75 (198)
-.|+|+|.+|||||||+|+|++...........++......+... ...++.+|||||..... ......+..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 468999999999999999999876532222221112222222222 22689999999964321 223346788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC-CcEEEEeccCCCCHH
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVE 154 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~ 154 (198)
+|++++|+|+++... .........+. ..+.|+++|+||+|+..........+..+....+ ..++++||+++.|++
T Consensus 85 ~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~ 160 (292)
T PRK00089 85 VDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVD 160 (292)
T ss_pred CCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHH
Confidence 999999999988322 11122222232 2368999999999996332222334444544444 578999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 155 QAFMAMTADIK 165 (198)
Q Consensus 155 ~~~~~l~~~~~ 165 (198)
+++++|.+.+.
T Consensus 161 ~L~~~L~~~l~ 171 (292)
T PRK00089 161 ELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHhCC
Confidence 99999988764
No 183
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=2.7e-21 Score=139.64 Aligned_cols=118 Identities=22% Similarity=0.405 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGA-HGIIIVY 83 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 83 (198)
+|+++|++|||||||+++|....+...+.++ ........+...+....+.+||+||+..+...+..++..+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988766554433 2122221221113346799999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHH-HHHh--cCCCCcEEEEEeCCCCCCC
Q 043946 84 DVTDQ-ESFNNVKQWLNE-IDRY--ASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 84 d~~~~-~s~~~~~~~~~~-~~~~--~~~~~p~iiv~nK~D~~~~ 123 (198)
|+.+. .++..+..++.. +... ...+.|+++++||+|+...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 99987 566665554433 3221 2247999999999998653
No 184
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.88 E-value=1.6e-21 Score=160.08 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=108.8
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 043946 10 GDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI------TSSYY--RGAHGIII 81 (198)
Q Consensus 10 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i~ 81 (198)
|.+|||||||+|+|.+........++.+.+.....+..++ ..+.+||+||..++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998766555556666666656666666 56899999998776443 22232 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|+|+++.+.. ..+..++. ..+.|+++++||+|+.+...+. .+.+.+.+..+++++++||++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874322 22222222 2378999999999986554443 456778888899999999999999999999998
Q ss_pred HHH
Q 043946 162 ADI 164 (198)
Q Consensus 162 ~~~ 164 (198)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 185
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-22 Score=135.50 Aligned_cols=158 Identities=28% Similarity=0.450 Sum_probs=120.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC---CC----CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD---SY----LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 76 (198)
+.|+|+|..++|||||+.++... .+ +....++.+.... ++.+.+ ..+.+||.+|++...++|..|+..+
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVCN--APLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeecc--ceeEEEEcCChHHHHHHHHHHHHHh
Confidence 57899999999999999887531 11 1223344443333 334443 6799999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH---Hh---CCcEEEEeccC
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLNEID-RYASENVNKLLVGNKCDLTDKKVVSYETAKAFAD---EI---GIPFMETSAKD 149 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~---~~~~~~~S~~~ 149 (198)
+++|+++|+++++.+......+..+. .....+.|+++.+||.|+.+. ...++++.... .. ..++.++||.+
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSALT 171 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhhh
Confidence 99999999999988887766555443 334468999999999999764 34555555444 22 25789999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 043946 150 SLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~~ 167 (198)
|.||++..+|+...+...
T Consensus 172 gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cccHHHHHHHHHHHHhhc
Confidence 999999999999988764
No 186
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=1.3e-21 Score=138.87 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=95.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc----------cccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE----------RFRTITSS 71 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~ 71 (198)
..++|+++|.+|+|||||+++|.+........++.+.+.....+..++ .+.+||+||.. .+..+...
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 457999999999999999999998653333334444444444444443 58999999953 12222233
Q ss_pred ccc---CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHHHHHhC--CcEEE
Q 043946 72 YYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAFADEIG--IPFME 144 (198)
Q Consensus 72 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~ 144 (198)
++. .+|++++|+|+.++.+.... .++..+.. .+.|+++++||+|+...... ..+++++.+...+ .++++
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 443 46899999999875443333 22333322 36899999999998643211 2344555555543 47999
Q ss_pred EeccCCCCHH
Q 043946 145 TSAKDSLNVE 154 (198)
Q Consensus 145 ~S~~~~~~i~ 154 (198)
+||++|.|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999873
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3.3e-21 Score=154.35 Aligned_cols=157 Identities=25% Similarity=0.266 Sum_probs=106.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS-YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-----------TS 70 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 70 (198)
.++|+++|.+|+|||||+|+|++.. ......++.+.+.....+...+ ..+.+|||||....... ..
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 5899999999999999999999754 2233344444444444555555 56889999996432111 12
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHH-HHHH----hCCcEEEE
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKA-FADE----IGIPFMET 145 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~~ 145 (198)
..+..+|++|+|+|++++.+..... +...+.. .+.|+++++||+|+.+... .++..+ +... ..++++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~ 324 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEE
Confidence 3678899999999999876644432 2222322 3689999999999863321 122222 2112 24689999
Q ss_pred eccCCCCHHHHHHHHHHHHHHh
Q 043946 146 SAKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~~~ 167 (198)
||++|.|++++|+++.+.+.+.
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.3e-21 Score=162.81 Aligned_cols=158 Identities=23% Similarity=0.234 Sum_probs=109.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc-cc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER----------FRTI-TS 70 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~~ 70 (198)
.++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||... +..+ ..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 479999999999999999999987531 23334444555555666676 4577999999532 1111 12
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-Hh----CCcEEEE
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-EI----GIPFMET 145 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~~ 145 (198)
..++.+|++++|+|++++.+...... +..+. ..+.|+++|+||+|+.+... .+....... .. .++++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i-~~~~~---~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKV-MSMAV---DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHH-HHHHH---HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEE
Confidence 34688999999999998876655543 22232 23689999999999965321 222222222 11 2477999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhh
Q 043946 146 SAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
||++|.|++++|+.+.+.+.+..
T Consensus 602 SAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998887533
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=3.6e-21 Score=158.09 Aligned_cols=158 Identities=22% Similarity=0.271 Sum_probs=112.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------CCcccceeeeEEEEEEE---CCeEEEEEEEeCCCccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--YLD-------------SYISTIGVDFKIRTVEQ---DGKTVKLQIWDTAGQER 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~ 64 (198)
.-+|+++|+.++|||||+++|+... +.. +.....+.......+.+ ++..+.+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999997521 111 01112222222222222 45568999999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc---
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP--- 141 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--- 141 (198)
+...+..++..+|++|+|+|++++........|.... ..+.|+++|+||+|+.+.. ......++....++.
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASD 160 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcce
Confidence 9888899999999999999999865555555554322 2368999999999986432 122233444445554
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 142 FMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 142 ~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++++||++|.|+++++++|.+.+..
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhCcc
Confidence 8999999999999999999887643
No 190
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=2.2e-21 Score=142.70 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccccccC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--------FRTITSSYYRG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~ 75 (198)
--|+++|.||||||||+|+|++.+..-......++......+...+ ..++.++||||.-. +.......+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 4589999999999999999999776543333333333334433333 47999999999432 22233446788
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC-CcEEEEeccCCCCHH
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSLNVE 154 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~ 154 (198)
+|+++||+|+.++... .-...++.+.. .+.|+++++||+|..............+..... ..++++||++|.|++
T Consensus 86 vDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 86 VDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred CcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 9999999999874321 11223333333 367999999999987654322233333333333 378999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 155 QAFMAMTADIKN 166 (198)
Q Consensus 155 ~~~~~l~~~~~~ 166 (198)
.+.+.+...+.+
T Consensus 162 ~L~~~i~~~Lpe 173 (298)
T COG1159 162 TLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHhCCC
Confidence 999998877754
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=1.1e-20 Score=158.58 Aligned_cols=153 Identities=17% Similarity=0.200 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI----------TSSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 72 (198)
.++|+++|.+|||||||+|+|.+........+..+.+.....+ .....++.+||+||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~--~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEE--EcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 5789999999999999999999865533334444444333334 334478999999998765421 1112
Q ss_pred --ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCC
Q 043946 73 --YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDS 150 (198)
Q Consensus 73 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 150 (198)
...+|++++|+|+++.+... .+..++.+ .+.|+++++||+|+.+.+.+ ..+.+++.+.++++++++|+.++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 24799999999999865432 23333433 26899999999998755443 35567788889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTADI 164 (198)
Q Consensus 151 ~~i~~~~~~l~~~~ 164 (198)
.|++++++.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999987764
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=5.7e-21 Score=147.79 Aligned_cols=163 Identities=25% Similarity=0.225 Sum_probs=117.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD-SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-----------T 69 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~ 69 (198)
..+||+|+|.||+|||||+|+|++. +......++++.+.....++.++ .++.++||+|...-... .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999974 33445556666777777787778 56788899995432111 2
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH----h-CCcEEE
Q 043946 70 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADE----I-GIPFME 144 (198)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~----~-~~~~~~ 144 (198)
...+..+|++++|+|++.+-+ .+...........+.+++||+||||+.+.+....++.+..... . .++++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~----~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGIS----EQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCch----HHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 235678999999999998765 2222223333345789999999999977543444444333222 2 268999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHhhhc
Q 043946 145 TSAKDSLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 145 ~S~~~~~~i~~~~~~l~~~~~~~~~~ 170 (198)
+||++|.++.++|+.+.+........
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhccc
Confidence 99999999999999998877665544
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.87 E-value=5.9e-21 Score=132.19 Aligned_cols=151 Identities=21% Similarity=0.154 Sum_probs=102.1
Q ss_pred EEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------cccccccCccEE
Q 043946 8 LIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT-------ITSSYYRGAHGI 79 (198)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~ 79 (198)
++|++|+|||||++++.+.... .......+.......+.... ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999875443 22223333333333333331 36799999999765533 334477899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHH---HHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043946 80 IIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYE---TAKAFADEIGIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~S~~~~~~i~~~ 156 (198)
++|+|+.+........ +.... ...+.|+++|+||+|+......... .........+.+++++|+.++.|++++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~---~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELL---RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHH---HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876654443 22222 2347899999999998754322111 112223334578999999999999999
Q ss_pred HHHHHHH
Q 043946 157 FMAMTAD 163 (198)
Q Consensus 157 ~~~l~~~ 163 (198)
+++|.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9998764
No 194
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=2.1e-23 Score=142.27 Aligned_cols=194 Identities=34% Similarity=0.569 Sum_probs=156.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeE-EEEEEEeCCCcccccccccccccCccEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT-VKLQIWDTAGQERFRTITSSYYRGAHGI 79 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 79 (198)
|+.++++|+|.-++|||+++++++...++.++..+++.++......++... +++++||..|++++..+..-|++.+.+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 457899999999999999999999888888999999998888877776543 5789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCcC-CHHHHHHHHHHhCC-cEEEEeccCCCCH
Q 043946 80 IIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTDKKVV-SYETAKAFADEIGI-PFMETSAKDSLNV 153 (198)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~S~~~~~~i 153 (198)
.+|||+++...|+....|.+.+..-. +...|+++.+||+|....... ...+..++.+.+++ .-+++|++.+.++
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni 182 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI 182 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence 99999999999999999998874321 234778999999998543222 24667788888886 7899999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 154 EQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
+|+-+.|++.+.-.-.+.......+-..+.++..+.....+
T Consensus 183 ~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~~s~~~g 223 (229)
T KOG4423|consen 183 PEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQPSEAAG 223 (229)
T ss_pred hHHHHHHHHHHHhhccCCcccccccccccCccccCcchhhh
Confidence 99999999999877666665555555555454444443333
No 195
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=1.3e-20 Score=153.95 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC----------------CeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD----------------GKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~~~~~ 66 (198)
..-|+++|.+++|||||+++|.+..+......+.+.+.....+..+ .....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4569999999999999999999876644332222222111111111 001238899999999999
Q ss_pred ccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC------------CHHHH
Q 043946 67 TITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV------------SYETA 131 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~~~ 131 (198)
.++..++..+|++++|+|+++ ++++..+. .+. ..+.|+++++||+|+...... ..+.+
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 989999999999999999987 44433332 222 236899999999998632100 00000
Q ss_pred ------------HHHHH------------Hh--CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 132 ------------KAFAD------------EI--GIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 132 ------------~~~~~------------~~--~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
..+.. .+ .++++++||++|.|+++++++|......
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 01110 11 2589999999999999999998765443
No 196
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=124.33 Aligned_cols=163 Identities=26% Similarity=0.511 Sum_probs=141.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||.++|.+..|||||.-.++++.+.+++..+.+...-.+++.+.+.+..+.+||.+|++++..+....-.++-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 48999999999999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-----CHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-----SYETAKAFADEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
+|++.+.++..+..|+.+.+.....-+|+ +|++|-|+.-.-.. ...+.+.+++..+++++.+|+..+.|+..+|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 99999999999999999988776655565 57999997432111 1234667788888999999999999999999
Q ss_pred HHHHHHHHH
Q 043946 158 MAMTADIKN 166 (198)
Q Consensus 158 ~~l~~~~~~ 166 (198)
..+.-.+.+
T Consensus 179 K~vlAklFn 187 (205)
T KOG1673|consen 179 KIVLAKLFN 187 (205)
T ss_pred HHHHHHHhC
Confidence 998887765
No 197
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.86 E-value=6.6e-21 Score=124.53 Aligned_cols=153 Identities=27% Similarity=0.418 Sum_probs=118.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+++|-.++|||||++.|.+... .+..|+.+ +....+...+ .+.+++||.+|+......|.+|+.+.|++||
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 578999999999999999999987553 35556555 5555555554 3899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--------CcEEEEeccCCCC
Q 043946 82 VYDVTDQESFNNVKQWLNEI-DRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--------IPFMETSAKDSLN 152 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~S~~~~~~ 152 (198)
|+|.+|+-.|+++.+.+.++ ........|+.|.+||.|+...- .++..+.+.+ ..+-++|+.+++|
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa-----~~eeia~klnl~~lrdRswhIq~csals~eg 166 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA-----KVEEIALKLNLAGLRDRSWHIQECSALSLEG 166 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc-----chHHHHHhcchhhhhhceEEeeeCccccccC
Confidence 99999988888876655444 44444679999999999985432 2223333333 2467899999999
Q ss_pred HHHHHHHHHHH
Q 043946 153 VEQAFMAMTAD 163 (198)
Q Consensus 153 i~~~~~~l~~~ 163 (198)
+..-.+|+...
T Consensus 167 ~~dg~~wv~sn 177 (185)
T KOG0074|consen 167 STDGSDWVQSN 177 (185)
T ss_pred ccCcchhhhcC
Confidence 99999887653
No 198
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.7e-21 Score=131.68 Aligned_cols=161 Identities=29% Similarity=0.581 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.++++++|..|.||||+.++++.+.+...+.++.+.+.....+..+.+.+++..||+.|++.+..+...++-++.+.|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 57899999999999999999999999999999999999888887766679999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
+|+..+..+.++..|...+.+.+. ++|+++.+||.|..+.. .......+.++.++.|+++|++.+-|++.-|.||.+
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhh
Confidence 999999999999999999988776 59999999999985432 233334455667789999999999999999999998
Q ss_pred HHHH
Q 043946 163 DIKN 166 (198)
Q Consensus 163 ~~~~ 166 (198)
.+.-
T Consensus 167 Kl~G 170 (216)
T KOG0096|consen 167 KLTG 170 (216)
T ss_pred hhcC
Confidence 8864
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=1.6e-20 Score=149.69 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=102.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc--CCCC-----------------------------CCCcccceeeeEEEEEEECCe
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD--DSYL-----------------------------DSYISTIGVDFKIRTVEQDGK 50 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 50 (198)
..++|+++|+.++|||||+++|+. +... .+...+.+.+.....+..++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~- 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK- 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC-
Confidence 368999999999999999999974 2211 11122344444444444444
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-- 126 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-- 126 (198)
+.+.+||+||++.+.......+..+|++++|+|++++++... ...+.... .... ..|+++++||+|+.+....
T Consensus 85 -~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~-~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 85 -YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLG-INQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred -eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcC-CCeEEEEEEChhccCccHHHH
Confidence 789999999998886666667789999999999998743211 11111222 2222 3578999999999642211
Q ss_pred --CHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHH
Q 043946 127 --SYETAKAFADEIG-----IPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 127 --~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~ 157 (198)
..+++..+++..+ ++++++||++|.|+.+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1345555666655 579999999999998754
No 200
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=123.70 Aligned_cols=154 Identities=21% Similarity=0.341 Sum_probs=117.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC--------C----cccceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS--------Y----ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTIT 69 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 69 (198)
+..||+|.|+.++||||+++.+........ + ..+...++....+ . .+..+.++++||++++.-+|
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~-~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--D-EDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--c-CcceEEEecCCCcHHHHHHH
Confidence 357999999999999999999986542111 1 1122222222222 2 22578999999999999999
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh--CCcEEEEec
Q 043946 70 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI--GIPFMETSA 147 (198)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~ 147 (198)
.-+++.+.++|+++|.+++..+ +....++.+..... .|++|++||.|+.+.. +.+++.++.... ..+++++++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeec
Confidence 9999999999999999998887 55555555544322 8999999999997664 677777766665 789999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTAD 163 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~ 163 (198)
.++++..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999999888765
No 201
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.85 E-value=1.8e-19 Score=132.62 Aligned_cols=151 Identities=24% Similarity=0.237 Sum_probs=101.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR-------TITSSYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 77 (198)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999997653222223333334444555565 689999999964322 22345788999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHH-----------------------------------------HHHh-----------
Q 043946 78 GIIIVYDVTDQE-SFNNVKQWLNE-----------------------------------------IDRY----------- 104 (198)
Q Consensus 78 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~----------- 104 (198)
++++|+|++++. ....+...+.. +.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998755 22222222210 1111
Q ss_pred -----------c--CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 105 -----------A--SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 105 -----------~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
. ....|+++|+||+|+. ..++...++.. ..++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 1236899999999985 34444444432 4689999999999999999998865
No 202
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.84 E-value=7.7e-20 Score=141.94 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=113.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC-CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD-SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TSSYYR 74 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 74 (198)
++++++|.||||||||+|.|++. ...-...++++.+.....+.++| +.+.+.||+|..+.... ....+.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 78999999999999999999974 34446677788888888899999 78899999997654332 233578
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
++|.++||+|++.+.+-.. ...+. ....+.|+++|.||.|+....... . .....+.+++.+|+++|.|++
T Consensus 296 ~ADlvL~v~D~~~~~~~~d-~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~--~---~~~~~~~~~i~iSa~t~~Gl~ 365 (454)
T COG0486 296 EADLVLFVLDASQPLDKED-LALIE----LLPKKKPIIVVLNKADLVSKIELE--S---EKLANGDAIISISAKTGEGLD 365 (454)
T ss_pred hCCEEEEEEeCCCCCchhh-HHHHH----hcccCCCEEEEEechhcccccccc--h---hhccCCCceEEEEecCccCHH
Confidence 8999999999998522111 11111 234578999999999997654311 1 111223468999999999999
Q ss_pred HHHHHHHHHHHHh
Q 043946 155 QAFMAMTADIKNR 167 (198)
Q Consensus 155 ~~~~~l~~~~~~~ 167 (198)
.+.+.|.+.+...
T Consensus 366 ~L~~~i~~~~~~~ 378 (454)
T COG0486 366 ALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHhhc
Confidence 9999998888765
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.84 E-value=2.9e-20 Score=148.27 Aligned_cols=152 Identities=20% Similarity=0.211 Sum_probs=100.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CC-----------------------------CCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--YL-----------------------------DSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.++|+++|++++|||||+++|+... .. ++..+..+.+.....+..++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-- 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-- 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC--
Confidence 6899999999999999999997321 11 11133444444444444444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc----C
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV----V 126 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~----~ 126 (198)
+.+.+|||||++.+.......+..+|++++|+|++++..+. ....++..+... . ..|+++++||+|+.+... .
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHHHHH
Confidence 78999999999887655555678899999999998731111 112222223222 2 246899999999965221 1
Q ss_pred CHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043946 127 SYETAKAFADEIG-----IPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 127 ~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~~ 158 (198)
..+++..++...+ ++++++||++|.|+++..+
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 1234555555555 4689999999999997553
No 204
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.7e-21 Score=126.64 Aligned_cols=160 Identities=23% Similarity=0.382 Sum_probs=116.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
|..++|+++|..|+|||++..++.-.... ...|+++ +.+..+... .+++.+||..|+.+....|.-|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~yK--NLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPYK--NLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCccccccc--cccceeeEccCcccccHHHHHHhcccceEE
Confidence 35689999999999999998887655443 3344444 333344333 489999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHH-----HHHhCCcEEEEeccCCCCHH
Q 043946 81 IVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAF-----ADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~S~~~~~~i~ 154 (198)
+|+|.+|++.+.... .++..+.+-...+..+++++||.|..... ...++... .+..-..++++||.+|.|++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 999999987665443 34555544444457889999999985432 12222111 11112578999999999999
Q ss_pred HHHHHHHHHHHHh
Q 043946 155 QAFMAMTADIKNR 167 (198)
Q Consensus 155 ~~~~~l~~~~~~~ 167 (198)
++++||.+.+.++
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988653
No 205
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=1.4e-19 Score=129.56 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=96.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY----------------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.++|+++|..++|||||+++|+.... ..+..+..+.+..... +.....++.++||||+..+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~--~~~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVE--YETANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeE--ecCCCeEEEEEECcCHHHHH
Confidence 47999999999999999999975310 0111223333333333 33344678999999998887
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcC---CHHHHHHHHHHhC---
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVV---SYETAKAFADEIG--- 139 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 139 (198)
......+..+|++++|+|+..+-.- .....+..+.. .+.| +++++||+|+...... ..+++.++....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 7677788899999999999864321 12223333333 2566 7789999998642221 1234555555443
Q ss_pred --CcEEEEeccCCCCHH
Q 043946 140 --IPFMETSAKDSLNVE 154 (198)
Q Consensus 140 --~~~~~~S~~~~~~i~ 154 (198)
++++++||++|.++.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 679999999998853
No 206
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.83 E-value=1e-19 Score=127.37 Aligned_cols=150 Identities=20% Similarity=0.272 Sum_probs=97.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccccccccc-
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER----------FRTITSSYY- 73 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~- 73 (198)
.|+++|.+|+|||||++.+.+........++.+.+.....+..++ .+.+||+||... +......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996554444444544444444444443 789999999432 222222333
Q ss_pred --cCccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC--HHHHHHHHH--HhCCcEEEE
Q 043946 74 --RGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS--YETAKAFAD--EIGIPFMET 145 (198)
Q Consensus 74 --~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 145 (198)
...+++++++|..+... ...+..|+.. .+.|+++++||+|+....... ........+ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 34678999999986532 2223333322 257999999999985432211 122222222 233588999
Q ss_pred eccCCCCHHHHHHHHHHH
Q 043946 146 SAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~ 163 (198)
|++++.++++++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999865
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.5e-19 Score=146.84 Aligned_cols=158 Identities=17% Similarity=0.199 Sum_probs=102.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC------CeE-----E-----EEEEEeCCCcccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD------GKT-----V-----KLQIWDTAGQERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~i~D~~g~~~~ 65 (198)
++..|+++|++++|||||+++|.+...........+.+.....+... +.. . .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 46789999999999999999998765433322222222211111110 110 1 2689999999999
Q ss_pred cccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC------------CHH-
Q 043946 66 RTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV------------SYE- 129 (198)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~------------~~~- 129 (198)
..++...+..+|++++|+|+++ ++++..+.. +. ..+.|+++++||+|+...... ...
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9888888899999999999997 455443322 22 236899999999998521100 000
Q ss_pred ----------HHHHHHHHh---------------CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 130 ----------TAKAFADEI---------------GIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 130 ----------~~~~~~~~~---------------~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++....... .++++++||.+|.|++++++.+.....+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~ 219 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQR 219 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHH
Confidence 011111111 2578999999999999999998755433
No 208
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.83 E-value=5.7e-20 Score=123.07 Aligned_cols=135 Identities=24% Similarity=0.316 Sum_probs=97.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc----cccccccccccCccEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE----RFRTITSSYYRGAHGII 80 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 80 (198)
||+++|+.|||||||+++|.+... .+..|....+ .+ .++||||.- .+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999998654 3334432222 21 346999842 34444555667899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~ 159 (198)
+|.|++++.+... ..+...+ +.|+|-|+||+|+... ....+..+++.+..|+ .+|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-P~fa~~f------~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASMF------NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-chhhccc------CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998653110 1121112 5799999999999732 2356777788888887 6799999999999999999
Q ss_pred HH
Q 043946 160 MT 161 (198)
Q Consensus 160 l~ 161 (198)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 75
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=7.5e-20 Score=132.73 Aligned_cols=147 Identities=25% Similarity=0.240 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--CCC-----------------------------CCcccceeeeEEEEEEECCeEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS--YLD-----------------------------SYISTIGVDFKIRTVEQDGKTVK 53 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 53 (198)
||+++|++|+|||||+++|+... ... +..+..+.+.....+...+ .+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 68999999999999999997422 110 0012333333344444444 57
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC----CHH
Q 043946 54 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV----SYE 129 (198)
Q Consensus 54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~----~~~ 129 (198)
+.+|||||++.+.......+..+|++|+|+|++++..-.. ......+... . ..++++|+||+|+.+.... ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8899999998876556667889999999999987532111 1222222222 1 2357888999998643211 122
Q ss_pred HHHHHHHHhCC---cEEEEeccCCCCHHHH
Q 043946 130 TAKAFADEIGI---PFMETSAKDSLNVEQA 156 (198)
Q Consensus 130 ~~~~~~~~~~~---~~~~~S~~~~~~i~~~ 156 (198)
++..+...++. +++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 34445555553 5899999999998754
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=99.83 E-value=5.5e-19 Score=144.84 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=108.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc--CCCCCCC------------cccceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD--DSYLDSY------------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT 67 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 67 (198)
..-+|+++|+.++|||||+++|+. +.+.... ....+.+.......+....+++.+||+||+.++..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 345899999999999999999986 3332211 11233444444444444458999999999999998
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-CHHHHHHHHHH-------hC
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-SYETAKAFADE-------IG 139 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~-------~~ 139 (198)
.+..++..+|++|+|+|+.+...... ..++..+.. .++|.++++||+|+...+.. ..+++..+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 89999999999999999987533222 223332322 36899999999998754311 12333333322 23
Q ss_pred CcEEEEeccCCC----------CHHHHHHHHHHHHH
Q 043946 140 IPFMETSAKDSL----------NVEQAFMAMTADIK 165 (198)
Q Consensus 140 ~~~~~~S~~~~~----------~i~~~~~~l~~~~~ 165 (198)
++++.+|+++|. ++..+|+.|.+.+.
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 679999999998 57777777666554
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=1.6e-19 Score=148.08 Aligned_cols=155 Identities=16% Similarity=0.249 Sum_probs=109.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc--CCCCCC--------------CcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD--DSYLDS--------------YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI 68 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (198)
+|+|+|+.++|||||+++|+. +.+... .....+.......+.+.+ +++.+|||||+.+|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 689999999999999999985 222211 112233333334455554 88999999999999888
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-CHHHHHHHHH-------HhCC
Q 043946 69 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-SYETAKAFAD-------EIGI 140 (198)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~ 140 (198)
...++..+|++++|+|+.+.. ......|+..+.. .++|+++++||+|+.+.+.. ..+++..++. ...+
T Consensus 81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 899999999999999998742 2333445544433 36899999999998654311 1233333332 2346
Q ss_pred cEEEEeccCCC----------CHHHHHHHHHHHHH
Q 043946 141 PFMETSAKDSL----------NVEQAFMAMTADIK 165 (198)
Q Consensus 141 ~~~~~S~~~~~----------~i~~~~~~l~~~~~ 165 (198)
+++.+||++|. |+..+|+.|.+.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999996 79899988887664
No 212
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=2.3e-19 Score=147.70 Aligned_cols=155 Identities=17% Similarity=0.151 Sum_probs=105.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc---CCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD---DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
-|+++|..++|||||+++|.+ ..+.++....++.+.....+...+. ..+.+||+||++.+.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 588999999999999999985 3334444445554444444433322 458999999999887666777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcC--CHHHHHHHHHHhC---CcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVV--SYETAKAFADEIG---IPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~S~~~~~~i~~ 155 (198)
|+|++++-.-. ..+.+..+... +.| +++|+||+|+.+.... ..+++.++....+ ++++++|+++|.|+++
T Consensus 81 VVda~eg~~~q-T~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~ 156 (614)
T PRK10512 81 VVACDDGVMAQ-TREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA 156 (614)
T ss_pred EEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence 99998732111 12222223222 455 5789999999653221 1234444544444 6899999999999999
Q ss_pred HHHHHHHHH
Q 043946 156 AFMAMTADI 164 (198)
Q Consensus 156 ~~~~l~~~~ 164 (198)
++++|.+..
T Consensus 157 L~~~L~~~~ 165 (614)
T PRK10512 157 LREHLLQLP 165 (614)
T ss_pred HHHHHHHhh
Confidence 999997654
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=1.1e-19 Score=143.84 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCcccceeeeEEEE--------------EEE----CC------eEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYL---DSYISTIGVDFKIRT--------------VEQ----DG------KTVKLQ 55 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~~~ 55 (198)
.++|+++|..++|||||+++|.+.... ++.....+....... +.. ++ ....+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 589999999999999999999753211 111111111111000 001 11 135799
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHH
Q 043946 56 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKA 133 (198)
Q Consensus 56 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~ 133 (198)
+||+||++.+...+......+|++++|+|++++.........+..+... . ..|+++++||+|+.+.... ..+++.+
T Consensus 84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-g-i~~iIVvvNK~Dl~~~~~~~~~~~~i~~ 161 (406)
T TIGR03680 84 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-G-IKNIVIVQNKIDLVSKEKALENYEEIKE 161 (406)
T ss_pred EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-C-CCeEEEEEEccccCCHHHHHHHHHHHHh
Confidence 9999999999877777888899999999999643111112222223222 1 2478999999999753211 1233444
Q ss_pred HHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 134 FADEI---GIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 134 ~~~~~---~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
+.... +++++++||++|.|+++++++|...+
T Consensus 162 ~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 162 FVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 44333 56899999999999999999998755
No 214
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.4e-18 Score=136.76 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=123.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG-KTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
+..=|++||+...|||||+..+-..+....-.-.++.+.....+..+. ..-.+.++||||++.|..++.+-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 455689999999999999999998887776667777777777776652 2247899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC---------CcEEEEeccCCC
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG---------IPFMETSAKDSL 151 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~ 151 (198)
+|++++|.-. .+..+.+......+.|+++++||+|.++. .+.....-...++ ..++++||++|.
T Consensus 84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998533 44455555666678999999999999854 3444444444444 368999999999
Q ss_pred CHHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTADI 164 (198)
Q Consensus 152 ~i~~~~~~l~~~~ 164 (198)
|++++++.+.-..
T Consensus 157 Gi~eLL~~ill~a 169 (509)
T COG0532 157 GIDELLELILLLA 169 (509)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999876444
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=2.6e-19 Score=141.72 Aligned_cols=160 Identities=20% Similarity=0.251 Sum_probs=101.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccceeeeEEEEEEE--------------C------C----eEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY---LDSYISTIGVDFKIRTVEQ--------------D------G----KTVKL 54 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~~~~~~~--------------~------~----~~~~~ 54 (198)
..++|+++|+.++|||||+.+|.+... .++.....+.......+.+ . + ....+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999964211 1111122222221111111 0 0 02578
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHH
Q 043946 55 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETA 131 (198)
Q Consensus 55 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~ 131 (198)
.+||+||++.+..........+|++++|+|+.++. ...... .+..+... . ..|+++|+||+|+.+.... ..+++
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~~~-~-i~~iiVVlNK~Dl~~~~~~~~~~~~i 164 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALDII-G-IKNIVIVQNKIDLVSKERALENYEQI 164 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc-C-CCcEEEEEEeeccccchhHHHHHHHH
Confidence 99999999888665555667789999999999643 111111 12222222 1 2478999999999754321 12334
Q ss_pred HHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 132 KAFADEI---GIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 132 ~~~~~~~---~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
..++... +.+++++||++|.|+++++++|.+.+
T Consensus 165 ~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 165 KEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 4444332 46899999999999999999988765
No 216
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=2.7e-19 Score=130.77 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--CC-----------------------------CCCcccceeeeEEEEEEECCeEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS--YL-----------------------------DSYISTIGVDFKIRTVEQDGKTVK 53 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 53 (198)
+|+++|+.++|||||+.+|+... .. .+.....+.+.....+...+ .+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 58999999999999999996321 10 01112233333444454544 78
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--c
Q 043946 54 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK--V 125 (198)
Q Consensus 54 ~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~ 125 (198)
+.+||+||+..+...+...+..+|++|+|+|++++.. + ......+...... ...|+++++||+|+.... .
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccH
Confidence 9999999988776666677888999999999988421 1 1112222222221 136899999999997321 1
Q ss_pred CC----HHHHHHHHHHhC-----CcEEEEeccCCCCHH
Q 043946 126 VS----YETAKAFADEIG-----IPFMETSAKDSLNVE 154 (198)
Q Consensus 126 ~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i~ 154 (198)
.. .+++.......+ ++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 123333344443 569999999999987
No 217
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.8e-18 Score=135.82 Aligned_cols=154 Identities=20% Similarity=0.135 Sum_probs=125.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
++.-|.|||....|||||+.+|-+.+......-+++..+....+.++.+ -+++|.||||+..|..++.+-..-+|++++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 4567899999999999999999988777666667777777777777744 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC---------CcEEEEeccCCCC
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG---------IPFMETSAKDSLN 152 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~~ 152 (198)
|+.++|.-. .+..+.+......+.|+++.+||+|.++. +.+.+.+....++ +.++++||++|.|
T Consensus 231 VVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 999998543 45555566667779999999999998754 4555555444444 4689999999999
Q ss_pred HHHHHHHHHHH
Q 043946 153 VEQAFMAMTAD 163 (198)
Q Consensus 153 i~~~~~~l~~~ 163 (198)
++.+-+.+.-.
T Consensus 304 l~~L~eaill~ 314 (683)
T KOG1145|consen 304 LDLLEEAILLL 314 (683)
T ss_pred hHHHHHHHHHH
Confidence 99999887643
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.80 E-value=8.5e-19 Score=127.72 Aligned_cols=113 Identities=22% Similarity=0.250 Sum_probs=78.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCC-------------------CcccceeeeEEEEEEE---CCeEEEEEEEeCCCc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDS-------------------YISTIGVDFKIRTVEQ---DGKTVKLQIWDTAGQ 62 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 62 (198)
+|+++|+.++|||||+++|+....... .....+.......+.+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432211 0011111112222222 345688999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9888778888999999999999987655432 333333322 358999999999975
No 219
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=2.1e-18 Score=127.50 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-------FRTITSSYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d 77 (198)
.|.++|.||+|||||+++|...+..--..+.++.....-++..+.. ..+.+-|.||.-. .......-+++++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf-~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDF-SQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeecccc-ceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 4679999999999999999875433233333333333333333332 3488889999421 2222334567899
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc-EEEEeccCCC
Q 043946 78 GIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSL 151 (198)
Q Consensus 78 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 151 (198)
.++||+|++.+ ..+..+..+..++..+.. .+.|.++|+||+|+++. ....+.++.+...-+ ++++||++++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~e 353 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSGE 353 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeecccc
Confidence 99999999988 777777777766665533 46899999999998633 233346666666544 8999999999
Q ss_pred CHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTAD 163 (198)
Q Consensus 152 ~i~~~~~~l~~~ 163 (198)
|+++++..|.+.
T Consensus 354 gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 354 GLEELLNGLREL 365 (366)
T ss_pred chHHHHHHHhhc
Confidence 999999887653
No 220
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=3.1e-18 Score=138.30 Aligned_cols=155 Identities=18% Similarity=0.217 Sum_probs=117.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc------cccc-c-c
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI------TSSY-Y-R 74 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~-~-~ 74 (198)
.++|+++|.||||||||+|+|.+....-...|+.+.+...-.+...+ ..+++.|+||-.+.... ...| + .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 46799999999999999999999877777788888777777777777 45889999995443211 1222 2 5
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
+.|++|-|+|+++-+.-..+.-. +.+. +.|+++++|++|....+.+ .-+.+++.+..|+|++++||++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltlQ---LlE~---g~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQ---LLEL---GIPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHHH---HHHc---CCCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 57999999999986543333222 2222 7899999999998665433 345677888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 155 QAFMAMTADIKN 166 (198)
Q Consensus 155 ~~~~~l~~~~~~ 166 (198)
++++.+.+....
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 999998865544
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=2.4e-18 Score=135.83 Aligned_cols=155 Identities=18% Similarity=0.167 Sum_probs=99.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY----------------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.++|+++|+.++|||||+++|++... ..+.....+.+. ....+......+.++|+||+++|.
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHHHHH
Confidence 58899999999999999999975210 111122333333 333444444678999999998887
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcCC---HHHHHHHHHHhC---
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVVS---YETAKAFADEIG--- 139 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 139 (198)
......+..+|++++|+|+.+...... ..++..+... +.| +++++||+|+.+..... .+++..++...+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 666666788999999999987422221 2223333332 577 67889999986432221 234455555554
Q ss_pred --CcEEEEeccCCC--------CHHHHHHHHHHH
Q 043946 140 --IPFMETSAKDSL--------NVEQAFMAMTAD 163 (198)
Q Consensus 140 --~~~~~~S~~~~~--------~i~~~~~~l~~~ 163 (198)
++++++|+++|. ++.++++.|.+.
T Consensus 166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~ 199 (394)
T PRK12736 166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEY 199 (394)
T ss_pred CCccEEEeeccccccCCCcchhhHHHHHHHHHHh
Confidence 579999999983 455555555544
No 222
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=4.6e-18 Score=125.12 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=105.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc------------cccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF------------RTIT 69 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~~ 69 (198)
+.++|+|+|+||||||||.|.+++.+.........+++....-+... +..++.++||||.-.- ...-
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46899999999999999999999988876665555544444443333 3479999999994311 1122
Q ss_pred cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-------------cCCHHHHHHHHH
Q 043946 70 SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK-------------VVSYETAKAFAD 136 (198)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-------------~~~~~~~~~~~~ 136 (198)
...+..+|.+++|+|+++.....+ .+.+..+..+. +.|-++|.||.|..... .+.....+-..+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 335678999999999996332111 22333344442 67999999999985321 111111111111
Q ss_pred HhCC----------------cEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 137 EIGI----------------PFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 137 ~~~~----------------~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.... .+|.+||++|+|++++-+||+..+.
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 1122 3899999999999999999987654
No 223
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=5.7e-18 Score=118.45 Aligned_cols=154 Identities=19% Similarity=0.255 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE----------RFRTITSSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~ 72 (198)
...|+++|.+|||||||||+|++++.......+.|.+.....+.+++. +.++|.||-. .+..+...|
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 467999999999999999999997744455566677777777777764 7889999932 223333344
Q ss_pred cc---CccEEEEEEECCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC----Cc--
Q 043946 73 YR---GAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG----IP-- 141 (198)
Q Consensus 73 ~~---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~----~~-- 141 (198)
++ +..++++++|+..+-.- ..+.+|+. ..+.|+++++||+|.....+. ...+....+... ..
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~------~~~i~~~vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLL------ELGIPVIVVLTKADKLKKSER-NKQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HhhchhheEEEEEEECCCCCcHHHHHHHHHHH------HcCCCeEEEEEccccCChhHH-HHHHHHHHHHhcCCCCccce
Confidence 42 36789999998764332 12233332 238999999999998764332 222333333332 12
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 142 FMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 142 ~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++..|+.++.|++++...|.+.+..
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhhc
Confidence 7888999999999999998887754
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.78 E-value=1.1e-17 Score=122.21 Aligned_cols=152 Identities=18% Similarity=0.190 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----------------c-------ceeeeE---------------EEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYIS----------------T-------IGVDFK---------------IRTVE 46 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~-------~~~~~~---------------~~~~~ 46 (198)
||+++|+.++|||||+++|....+...... + .+.+.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999986544321110 0 000000 01111
Q ss_pred ECCeEEEEEEEeCCCcccccccccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 47 QDGKTVKLQIWDTAGQERFRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 47 ~~~~~~~~~i~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
.. ...+.++|+||++.+.......+ ..+|++++|+|+..+..- ....++..+.. .++|+++++||+|+.+..
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA---LNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEECccccCHH
Confidence 22 25789999999988754444334 378999999998765331 11223333333 368999999999986432
Q ss_pred cCC--HHHHHHHHHH--------------------------hCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 125 VVS--YETAKAFADE--------------------------IGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 125 ~~~--~~~~~~~~~~--------------------------~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
... .+++.+..+. ..++++.+|+.+|.|++++...|..
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 211 1222222221 1248999999999999999988743
No 225
>COG2262 HflX GTPases [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=127.50 Aligned_cols=161 Identities=18% Similarity=0.131 Sum_probs=117.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc--------ccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF--------RTITSSYYR 74 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~ 74 (198)
...|.++|..|+|||||+|+|.+...........+.+.....+.+++ ...+.+-||.|.-.. .........
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 45799999999999999999997655444444445556666666664 257888899994321 011222346
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
.+|+++.|+|++++.....+......+.+....+.|+|+|.||+|+..... .......... ..+.+||++|.|++
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl~ 345 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGLD 345 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCHH
Confidence 799999999999998878888888888887666799999999999765432 1111111112 57999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 043946 155 QAFMAMTADIKNRMA 169 (198)
Q Consensus 155 ~~~~~l~~~~~~~~~ 169 (198)
.+++.|.+.+.....
T Consensus 346 ~L~~~i~~~l~~~~~ 360 (411)
T COG2262 346 LLRERIIELLSGLRT 360 (411)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999998875443
No 226
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.78 E-value=9.2e-18 Score=123.76 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=86.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC--------C----------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYL--------D----------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
+|+++|+.|+|||||+++|+...-. . +.....+.......+.+.+ .++.+|||||+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 5899999999999999999753110 0 0011122223334444444 789999999999888
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI 140 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 140 (198)
..+..+++.+|++++|+|+.+.... ....++..+.. .+.|+++++||+|+.... ..+...++...++.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~--~~~~~~~i~~~~~~ 146 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGAD--LEKVYQEIKEKLSS 146 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCC--HHHHHHHHHHHHCC
Confidence 8888899999999999999986442 33444444433 368999999999987543 13344444444553
No 227
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=5.5e-18 Score=133.86 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=94.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC-----C-----------CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD-----S-----------YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
..++|+++|..++|||||+++|++. . ...+.....+.+. ..+.++....++.+||+||++.|
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchHHH
Confidence 4689999999999999999999732 0 0111123333333 33444444478999999999988
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCcCC---HHHHHHHHHHhC--
Q 043946 66 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTDKKVVS---YETAKAFADEIG-- 139 (198)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~---~~~~~~~~~~~~-- 139 (198)
..........+|++++|+|+.++..... .+.+..+.. .+.|.+ +++||+|+.+..... .+++..++..++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~ 164 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 6656666778899999999987422121 222222322 256755 689999986532211 234556666654
Q ss_pred ---CcEEEEeccCCC
Q 043946 140 ---IPFMETSAKDSL 151 (198)
Q Consensus 140 ---~~~~~~S~~~~~ 151 (198)
++++++|+.++.
T Consensus 165 ~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 165 GDDTPIIRGSALKAL 179 (394)
T ss_pred ccCccEEECcccccc
Confidence 689999999874
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=2.4e-17 Score=118.61 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=96.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccce---eeeEEEEEEECCeEEEEEEEeCCCcccccc-----ccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIG---VDFKIRTVEQDGKTVKLQIWDTAGQERFRT-----ITSSYYR 74 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~ 74 (198)
+++|+++|.+|+|||||+|.|.+...........+ .+.....+.... ...+.+||+||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 47999999999999999999997544322222211 111111121111 23689999999653221 1222367
Q ss_pred CccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-----------CCHHHHHHHHH----Hh
Q 043946 75 GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDKKV-----------VSYETAKAFAD----EI 138 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-----------~~~~~~~~~~~----~~ 138 (198)
.+|+++++.+.. +... ..++..+... +.|+++|+||+|+..... ...+++.+.+. ..
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 789998885421 2222 3344555443 579999999999843211 01112222221 22
Q ss_pred C---CcEEEEecc--CCCCHHHHHHHHHHHHHHhhh
Q 043946 139 G---IPFMETSAK--DSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 139 ~---~~~~~~S~~--~~~~i~~~~~~l~~~~~~~~~ 169 (198)
+ -+++.+|+. .+.++..+.+.|...+.+++.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 2 268999998 679999999999999986544
No 229
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=8.8e-18 Score=132.67 Aligned_cols=156 Identities=16% Similarity=0.176 Sum_probs=99.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC-------CC---------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD-------SY---------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
..++|+++|.+++|||||+++|++. +. ..+.....+.+. ....+.....++.++||||++.|
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~--~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINT--SHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEE--eeeEEcCCCcEEEEEECCCHHHH
Confidence 3689999999999999999999852 10 111122333333 33333333467899999999887
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCcC---CHHHHHHHHHHhC--
Q 043946 66 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTDKKVV---SYETAKAFADEIG-- 139 (198)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~~-- 139 (198)
.......+..+|++++|+|+.+.... ....++..+.. .++|.+ +++||+|+.+.... ..+++..+...++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 66666777889999999999874321 11223333322 357865 57999999643211 1224555555543
Q ss_pred ---CcEEEEeccCCC----------CHHHHHHHHHHH
Q 043946 140 ---IPFMETSAKDSL----------NVEQAFMAMTAD 163 (198)
Q Consensus 140 ---~~~~~~S~~~~~----------~i~~~~~~l~~~ 163 (198)
++++++|+.+|. ++.++++.|.+.
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 678999999985 455555555443
No 230
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=1.4e-18 Score=137.27 Aligned_cols=162 Identities=26% Similarity=0.360 Sum_probs=122.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|..|+||||||-.|+...+++...+-.+.-.....+.-+. +...|.|++..+.-......-++++|++.+|
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~lv 86 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVICLV 86 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEEEE
Confidence 58999999999999999999999888766655443222223333333 5588899987666555567788999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHH-HHHHHHHhC-C-cEEEEeccCCCCHHHH
Q 043946 83 YDVTDQESFNNVKQ-WLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYET-AKAFADEIG-I-PFMETSAKDSLNVEQA 156 (198)
Q Consensus 83 ~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~S~~~~~~i~~~ 156 (198)
|+.+++++++.+.. |+..++...+ .++|+|+|+||.|.......+.+. ..-+...+. + ..++|||++-.++.|+
T Consensus 87 yavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~ 166 (625)
T KOG1707|consen 87 YAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSEL 166 (625)
T ss_pred EecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhh
Confidence 99999999999865 8888877653 579999999999997655443333 333333333 3 4799999999999999
Q ss_pred HHHHHHHHHH
Q 043946 157 FMAMTADIKN 166 (198)
Q Consensus 157 ~~~l~~~~~~ 166 (198)
|....+.+.-
T Consensus 167 fYyaqKaVih 176 (625)
T KOG1707|consen 167 FYYAQKAVIH 176 (625)
T ss_pred hhhhhheeec
Confidence 9998777753
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=9.3e-18 Score=133.06 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=95.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY----------------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.++|+++|.+++|||||+++|++..- ..+..+..+.+.....+.. ...++.++|+||+..+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~--~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET--ENRHYAHVDCPGHADYV 89 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc--CCeEEEEEECCChHHHH
Confidence 58999999999999999999985311 1112233333333333333 33678899999998876
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcC---CHHHHHHHHHHhC---
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVV---SYETAKAFADEIG--- 139 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~--- 139 (198)
......+..+|++++|+|+.....- .....+..+.. .++| +++++||+|+.+.... ..+++..+.+..+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6666778899999999999864321 12223333322 2578 6788999999753221 1234555555543
Q ss_pred --CcEEEEeccCCCCH
Q 043946 140 --IPFMETSAKDSLNV 153 (198)
Q Consensus 140 --~~~~~~S~~~~~~i 153 (198)
++++++|+.+|.++
T Consensus 166 ~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 166 DDIPIVSGSALLALEA 181 (409)
T ss_pred CcceEEEcchhhcccc
Confidence 67999999998754
No 232
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.76 E-value=7.2e-18 Score=122.82 Aligned_cols=159 Identities=20% Similarity=0.336 Sum_probs=98.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccc--eeeeEEEEEEECCeEEEEEEEeCCCcccccc-----cccccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTI--GVDFKIRTVEQDGKTVKLQIWDTAGQERFRT-----ITSSYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d 77 (198)
||++||+.++||||+.+.+.. .+.+...... +.+.....+.+.+. ..+.+||+||+..+.. .....++++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~-~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFH-KYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHc-CCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccC
Confidence 799999999999997766654 3333333322 23334444433332 6899999999875533 3566789999
Q ss_pred EEEEEEECCChhhHHHH---HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC------CHHHHHHHHHHhC---CcEEEE
Q 043946 78 GIIIVYDVTDQESFNNV---KQWLNEIDRYASENVNKLLVGNKCDLTDKKVV------SYETAKAFADEIG---IPFMET 145 (198)
Q Consensus 78 ~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~ 145 (198)
++|||+|+.+.+....+ ...+..+.+. .++..+.++++|+|+..+... ..+.+.+.+...+ +.++.+
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 99999999954433444 4444444444 357899999999998643211 1233444444555 779999
Q ss_pred eccCCCCHHHHHHHHHHHHHHh
Q 043946 146 SAKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~~~ 167 (198)
|..+. .+-+++..+++.+.-+
T Consensus 158 SI~D~-Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 158 SIWDE-SLYEAWSKIVQKLIPN 178 (232)
T ss_dssp -TTST-HHHHHHHHHHHTTSTT
T ss_pred cCcCc-HHHHHHHHHHHHHccc
Confidence 99994 6778888877776543
No 233
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.6e-18 Score=114.74 Aligned_cols=153 Identities=22% Similarity=0.287 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
=|++++|-.|+|||||++.|.+.+.. .+.||...+ ...+.+++ .+++-+|.+|+......|..++..+|++++.+
T Consensus 21 gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 21 GKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred ceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 37999999999999999999877664 445554322 33455666 78899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH---HhC--------------CcEEEE
Q 043946 84 DVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFAD---EIG--------------IPFMET 145 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~---~~~--------------~~~~~~ 145 (198)
|+.|.+.+.+....++.+.... -.+.|+++.+||+|.+... +.++...... ..+ +.++.+
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 9999998888877666654433 3579999999999987653 3444332211 111 246788
Q ss_pred eccCCCCHHHHHHHHHHH
Q 043946 146 SAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~ 163 (198)
|...+.+--+.|.|+.+.
T Consensus 174 si~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEccCccceeeeehhhh
Confidence 999999988888887654
No 234
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.3e-16 Score=118.49 Aligned_cols=153 Identities=23% Similarity=0.194 Sum_probs=110.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc-------cccccccccccCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE-------RFRTITSSYYRGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~ 76 (198)
-+++++|+|++|||||++.|.+........+.++.+...-.+...+ .++++.|+||.- ..........++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 4789999999999999999998655444555556666667777777 789999999832 1234466788999
Q ss_pred cEEEEEEECCChhh-HHHHHHHHHH-------------------------------------------------------
Q 043946 77 HGIIIVYDVTDQES-FNNVKQWLNE------------------------------------------------------- 100 (198)
Q Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~------------------------------------------------------- 100 (198)
|++++|+|+....+ .+.+...+..
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999986543 4444433322
Q ss_pred -------HHHh---cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 101 -------IDRY---ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 101 -------~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
+... ...-+|.++|+||+|+.. .++...+.+.. .++.+|+.++.|++++.+.|.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0000 111378999999999863 34444444444 7899999999999999999999884
No 235
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=1.2e-17 Score=121.67 Aligned_cols=113 Identities=18% Similarity=0.217 Sum_probs=78.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CC--------------CCcccceeeeEEEEEEEC--------CeEEEEEEEeCC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSY--LD--------------SYISTIGVDFKIRTVEQD--------GKTVKLQIWDTA 60 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~ 60 (198)
+|+++|+.++|||||+++|+...- .. +.....+.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 689999999999999999974321 10 001112222222233333 336889999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
|+..+.......+..+|++++|+|+.++........ +......++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~----l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV----LRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH----HHHHHHcCCCEEEEEECCCcc
Confidence 999998888899999999999999998654332222 222222368999999999975
No 236
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.75 E-value=4.9e-17 Score=122.39 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=94.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC----------CcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc----
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS----------YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT---- 67 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 67 (198)
..++|+|+|.+|+|||||+|+|.+..+... ..++.........+..++..+++.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999988765443 233334444555666677778999999999432211
Q ss_pred ----------------------ccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 68 ----------------------ITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 68 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
.+...+. ++|+++|+++.+... +... .++.+..... ++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~--D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPL--DIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHH--HHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 1112232 578888888876421 1111 1222333332 6899999999998652
Q ss_pred C--cCCHHHHHHHHHHhCCcEEEEeccC
Q 043946 124 K--VVSYETAKAFADEIGIPFMETSAKD 149 (198)
Q Consensus 124 ~--~~~~~~~~~~~~~~~~~~~~~S~~~ 149 (198)
. ....+.+.+.+..++++++......
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 2 2335567777888899988766533
No 237
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=5.5e-17 Score=121.55 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=76.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--CCCC---------------C-----cccceeeeEEEEEEECCeEEEEEEEeCCCc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS--YLDS---------------Y-----ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (198)
+|+++|++|+|||||+++|+... .... + ....+.......+.+.+ +++.+|||||+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG~ 81 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPGH 81 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCCc
Confidence 68999999999999999997421 1100 0 01112223333444444 88999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
.++.......++.+|++|+|+|+++.... ....++.... ..++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 88876667778999999999999875332 2223333332 236899999999998654
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.75 E-value=2e-17 Score=131.00 Aligned_cols=148 Identities=23% Similarity=0.268 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------------------------CCcccceeeeEEEEEEECCe
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDS--YLD-------------------------------SYISTIGVDFKIRTVEQDGK 50 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 50 (198)
+||+++|+.++|||||+.+|+... ... +.....+.+.....+..++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~- 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK- 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence 589999999999999999996321 110 1111223334444444443
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCH--
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSY-- 128 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~-- 128 (198)
.++.++|+||++.|.......+..+|++++|+|+..+..-.. ...+..+... . ..++++++||+|+.+......
T Consensus 80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~-~-~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLL-G-IRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHc-C-CCcEEEEEEecccccchHHHHHH
Confidence 688999999999886656667889999999999986532211 1122222222 1 236888999999865322111
Q ss_pred --HHHHHHHHHhC---CcEEEEeccCCCCHHHH
Q 043946 129 --ETAKAFADEIG---IPFMETSAKDSLNVEQA 156 (198)
Q Consensus 129 --~~~~~~~~~~~---~~~~~~S~~~~~~i~~~ 156 (198)
+++..+....+ ++++++||++|.|+++.
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 22223334443 46999999999998863
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=1.5e-17 Score=124.69 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=80.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--C----------------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS--Y----------------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
+|+++|++++|||||+++|+... . +.+.....+.+.....+.+.+ .++.+|||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 58999999999999999997311 1 112223344445555666665 789999999998887
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
..+...++.+|++|+|+|+.+...... ...+..+. ..++|+++++||+|+.+.
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~---~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD---RYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH---HcCCCEEEEEECCCCCCC
Confidence 788889999999999999987532221 22333332 236899999999998753
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.74 E-value=5e-17 Score=129.73 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--C-----------------------------CCCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--Y-----------------------------LDSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.++|+++|+.++|||||+.+|+... . .++.....+.+..... +....
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~--~~~~~ 84 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWK--FETTK 84 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEE--ecCCC
Confidence 5789999999999999999986311 0 1111122333333333 34444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-------NVKQWLNEIDRYASENV-NKLLVGNKCDLTDK 123 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~ 123 (198)
..+.++|+||+++|.......+..+|++|+|+|+.+. .+. .....+..+.. .++ ++++++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCch
Confidence 7899999999999988888889999999999999873 221 22222222222 256 46888999998621
Q ss_pred C--c----CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043946 124 K--V----VSYETAKAFADEIG-----IPFMETSAKDSLNVEQ 155 (198)
Q Consensus 124 ~--~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 155 (198)
. . ...+++..+++..+ ++++++|+++|.|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 0 11345666666665 5799999999999864
No 241
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.74 E-value=1.5e-17 Score=125.19 Aligned_cols=145 Identities=19% Similarity=0.277 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------cccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSY------------------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
+|+++|++|+|||||+++|+...-.... ....+.......+.+.+ +.+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 5899999999999999999743211000 01112223334445555 789999999998877
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEE-
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMET- 145 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 145 (198)
..+...+..+|++++|+|+++.........| ..+. ..+.|.++++||+|+.... ..+....+...++.+++.+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEE
Confidence 7788889999999999999986543322222 2232 2368999999999986542 1233444444555554443
Q ss_pred -eccCCCCHHHHH
Q 043946 146 -SAKDSLNVEQAF 157 (198)
Q Consensus 146 -S~~~~~~i~~~~ 157 (198)
...++.++..+.
T Consensus 153 ip~~~~~~~~~~v 165 (268)
T cd04170 153 LPIGEGDDFKGVV 165 (268)
T ss_pred ecccCCCceeEEE
Confidence 344544443333
No 242
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=8e-17 Score=119.92 Aligned_cols=158 Identities=20% Similarity=0.194 Sum_probs=108.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccc----ccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-----RTI----TSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~----~~~~~ 73 (198)
...|+|.|.||||||||++.+...+..-...|.++-....-.+..++ .+++++||||.=+. ..+ ..+.-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 46799999999999999999998666555556655566666666555 68999999993221 111 11122
Q ss_pred cCccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCC
Q 043946 74 RGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDS 150 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~ 150 (198)
.-.++++|++|++.. -++..-..++..+..... .|+++|+||+|..+... .+++.......+. ....+++..+
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~ 321 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATKG 321 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeeeh
Confidence 346899999999863 344444556666666554 79999999999875442 3344433444443 4678899999
Q ss_pred CCHHHHHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTADIKN 166 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~~ 166 (198)
.+++.+-+.+.....+
T Consensus 322 ~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 322 CGLDKLREEVRKTALE 337 (346)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999888877776544
No 243
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=3.3e-17 Score=128.77 Aligned_cols=159 Identities=21% Similarity=0.238 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCCC-------------CCcccceeeeEEEEE-EECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD--DSYLD-------------SYISTIGVDFKIRTV-EQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~--~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.=++.|+.+...|||||..+|+. +.... +...++++......+ ..++..+.++++||||+.+|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 34688999999999999999963 21111 223334433333332 233666899999999999999
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-CCHHHHHHHHHHhCCcEEEE
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV-VSYETAKAFADEIGIPFMET 145 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 145 (198)
....+.+..+|++|+|+|++..-..+.+..++..+. .+..+|.|+||+|++..+. .-..++++.......+++.+
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~v 215 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYV 215 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEE
Confidence 999999999999999999998766555555554443 3788999999999987641 11223333333344589999
Q ss_pred eccCCCCHHHHHHHHHHHHH
Q 043946 146 SAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~ 165 (198)
||++|.|++++|+.|++.+.
T Consensus 216 SAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 216 SAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred EeccCccHHHHHHHHHhhCC
Confidence 99999999999999988774
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=7.7e-17 Score=129.26 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC------CC----------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD------SY----------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.++|+++|++++|||||+++|+.. .. .++.....+.+.....+..++ ..+.++|+||++.|.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~~f~ 158 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHADYV 158 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHHHHH
Confidence 588999999999999999999841 11 112223333333333444443 678999999999887
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcC---CHHHHHHHHHHh----
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVV---SYETAKAFADEI---- 138 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~---- 138 (198)
......+..+|++++|+|+.+...... .+++..+... ++| +++++||+|+.+.... ..+++..+....
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 766777789999999999987533222 3333333332 577 6788999998653221 112444555543
Q ss_pred -CCcEEEEeccCCCC
Q 043946 139 -GIPFMETSAKDSLN 152 (198)
Q Consensus 139 -~~~~~~~S~~~~~~ 152 (198)
.++++++|+.++.+
T Consensus 235 ~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 235 DDIPIISGSALLALE 249 (478)
T ss_pred CcceEEEEEcccccc
Confidence 46799999998854
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.74 E-value=4.8e-17 Score=130.80 Aligned_cols=151 Identities=23% Similarity=0.238 Sum_probs=95.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------------------------CCcccceeeeEEEEEEEC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS--YLD-------------------------------SYISTIGVDFKIRTVEQD 48 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------------------------~~~~~~~~~~~~~~~~~~ 48 (198)
..++|+++|+.++|||||+++|+... ... +.....+.+.....+..+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 36899999999999999999997432 111 001112233333334333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCH
Q 043946 49 GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSY 128 (198)
Q Consensus 49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 128 (198)
..++.++||||++.+.......+..+|++++|+|+..+-.-.. ......+... . ..|+++++||+|+.+......
T Consensus 106 --~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~l-g-~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 106 --KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLL-G-IKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred --CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHh-C-CCceEEEEEeeccccchhHHH
Confidence 3688999999998886555556799999999999986432111 1112222222 2 247899999999864322112
Q ss_pred HH----HHHHHHHh----CCcEEEEeccCCCCHHHHH
Q 043946 129 ET----AKAFADEI----GIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 129 ~~----~~~~~~~~----~~~~~~~S~~~~~~i~~~~ 157 (198)
++ +..+.... .++++++||++|.|++++-
T Consensus 181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 22 22223333 3679999999999998653
No 246
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.73 E-value=9e-17 Score=120.17 Aligned_cols=163 Identities=19% Similarity=0.199 Sum_probs=108.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc-------cccccccccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE-------RFRTITSSYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~d 77 (198)
-|.++|.|++|||||++.+...+..--..+.++.....-.+.... ...+.+=|.||.- ........-+.++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 467999999999999999986443323333333333333343322 2457888999932 12222344567899
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc-EEEEeccCCC
Q 043946 78 GIIIVYDVTDQE---SFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSL 151 (198)
Q Consensus 78 ~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~ 151 (198)
++++|+|++..+ ..........++..+.. .++|.+||+||+|+....+......+.+.+..+.. .+.+|+.++.
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~ 319 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE 319 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence 999999998643 46666777777766633 47899999999997654332222233333333432 2229999999
Q ss_pred CHHHHHHHHHHHHHHhh
Q 043946 152 NVEQAFMAMTADIKNRM 168 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~~~ 168 (198)
|+++++..+.+.+.+..
T Consensus 320 g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 320 GLDELLRALAELLEETK 336 (369)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999888765
No 247
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.2e-16 Score=126.17 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=93.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC----------------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY----------------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
..++|+++|..++|||||+++|++... ..+..+..+.+.. ...+.....++.++||||+..+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCCeEEEEEECCCHHHH
Confidence 368999999999999999999986210 1111233333333 3334333467889999999887
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCcC---CHHHHHHHHHHh---
Q 043946 66 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTDKKVV---SYETAKAFADEI--- 138 (198)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~---~~~~~~~~~~~~--- 138 (198)
.......+..+|++++|+|+.++... ....++..+.. .+.|.+ +++||+|+.+.... ..+++..+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~ 164 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence 66666778899999999999874321 12233333333 257876 57999999643221 112344444443
Q ss_pred --CCcEEEEeccCCC
Q 043946 139 --GIPFMETSAKDSL 151 (198)
Q Consensus 139 --~~~~~~~S~~~~~ 151 (198)
.++++++|+.++.
T Consensus 165 ~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 165 GDDTPIIRGSALKAL 179 (396)
T ss_pred ccCCcEEEeeccccc
Confidence 3689999999875
No 248
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=1.1e-16 Score=127.60 Aligned_cols=155 Identities=17% Similarity=0.121 Sum_probs=96.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC------C----------CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD------S----------YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
..++|+++|+.++|||||+++|.+. . ..++..+..+.+.....++ ....++.++|+||+..+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~--~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE--TAKRHYAHVDCPGHADY 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc--CCCeEEEEEECCCccch
Confidence 3688999999999999999999621 1 1112224444444444443 33468899999999887
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcCCHH----HHHHHHHHh--
Q 043946 66 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVVSYE----TAKAFADEI-- 138 (198)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~----~~~~~~~~~-- 138 (198)
.......+..+|++++|+|+.+...-. ..+.+..+.. .+.| +++++||+|+.+.... .+ ++.++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~-~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEEL-LELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHH-HHHHHHHHHHHHHHhCC
Confidence 665555667899999999998643211 1223333322 3678 4678999999753221 22 233333332
Q ss_pred ---CCcEEEEecc---CCCC-------HHHHHHHHHHH
Q 043946 139 ---GIPFMETSAK---DSLN-------VEQAFMAMTAD 163 (198)
Q Consensus 139 ---~~~~~~~S~~---~~~~-------i~~~~~~l~~~ 163 (198)
.++++++|+. +|.| +.++++.|.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~ 250 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY 250 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence 2578888875 4554 55666665544
No 249
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=4.2e-17 Score=118.79 Aligned_cols=164 Identities=19% Similarity=0.220 Sum_probs=108.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEE-EECCeEEEEEEEeCCCccc-------ccccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTV-EQDGKTVKLQIWDTAGQER-------FRTITSSYY 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~ 73 (198)
.+++|+++|..|+|||||||+|..+...+...-..+.+...... ..++ ..+.+||+||.++ +......++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 36789999999999999999999655443332222222222222 1222 5799999999554 566678889
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--------cCCHHH----------HHHHH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK--------VVSYET----------AKAFA 135 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--------~~~~~~----------~~~~~ 135 (198)
...|.+++++++.|+.--.....+.+.+... .+.++++++|.+|...+- ..+... +.+++
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876433333333333332 247999999999985431 111111 11111
Q ss_pred HHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhhc
Q 043946 136 DEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 136 ~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~ 170 (198)
++ --+++..+.+.++|++++...+++.+......
T Consensus 194 q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 194 QE-VKPVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred hh-cCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 11 13788888999999999999999988744333
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=2e-16 Score=128.37 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=78.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCCC----------C-C---------cccceeeeEEEEEEECCeEEEEEEEeCC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD--DSYLD----------S-Y---------ISTIGVDFKIRTVEQDGKTVKLQIWDTA 60 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~--~~~~~----------~-~---------~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 60 (198)
.-+|+|+|++++|||||+++|+. +.... . . ....+.......+.+.+ +.+.+||||
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inliDTP 87 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLLDTP 87 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEEECC
Confidence 45899999999999999999963 11100 0 0 01112222333444444 789999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
|+.++.......+..+|++|+|+|+.+.... ....++.... ..++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccc
Confidence 9998887777788999999999999875322 1233333332 24789999999999853
No 251
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.73 E-value=8.3e-17 Score=128.52 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=96.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc--CCCC-----------------------------CCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD--DSYL-----------------------------DSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.++|+++|+.++|||||+.+|+. +... ++.....+.+.....+ ....
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~--~~~~ 84 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKF--ETPK 84 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEE--ccCC
Confidence 58899999999999999999974 1111 1112223333333333 4444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC--
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---F---NNVKQWLNEIDRYASENVN-KLLVGNKCDLTD-- 122 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~-- 122 (198)
..+.|+|+||+.+|.......+..+|++++|+|+..... + ....+.+..+..+ ++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence 789999999999988777788899999999999986421 0 1222333333332 555 678999999532
Q ss_pred CCcCC----HHHHHHHHHHhC-----CcEEEEeccCCCCHHH
Q 043946 123 KKVVS----YETAKAFADEIG-----IPFMETSAKDSLNVEQ 155 (198)
Q Consensus 123 ~~~~~----~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~ 155 (198)
..+.. .+++..++...+ ++++++|+.+|.|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 233444444433 5799999999999864
No 252
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.72 E-value=1.9e-16 Score=104.50 Aligned_cols=106 Identities=25% Similarity=0.219 Sum_probs=69.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF---------RTITSSYYR 74 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 74 (198)
||+|+|.+|+|||||+|+|.+... .....+..+.......+...+ ..+.++|+||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999997532 222223333333445556677 45679999995421 112333448
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 117 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 117 (198)
.+|++++|+|++++.. ......++.+ . .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l---~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILREL---K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHH---H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHH---h-cCCCEEEEEcC
Confidence 8999999999887422 2223333334 2 47899999998
No 253
>PRK13351 elongation factor G; Reviewed
Probab=99.71 E-value=2.6e-16 Score=132.40 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=82.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC--C------C-----CC-----cccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY--L------D-----SY-----ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~------~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
...+|+|+|+.++|||||+++|+...- . . .+ ....+.......+.+.+ ..+.+|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~ 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGHI 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCcH
Confidence 345999999999999999999974211 0 0 00 01122223334455554 789999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
++...+..+++.+|++++|+|++++........| ..+.. .++|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 8888888899999999999999987655443333 22322 3689999999999874
No 254
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=5.5e-16 Score=111.54 Aligned_cols=159 Identities=17% Similarity=0.236 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc--ccceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYI--STIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT-----------ITS 70 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 70 (198)
++|+++|.+|||||||+|.+++........ +..+.........+.+ ..+.++||||..+... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 589999999999999999999865433221 2223333333444555 5799999999553311 112
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCcC------CHHHHHHHHHHhCCcE
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTDKKVV------SYETAKAFADEIGIPF 142 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 142 (198)
......|+++||+++.+ .+- .-...++.+....+. -.++++++|+.|....... ....+..+.++.+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999886 221 112233334333331 2588999999997543211 1245566666666666
Q ss_pred EEEe-----ccCCCCHHHHHHHHHHHHHH
Q 043946 143 METS-----AKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 143 ~~~S-----~~~~~~i~~~~~~l~~~~~~ 166 (198)
+..+ +..+.+++++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5555 34577899999998888775
No 255
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=132.15 Aligned_cols=148 Identities=24% Similarity=0.271 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCCC-------------------------------CcccceeeeEEEEEEECC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--YLDS-------------------------------YISTIGVDFKIRTVEQDG 49 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 49 (198)
.++|+++|++++|||||+++|+... .... .....+.+.....+..++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 5799999999999999999998532 1100 001122223333333333
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHH
Q 043946 50 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYE 129 (198)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 129 (198)
.++.++|+||++.+.......+..+|++++|+|+..+..-.. ......+... . ..|+++++||+|+.+......+
T Consensus 104 --~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~-~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 104 --RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-G-IRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred --ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-C-CCeEEEEEEecccccchhHHHH
Confidence 678899999998876555556889999999999976432111 1222223222 1 2578889999998642211112
Q ss_pred ----HHHHHHHHhC---CcEEEEeccCCCCHHH
Q 043946 130 ----TAKAFADEIG---IPFMETSAKDSLNVEQ 155 (198)
Q Consensus 130 ----~~~~~~~~~~---~~~~~~S~~~~~~i~~ 155 (198)
++.++....+ ++++++||++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2333334444 4689999999999874
No 256
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.69 E-value=5.2e-16 Score=118.55 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=52.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEE--EEEE-------------------ECC-eEEEEEEEeCCCc-
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKI--RTVE-------------------QDG-KTVKLQIWDTAGQ- 62 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~-------------------~~~-~~~~~~i~D~~g~- 62 (198)
|+++|.|+||||||+|+|.+........|..+.+... ..+. .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999865432222222212211 1110 122 3367999999996
Q ss_pred ---ccccccccc---cccCccEEEEEEECC
Q 043946 63 ---ERFRTITSS---YYRGAHGIIIVYDVT 86 (198)
Q Consensus 63 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 86 (198)
+....+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333333 489999999999997
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.69 E-value=2.4e-16 Score=125.70 Aligned_cols=160 Identities=13% Similarity=0.201 Sum_probs=100.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC---CCCCCcccceeeeEEEEE---------------EECC---------------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS---YLDSYISTIGVDFKIRTV---------------EQDG--------------- 49 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~---------------~~~~--------------- 49 (198)
.++|.++|....|||||+++|.+.. +.++-....+.+.....+ ..+.
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 5789999999999999999998532 222222222211111110 0000
Q ss_pred -eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--
Q 043946 50 -KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-- 126 (198)
Q Consensus 50 -~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-- 126 (198)
....+.++|+||++.|.......+..+|++++|+|+.++.......+.+..+... . -.|+++++||+|+.+....
T Consensus 114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~~~~~ 191 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-K-LKHIIILQNKIDLVKEAQAQD 191 (460)
T ss_pred cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-C-CCcEEEEEecccccCHHHHHH
Confidence 0136899999999988776667778999999999998742111112222222222 2 2468899999998743211
Q ss_pred CHHHHHHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 127 SYETAKAFADE---IGIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 127 ~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
..+++.++... ...+++++||++|.|++++++.|.+.+
T Consensus 192 ~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 192 QYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 12233333322 246899999999999999999988644
No 258
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.69 E-value=1.2e-16 Score=111.76 Aligned_cols=117 Identities=26% Similarity=0.382 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccc---cccCccEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQ-DGKTVKLQIWDTAGQERFRTITSS---YYRGAHGI 79 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~~ 79 (198)
-.|+++|++|+|||+|+.+|..+...+.+.+. +... .+.+ ......+.++|+||+.+....... +...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 46899999999999999999988654443333 1111 1222 122246889999999987654433 48889999
Q ss_pred EEEEECCC-hhhHH-HHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCC
Q 043946 80 IIVYDVTD-QESFN-NVKQWLNEIDRYA--SENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 80 i~v~d~~~-~~s~~-~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~ 124 (198)
|||+|.+. +..+. .++.++..+.... ....|++|++||.|+....
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 99999984 33333 3444555554333 3578999999999997643
No 259
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=1.2e-15 Score=118.40 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=115.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC--C-------------CCCCcccceee--eEEEEEEE-CCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS--Y-------------LDSYISTIGVD--FKIRTVEQ-DGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~-------------~~~~~~~~~~~--~~~~~~~~-~~~~~~~~i~D~~g~~~~~ 66 (198)
+..++.+-..|||||..||+... . .-+...+++.. .....+.. +|..+.+.++||||+-+|.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 56788999999999999996321 1 11222333322 22333333 4577999999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC---cEE
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI---PFM 143 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 143 (198)
-...+.+..|.++++|+|+++.-..+.+...+..+.. +.-++-|+||+|++..+ ...-..++..-.|+ ..+
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Ad--pervk~eIe~~iGid~~dav 164 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAAD--PERVKQEIEDIIGIDASDAV 164 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCC--HHHHHHHHHHHhCCCcchhe
Confidence 8889999999999999999998776777776665543 67889999999998754 22222334445565 578
Q ss_pred EEeccCCCCHHHHHHHHHHHHHH
Q 043946 144 ETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 144 ~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
.+||++|.||+++++.|++.+..
T Consensus 165 ~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 165 LVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred eEecccCCCHHHHHHHHHhhCCC
Confidence 99999999999999999988754
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.69 E-value=1.3e-15 Score=128.08 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=83.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC--CC----------------CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS--YL----------------DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
...+|+|+|++++|||||+++|+... .. .+....++.+.....+.+++ .++.++||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHH
Confidence 45689999999999999999997421 10 01233445555566666666 789999999998
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
.+...+...+..+|++|+|+|+.+....... ..+..+. ..++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCCC
Confidence 8877788889999999999999875432222 2222232 23689999999999864
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.2e-16 Score=119.98 Aligned_cols=151 Identities=22% Similarity=0.270 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD-------------------------------SYLDSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.++++++|+.++|||||+-+|+.. +..+++..+.+.+.....++.+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k-- 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK-- 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC--
Confidence 579999999999999999998532 11222333444444444444444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF--NNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV 126 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 126 (198)
+.++|+|+||+.+|-.....-..++|+.|||+|+.+.+ .| .......-.+.+..+ -..+||++||+|..+-++.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccCHH
Confidence 78999999999999888888889999999999998863 11 111122223334433 2467888899999875443
Q ss_pred CHHHHHH----HHHHhC-----CcEEEEeccCCCCHHHH
Q 043946 127 SYETAKA----FADEIG-----IPFMETSAKDSLNVEQA 156 (198)
Q Consensus 127 ~~~~~~~----~~~~~~-----~~~~~~S~~~~~~i~~~ 156 (198)
..+++.. +.+..+ ++|+++|+.+|.|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 3444332 333333 56999999999997643
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=4.3e-16 Score=121.34 Aligned_cols=163 Identities=23% Similarity=0.266 Sum_probs=108.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc-cc--------ccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-RT--------ITSSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~--------~~~~~ 72 (198)
-++|+|+|+||||||||+|.|..... .-...++++.+.....++++| +++.+.||+|..+- .. .-..-
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 47899999999999999999997543 334556666677777778888 78999999996551 11 12235
Q ss_pred ccCccEEEEEEEC--CChhhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCC-CcCCHHHHHHHHHHhC---C
Q 043946 73 YRGAHGIIIVYDV--TDQESFNNVKQWLNEIDRYAS------ENVNKLLVGNKCDLTDK-KVVSYETAKAFADEIG---I 140 (198)
Q Consensus 73 ~~~~d~~i~v~d~--~~~~s~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~-~~~~~~~~~~~~~~~~---~ 140 (198)
+.++|++++|+|+ ++-++...+...+........ ...|++++.||.|+... .+... ....+....+ .
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCccc
Confidence 6789999999999 343333333333333222111 23789999999999754 21211 1111212122 2
Q ss_pred c-EEEEeccCCCCHHHHHHHHHHHHHHhh
Q 043946 141 P-FMETSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 141 ~-~~~~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
+ +.++|+++++|++.+.+.|.+.+....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 3 456999999999999999998887643
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=5e-15 Score=124.52 Aligned_cols=115 Identities=18% Similarity=0.129 Sum_probs=82.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC--C----------------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYL--D----------------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (198)
.-+|+|+|.+++|||||+++|+...-. . +....++.+.....+.+++ .++.+|||||+..
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence 458999999999999999999742110 0 0112334444555666665 7899999999988
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
+.......+..+|++++|+|+.+........ ++..+. ..++|+++++||+|+...
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~---~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQAN---RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHH---HcCCCEEEEEECCCCCCC
Confidence 8777888899999999999998854433222 222232 236899999999998754
No 264
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.62 E-value=6.5e-15 Score=119.68 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=77.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc--CCCCC------C-----Cc-------ccceeeeEEEEEEECCeEEEEEEEeCCC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD--DSYLD------S-----YI-------STIGVDFKIRTVEQDGKTVKLQIWDTAG 61 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~------~-----~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (198)
+..+|+|+|++++|||||+++|+. +.... . .. ...+.+.......++...+.+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 346899999999999999999863 11110 0 00 0012222222233333448899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
+..+.......+..+|++|+|+|+.+.-. .....++..... .+.|+++++||+|+..
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 98887766778899999999999987421 122334443322 3689999999999864
No 265
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1e-14 Score=102.37 Aligned_cols=151 Identities=21% Similarity=0.252 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc---CccEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYR---GAHGIII 81 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~i~ 81 (198)
.|+++|+.+||||+|+-.|..+.....+ ..++.....+..+. ..++++|.||+.+.......++. .+-++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 5899999999999999999877543322 22334445555555 34789999999988766656665 7999999
Q ss_pred EEECCC--hhhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH---------------------
Q 043946 82 VYDVTD--QESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTDKKVVSYETAKAFAD--------------------- 136 (198)
Q Consensus 82 v~d~~~--~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--------------------- 136 (198)
|+|..- ++--+..+.++..+... .....|++|+.||.|+.... +.+.+++..+
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk--t~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK--TAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC--cHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 999763 33223334455555444 34568999999999996432 1111111100
Q ss_pred -------------------HhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 137 -------------------EIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 137 -------------------~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
...+.|.+.|++++ +++++-+||.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 11245778899888 899999998764
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.62 E-value=2.5e-14 Score=112.43 Aligned_cols=83 Identities=20% Similarity=0.253 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVE---------------------QD-GKTVKLQIWDTAG 61 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g 61 (198)
++|+++|.||||||||+|+|.+........+..+.+...-... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999997665432223322222221111 11 1236789999999
Q ss_pred cc----ccccccccc---ccCccEEEEEEECC
Q 043946 62 QE----RFRTITSSY---YRGAHGIIIVYDVT 86 (198)
Q Consensus 62 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 86 (198)
.. ....+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 222233344 88999999999996
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.61 E-value=1.2e-14 Score=122.23 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=75.9
Q ss_pred EcCCCCcHHHHHHHHhcCCCC--C----------------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 043946 9 IGDSGVGKSCLLLRFADDSYL--D----------------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITS 70 (198)
Q Consensus 9 ~G~~~~GKStli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 70 (198)
+|++++|||||+++|+...-. . +.....+.......+.+.+ +.+.+|||||+..+...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 599999999999999642110 0 0112333344445555655 7899999999988777778
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
..+..+|++++|+|+++.........| ..+. ..+.|+++|+||+|+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~---~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAE---KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHH---HcCCCEEEEEECCCCCC
Confidence 889999999999999886554333222 2232 23689999999999863
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.61 E-value=2.7e-15 Score=96.45 Aligned_cols=136 Identities=26% Similarity=0.294 Sum_probs=96.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc----cccccccccccCccEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE----RFRTITSSYYRGAHGII 80 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~d~~i 80 (198)
||+++|..|+|||||.+.|.+... .+..+..++ +... -.+|+||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999987654 223333222 2211 235999943 22333455678899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~ 159 (198)
+|-.++++.+.. -..+.... ..|+|-|++|.|+.+.. ..+..+.+..+.|. ++|++|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f-----~p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Cccccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999986521 11111111 35799999999998633 45777888888887 7999999999999999998
Q ss_pred HHH
Q 043946 160 MTA 162 (198)
Q Consensus 160 l~~ 162 (198)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 864
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.61 E-value=5.8e-14 Score=113.80 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=71.6
Q ss_pred EEEEEeCCCcccc-----cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC
Q 043946 53 KLQIWDTAGQERF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS 127 (198)
Q Consensus 53 ~~~i~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 127 (198)
++.++||||.... .......+..+|+++||+|+.+..+... ....+.+... +.+.|+++|+||+|+.+...-.
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 4789999996431 2223347899999999999987433222 2233334332 1125999999999986433323
Q ss_pred HHHHHHHHHH----hC---CcEEEEeccCCCCHHHHHHHHHH
Q 043946 128 YETAKAFADE----IG---IPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 128 ~~~~~~~~~~----~~---~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
.+.+..+... .+ ..++++||++|.|++++++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 4555554332 22 36899999999999999999876
No 270
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.58 E-value=7.6e-14 Score=119.92 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=100.3
Q ss_pred CcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeE----------------EEEEEEeCCCcccccccccccccCcc
Q 043946 14 VGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT----------------VKLQIWDTAGQERFRTITSSYYRGAH 77 (198)
Q Consensus 14 ~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~i~D~~g~~~~~~~~~~~~~~~d 77 (198)
++||||+.++.+......-...++.+.....+..+... -.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999888777666667766666666554211 12899999999999888888888999
Q ss_pred EEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC----------------HHHHH----HH
Q 043946 78 GIIIVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS----------------YETAK----AF 134 (198)
Q Consensus 78 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~----------------~~~~~----~~ 134 (198)
++++|+|+++ ++++..+. .+.. .+.|+++++||+|+....... .+++. .+
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987 34433332 2222 368999999999985321110 01110 00
Q ss_pred ---HHHh---------------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 135 ---ADEI---------------GIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 135 ---~~~~---------------~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.... .++++++||++|.|+++++.+|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111 257899999999999999998865443
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=4.7e-14 Score=118.63 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=91.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc--CCCCC----------------CCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD--DSYLD----------------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
...+|+|+|.+++|||||+++|+. +.... +.....+.+.....+.+.+ .++.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcH
Confidence 345999999999999999999973 11100 0123344445555666665 789999999988
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC---
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI--- 140 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 140 (198)
.+.......+..+|++|+|+|+...-...... .+..+.. .++|+++++||+|+.... ......++...++.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~ 160 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPV 160 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCee
Confidence 77666777788999999999988653332222 2222322 368999999999987543 22333344344443
Q ss_pred -cEEEEeccCC
Q 043946 141 -PFMETSAKDS 150 (198)
Q Consensus 141 -~~~~~S~~~~ 150 (198)
..+++|+.++
T Consensus 161 ~~~ipisa~~~ 171 (693)
T PRK00007 161 PIQLPIGAEDD 171 (693)
T ss_pred eEEecCccCCc
Confidence 2345555444
No 272
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.56 E-value=9e-14 Score=107.94 Aligned_cols=158 Identities=14% Similarity=0.230 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--CCCCCC------------cccceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD--SYLDSY------------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITS 70 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 70 (198)
+|+|+.+...|||||+..|+.. .+.+.. ..--+.++-.+.-.+....++++|+||||+.+|.....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 7999999999999999999742 222111 01113333333333333348999999999999999999
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC-HHHHHHHHH-------HhCCcE
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS-YETAKAFAD-------EIGIPF 142 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~-------~~~~~~ 142 (198)
+.+..+|++++++|+...-. .+..-.+.+....+.+.|+|+||+|.+..+.-. .+++..+.- +++.++
T Consensus 87 Rvl~MVDgvlLlVDA~EGpM----PQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPM----PQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred hhhhhcceEEEEEEcccCCC----CchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence 99999999999999987432 233333444444578889999999998765211 123333333 334688
Q ss_pred EEEeccCCC----------CHHHHHHHHHHHHHH
Q 043946 143 METSAKDSL----------NVEQAFMAMTADIKN 166 (198)
Q Consensus 143 ~~~S~~~~~----------~i~~~~~~l~~~~~~ 166 (198)
+..|++.|. ++.-+|+.|++.+..
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~ 196 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHVPA 196 (603)
T ss_pred EEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence 888988764 466666666665543
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.54 E-value=7.9e-14 Score=101.40 Aligned_cols=161 Identities=17% Similarity=0.216 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc--ccceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------cc----c
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYI--STIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT-------IT----S 70 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~ 70 (198)
++|+++|.+|+||||++|.+++........ ...+.........+++ ..+.++||||..+... .. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 689999999999999999999876644432 2223344445556777 6789999999432211 01 1
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCcCC-------HHHHHHHHHHhCCc
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTDKKVVS-------YETAKAFADEIGIP 141 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 141 (198)
......|+++||+.+..- +- .-...+..+....+. -..++||++..|......+. ...+..+.++.+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TE-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SH-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hH-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 234678999999998832 21 112222233333332 24688888888865543311 12355667777778
Q ss_pred EEEEecc------CCCCHHHHHHHHHHHHHHhh
Q 043946 142 FMETSAK------DSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 142 ~~~~S~~------~~~~i~~~~~~l~~~~~~~~ 168 (198)
|...+.+ ...++.++|+.+-+.+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8877766 34568888888877776643
No 274
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.53 E-value=4.1e-14 Score=119.42 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=78.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC---------------CCC-C--CcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS---------------YLD-S--YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~---------------~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
+.-+|+++|+.++|||||+++|+... +.+ + +..+.........+.+++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 35699999999999999999997421 100 0 11122222222233355666899999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
.+.......+..+|++|+|+|+.+.-.......|. .+ ...+.|+++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~---~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QA---LKENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HH---HHcCCCEEEEEEChhccc
Confidence 88777788899999999999998743222212222 12 123578899999999853
No 275
>PTZ00258 GTP-binding protein; Provisional
Probab=99.53 E-value=2.6e-13 Score=105.84 Aligned_cols=85 Identities=21% Similarity=0.205 Sum_probs=58.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCe---------------EEEEEEEeCCCccc--
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGK---------------TVKLQIWDTAGQER-- 64 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-- 64 (198)
..++|+++|.||||||||+|+|.+........|..+.+.....+.++.. +.++.++|+||...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 4689999999999999999999876654444455554444444444321 23589999999432
Q ss_pred -----ccccccccccCccEEEEEEECC
Q 043946 65 -----FRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 65 -----~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
........++++|++++|+|+.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112233467899999999973
No 276
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=5e-13 Score=99.07 Aligned_cols=118 Identities=18% Similarity=0.224 Sum_probs=70.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-cccceeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-------cc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSY-ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR--T-I-------TS 70 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~-------~~ 70 (198)
..++|+|+|.+|||||||+|+|++....... ....+..........++ ..+.+|||||..... . . ..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 5689999999999999999999986543221 11222222223333444 678999999965431 0 0 12
Q ss_pred ccc--cCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 043946 71 SYY--RGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTD 122 (198)
Q Consensus 71 ~~~--~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~ 122 (198)
.++ ...|+++||..++... ... -...+..+....+. -.++++|+||+|...
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 233 2578888887665421 111 12233333332221 157999999999854
No 277
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.51 E-value=8.8e-14 Score=103.12 Aligned_cols=95 Identities=25% Similarity=0.356 Sum_probs=76.2
Q ss_pred ccccccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc
Q 043946 63 ERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP 141 (198)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 141 (198)
+++..+...++.++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+......+.+..+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 456677788999999999999999887 78889999876643 4789999999999965443333344433 457889
Q ss_pred EEEEeccCCCCHHHHHHHHH
Q 043946 142 FMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 142 ~~~~S~~~~~~i~~~~~~l~ 161 (198)
++++||++|.|++++|+.|.
T Consensus 100 v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEEEecCCchhHHHHHhhhc
Confidence 99999999999999999875
No 278
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=7.7e-14 Score=113.39 Aligned_cols=162 Identities=18% Similarity=0.179 Sum_probs=110.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC----------------eEEEEEEEeCCCccccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG----------------KTVKLQIWDTAGQERFRTI 68 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~ 68 (198)
=++|+|+...|||-|+..+.+.........+++..+....+...+ ..-.+.++||||++.|..+
T Consensus 477 IcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnl 556 (1064)
T KOG1144|consen 477 ICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNL 556 (1064)
T ss_pred eEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhh
Confidence 479999999999999999987666555555554444433333221 0013788999999999999
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc-------------CCHHHHHHH-
Q 043946 69 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV-------------VSYETAKAF- 134 (198)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-------------~~~~~~~~~- 134 (198)
+.+....||.+|+|+|+...-. .+.+..+...+..+.|+||.+||+|..-... ....-+.+|
T Consensus 557 RsrgsslC~~aIlvvdImhGle----pqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~ 632 (1064)
T KOG1144|consen 557 RSRGSSLCDLAILVVDIMHGLE----PQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFK 632 (1064)
T ss_pred hhccccccceEEEEeehhccCC----cchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHH
Confidence 9999999999999999986422 2233333333445799999999999742110 000001111
Q ss_pred ---------HHHhC---------------CcEEEEeccCCCCHHHHHHHHHHHHHHhhhc
Q 043946 135 ---------ADEIG---------------IPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 135 ---------~~~~~---------------~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~ 170 (198)
+...| +.++++||.+|.||-+++-+|++.....+.+
T Consensus 633 ~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~ 692 (1064)
T KOG1144|consen 633 ERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVE 692 (1064)
T ss_pred HHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHH
Confidence 11111 3578999999999999999999887665554
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=7.9e-13 Score=99.64 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=68.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------ccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS-YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-------TSSYY 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~ 73 (198)
..++|+++|.+|+||||++|+|++...... ...+.+...........+ .++.++||||..+.... ...++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 468999999999999999999998654211 111111122222233444 68999999996543111 11111
Q ss_pred --cCccEEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 043946 74 --RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTD 122 (198)
Q Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~ 122 (198)
...|+++||..++.......-...+..+....+ .-.++++++|+.|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 258999999665431110111223333333322 1257899999999753
No 280
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.50 E-value=9.5e-13 Score=104.71 Aligned_cols=161 Identities=21% Similarity=0.315 Sum_probs=121.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+++.|+|+.++|||.|++.++++.+......+....+....+...+....+.+-|.+-. ....+...- ..+|+++++
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~ 502 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLV 502 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEe
Confidence 578999999999999999999998888766677777777777777787778888888754 222222112 679999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP-FMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~~~~l~ 161 (198)
||.+++.++......++.-... ...|+++|+.|+|+.+..+...-+..+++.+++++ -+.+|...... .++|..|.
T Consensus 503 YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~ 579 (625)
T KOG1707|consen 503 YDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLA 579 (625)
T ss_pred cccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHH
Confidence 9999999998887766655443 46899999999999765543433448899999983 45666664323 89999988
Q ss_pred HHHHHhh
Q 043946 162 ADIKNRM 168 (198)
Q Consensus 162 ~~~~~~~ 168 (198)
....-..
T Consensus 580 ~~A~~Ph 586 (625)
T KOG1707|consen 580 TMAQYPH 586 (625)
T ss_pred HhhhCCC
Confidence 8776433
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3e-13 Score=101.82 Aligned_cols=149 Identities=24% Similarity=0.253 Sum_probs=101.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC-------------C--------------------CCCcccceeeeEEEEEEEC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY-------------L--------------------DSYISTIGVDFKIRTVEQD 48 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~-------------~--------------------~~~~~~~~~~~~~~~~~~~ 48 (198)
..+|.+-+|+..=||||||-||+..+. + .+...+++++...+.|..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 368999999999999999999964321 0 0111223444444444333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCH
Q 043946 49 GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSY 128 (198)
Q Consensus 49 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 128 (198)
+.++.+-||||++.|......-...+|++|+++|+-. .+..-...+..+....+- .++++.+||+|+.+..+-..
T Consensus 85 --KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 85 --KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred --cceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHHH
Confidence 3678899999999998777777788999999999943 222223333334444332 57888899999987654444
Q ss_pred HHH----HHHHHHhCC---cEEEEeccCCCCHHH
Q 043946 129 ETA----KAFADEIGI---PFMETSAKDSLNVEQ 155 (198)
Q Consensus 129 ~~~----~~~~~~~~~---~~~~~S~~~~~~i~~ 155 (198)
+++ ..++..+++ .++++||+.|+|+..
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 433 345666664 689999999999763
No 282
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.50 E-value=1.3e-13 Score=107.91 Aligned_cols=163 Identities=16% Similarity=0.103 Sum_probs=107.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccc---------cccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTIT---------SSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------~~~~ 73 (198)
+-..+|+|.|+||||||+|.+........+.++++.....-. ++-....+++.||||.-+..... ....
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 346799999999999999988866554444444333333233 33334678999999954321111 1122
Q ss_pred cCccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHH---HHHHHHHhCCcEEEEecc
Q 043946 74 RGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYET---AKAFADEIGIPFMETSAK 148 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~S~~ 148 (198)
+--.+|+|+.|++.. .|...-..++..+..... +.|+|+|+||+|......++.+. +..+...-+++++++|..
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~ 324 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCV 324 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEeccc
Confidence 334689999999863 344444445555555443 68999999999997665555433 333444445899999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 043946 149 DSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 149 ~~~~i~~~~~~l~~~~~~~~ 168 (198)
+.+|+-++-...++.++..+
T Consensus 325 ~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 325 QEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred chhceeeHHHHHHHHHHHHH
Confidence 99999998888887776433
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.49 E-value=1.4e-12 Score=93.83 Aligned_cols=102 Identities=20% Similarity=0.133 Sum_probs=63.4
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHH
Q 043946 53 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAK 132 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 132 (198)
...++++.|..-..... . .-+|.+|.|+|+.+.++... .....+ ...-++++||+|+........+.+.
T Consensus 93 D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHHH
Confidence 45566777732111111 1 12688999999987655221 111111 1223889999999743223344445
Q ss_pred HHHHH--hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 133 AFADE--IGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 133 ~~~~~--~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
+..+. .+++++++|+++|.|++++|+||.+.+.
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 55544 3479999999999999999999987653
No 284
>PRK13768 GTPase; Provisional
Probab=99.49 E-value=4.6e-13 Score=99.80 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=68.9
Q ss_pred EEEEEeCCCcccc---cccccccc---cC--ccEEEEEEECCChhhHHHH-H-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 53 KLQIWDTAGQERF---RTITSSYY---RG--AHGIIIVYDVTDQESFNNV-K-QWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 53 ~~~i~D~~g~~~~---~~~~~~~~---~~--~d~~i~v~d~~~~~s~~~~-~-~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
.+.+||+||..+. ...+..++ .. .+++++|+|+........+ . .|+...... ..+.|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5889999997653 22232222 22 8999999999654322221 2 222222222 23689999999999875
Q ss_pred CCcCCHHHHHH----------------------------HHHHhC--CcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 123 KKVVSYETAKA----------------------------FADEIG--IPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 123 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
..+. +...+ ..+..+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4321 11111 122333 47899999999999999999987663
No 285
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.46 E-value=2.9e-12 Score=99.00 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=56.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeE---------------EEEEEEeCCCccc---
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT---------------VKLQIWDTAGQER--- 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~--- 64 (198)
.++|+++|.||||||||+|+|.+........|..+.+...-.+.+.... .++.+.|+||...
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 3789999999999999999999866433333444444444344443321 2589999999532
Q ss_pred ----ccccccccccCccEEEEEEECC
Q 043946 65 ----FRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 65 ----~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
........++++|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112233468899999999984
No 286
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.46 E-value=3.2e-12 Score=98.25 Aligned_cols=118 Identities=24% Similarity=0.251 Sum_probs=81.4
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCC
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRY-ASENVNKLLVGNKCD 119 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D 119 (198)
.+.+.+||++|+......|..++.+++++|||+|+++- +.+.+....+..+... .-.+.|+++++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 37799999999999999999999999999999999873 2333333333322222 225789999999999
Q ss_pred CCCCC----------------cCCHHHHHHHHHHh----------CCcEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 043946 120 LTDKK----------------VVSYETAKAFADEI----------GIPFMETSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 120 ~~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
+..+. ....+.+..+.... .+....++|.+..++..+|+.+.+.+.+..
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 64210 12334444333221 134567888889999999999888887643
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.46 E-value=8e-13 Score=111.90 Aligned_cols=115 Identities=21% Similarity=0.208 Sum_probs=76.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCCC--------------CcccceeeeEEEE--EEECCeEEEEEEEeCCCccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--YLDS--------------YISTIGVDFKIRT--VEQDGKTVKLQIWDTAGQER 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~ 64 (198)
.-+|+++|+.++|||||+++|+... .... ....++....... +..++..+.+.++||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 3479999999999999999997421 1100 0011122222222 23344568899999999998
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
+.......+..+|++|+|+|+...-.......|. .... .+.|.++++||+|..
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~---~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR---ERVKPVLFINKVDRL 152 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH---cCCCeEEEEECchhh
Confidence 8777788889999999999998753322222222 2222 256889999999975
No 288
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.45 E-value=1.9e-12 Score=93.89 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=83.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCC------------Cccc-c-eeeeEEEEEEEC------------------Ce
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDS------------YIST-I-GVDFKIRTVEQD------------------GK 50 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~------------~~~~-~-~~~~~~~~~~~~------------------~~ 50 (198)
...|.|+|+.|+|||||+++++....... .... . ........+.-+ ..
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~~ 101 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPLD 101 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhccC
Confidence 56899999999999999999975311000 0000 0 000000110000 00
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHH
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYET 130 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 130 (198)
...+.++|+.|.-.. ...+....+..+.|+|+.+.+... ...... ...|.++++||+|+.+.......+
T Consensus 102 ~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~------~~~a~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 102 DIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LKYPGM------FKEADLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred CCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hhhHhH------HhhCCEEEEEHHHccccchhhHHH
Confidence 134566777762100 011112345556778877543211 111111 145789999999997543222334
Q ss_pred HHHHHHHhC--CcEEEEeccCCCCHHHHHHHHHHH
Q 043946 131 AKAFADEIG--IPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 131 ~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
..+..+..+ .+++++|++++.|++++|+++.+.
T Consensus 171 ~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 171 MKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 444444443 789999999999999999999875
No 289
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.7e-12 Score=97.62 Aligned_cols=162 Identities=18% Similarity=0.219 Sum_probs=97.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc----CCC---CCCCcccceeeeEEEEEEE-------CCeEEEEEEEeCCCcccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD----DSY---LDSYISTIGVDFKIRTVEQ-------DGKTVKLQIWDTAGQERFRT 67 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~----~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~g~~~~~~ 67 (198)
.++++.++|...+|||||.++|.. ..+ +.+....++.+.....+.. .+..+++.++|+||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 368999999999999999999953 122 2222233333333323322 24557889999999987655
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh---------
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI--------- 138 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--------- 138 (198)
.......-.|..++|+|+...-.-..++.++ +-+.. -...++|+||+|...+.+ ....+++..++.
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~~--c~klvvvinkid~lpE~q-r~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGELL--CKKLVVVINKIDVLPENQ-RASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhh--hhhhh--ccceEEEEeccccccchh-hhhHHHHHHHHHHHHHHhcCc
Confidence 4555556679999999997643222222211 11111 235577888888743321 122333332221
Q ss_pred --CCcEEEEeccCC----CCHHHHHHHHHHHHHHhh
Q 043946 139 --GIPFMETSAKDS----LNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 139 --~~~~~~~S~~~~----~~i~~~~~~l~~~~~~~~ 168 (198)
+.+++++|+..| .++.|+.+.|.+.+.+..
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 268999999999 667777666666665533
No 290
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.45 E-value=3.3e-13 Score=115.58 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=79.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC--CC--------------CCcccceeeeEEEEEEEC--------------CeE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY--LD--------------SYISTIGVDFKIRTVEQD--------------GKT 51 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~--------------~~~ 51 (198)
..-+|+|+|+.++|||||+++|+...- .. +.....+.......+.+. +..
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 456899999999999999999974321 10 011112222222233332 235
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
+.++++||||+.+|.......+..+|++|+|+|+..+-.......|.. ....++|+++++||+|..
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~----~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ----ALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH----HHHCCCCEEEEEECCccc
Confidence 788999999999998878888899999999999987644333232322 223478999999999986
No 291
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.45 E-value=7.2e-12 Score=93.59 Aligned_cols=159 Identities=15% Similarity=0.324 Sum_probs=116.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC--eEEEEEEEeCCCcccccccccccccCc----cE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG--KTVKLQIWDTAGQERFRTITSSYYRGA----HG 78 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~ 78 (198)
+|+|+|..++||||||.+|.+.. .+.+..+.++....+.-+. .-.++.+|=.-|+--+..+.+..+... .+
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred eEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 68999999999999999998754 4456666666666554332 225788998888776666666655544 58
Q ss_pred EEEEEECCChhh-HHHHHHHHHHHHHhc----------------------------------------------------
Q 043946 79 IIIVYDVTDQES-FNNVKQWLNEIDRYA---------------------------------------------------- 105 (198)
Q Consensus 79 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~---------------------------------------------------- 105 (198)
+||+.|++++.. +..+..|.+.+.++.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 899999999844 566677776632110
Q ss_pred ---------CCCCcEEEEEeCCCCCC----CCcC-------CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 106 ---------SENVNKLLVGNKCDLTD----KKVV-------SYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 106 ---------~~~~p~iiv~nK~D~~~----~~~~-------~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
+-++|+++|++|+|... +-+. ....+++||..+|+.++.+|+++..|++-+..+|.+..+
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 11377999999999832 1111 123577888999999999999999999999999998875
Q ss_pred H
Q 043946 166 N 166 (198)
Q Consensus 166 ~ 166 (198)
-
T Consensus 291 G 291 (473)
T KOG3905|consen 291 G 291 (473)
T ss_pred C
Confidence 3
No 292
>PTZ00416 elongation factor 2; Provisional
Probab=99.44 E-value=4.4e-13 Score=114.67 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCC--------------CCcccceeeeEEEEEEEC--------CeEEEEEEEe
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--YLD--------------SYISTIGVDFKIRTVEQD--------GKTVKLQIWD 58 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D 58 (198)
.-+|+|+|+.++|||||+++|+... ... +.....+.......+.+. +..+.+.++|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 4589999999999999999998521 110 011112222222233333 1247899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 59 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
|||+.++.......+..+|++|+|+|+.++-...... .+..+. ..++|+++++||+|+.
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~-~~~~~~---~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTET-VLRQAL---QERIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHH-HHHHHH---HcCCCEEEEEEChhhh
Confidence 9999988777788889999999999998754333222 222232 2368999999999986
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.44 E-value=2e-12 Score=99.15 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=67.7
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYE 129 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~ 129 (198)
+.+.++||+|..... ......+|.+++|.+...++.+..+.. .+.+ ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 668999999965322 224667999999987555554433322 1112 223899999998653311 112
Q ss_pred HHHHHHHH-------hCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 130 TAKAFADE-------IGIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 130 ~~~~~~~~-------~~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++...... +..+++.+|++++.|++++++.|.+.+..
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 23333222 22589999999999999999999987653
No 294
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.41 E-value=1.1e-11 Score=96.01 Aligned_cols=152 Identities=12% Similarity=0.175 Sum_probs=90.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC----CCC------------CCCccc---ceeeeE-----EEEEE-ECCeEEEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD----SYL------------DSYIST---IGVDFK-----IRTVE-QDGKTVKLQIW 57 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~----~~~------------~~~~~~---~~~~~~-----~~~~~-~~~~~~~~~i~ 57 (198)
.+-|.|+|+.++|||||||+|.+. ... +...++ ++++.. ..++. .++...++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 367899999999999999999865 222 111122 111221 12222 23445689999
Q ss_pred eCCCccccc-------cc----------------------cccccc-CccEEEEEE-ECC-----ChhhHHHHHHHHHHH
Q 043946 58 DTAGQERFR-------TI----------------------TSSYYR-GAHGIIIVY-DVT-----DQESFNNVKQWLNEI 101 (198)
Q Consensus 58 D~~g~~~~~-------~~----------------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~~ 101 (198)
||+|...-. .. ....+. .+|+.|+|. |.+ ..+....-..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999933110 00 222344 789999988 764 112223334566666
Q ss_pred HHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccC--CCCHHHHHHH
Q 043946 102 DRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD--SLNVEQAFMA 159 (198)
Q Consensus 102 ~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~ 159 (198)
... ++|+++++|+.|..... ..+...++..+++++++.+|... ...+..+|+.
T Consensus 177 k~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~ 231 (492)
T TIGR02836 177 KEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE 231 (492)
T ss_pred Hhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence 554 89999999999953222 34445567778888888877654 3344444443
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.41 E-value=3.5e-12 Score=93.58 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=79.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
...|+++|.+|+|||||++.+.............+ .. .+.. ....++.++|+||.- .. .......+|++++|
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i~~-~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TVVT-GKKRRLTFIECPNDI--NA-MIDIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EEEe-cCCceEEEEeCCchH--HH-HHHHHHhcCEEEEE
Confidence 35689999999999999999986421111111111 11 1111 133678899999853 11 22345789999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCcCC---HHHHHH-HHHH--hCCcEEEEeccCCCC
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTDKKVVS---YETAKA-FADE--IGIPFMETSAKDSLN 152 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~S~~~~~~ 152 (198)
+|+........ ...+..+.. .+.|. ++|+||+|+.+..... .+++.+ +..+ .+.+++.+||+++-.
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99976433221 223333322 25675 4599999986432111 112222 2211 235899999998744
No 296
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=3.8e-13 Score=95.74 Aligned_cols=146 Identities=23% Similarity=0.317 Sum_probs=92.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc-CCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccCc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD-DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-----RTITSSYYRGA 76 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 76 (198)
.=||+++|.+|+||||+--.+.. ........++.+.+.....+.+-|. ..+.+||++|++.+ .......+.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 34899999999999997433321 1111233344444555444444443 67899999999854 23456788999
Q ss_pred cEEEEEEECCChhhHHHHHHHHH---HHHHhcCCCCcEEEEEeCCCCCCCCc--C----CHHHHHHHHHHhCCcEEEEec
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLN---EIDRYASENVNKLLVGNKCDLTDKKV--V----SYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~iiv~nK~D~~~~~~--~----~~~~~~~~~~~~~~~~~~~S~ 147 (198)
+++|+|+|++..+--..+..+.. .+..+ .+...+.++++|+|+..... . ..+.+..+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998765444544444 33333 34578888999999975432 1 122333444444567777777
Q ss_pred cCC
Q 043946 148 KDS 150 (198)
Q Consensus 148 ~~~ 150 (198)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 653
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.40 E-value=2.4e-13 Score=100.17 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=58.0
Q ss_pred EEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 53 KLQIWDTAGQERFRTITSSYY--------RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
.+.++||||+.++...+.... ...-++++++|+....+ ...+..++-.+..+..-+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999887644433322 34568899999864322 222333333332222237999999999999752
Q ss_pred C--c-----CC------------HHHHHHHHHHh---C-C-cEEEEeccCCCCHHHHHHHHHHHH
Q 043946 124 K--V-----VS------------YETAKAFADEI---G-I-PFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 124 ~--~-----~~------------~~~~~~~~~~~---~-~-~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
. . .. .....+++... + + .++++|+.+++++++++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 1 0 00 01111122222 2 3 799999999999999999876654
No 298
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.40 E-value=6.6e-12 Score=83.40 Aligned_cols=114 Identities=30% Similarity=0.352 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-ccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYI-STIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.++++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999997766643332 2222 222344466778999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
++..+.+++..+ |...+......+.|.++++||.|+.+......++. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999888655 77666555556788999999999854333333222 245567888888774
No 299
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.1e-12 Score=98.19 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=93.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh--cCCCC----------C----------CCcccceeeeEEEEEEECCeEEEEEEEeCCCc
Q 043946 5 KLLLIGDSGVGKSCLLLRFA--DDSYL----------D----------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~--~~~~~----------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (198)
..+|+-.|.+|||||-..|+ ++.+. . +...++.++.++..+...+ ..+++.||||+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCCc
Confidence 46899999999999999985 12110 0 1112345555566666555 78999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcE
Q 043946 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPF 142 (198)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 142 (198)
++|..-..+.+..+|.++.|+|+...-. .+.+..+.-....++|++-++||+|..... +.+.+.++.+.+++..
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE----~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i~~ 165 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIE----PQTLKLFEVCRLRDIPIFTFINKLDREGRD--PLELLDEIEEELGIQC 165 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCcc----HHHHHHHHHHhhcCCceEEEeeccccccCC--hHHHHHHHHHHhCcce
Confidence 9999999999999999999999986432 222222222233589999999999986443 5677888888777544
Q ss_pred EE
Q 043946 143 ME 144 (198)
Q Consensus 143 ~~ 144 (198)
++
T Consensus 166 ~P 167 (528)
T COG4108 166 AP 167 (528)
T ss_pred ec
Confidence 43
No 300
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.37 E-value=6.4e-12 Score=87.68 Aligned_cols=80 Identities=25% Similarity=0.228 Sum_probs=56.5
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--CcEEEEeccCCCCHH
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAKDSLNVE 154 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~ 154 (198)
+.-|+|+|....+..- ..-...+ -..-++|+||.|+......+.+...+.+++.+ .+++++|.++|.|++
T Consensus 119 ~~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~ 190 (202)
T COG0378 119 HLRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLD 190 (202)
T ss_pred ceEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHH
Confidence 3888889988654210 0000000 01348899999998776667777777777665 799999999999999
Q ss_pred HHHHHHHHHH
Q 043946 155 QAFMAMTADI 164 (198)
Q Consensus 155 ~~~~~l~~~~ 164 (198)
++++|+....
T Consensus 191 ~~~~~i~~~~ 200 (202)
T COG0378 191 EWLRFIEPQA 200 (202)
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 301
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.36 E-value=1.3e-11 Score=92.50 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=54.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCe---------------EEEEEEEeCCCccc------
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGK---------------TVKLQIWDTAGQER------ 64 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~------ 64 (198)
|+++|.||||||||+|+|.+........+..+.+.....+.+.+. ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999987664444455554444444444432 12589999999432
Q ss_pred -ccccccccccCccEEEEEEECC
Q 043946 65 -FRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 65 -~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
........++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112223457899999999873
No 302
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.3e-11 Score=98.38 Aligned_cols=150 Identities=21% Similarity=0.266 Sum_probs=99.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD-------------------------------SYLDSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.+..+|+|...+|||||..+|+.. .-.+++..+.+.+.....|+ ...
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe--s~~ 254 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE--SKS 254 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe--cCc
Confidence 477899999999999999998532 11123334444444444444 444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
..++|.|+||+..|......-..++|+.|+|+|++..+ .|+ ...+....++.+ + -..++|++||+|+.+=.+
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-g-i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-G-ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-C-cceEEEEeecccccCccH
Confidence 78999999999999888888889999999999998532 122 122333333333 2 246788899999986433
Q ss_pred CCHHHHH----HHH-HHhC-----CcEEEEeccCCCCHHHH
Q 043946 126 VSYETAK----AFA-DEIG-----IPFMETSAKDSLNVEQA 156 (198)
Q Consensus 126 ~~~~~~~----~~~-~~~~-----~~~~~~S~~~~~~i~~~ 156 (198)
-..+++. .+. +..| +.++++|+.+|.|+-..
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 3333333 333 3333 47999999999986543
No 303
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.36 E-value=5.5e-12 Score=97.51 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=82.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCccc--ceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----ccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD-SYLDSYIST--IGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-----TSSYY 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~ 73 (198)
.+++|+|+|.+|+|||||||+|.+- .-.+...++ ..++.....+..+.. -.+.+||.||.....-. ...-+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 3689999999999999999999652 111112221 122233333333321 25999999996432111 12235
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CCCcCC----HHHHHHHHHH----h
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT-------DKKVVS----YETAKAFADE----I 138 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~-------~~~~~~----~~~~~~~~~~----~ 138 (198)
...|.+|++.+-.=.+. + ......+..+ ++|+++|-+|+|.. .++... .+++++.+.. .
T Consensus 113 ~~yD~fiii~s~rf~~n--d-v~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSERFTEN--D-VQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESSS--HH--H-HHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCCCCchh--h-HHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 67798887765322211 1 2222334333 78999999999962 111222 2333433332 2
Q ss_pred CC---cEEEEeccCC--CCHHHHHHHHHHHHHHhhhc
Q 043946 139 GI---PFMETSAKDS--LNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 139 ~~---~~~~~S~~~~--~~i~~~~~~l~~~~~~~~~~ 170 (198)
++ ++|.+|..+- .++..+.+.|.+.+..++..
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 33 5899999774 56889999998888765543
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.34 E-value=1.9e-11 Score=85.71 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=43.2
Q ss_pred EEEEeCCCccc----ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 043946 54 LQIWDTAGQER----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 118 (198)
Q Consensus 54 ~~i~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 118 (198)
+.|+|+||... ...++..++..+|++|+|.++.+...-.....+....... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 78999999643 2356777889999999999999865544444444444332 34588999984
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.34 E-value=2.1e-11 Score=91.99 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=77.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----------cccceeeeEEEEEEECCeEEEEEEEeCCCcccc------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSY----------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF------ 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------ 65 (198)
..++|+|+|.+|+|||||||.|.+....... ..+.........+.-++..+.+.++||||....
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999875443321 122233444445566788899999999993211
Q ss_pred --------------------ccc-ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 66 --------------------RTI-TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 66 --------------------~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
... ....=.++|+++|.++++... +. ...+..+.+. ...+++|-|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~--~~Di~~mk~L-s~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LK--PLDIEFMKRL-SKRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S---HHHHHHHHHH-TTTSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-ch--HHHHHHHHHh-cccccEEeEEecccccCHH
Confidence 000 011124579999999986532 11 1122223333 3358899999999985432
Q ss_pred cC--CHHHHHHHHHHhCCcEEEEe
Q 043946 125 VV--SYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 125 ~~--~~~~~~~~~~~~~~~~~~~S 146 (198)
+. -.+.+......+++.++...
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHcCceeeccc
Confidence 22 13345555666777666533
No 306
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.1e-11 Score=101.48 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=86.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--CCCC----------------CCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--SYLD----------------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
..-+|.|+|+.++|||||..+++.. .... +....++.+....++.+.+ ++.++++||||+-
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHV 87 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHV 87 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCcc
Confidence 4568999999999999999998632 1110 1112345555555666664 4889999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
+|.....+.++.+|++++|+|+...-..+.-.-|.... ..++|.++++||+|....
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECcccccc
Confidence 99999999999999999999998865433333344333 347999999999998654
No 307
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.32 E-value=7.1e-11 Score=94.48 Aligned_cols=159 Identities=17% Similarity=0.366 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC--eEEEEEEEeCCCcccccccccccccCc----cE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG--KTVKLQIWDTAGQERFRTITSSYYRGA----HG 78 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~ 78 (198)
.|+|+|..++|||||+.+|.+.. ...++.+.++....+.-+. ...++.+|-+.|...+..+....+... -+
T Consensus 27 ~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~ 103 (472)
T PF05783_consen 27 SVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL 103 (472)
T ss_pred eEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence 68999999999999999987643 3445556666555443222 224689999988766766665555432 47
Q ss_pred EEEEEECCChhhH-HHHHHHHHHHH-------------------------Hh------c---------------------
Q 043946 79 IIIVYDVTDQESF-NNVKQWLNEID-------------------------RY------A--------------------- 105 (198)
Q Consensus 79 ~i~v~d~~~~~s~-~~~~~~~~~~~-------------------------~~------~--------------------- 105 (198)
+|+|+|.+.|..+ ..+..|+..++ .+ .
T Consensus 104 vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~ 183 (472)
T PF05783_consen 104 VVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVL 183 (472)
T ss_pred EEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccccc
Confidence 8889999998654 35555554420 00 0
Q ss_pred ----------CCCCcEEEEEeCCCCCC----CCc-------CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 106 ----------SENVNKLLVGNKCDLTD----KKV-------VSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 106 ----------~~~~p~iiv~nK~D~~~----~~~-------~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
+-++|++||++|+|... ... ...+-++.+|..+|+.++.+|++...+++-++.+|.+.+
T Consensus 184 lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 184 LPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred CCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 00379999999999742 111 122347778889999999999999999999999988887
Q ss_pred HH
Q 043946 165 KN 166 (198)
Q Consensus 165 ~~ 166 (198)
..
T Consensus 264 ~~ 265 (472)
T PF05783_consen 264 YG 265 (472)
T ss_pred cc
Confidence 65
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=7.2e-12 Score=93.42 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=101.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCcccceeeeEEEE--E------------E----EC------CeEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD---SYLDSYISTIGVDFKIRT--V------------E----QD------GKTVKLQ 55 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~--~------------~----~~------~~~~~~~ 55 (198)
.++|..+|....|||||.++|.+- +.+++....++....... + . .+ .-...+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 478999999999999999999642 222222222111110000 0 0 00 1123578
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--CCHHHHHH
Q 043946 56 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV--VSYETAKA 133 (198)
Q Consensus 56 i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~ 133 (198)
|.|.||++-...-..+-..-.|++++|+.++.+-.--...+.+-.+.-+. -..++++-||+|+...+. ..++++++
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk~ 167 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIKE 167 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHHH
Confidence 99999998654333333344799999999987433222233333333332 257888999999976432 23455666
Q ss_pred HHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 134 FADEI---GIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 134 ~~~~~---~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
|.+-. +++++++||..+.||+-+++.|.+.+..
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 65533 4699999999999999999998887754
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.31 E-value=2.1e-11 Score=89.19 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=67.3
Q ss_pred EEEEEEeCCCcccc------cccccccc--cCccEEEEEEECCCh---hhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 52 VKLQIWDTAGQERF------RTITSSYY--RGAHGIIIVYDVTDQ---ESFN-NVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 52 ~~~~i~D~~g~~~~------~~~~~~~~--~~~d~~i~v~d~~~~---~s~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
+.+.++||||+-+. ..+....+ .---++++|+|...- ..|- ++...-..+ ...+.|+|++.||.|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil---yktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL---YKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH---HhccCCeEEEEeccc
Confidence 56889999996432 11221222 223577788886542 2221 222222222 224799999999999
Q ss_pred CCCCCcC-----CHHHHHHHH--------------------HH-hCCcEEEEeccCCCCHHHHHHHHHHHHHHhhhc
Q 043946 120 LTDKKVV-----SYETAKAFA--------------------DE-IGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 120 ~~~~~~~-----~~~~~~~~~--------------------~~-~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~ 170 (198)
+.+.... ..+..++.. .. .++..+-+|+.+|.|++++|..+-+.+.++...
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 9753211 000000000 01 136789999999999999999998877665443
No 310
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.31 E-value=2.7e-10 Score=82.46 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc-------cccccccccccCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE-------RFRTITSSYYRGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~ 76 (198)
-||+++|.|++|||||+..+...+-........+.+...-.+..++ -.+++.|.||.- ..........+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence 4799999999999999999886433222223334455555666666 578899999942 2234455667889
Q ss_pred cEEEEEEECCChhhHH-HHHHHHHHH-----------------------------------------HHh----------
Q 043946 77 HGIIIVYDVTDQESFN-NVKQWLNEI-----------------------------------------DRY---------- 104 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~-~~~~~~~~~-----------------------------------------~~~---------- 104 (198)
|.++.|.|++..+.-. -++..++.+ .++
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence 9999999998644321 122222221 000
Q ss_pred --------------cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 105 --------------ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 105 --------------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
...-++++.|-||+|. ++.+++.++++.-+. +-+|.....|++.+++.|++.+.
T Consensus 221 eD~t~DdfIDvi~gnr~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 221 EDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred cCCChHHHHHHHhccceEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 0011456788888884 578888888877665 44577888899999999998875
No 311
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.30 E-value=3.5e-11 Score=91.98 Aligned_cols=103 Identities=15% Similarity=0.137 Sum_probs=64.1
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCH--H
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSY--E 129 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~--~ 129 (198)
+.+.|+||+|.... .......+|.++++.+....+. +......+ .++|.++++||+|+........ .
T Consensus 127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~e---l~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGDD---LQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccHH---HHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence 66889999985422 2235667888888865443332 22222222 1468899999999865431110 0
Q ss_pred ----HHHHHHH---HhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 130 ----TAKAFAD---EIGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 130 ----~~~~~~~---~~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
....+.. .+..+++++|++++.|+++++++|.+...
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0011111 12246899999999999999999988754
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.30 E-value=8.3e-11 Score=96.10 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=72.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-cceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cc---cc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIS-TIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR-------TI---TS 70 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~ 70 (198)
+.++|+|+|.+|+||||++|.|++......... ..+...........+ ..+.++||||..... .+ ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 568999999999999999999998654332211 112222222233444 678999999965431 11 11
Q ss_pred cccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 043946 71 SYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN--VNKLLVGNKCDLTD 122 (198)
Q Consensus 71 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~~ 122 (198)
.++. ..|++|||..++.......-..++..+....+.+ ..+|||+|..|...
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 4799999988763222112224445554444422 57899999999864
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.9e-10 Score=87.98 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=60.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC----------------eEEEEEEEeCCCc----
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG----------------KTVKLQIWDTAGQ---- 62 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~---- 62 (198)
.+++.|+|.||||||||+|++..........|..+++...-...+.. ....+.++|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 57999999999999999999997665444555555555444433221 2246899999982
Q ss_pred ---ccccccccccccCccEEEEEEECC
Q 043946 63 ---ERFRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 63 ---~~~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
+........-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 344455555678899999999975
No 314
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=8.4e-11 Score=91.26 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD---SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
-|+-.|.-..|||||++.+.+. ..++.-...++.+.....+..+. ..+.++|.||++++-......+...|.++|
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4678899999999999999863 33444445555555544444444 589999999999887777777788999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH---hCCcEEEEeccCCCCHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADE---IGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~S~~~~~~i~~~~~ 158 (198)
|+++++.-.... -+.+..+... + ....++|++|+|..+...+ .+.++++... -.++++.+|+.+|.||+++.+
T Consensus 80 vV~~deGl~~qt-gEhL~iLdll-g-i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQT-GEHLLILDLL-G-IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhh-HHHHHHHHhc-C-CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999975322211 2222223222 2 2345899999998764321 2223333322 246889999999999999999
Q ss_pred HHHHHHH
Q 043946 159 AMTADIK 165 (198)
Q Consensus 159 ~l~~~~~ 165 (198)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9988874
No 315
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.25 E-value=4.5e-11 Score=85.59 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=76.4
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHH-----HHhC
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFA-----DEIG 139 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 139 (198)
+...+..+++++|++++|+|+.++.. .|...+... ..+.|+++|+||+|+.... ...+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence 46677889999999999999987542 122222222 2368999999999986432 2333344333 2233
Q ss_pred C---cEEEEeccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 140 I---PFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 140 ~---~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
. .++++||+++.|+++++++|.+.+. .+..+-+.+.++.+|++
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~------------~~~~~~~~G~~nvGKSt 142 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK------------KGGDVYVVGATNVGKST 142 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh------------cCCcEEEEcCCCCCHHH
Confidence 3 6899999999999999999988764 12346677777777765
No 316
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.25 E-value=4.8e-10 Score=85.85 Aligned_cols=129 Identities=23% Similarity=0.298 Sum_probs=88.9
Q ss_pred eEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-------hHHHHHHHHHHHHHhcC----CC
Q 043946 40 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-------SFNNVKQWLNEIDRYAS----EN 108 (198)
Q Consensus 40 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~~----~~ 108 (198)
.....+.+.+ ..+.++|++|+..-...|.+++.+++++|||+++++-+ ....+.+-+..+..... .+
T Consensus 185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 4444555555 78899999999988899999999999999999987522 12333333333443333 46
Q ss_pred CcEEEEEeCCCCCCCC---------------cCCHHHHHHHHHHh----------CCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 109 VNKLLVGNKCDLTDKK---------------VVSYETAKAFADEI----------GIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 109 ~p~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~~----------~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
.++|+++||.|+..+. ....+++..+.... .+-+..+.|.+..+|+.+|..+.+.
T Consensus 263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 8999999999995310 12333443333221 2345677899999999999999998
Q ss_pred HHHhhhc
Q 043946 164 IKNRMAS 170 (198)
Q Consensus 164 ~~~~~~~ 170 (198)
+.+....
T Consensus 343 Ii~~nlk 349 (354)
T KOG0082|consen 343 IIQNNLK 349 (354)
T ss_pred HHHHHHH
Confidence 8875544
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.22 E-value=2e-10 Score=84.53 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=42.8
Q ss_pred EEEEEEeCCCccc-------------cccccccccc-CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 043946 52 VKLQIWDTAGQER-------------FRTITSSYYR-GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK 117 (198)
Q Consensus 52 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK 117 (198)
..+.++|+||... ...+...|+. ..+++++|+|+...-.-....... ......+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia---~~ld~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA---KEVDPQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH---HHHHHcCCcEEEEEEC
Confidence 3588999999642 1223455666 456999999886532211112222 2223347899999999
Q ss_pred CCCCCC
Q 043946 118 CDLTDK 123 (198)
Q Consensus 118 ~D~~~~ 123 (198)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 318
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.22 E-value=7.6e-11 Score=88.40 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=40.2
Q ss_pred CcEEEEEeCCCCCCCCcCCHHHHHHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 109 VNKLLVGNKCDLTDKKVVSYETAKAFADEI--GIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 109 ~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
.+-++|+||+|+........+...+..+.. .++++++|+++|.|++++++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 466999999999653222333444444443 4789999999999999999999763
No 319
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.21 E-value=1.8e-11 Score=91.47 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc--------cccccccccC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF--------RTITSSYYRG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~ 75 (198)
.-|.|+|..|+||||||++|......+...-..+.+........+.+ -.+.+.||.|.-+- ......-...
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 35899999999999999999976655544444444444444445443 35778899984221 1112233467
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCC
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN----KLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSL 151 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 151 (198)
+|.++-|.|++.|+--......+..+....-...| ++=|-||+|..... . -..+++ .+.+|+.+|.
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~-------e~E~n~--~v~isaltgd 327 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-V-------EEEKNL--DVGISALTGD 327 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-C-------ccccCC--ccccccccCc
Confidence 89999999999987544444454445444322223 34456777764321 1 111223 4788999999
Q ss_pred CHHHHHHHHHHHHHHhhh
Q 043946 152 NVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~~~~ 169 (198)
|++++...+-..+..-..
T Consensus 328 gl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 328 GLEELLKAEETKVASETT 345 (410)
T ss_pred cHHHHHHHHHHHhhhhhe
Confidence 999999998888765443
No 320
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.15 E-value=1.4e-10 Score=80.38 Aligned_cols=93 Identities=24% Similarity=0.264 Sum_probs=63.1
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEe
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (198)
.+..+.+.++|++++|+|+.++..... ..+...+ ...+.|+++|+||+|+.+... .+....+....+.+++.+|
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~---~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iS 77 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV---LELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH---HhCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEEE
Confidence 456677788999999999987543211 1122222 123689999999999853211 1122233344567899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 043946 147 AKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~ 165 (198)
++++.|++++++.|.+.+.
T Consensus 78 a~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 78 AKERLGTKILRRTIKELAK 96 (156)
T ss_pred ccccccHHHHHHHHHHHHh
Confidence 9999999999999987764
No 321
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.6e-10 Score=82.22 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=91.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc----------------CCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD----------------DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
..+|..+|.-+.|||||..++.. ...+++....+++.....+++... ..+-..|+||+.+|-
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--rhyahVDcPGHaDYv 89 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--RHYAHVDCPGHADYV 89 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC--ceEEeccCCChHHHH
Confidence 47899999999999999887631 112333334444444445555554 567778999999987
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCcC---CHHHHHHHHHHhCC--
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTDKKVV---SYETAKAFADEIGI-- 140 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~~~---~~~~~~~~~~~~~~-- 140 (198)
.....-.-++|+.|+|+.+.|....+.-+. +-..+ .-+.|. ++++||+|+.++.+. -..+++++...++.
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEH-iLlar---qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g 165 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREH-ILLAR---QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG 165 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhh-hhhhh---hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 766666778999999999998433221111 11111 225654 556699999875432 12356677777774
Q ss_pred ---cEEEEeccC
Q 043946 141 ---PFMETSAKD 149 (198)
Q Consensus 141 ---~~~~~S~~~ 149 (198)
|++.-|++.
T Consensus 166 d~~Pii~gSal~ 177 (394)
T COG0050 166 DDTPIIRGSALK 177 (394)
T ss_pred CCcceeechhhh
Confidence 567767654
No 322
>PRK12289 GTPase RsgA; Reviewed
Probab=99.11 E-value=2.8e-10 Score=88.27 Aligned_cols=90 Identities=14% Similarity=0.204 Sum_probs=65.5
Q ss_pred cccccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEe
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (198)
+....+.++|.+++|+|+.++. ....+..|+..+. ..++|+++|+||+|+..... .+........++..++.+|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence 3445688999999999998765 3445566665442 24789999999999964321 1222334456788899999
Q ss_pred ccCCCCHHHHHHHHHH
Q 043946 147 AKDSLNVEQAFMAMTA 162 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~ 162 (198)
|+++.|+++++++|..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 9999999999998854
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.10 E-value=2.6e-09 Score=79.40 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=65.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETA 131 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 131 (198)
+.+.|++|.|-.... -.....+|.+++|.=+.-.+.++.+..-+ .+. --++|+||.|...... ...++
T Consensus 144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~Gi---mEi-----aDi~vINKaD~~~A~~-a~r~l 211 (323)
T COG1703 144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGI---MEI-----ADIIVINKADRKGAEK-AAREL 211 (323)
T ss_pred CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhh---hhh-----hheeeEeccChhhHHH-HHHHH
Confidence 457888887743322 22345589999988776666554444432 222 2388999999654321 11111
Q ss_pred HHHHH---------HhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhh
Q 043946 132 KAFAD---------EIGIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 132 ~~~~~---------~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
..... .+.-+++.+||.+|+|++++++.+.+...-...
T Consensus 212 ~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 212 RSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred HHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 21111 123579999999999999999999877654333
No 324
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=9.3e-10 Score=89.28 Aligned_cols=117 Identities=22% Similarity=0.287 Sum_probs=81.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-----------------cceeeeEEEEE---EECCeEEEEEEEeCC
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIS-----------------TIGVDFKIRTV---EQDGKTVKLQIWDTA 60 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~i~D~~ 60 (198)
+...++.++|+-++|||+|..-|...+-+.-... ...+.....++ ...++.+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 3567899999999999999999975433221110 11111111111 124556779999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
|+-.+.......+..+|++++|+|+...-.+.. -..+......+.|+++|+||+|..
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt----Er~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT----ERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeH----HHHHHHHHhccCcEEEEEehhHHH
Confidence 999999889999999999999999987655332 222333344579999999999963
No 325
>PRK12288 GTPase RsgA; Reviewed
Probab=99.06 E-value=1e-09 Score=85.14 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=65.1
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-CHHHHHHHHHHhCCcEEEEeccCCCC
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-SYETAKAFADEIGIPFMETSAKDSLN 152 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~~~~ 152 (198)
.++|.+++|++.....++..+..|+..... .++|+++|+||+|+...... ...+........+.+++++||+++.|
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 458999999999877788888888765532 36899999999999643211 11223334456678999999999999
Q ss_pred HHHHHHHHHH
Q 043946 153 VEQAFMAMTA 162 (198)
Q Consensus 153 i~~~~~~l~~ 162 (198)
+++++++|..
T Consensus 196 ideL~~~L~~ 205 (347)
T PRK12288 196 LEELEAALTG 205 (347)
T ss_pred HHHHHHHHhh
Confidence 9999998854
No 326
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.05 E-value=2.4e-10 Score=83.66 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=61.6
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETA 131 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 131 (198)
+.+.|++|.|-... ......-+|.+++|.-+.-.+.++.+..-+- + +.-++|+||.|.+..+. ...++
T Consensus 122 ~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGim---E-----iaDi~vVNKaD~~gA~~-~~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIM---E-----IADIFVVNKADRPGADR-TVRDL 189 (266)
T ss_dssp -SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHH---H-----H-SEEEEE--SHHHHHH-HHHHH
T ss_pred CCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhh---h-----hccEEEEeCCChHHHHH-HHHHH
Confidence 45778888763221 2224556899999999877665443333222 1 23489999999654322 12333
Q ss_pred HHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 132 KAFADEI-------GIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 132 ~~~~~~~-------~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
+...... .-+++.+||.++.|++++++.|.+....
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3333321 2489999999999999999998775543
No 327
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.05 E-value=5.9e-09 Score=79.53 Aligned_cols=139 Identities=21% Similarity=0.320 Sum_probs=85.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC----------CcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc----
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS----------YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT---- 67 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---- 67 (198)
..+.|+++|++|.|||||+|.|++...... ..++.........+.-++..+.++++||||..+.-.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999987643222 223444555556666677788999999999332100
Q ss_pred ----------------------ccc--ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 68 ----------------------ITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 68 ----------------------~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
.+. ..=.++|+++|.+.++.. .+..+ .+..+.+. ...+-+|=|+.|+|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~--DIe~Mk~l-s~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPL--DIEAMKRL-SKRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHH--HHHHHHHH-hcccCeeeeeeccccCCH
Confidence 011 112456888888876642 11111 11122222 224667788899998643
Q ss_pred CcC--CHHHHHHHHHHhCCcEEE
Q 043946 124 KVV--SYETAKAFADEIGIPFME 144 (198)
Q Consensus 124 ~~~--~~~~~~~~~~~~~~~~~~ 144 (198)
.+. -.+.+.+....+++++|.
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC
Confidence 322 234566677777887774
No 328
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.04 E-value=1.3e-08 Score=79.17 Aligned_cols=127 Identities=21% Similarity=0.226 Sum_probs=86.7
Q ss_pred eEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHHh-cCCC
Q 043946 40 FKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRY-ASEN 108 (198)
Q Consensus 40 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~ 108 (198)
+....+.+++ ..+.+||.+|+......|..++.+++++|||+|+++- ..+......+..+... .-.+
T Consensus 174 i~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~ 251 (342)
T smart00275 174 IQETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFAN 251 (342)
T ss_pred eEEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccC
Confidence 4445566666 7789999999999999999999999999999999963 2333333333333221 2257
Q ss_pred CcEEEEEeCCCCCCCC---------------cCCHHHHHHHHHH-----h------CCcEEEEeccCCCCHHHHHHHHHH
Q 043946 109 VNKLLVGNKCDLTDKK---------------VVSYETAKAFADE-----I------GIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 109 ~p~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
.|+++++||.|+.... ....+.+..+... . .+-...++|.+..++..+|+.+.+
T Consensus 252 ~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~ 331 (342)
T smart00275 252 TSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKD 331 (342)
T ss_pred CcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHH
Confidence 8999999999984210 0123333333221 1 133567889999999999999888
Q ss_pred HHHHhh
Q 043946 163 DIKNRM 168 (198)
Q Consensus 163 ~~~~~~ 168 (198)
.+.+..
T Consensus 332 ~I~~~~ 337 (342)
T smart00275 332 IILQRN 337 (342)
T ss_pred HHHHHH
Confidence 887654
No 329
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.7e-09 Score=76.97 Aligned_cols=163 Identities=19% Similarity=0.256 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCccEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT---ITSSYYRGAHGII 80 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~~i 80 (198)
.+|++||...+||||+- ..+..+.++...-....+.....-.+.+.-+.+.+||.||+-.+-. -....++.+-++|
T Consensus 28 p~ilLMG~rRsGKsSI~-KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQ-KVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhh-heeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 57999999999999955 4444444433222211111111112233446799999999765421 2345678999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCCCCcCC------HHHHHHH-----HHHhCCcEEEEec
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTDKKVVS------YETAKAF-----ADEIGIPFMETSA 147 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~-----~~~~~~~~~~~S~ 147 (198)
||+|+.+. ....+..+...+.+. .++++.+=+++.|.|...++... .+....- .....+.|+.+|.
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99999763 234444444333332 22467788899999975432110 0111111 1122356788888
Q ss_pred cCCCCHHHHHHHHHHHHHHhhh
Q 043946 148 KDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
.+. .|-|+|..+.+.+..+.+
T Consensus 186 yDH-SIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YDH-SIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cch-HHHHHHHHHHHHHhhhch
Confidence 776 477888888877765443
No 330
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.02 E-value=1.4e-09 Score=75.25 Aligned_cols=114 Identities=21% Similarity=0.158 Sum_probs=70.2
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHH
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~ 156 (198)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+...... .+.+..+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988754321 12221 1222346899999999998532111 11122232333456899999999999999
Q ss_pred HHHHHHHHHHhhhcCc-CCCCCCCCccccCCCCCCCCCC
Q 043946 157 FMAMTADIKNRMASQP-AMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 157 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
++.|.+...+...... .........+.+.+.++.+|++
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKst 115 (155)
T cd01849 77 ESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSS 115 (155)
T ss_pred HHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHH
Confidence 9998776533221111 1112345667788888888875
No 331
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.01 E-value=2.8e-09 Score=77.65 Aligned_cols=151 Identities=22% Similarity=0.189 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc-------cccccccccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE-------RFRTITSSYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-------~~~~~~~~~~~~~d 77 (198)
++.++|.|++||||++..|.+..-.......++.....-.....+ -++++.|.||.- ..........+.|+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 789999999999999999986432211111122222222233344 468899999932 23345566778899
Q ss_pred EEEEEEECCChhhHHHHHH-HHHH-------------------------------------HHHh---------------
Q 043946 78 GIIIVYDVTDQESFNNVKQ-WLNE-------------------------------------IDRY--------------- 104 (198)
Q Consensus 78 ~~i~v~d~~~~~s~~~~~~-~~~~-------------------------------------~~~~--------------- 104 (198)
.+++|.|+..|-+-..+.+ .++- +.++
T Consensus 139 li~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~ 218 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATA 218 (358)
T ss_pred EEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcch
Confidence 9999999766544332221 1111 0000
Q ss_pred ---------cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 105 ---------ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 105 ---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
...-+|.+.++||+|... .+++.-. +.+ ..+++||.+++|++++++.+.+.+.
T Consensus 219 DdLIdvVegnr~yVp~iyvLNkIdsIS-----iEELdii---~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 219 DDLIDVVEGNRIYVPCIYVLNKIDSIS-----IEELDII---YTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhccCceeeeeeeeecccceee-----eecccee---eeccceeecccccccchHHHHHHHhhcch
Confidence 001267788888888642 2222211 122 4688999999999999999988774
No 332
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.99 E-value=1.8e-09 Score=84.57 Aligned_cols=113 Identities=27% Similarity=0.330 Sum_probs=80.1
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHH----HHHHH
Q 043946 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAK----AFADE 137 (198)
Q Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~----~~~~~ 137 (198)
++.+..+...+...++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+.+. ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 4567777888889999999999997754 224444444433 5799999999998643 23334444 34556
Q ss_pred hCC---cEEEEeccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 138 IGI---PFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 138 ~~~---~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
.++ .++.+||+++.|++++|+.|.+... ...+.+.+.++.+||+
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~-------------~~~v~~vG~~nvGKSt 169 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKARN-------------KKDVYVVGVTNVGKSS 169 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHHhC-------------CCeEEEECCCCCCHHH
Confidence 666 4899999999999999999865410 1466677777777765
No 333
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.7e-08 Score=77.51 Aligned_cols=157 Identities=19% Similarity=0.277 Sum_probs=93.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCC---------CcccceeeeEEEEEEECCeEEEEEEEeCCCcccc--------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDS---------YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-------- 65 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------- 65 (198)
.+.++++|++|.|||||||.|....+... ...+.........+.-+|..+++++.||||..+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 58899999999999999999876533221 1223344455555666777889999999993221
Q ss_pred -----------------cccccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC
Q 043946 66 -----------------RTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV 126 (198)
Q Consensus 66 -----------------~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 126 (198)
..+....+ .++|+++|.+.+... .+..+ .+..+... ...+.+|-|+-|+|.....+.
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~--Di~~Mk~l-~~~vNiIPVI~KaD~lT~~El 176 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPL--DIEFMKKL-SKKVNLIPVIAKADTLTKDEL 176 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHh--hHHHHHHH-hccccccceeeccccCCHHHH
Confidence 01111222 367888888886642 11111 11112222 235677888899998654322
Q ss_pred --CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 127 --SYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 127 --~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
-...+.+.+..++++++.-..... ++.+....+.+..
T Consensus 177 ~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~ 215 (366)
T KOG2655|consen 177 NQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKS 215 (366)
T ss_pred HHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhh
Confidence 245566677778887776555544 4444333444443
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.6e-09 Score=75.13 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=69.6
Q ss_pred cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCC
Q 043946 72 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSL 151 (198)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 151 (198)
.+..+|++++|+|+.++..- ........+... ..+.|+++|+||+|+...... ...+..+.+.+....+.+|++++.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 46789999999999886321 112222233322 335899999999999533211 111222222222235789999999
Q ss_pred CHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 152 NVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
|+++++++|.+..... .......+...+.++.+||+
T Consensus 82 ~~~~L~~~l~~~~~~~-------~~~~~~~v~~~G~~nvGKSt 117 (157)
T cd01858 82 GKGSLIQLLRQFSKLH-------SDKKQISVGFIGYPNVGKSS 117 (157)
T ss_pred cHHHHHHHHHHHHhhh-------ccccceEEEEEeCCCCChHH
Confidence 9999999987654321 01123455578888888876
No 335
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.98 E-value=2.3e-09 Score=85.26 Aligned_cols=158 Identities=24% Similarity=0.407 Sum_probs=116.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+|+.|+|..++|||+|+.+++.+.+.....+.- ....+++..++....+.+.|-+|.- ...|-..+|++|||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 3789999999999999999999888866544433 3556777788888888888988732 23355668999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC--CCcCCHHHHHHHH-HHhCCcEEEEeccCCCCHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTD--KKVVSYETAKAFA-DEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~--~~~~~~~~~~~~~-~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
|...+.+++..+......+..+.. ..+|+++++++.-... .+.+......+++ +...+.++++++..|.+++.+|.
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 999999999888887766654433 4577777776543321 2223344444443 44457899999999999999999
Q ss_pred HHHHHHHHh
Q 043946 159 AMTADIKNR 167 (198)
Q Consensus 159 ~l~~~~~~~ 167 (198)
.+...+...
T Consensus 183 ~~~~k~i~~ 191 (749)
T KOG0705|consen 183 EVAQKIVQL 191 (749)
T ss_pred HHHHHHHHH
Confidence 998877654
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.98 E-value=3.3e-09 Score=80.62 Aligned_cols=88 Identities=17% Similarity=0.223 Sum_probs=66.6
Q ss_pred cccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEecc
Q 043946 70 SSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAK 148 (198)
Q Consensus 70 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 148 (198)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. ............+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 33578899999999999887 77777777766544 368999999999996431 1122233344567899999999
Q ss_pred CCCCHHHHHHHHHH
Q 043946 149 DSLNVEQAFMAMTA 162 (198)
Q Consensus 149 ~~~~i~~~~~~l~~ 162 (198)
++.|+++++.+|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999988753
No 337
>PRK00098 GTPase RsgA; Reviewed
Probab=98.95 E-value=4.3e-09 Score=80.41 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=63.3
Q ss_pred cccCccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCC
Q 043946 72 YYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDS 150 (198)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 150 (198)
...++|.+++|+|+.++.+... +..|+..+.. .++|+++|+||+|+.+... ..+......+..+.+++++|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3588999999999988765443 4566655533 3689999999999963221 122334455567889999999999
Q ss_pred CCHHHHHHHHH
Q 043946 151 LNVEQAFMAMT 161 (198)
Q Consensus 151 ~~i~~~~~~l~ 161 (198)
.|++++++.|.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998873
No 338
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.94 E-value=9.2e-09 Score=74.18 Aligned_cols=145 Identities=20% Similarity=0.263 Sum_probs=85.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCC---------CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc-------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLD---------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF------- 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------- 65 (198)
..++|+|+|.+|.|||||+|.|...+... ....+.........+.-++...+++++||||..++
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 45899999999999999999997543322 11223344445556667787889999999994322
Q ss_pred -------------------ccccccccc--CccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-
Q 043946 66 -------------------RTITSSYYR--GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTD- 122 (198)
Q Consensus 66 -------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~- 122 (198)
...+...+. ++++++|.+.++. .++..+ ..++..+.+ -.-++-|+.|.|-..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccH
Confidence 111222233 3567777776653 222111 122222322 245566778999642
Q ss_pred -CCcCCHHHHHHHHHHhCCcEEEEeccCCC
Q 043946 123 -KKVVSYETAKAFADEIGIPFMETSAKDSL 151 (198)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 151 (198)
++..=.+.+.+-..++++.+++-.+.+-.
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded 229 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDED 229 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 22112345666677788888876665543
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.92 E-value=3.7e-09 Score=72.05 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (198)
+++++|.+|+|||||+|+|.+..... .....+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 78999999999999999999766532 222223344445555554 5799999995
No 340
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.3e-09 Score=79.40 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=74.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccccee-eeEEEEEEE------CCe-------------------------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGV-DFKIRTVEQ------DGK------------------------- 50 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~------~~~------------------------- 50 (198)
..-|+++|.-+.||||||+.|+...++..+.-.-++ ++-...+.- +|.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 456899999999999999999988776533322111 111111111 110
Q ss_pred --------EEEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE
Q 043946 51 --------TVKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK 111 (198)
Q Consensus 51 --------~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ 111 (198)
.-.+.++|+||.-+ |.....-|..++|.++++||+..-+--+++...+..+ .+..-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL---KGHEDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh---hCCccee
Confidence 01378999999422 2222333678999999999987654444555555444 4445678
Q ss_pred EEEEeCCCCCCC
Q 043946 112 LLVGNKCDLTDK 123 (198)
Q Consensus 112 iiv~nK~D~~~~ 123 (198)
-||+||.|..+.
T Consensus 215 RVVLNKADqVdt 226 (532)
T KOG1954|consen 215 RVVLNKADQVDT 226 (532)
T ss_pred EEEeccccccCH
Confidence 889999998643
No 341
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.90 E-value=4.8e-09 Score=73.72 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=38.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (198)
.++++++|.||+|||||+|+|.+...... .+..+++.....+..+. .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~-~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV-GATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee-cCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 47999999999999999999997554221 22233344445554443 578999998
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.90 E-value=2.7e-09 Score=78.40 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=88.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-cceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIS-TIGVDFKIRTVEQDGKTVKLQIWDTAGQE----------RFRTITS 70 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 70 (198)
...++++.|.+|+|||+|+|-++..+....... ..+.+.....+.++. .+.+.|.||-. ++.....
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhHH
Confidence 457899999999999999999986543332222 444444445555553 68888999921 1222233
Q ss_pred ccccC---ccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc----CCHHHHHHHHHH----
Q 043946 71 SYYRG---AHGIIIVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV----VSYETAKAFADE---- 137 (198)
Q Consensus 71 ~~~~~---~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~---- 137 (198)
.|+.+ ---+.+++|++-+-. -.....|.. ..++|+.+|+||+|...... .....+....+.
T Consensus 212 ~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g------e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVDASVPIQPTDNPEIAWLG------ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHhhhhhheeeeeeeccCCCCCCChHHHHHHh------hcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 33322 234555667664321 112233332 34899999999999753211 111222221111
Q ss_pred ---hCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 138 ---IGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 138 ---~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
...+.+.+|+.++.|+++++-.+.+
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 1235567999999999998766544
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.90 E-value=3e-09 Score=74.88 Aligned_cols=120 Identities=19% Similarity=0.099 Sum_probs=74.8
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEe
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (198)
......+.++|++++|+|+.++..... ..+.. .. .+.|+++|+||+|+.+... .....++.+..+..++.+|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~---~~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~iS 82 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEK---IL--GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCC-hhhHh---Hh--cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEEE
Confidence 344567789999999999987543211 11111 11 2479999999999853211 1122223333345689999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 147 AKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
++++.|++++.+.|...+............+....+..-+.+..+|++
T Consensus 83 a~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKst 130 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKST 130 (171)
T ss_pred CCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHH
Confidence 999999999999998876432222222223333466677777777765
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.86 E-value=9.7e-09 Score=71.24 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=36.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (198)
.++|+++|.+|||||||+|+|.+..... ..+..+.+.....+..+. .+.++||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 4678999999999999999998754322 122223333334444332 367889998
No 345
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.85 E-value=3.1e-08 Score=76.03 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=94.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------------cccceeeeEEEEEEECCe------------------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSY--------------ISTIGVDFKIRTVEQDGK------------------ 50 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~------------------ 50 (198)
.+.+.++|..+.|||||.-.|..+..+.-. ....+.+.....+-+++.
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 567899999999999999888654432211 111222223333333221
Q ss_pred ---EEEEEEEeCCCccccc--ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 51 ---TVKLQIWDTAGQERFR--TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 51 ---~~~~~i~D~~g~~~~~--~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.-+.+.|+.|++.+. .++..+-++.|..++++.+++.-+-. ..+.+..+.. -+.|++++++|+|+..+..
T Consensus 197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcHHH
Confidence 1337889999999774 34455667899999999998864421 1223332222 2689999999999975432
Q ss_pred CC--HHHHHHHHHH----------------------hC---CcEEEEeccCCCCHHHHHHHH
Q 043946 126 VS--YETAKAFADE----------------------IG---IPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 126 ~~--~~~~~~~~~~----------------------~~---~~~~~~S~~~~~~i~~~~~~l 160 (198)
+. .+++.+..+. .+ +|++.+|+.+|.|++-+.+.+
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 21 1222222221 11 478999999999987655543
No 346
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.4e-08 Score=78.70 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=81.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc-cceeee----------------------------------------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIS-TIGVDF---------------------------------------- 40 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~---------------------------------------- 40 (198)
..+||+|.|..++||||++|+++..+..+...- ++.+-.
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 468999999999999999999976544332211 110000
Q ss_pred --EEEEEEECCeE-----EEEEEEeCCCcc---cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc
Q 043946 41 --KIRTVEQDGKT-----VKLQIWDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN 110 (198)
Q Consensus 41 --~~~~~~~~~~~-----~~~~i~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 110 (198)
....+-++... -.+.+.|.||.+ ....-...+...+|++|||.++.+.-...+-. ++ ......+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff---~~vs~~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FF---HKVSEEKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HH---HHhhccCCc
Confidence 00001111110 025788999844 34444566778899999999998765432222 22 222222334
Q ss_pred EEEEEeCCCCCCCCcCCHHHHHHHHHHhC------C--cEEEEecc
Q 043946 111 KLLVGNKCDLTDKKVVSYETAKAFADEIG------I--PFMETSAK 148 (198)
Q Consensus 111 ~iiv~nK~D~~~~~~~~~~~~~~~~~~~~------~--~~~~~S~~ 148 (198)
+.|+.||+|..-..+...+.+.+....+. + .++.+|++
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 55566899986554444555554433332 1 46788854
No 347
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.84 E-value=2.3e-07 Score=72.48 Aligned_cols=151 Identities=17% Similarity=0.268 Sum_probs=86.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC-----------------CCCCCCc-ccc------eeeeEEEEEEE-CCeEEEEEEEe
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD-----------------SYLDSYI-STI------GVDFKIRTVEQ-DGKTVKLQIWD 58 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~-----------------~~~~~~~-~~~------~~~~~~~~~~~-~~~~~~~~i~D 58 (198)
+=|.|+||..+||||||+||... ..+++.. .++ ........+.+ ++..++++++|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD 97 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID 97 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence 44789999999999999998421 1111110 000 01112223333 46678999999
Q ss_pred CCCcc-------------------ccccc----------ccccc--cCccEEEEEEECCC----hhhHHHH-HHHHHHHH
Q 043946 59 TAGQE-------------------RFRTI----------TSSYY--RGAHGIIIVYDVTD----QESFNNV-KQWLNEID 102 (198)
Q Consensus 59 ~~g~~-------------------~~~~~----------~~~~~--~~~d~~i~v~d~~~----~~s~~~~-~~~~~~~~ 102 (198)
+.|.- +|+.. ....+ +..-++++.-|.+- ++.+..+ +...+.+.
T Consensus 98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk 177 (492)
T PF09547_consen 98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK 177 (492)
T ss_pred ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence 99810 01000 01111 12346666666542 3344333 34555555
Q ss_pred HhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccC--CCCHHHHHHH
Q 043946 103 RYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD--SLNVEQAFMA 159 (198)
Q Consensus 103 ~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~--~~~i~~~~~~ 159 (198)
.. ++|+++++|-.+..... ..+...++..++++++++++... ...|..+|+.
T Consensus 178 ~i---gKPFvillNs~~P~s~e--t~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~ 231 (492)
T PF09547_consen 178 EI---GKPFVILLNSTKPYSEE--TQELAEELEEKYDVPVLPVNCEQLREEDITRILEE 231 (492)
T ss_pred Hh---CCCEEEEEeCCCCCCHH--HHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence 44 89999999998864332 45667778889999998888754 3344444443
No 348
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=2.1e-08 Score=70.60 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=39.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (198)
.++++++|.+|+|||||+|+|.+.... ......+++.....+..+ ..+.+|||||.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 478999999999999999999986653 222222344444545554 35789999994
No 349
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.79 E-value=1.6e-08 Score=76.37 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=63.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC---------------eEEEEEEEeCCCcc---
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG---------------KTVKLQIWDTAGQE--- 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~--- 63 (198)
++++|.|+|.|+||||||+|.|..........|..+++.....+.+.. .+-.++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 468999999999999999999998877777777777776666655432 23468999999832
Q ss_pred ----cccccccccccCccEEEEEEECC
Q 043946 64 ----RFRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 64 ----~~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
........-++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 23333444567899999998864
No 350
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.77 E-value=7.1e-08 Score=85.94 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=69.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCC------CcccceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLDS------YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--------FRTITSS 71 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 71 (198)
.+|+|++|+||||++++- +..++-. ...+.+.+.. ..+.+.. ...++|++|..- ....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 479999999999999876 2222111 1111221222 2233333 356889999321 1123444
Q ss_pred cc---------cCccEEEEEEECCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 72 YY---------RGAHGIIIVYDVTDQ-----E----SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 72 ~~---------~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
++ +..|++|+++|+.+- + ....+...+.++....+...||+++++|+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 43 458999999998652 1 123555666777777777899999999999864
No 351
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.75 E-value=9.2e-08 Score=74.34 Aligned_cols=84 Identities=15% Similarity=0.022 Sum_probs=57.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCe---------------EEEEEEEeCCCccc--
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGK---------------TVKLQIWDTAGQER-- 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-- 64 (198)
.+++.|+|.|++|||||++.|.+... .....|..+.+.....+.++.. ...+.+.|.||...
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 47899999999999999999998665 4333344434444444444331 13578999999432
Q ss_pred -----ccccccccccCccEEEEEEECC
Q 043946 65 -----FRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 65 -----~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
........++++|+++.|++..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2233445678899999999984
No 352
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.74 E-value=4.5e-08 Score=74.48 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=40.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
.++++++|.||||||||+|+|.+...... ....+.+.....+..+. .+.++||||.-
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKT-GNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcccc-CCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 47899999999999999999998654221 22233344444555543 47899999963
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.73 E-value=4.1e-08 Score=74.31 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=39.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (198)
.++++++|.||+|||||+|+|.+...... ....+.+.....+..+. .+.++||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 47899999999999999999997653222 12223344445555543 4789999996
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.73 E-value=4.9e-08 Score=67.61 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (198)
..+++++|.+++|||||+|+|.+.... ...++.+.+.....+..+. .+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 568999999999999999999965432 2334444443333333333 589999998
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.73 E-value=6.7e-08 Score=73.17 Aligned_cols=119 Identities=24% Similarity=0.176 Sum_probs=75.6
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEec
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
.....+..+|++++|+|+.++.+... ......+ .+.|+++|+||+|+.+... .+...+.....+..++.+|+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~iSa 85 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEKGIKALAINA 85 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence 35567889999999999987643211 1111112 2579999999999853211 12222223334567899999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhcC-cCCCCCCCCccccCCCCCCCCCC
Q 043946 148 KDSLNVEQAFMAMTADIKNRMASQ-PAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
+++.|++++++.|.+.+.+..... ..........+-.-+.++.+||+
T Consensus 86 ~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSs 133 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKST 133 (276)
T ss_pred CCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHH
Confidence 999999999999888775533211 11112234556677888888876
No 356
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=2.5e-07 Score=70.14 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc---C-------------CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD---D-------------SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
..+|.-+|....|||||-.++.. . +.+++... +++++...++++-.....-=.|+||+.+|-
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaR--GITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKAR--GITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhc--cceEeeeeeeeeccccccccCCCCchHHHH
Confidence 35788899999999999777631 1 11223233 344444444444333445556999999987
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-C--HHHHHHHHHHhC----
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-S--YETAKAFADEIG---- 139 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~--~~~~~~~~~~~~---- 139 (198)
..-..--.+.|+.|+|+.++|...-+. .+.+-..+. .+. ..+++++||.|+.++.+. . .-+++++...++
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQ-VGV-~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQ-VGV-KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHH-cCC-ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 766667788999999999999543222 222222222 222 457778899999854322 1 234556677776
Q ss_pred -CcEEEEec---cCCCCHH---HHHHHHHHHHHHhhhcCcC
Q 043946 140 -IPFMETSA---KDSLNVE---QAFMAMTADIKNRMASQPA 173 (198)
Q Consensus 140 -~~~~~~S~---~~~~~i~---~~~~~l~~~~~~~~~~~~~ 173 (198)
+|++.-|| +.|.+-+ +....|++.+-++.+.+..
T Consensus 209 ~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R 249 (449)
T KOG0460|consen 209 NTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER 249 (449)
T ss_pred CCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc
Confidence 47777665 4553322 3344555555554444333
No 357
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=3.1e-08 Score=81.64 Aligned_cols=112 Identities=20% Similarity=0.204 Sum_probs=75.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC--C--------------CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY--L--------------DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.=+|+++.+...|||||+..|+...- . .+...+++.... .+..-.+++.+.++|+||+-+|.
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss--~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSS--AISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecc--ccccccCceEEEEecCCCccchh
Confidence 34789999999999999999974321 1 111112222222 22232345889999999999999
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 120 (198)
........-+|++++++|+...-... .+..++..-..+..+++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~q----t~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQ----TYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchh----HHHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999998754422 222222221235678899999994
No 358
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.70 E-value=3.9e-08 Score=66.96 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=51.4
Q ss_pred ccccCccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEecc
Q 043946 71 SYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAK 148 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 148 (198)
..+..+|++++|+|+.++.+.. .+..++. ... .++|+++|+||+|+.+... .....+..+..+..++.+|+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVK---EVD-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hcc-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 4567899999999998875432 3333332 221 3689999999999854321 223444555666789999999
Q ss_pred CCCC
Q 043946 149 DSLN 152 (198)
Q Consensus 149 ~~~~ 152 (198)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 359
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.70 E-value=1.9e-08 Score=69.28 Aligned_cols=59 Identities=24% Similarity=0.217 Sum_probs=34.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC------CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSY------LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.++++|++|||||||+|.|..... .........++.....+.++.. ..++||||...+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 478999999999999999987532 1122223333444455666442 4778999976553
No 360
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.69 E-value=4.3e-08 Score=75.62 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=43.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
.++++|+|.||||||||||+|.+.... ...+..+.+.....+..... +.++||||.-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 478999999999999999999986652 22233356666677766653 8899999953
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.67 E-value=1.2e-07 Score=72.25 Aligned_cols=119 Identities=24% Similarity=0.239 Sum_probs=77.0
Q ss_pred cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEec
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
.....+..+|++++|+|+.++.+... .++... .. +.|+++|+||+|+.+... .+...++....+.+++.+|+
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa 88 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-NKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINA 88 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEEC
Confidence 35567889999999999977643211 111111 12 579999999999853211 12222233344567899999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhhc-CcCCCCCCCCccccCCCCCCCCCC
Q 043946 148 KDSLNVEQAFMAMTADIKNRMAS-QPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
+++.|++++++.|.+.+.+.... ...........+-+-+.++.+||+
T Consensus 89 ~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSs 136 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKST 136 (287)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHH
Confidence 99999999999988877554321 111112344567788888888876
No 362
>PRK13796 GTPase YqeH; Provisional
Probab=98.66 E-value=1.7e-07 Score=73.66 Aligned_cols=111 Identities=24% Similarity=0.329 Sum_probs=71.2
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHH----HHHHhC
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKA----FADEIG 139 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~~~~ 139 (198)
.+...........+.+++|+|+.|.. ..|...+.+... +.|+++|+||+|+... ....+.+.. +++..+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcC
Confidence 34333333333344999999998743 224444544433 5799999999999643 223333333 355556
Q ss_pred C---cEEEEeccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 140 I---PFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 140 ~---~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
+ .++.+||+++.|++++++.|.+... ...+...+.++.+||+
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~~-------------~~~v~vvG~~NvGKST 175 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKYRE-------------GRDVYVVGVTNVGKST 175 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHhcC-------------CCeEEEEcCCCCcHHH
Confidence 5 5899999999999999999866421 1245667777777765
No 363
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.4e-08 Score=78.65 Aligned_cols=129 Identities=18% Similarity=0.218 Sum_probs=90.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC--------CCCC----------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD--------SYLD----------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~--------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
+|.|+..-.+||||.-.|++.- .... +... +.+.....+.++.+.+++.++||||+-+|.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erer--gitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERER--GITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhc--CceeeeeeeecccccceEeeecCCCcceEE
Confidence 6889999999999999987531 1111 1122 333444444444455899999999999999
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP 141 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 141 (198)
....+.++..|+++.|+|++-.-..+.+..|.+ ....++|-+.++||+|..... -...++...+++++.
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an--fe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN--FENAVDSIEEKLGAK 185 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh--hhhHHHHHHHHhCCc
Confidence 889999999999999999987655445555543 223478999999999975432 123455666677763
No 364
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=4.5e-07 Score=69.64 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=89.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc----------------ccc-------eeeeEEEEEEE----------CC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYI----------------STI-------GVDFKIRTVEQ----------DG 49 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----------------~~~-------~~~~~~~~~~~----------~~ 49 (198)
.+|++|+|-..+|||||+-.|..+..+.... .+. +.+..-..+.+ +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 4799999999999999998776443322111 010 11111111111 11
Q ss_pred eEEEEEEEeCCCccccccccccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-
Q 043946 50 KTVKLQIWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV- 126 (198)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~- 126 (198)
...-++++|.+|+..|..-....+. -.|..++|+++...-.. ...+.+..+.. -++|+.++++|+|+.....+
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A---L~iPfFvlvtK~Dl~~~~~~~ 322 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA---LNIPFFVLVTKMDLVDRQGLK 322 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH---hCCCeEEEEEeeccccchhHH
Confidence 2234789999999888654443332 35788899988764332 22333333322 27999999999999754211
Q ss_pred -----------------------CHHHHHHHHHHhC----CcEEEEeccCCCCHHHHHHHH
Q 043946 127 -----------------------SYETAKAFADEIG----IPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 127 -----------------------~~~~~~~~~~~~~----~~~~~~S~~~~~~i~~~~~~l 160 (198)
...++-..++... .|++-+|+.+|+|++-+-..|
T Consensus 323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 1111112222221 478999999999987654443
No 365
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.59 E-value=1.7e-07 Score=64.87 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=36.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (198)
..+++++|.+|+|||||+|.|.+... .....+..+ .....+..+ ..+.++||||
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t--~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT--TSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc--cceEEEEec---CCEEEEECCC
Confidence 46799999999999999999997543 222223322 333334343 2588999998
No 366
>PRK12288 GTPase RsgA; Reviewed
Probab=98.59 E-value=1.4e-07 Score=73.40 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=37.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLD------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
++|+|.+|||||||||+|++..... ....+-.++.....+.+++. ..++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 6899999999999999998653221 11122223444555556532 2488999976654
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.57 E-value=7.4e-08 Score=68.93 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (198)
.+++++|.+|+|||||+|+|.+..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998743
No 368
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.55 E-value=2.1e-06 Score=62.99 Aligned_cols=85 Identities=16% Similarity=0.040 Sum_probs=52.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccceeeeEEEEEEEC---CeEEEEEEEeCCCcccccc------cccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD--SYLDSYISTIGVDFKIRTVEQD---GKTVKLQIWDTAGQERFRT------ITSS 71 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~D~~g~~~~~~------~~~~ 71 (198)
..-|.|+|++++|||+|+|+|.+. .+..... ...++......... +....+.++||+|..+... ....
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~-~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDT-SQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCC-CCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 456899999999999999999987 4432211 11222222222221 1246899999999654322 1222
Q ss_pred cccC--ccEEEEEEECCCh
Q 043946 72 YYRG--AHGIIIVYDVTDQ 88 (198)
Q Consensus 72 ~~~~--~d~~i~v~d~~~~ 88 (198)
.+.. ++.+|+..+....
T Consensus 86 ~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHhCEEEEeccCccc
Confidence 3333 7899988887653
No 369
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=8e-07 Score=71.71 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=76.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
++=++|+|+||+||||||+.|+.+-. ......+ ....++ +.+...+++++++|.+ ...+ .-...-+|+|+++
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~t-k~ti~~i---~GPiTv-vsgK~RRiTflEcp~D--l~~m-iDvaKIaDLVlLl 140 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFT-KQTIDEI---RGPITV-VSGKTRRITFLECPSD--LHQM-IDVAKIADLVLLL 140 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHH-Hhhhhcc---CCceEE-eecceeEEEEEeChHH--HHHH-HhHHHhhheeEEE
Confidence 34577999999999999999975311 0111111 111222 3455578999999943 2211 1223447999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcCCHHHHHH------HHHH-hCCcEEEEeccC
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVVSYETAKA------FADE-IGIPFMETSAKD 149 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~------~~~~-~~~~~~~~S~~~ 149 (198)
+|.+-.-.+.. .++++.+..+ +.| ++-|++..|+...... ...+++ |-.- .|+.+|..|...
T Consensus 141 IdgnfGfEMET-mEFLnil~~H---GmPrvlgV~ThlDlfk~~st-Lr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 141 IDGNFGFEMET-MEFLNILISH---GMPRVLGVVTHLDLFKNPST-LRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eccccCceehH-HHHHHHHhhc---CCCceEEEEeecccccChHH-HHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99876533332 2344444443 555 5667899999754321 222222 2122 257888887654
No 370
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=3.2e-08 Score=73.81 Aligned_cols=115 Identities=13% Similarity=0.172 Sum_probs=71.1
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHH
Q 043946 53 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYET 130 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~ 130 (198)
.+.+.|+||++-...-..+-..-.|++++++..+..-+-....+.+..+.-+.. .+++++-||+|+..+.+. ..++
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L--khiiilQNKiDli~e~~A~eq~e~ 203 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL--KHIIILQNKIDLIKESQALEQHEQ 203 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh--ceEEEEechhhhhhHHHHHHHHHH
Confidence 367899999875533222233345888888877642111111222323333322 578899999999765422 1233
Q ss_pred HHHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHHHhhh
Q 043946 131 AKAFADEI---GIPFMETSAKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 131 ~~~~~~~~---~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
+..|.+.. +++++++||--+.|++-+.++|.+.+.....
T Consensus 204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 44444332 4699999999999999999999887754333
No 371
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=7.3e-06 Score=55.95 Aligned_cols=147 Identities=20% Similarity=0.263 Sum_probs=81.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCC-Ccccc---------------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTA-GQERF--------------- 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~~--------------- 65 (198)
..+||.|-|+|||||||++.++...-....+ .. ..+...++.-++...-+.+.|+. |...+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-KV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-ee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 4689999999999999999988742211111 11 12445566677777778888887 32111
Q ss_pred ----------cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHH
Q 043946 66 ----------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFA 135 (198)
Q Consensus 66 ----------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 135 (198)
.......+..+|++|+ |=--+-. .....+...+......+.|++.++.+.+.. + -.++++
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpME-lks~~f~~~ve~vl~~~kpliatlHrrsr~-P---~v~~ik--- 150 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPME-LKSKKFREAVEEVLKSGKPLIATLHRRSRH-P---LVQRIK--- 150 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchh-hccHHHHHHHHHHhcCCCcEEEEEecccCC-h---HHHHhh---
Confidence 0111223344676654 3221111 111345566666666788999888877641 1 122222
Q ss_pred HHhCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 136 DEIGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 136 ~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
..+--+.. .+..|=+.++..+...+.
T Consensus 151 -~~~~v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 151 -KLGGVYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred -hcCCEEEE---EccchhhHHHHHHHHHhc
Confidence 22322332 555555577777776654
No 372
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.50 E-value=2.9e-07 Score=68.47 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=36.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC------CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLD------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
.++++|++|||||||+|+|.+..... ....+..++.....+...+ ..++||||...+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 57899999999999999998643211 1111222344444455543 268899997554
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=98.46 E-value=4e-07 Score=70.91 Aligned_cols=57 Identities=26% Similarity=0.233 Sum_probs=36.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCC------CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLD------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
++|+|++|||||||||+|....... ....+-.++.....+..++. ..++||||...+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 7999999999999999998643221 11111223444455556433 268899996443
No 374
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.42 E-value=4.9e-07 Score=67.99 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=40.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC------CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 6 LLLIGDSGVGKSCLLLRFADD------SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.+++|++|||||||+|+|... ...+....+-.++.....+.++++ -.+.||||..++.
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC---CEEEeCCCCCccC
Confidence 579999999999999999753 233333344455666677777532 3677999976654
No 375
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.42 E-value=6.9e-06 Score=66.21 Aligned_cols=134 Identities=17% Similarity=0.264 Sum_probs=83.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc----------------------------------------------
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIS---------------------------------------------- 34 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~---------------------------------------------- 34 (198)
|+..||+|+|...+||||.+..+...++.+....
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 4678999999999999999988754332211000
Q ss_pred --------cceeeeEEEEEEECCeE-EEEEEEeCCCcc-------------cccccccccccCccEEEEEEECCChhhHH
Q 043946 35 --------TIGVDFKIRTVEQDGKT-VKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIIVYDVTDQESFN 92 (198)
Q Consensus 35 --------~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 92 (198)
+-++...+..+.+.|.. -++.++|.||.- ....+.++++.+.+++|+++--.. .+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VD 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VD 462 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cc
Confidence 00111122223333322 357899999932 234567889999999999974322 11
Q ss_pred HHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 043946 93 NVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADE 137 (198)
Q Consensus 93 ~~~~-~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 137 (198)
.-.. .-..+...-+.+...|+|++|.|+.+..-.++..++++..-
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 1111 22233444456788999999999988766677777776553
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.42 E-value=2.1e-06 Score=66.14 Aligned_cols=95 Identities=22% Similarity=0.205 Sum_probs=57.4
Q ss_pred EEEEEEeCCCccccccc----ccc--------cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 52 VKLQIWDTAGQERFRTI----TSS--------YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
+.+.++||||....... ... .-...+..++|+|++.... .+.+ ...+.... .+.-+|+||.|
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~-a~~f~~~~---~~~giIlTKlD 270 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQ-AKAFHEAV---GLTGIILTKLD 270 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHH-HHHHHhhC---CCCEEEEECCC
Confidence 56899999996432211 111 1134678999999986432 2222 12222211 24577899999
Q ss_pred CCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043946 120 LTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
... ....+.......++|+..++ +|++++++-.
T Consensus 271 ~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 271 GTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 532 23455566677799988888 7888876643
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.42 E-value=1.5e-06 Score=68.16 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-HhCCcEEEEeccCCC
Q 043946 73 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-EIGIPFMETSAKDSL 151 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~ 151 (198)
..++|.+++|+++..+-....+..++..+.. .++|.++|+||+|+.+.. .+....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 5778999999999643333344455444433 367889999999996431 112222222 346789999999999
Q ss_pred CHHHHHHHHH
Q 043946 152 NVEQAFMAMT 161 (198)
Q Consensus 152 ~i~~~~~~l~ 161 (198)
|++++..+|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999998874
No 378
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=7.5e-07 Score=72.17 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC-----CCCC-------------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD-----SYLD-------------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~-----~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
+|.+...-.+||||+-++.+.- ++.+ .....++.......+.+. .+++.++||||+-+|.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGHVDFT 118 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCceeEE
Confidence 5677888899999999887531 1110 111223333344444455 5899999999999998
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
-...+.++..|++|+|+|+...-.-+....|.+ + ..-++|.+.++||+|.....
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~---~ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-M---KRYNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHH-H---HhcCCCeEEEEehhhhcCCC
Confidence 888899999999999999887544333344433 2 23379999999999986543
No 379
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.40 E-value=2.3e-06 Score=65.97 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=84.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC------------------CCcccceeeeEEEE------------------EE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLD------------------SYISTIGVDFKIRT------------------VE 46 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~------------------~~~~~~~~~~~~~~------------------~~ 46 (198)
..||+|+|...+|||||+-.|....... ...+..+.++--.. +.
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 4799999999999999986664332211 11111111111000 00
Q ss_pred -ECCeEEEEEEEeCCCcccccc--cccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 47 -QDGKTVKLQIWDTAGQERFRT--ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 47 -~~~~~~~~~i~D~~g~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
.+....-++++|.+|++.|.. ...+.-...|..++++-++-.- +....+.+.... .-.+|+++|++|+|+-..
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL---aL~VPVfvVVTKIDMCPA 288 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL---ALHVPVFVVVTKIDMCPA 288 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh---hhcCcEEEEEEeeccCcH
Confidence 111223478999999998853 3333445568888888765421 111122222221 226899999999998543
Q ss_pred CcC--CHHHHHHHHHHh--------------------------CCcEEEEeccCCCCHHHHHHH
Q 043946 124 KVV--SYETAKAFADEI--------------------------GIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 124 ~~~--~~~~~~~~~~~~--------------------------~~~~~~~S~~~~~~i~~~~~~ 159 (198)
... ....+.++.+.. -+++|.+|-.+|.|++-+...
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 211 111222222221 157889999999998755443
No 380
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=8.4e-07 Score=68.69 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=96.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC-------------------------------CCCCCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD-------------------------------SYLDSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.+++.++|...+||||+-..+... ...++....-+.+.....++.+.
T Consensus 79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~-- 156 (501)
T KOG0459|consen 79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN-- 156 (501)
T ss_pred CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc--
Confidence 578999999999999986554211 11112222233444445555555
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHHHH--HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNV--KQWLNEIDRYASENVNKLLVGNKCDLTDKK-- 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-- 124 (198)
..+++.|+||+..|-.....-..++|+.++|+++...+ .|..= ......+..... -.+.|+++||+|-+...
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccCcc
Confidence 56889999999998877777788999999999885422 12111 112222333333 35789999999976421
Q ss_pred cCC----HHHHHHHHHHhC------CcEEEEeccCCCCHHHHHH
Q 043946 125 VVS----YETAKAFADEIG------IPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 125 ~~~----~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~ 158 (198)
... .+.+..+....+ ..++++|..+|.++.+..+
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 111 223334444433 4589999999999887765
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.37 E-value=1.9e-06 Score=65.02 Aligned_cols=95 Identities=15% Similarity=0.114 Sum_probs=57.3
Q ss_pred EEEEEEeCCCccccccccc------------ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 52 VKLQIWDTAGQERFRTITS------------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
+.+.++||||....+.... ..-...|.+++|+|++-... .+.. ...+.+.. .+.-+++||.|
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~-~~~f~~~~---~~~g~IlTKlD 228 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQ-AKVFNEAV---GLTGIILTKLD 228 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHH-HHHHHhhC---CCCEEEEEccC
Confidence 6789999999654322211 11234899999999975432 2222 22222211 24577899999
Q ss_pred CCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043946 120 LTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
... ....+.......+.|+..++ +|++++++-.
T Consensus 229 e~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 229 GTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 743 23445556667788888777 7777766543
No 382
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=6.7e-07 Score=70.29 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC----CCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLD----SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
++.|+|.+|||||||||+|....... ...+..+++.....+.+++. ..++||||..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 68999999999999999998532111 11122234445555555442 4789999963
No 383
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.36 E-value=3e-06 Score=58.78 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
+++.|+.|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998754
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.35 E-value=1.1e-06 Score=69.01 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC----CCcccceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLD----SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (198)
++.++|.+|||||||+|+|....... ......+++.....+..++ .+.++||||...
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence 79999999999999999998643210 1112223334444555533 257899999643
No 385
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.34 E-value=6.1e-07 Score=71.34 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=42.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
.+.|.++|.|||||||+||.|.+.+.. ....|.+-+-..+++.+.. .+.+.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 478999999999999999999986543 2334444445556665554 47888999953
No 386
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2.7e-06 Score=74.70 Aligned_cols=111 Identities=23% Similarity=0.262 Sum_probs=65.5
Q ss_pred EEEcCCCCcHHHHHHHHhcC-CCCCCC----cccceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccc-
Q 043946 7 LLIGDSGVGKSCLLLRFADD-SYLDSY----ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--------FRTITSSY- 72 (198)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~- 72 (198)
+|+|++|+||||++..-... .+.+.. ....+ +.. ....+.. .-.++||.|... -...|..+
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~-cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRN-CDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCCC-Ccc-cCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 79999999999998543211 111100 01111 111 2222332 467789998321 12233332
Q ss_pred --------ccCccEEEEEEECCC-----hh----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 73 --------YRGAHGIIIVYDVTD-----QE----SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 73 --------~~~~d~~i~v~d~~~-----~~----s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
.+-.|++|+.+|+.+ +. ....+..-+.++........||++++||.|+..
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 356899999999865 11 123344456667776777899999999999864
No 387
>PRK13695 putative NTPase; Provisional
Probab=98.28 E-value=2.2e-05 Score=55.36 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=42.4
Q ss_pred cccCccEEEEEEE---CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEecc
Q 043946 72 YYRGAHGIIIVYD---VTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAK 148 (198)
Q Consensus 72 ~~~~~d~~i~v~d---~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 148 (198)
.+..+++ +++| ..+..+ ..+.+.+......+.|++++.||... ......+....+..++.+
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~--- 156 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL--- 156 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---
Confidence 3455666 5777 322211 22334444443446899999988532 223344444555666666
Q ss_pred CCCCHHHHHHHHHHHH
Q 043946 149 DSLNVEQAFMAMTADI 164 (198)
Q Consensus 149 ~~~~i~~~~~~l~~~~ 164 (198)
+.+|=+++.+.+.+.+
T Consensus 157 ~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 TPENRDSLPFEILNRL 172 (174)
T ss_pred cchhhhhHHHHHHHHH
Confidence 4555567777777654
No 388
>PRK14974 cell division protein FtsY; Provisional
Probab=98.28 E-value=1.6e-06 Score=67.11 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=56.7
Q ss_pred EEEEEEeCCCccccccc----cccc--ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.+.++||+|....... ...+ ....|.+++|+|+...+... .....+.... ..--+++||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~---~~a~~f~~~~---~~~giIlTKlD~~~--- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV---EQAREFNEAV---GIDGVILTKVDADA--- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH---HHHHHHHhcC---CCCEEEEeeecCCC---
Confidence 45899999996532211 1111 23468899999997654221 1122222211 23467899999743
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 126 VSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
..-.+...+...+.|+..++ +|++++++..+
T Consensus 294 -~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 294 -KGGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 23344455556788888877 78888776543
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=2.3e-06 Score=65.17 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=37.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC-c-----ccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSY-I-----STIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
.++++|++|||||||+|.|.+....... . .+..++.....+...+. ..++|+||...+
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 5899999999999999999874332211 1 11123344445555432 368899997654
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=98.25 E-value=2.6e-06 Score=65.25 Aligned_cols=58 Identities=34% Similarity=0.367 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCC-cc-----cceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSY-IS-----TIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
.++++|++|||||||+|.|.+....... .+ +..++.....+..++. ..++|+||...+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 4789999999999999999865332211 11 1122333444444432 378899996543
No 391
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=9.7e-06 Score=60.11 Aligned_cols=60 Identities=23% Similarity=0.489 Sum_probs=44.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC----cccceeeeEEEEEEECCeEEEEEEEeCCC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSY----ISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (198)
..++|+-+|..|.|||||++.|.+..+.... .++.........+.-.+..+++++.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 4689999999999999999999987664332 23333333334444567778999999998
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.17 E-value=2.5e-05 Score=58.98 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=64.6
Q ss_pred cccccccCccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEe
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (198)
+...-..+.|-+++|+.+.+|+- ...+..++-.... .++..+|++||+|+.+......++.......++.+++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 33444556788888888888764 3344444433322 3567777899999986653332456667778899999999
Q ss_pred ccCCCCHHHHHHHHHH
Q 043946 147 AKDSLNVEQAFMAMTA 162 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~ 162 (198)
++++.+++++.+++..
T Consensus 149 ~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 149 AKNGDGLEELAELLAG 164 (301)
T ss_pred CcCcccHHHHHHHhcC
Confidence 9999999999988743
No 393
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=5.3e-06 Score=66.20 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=80.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC------------C----CCccccee--eeEEEEEEE------------CCeEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYL------------D----SYISTIGV--DFKIRTVEQ------------DGKTVKL 54 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~------------~----~~~~~~~~--~~~~~~~~~------------~~~~~~~ 54 (198)
++.|+.....|||||-..|+...-. . +....++. +.....++. ++..+-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 5678899999999999999642110 0 00111111 111111111 2345789
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-CCcCCHHHHHH
Q 043946 55 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-KKVVSYETAKA 133 (198)
Q Consensus 55 ~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~-~~~~~~~~~~~ 133 (198)
.++|.||+-+|.+.....++-.|+.+.|+|..+.-..+.-..+.+.+ ..++.-++++||+|..- +-+++.+++.+
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~----~ERIkPvlv~NK~DRAlLELq~~~EeLyq 176 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI----AERIKPVLVMNKMDRALLELQLSQEELYQ 176 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH----HhhccceEEeehhhHHHHhhcCCHHHHHH
Confidence 99999999999999999999999999999988764433222222223 22445566899999642 34556666655
Q ss_pred HHH
Q 043946 134 FAD 136 (198)
Q Consensus 134 ~~~ 136 (198)
..+
T Consensus 177 tf~ 179 (842)
T KOG0469|consen 177 TFQ 179 (842)
T ss_pred HHH
Confidence 444
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.14 E-value=3.5e-05 Score=61.47 Aligned_cols=83 Identities=16% Similarity=0.035 Sum_probs=45.1
Q ss_pred EEEEEEeCCCccccccc----ccc--cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI----TSS--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.+.|+||+|....... ... .....+-++||+|+.-.+... .....+... -.+.-+++||.|....
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~ar-- 254 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHAK-- 254 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCCC--
Confidence 67899999995433211 111 123467899999987654322 122223221 2356788999997421
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q 043946 126 VSYETAKAFADEIGIPFME 144 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (198)
.-.+.......+.|+..
T Consensus 255 --gG~aLs~~~~t~~PI~f 271 (429)
T TIGR01425 255 --GGGALSAVAATKSPIIF 271 (429)
T ss_pred --ccHHhhhHHHHCCCeEE
Confidence 22233344445555443
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=3.8e-05 Score=60.25 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC---CCCCcccceeeeE------------------EEEEEEC---------CeEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSY---LDSYISTIGVDFK------------------IRTVEQD---------GKTVKL 54 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~---~~~~~~~~~~~~~------------------~~~~~~~---------~~~~~~ 54 (198)
.++++|++||||||++.+|...-. ........+.+.. .....-. -....+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 578999999999999999874311 0000000111110 0011000 012468
Q ss_pred EEEeCCCccccccc---ccccc---cCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCc
Q 043946 55 QIWDTAGQERFRTI---TSSYY---RGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASE--NVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 55 ~i~D~~g~~~~~~~---~~~~~---~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~ 125 (198)
.++||+|....+.. ....+ ....-.++|++++... .+..+...+......-.. .-+--++++|.|...
T Consensus 219 VLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~--- 295 (374)
T PRK14722 219 VLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS--- 295 (374)
T ss_pred EEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC---
Confidence 89999996533221 11112 2334568899987643 333332222222110000 012356789999642
Q ss_pred CCHHHHHHHHHHhCCcEEEEe
Q 043946 126 VSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S 146 (198)
..-.+..+....+.++..++
T Consensus 296 -~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 -NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred -CccHHHHHHHHHCcCeEEEe
Confidence 45566667777787766554
No 396
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.07 E-value=4.4e-06 Score=59.46 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=40.4
Q ss_pred EEEEEeCCCccccccc---cccc---ccC---ccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 53 KLQIWDTAGQERFRTI---TSSY---YRG---AHGIIIVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~---~~~~---~~~---~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
...++|+||+-+.... .+.. +.+ --++++++|..= -++.+.+...+..+..+..-.+|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 3678999997543211 1111 111 235667766532 23334444455555555555789999999999864
Q ss_pred C
Q 043946 123 K 123 (198)
Q Consensus 123 ~ 123 (198)
.
T Consensus 179 ~ 179 (273)
T KOG1534|consen 179 D 179 (273)
T ss_pred h
Confidence 3
No 397
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.07 E-value=2.7e-05 Score=56.43 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=39.9
Q ss_pred EEEEeC-CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 54 LQIWDT-AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 54 ~~i~D~-~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
+.+.|| +|.+++. ....+.+|.+|.|+|++.+ ++...........+. . =.++.+|+||.|..
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el-g-~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL-G-IKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh-C-CceEEEEEeeccch
Confidence 556666 4554443 3456789999999999854 444444443333333 1 27999999999953
No 398
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.05 E-value=1.5e-05 Score=63.49 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=77.9
Q ss_pred eeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHH-HHhcC
Q 043946 39 DFKIRTVEQ-DGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-DRYAS 106 (198)
Q Consensus 39 ~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~-~~~~~ 106 (198)
......+.+ .+ ..+.++|++|+......|..++.+++++|||+++++- ..+.+....+..+ ....-
T Consensus 224 Gi~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 224 GITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp SEEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CeeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 344455556 55 7899999999998889999999999999999998641 1232223333222 22222
Q ss_pred CCCcEEEEEeCCCCCCC-----C-----------c--CCHHHHHHHHHHh------------CCcEEEEeccCCCCHHHH
Q 043946 107 ENVNKLLVGNKCDLTDK-----K-----------V--VSYETAKAFADEI------------GIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 107 ~~~p~iiv~nK~D~~~~-----~-----------~--~~~~~~~~~~~~~------------~~~~~~~S~~~~~~i~~~ 156 (198)
.+.|+++++||.|+... . . -..+.+..+.... .+.+..++|.+..++..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 47899999999997320 0 0 2234444433321 123457778888888888
Q ss_pred HHHHHHH
Q 043946 157 FMAMTAD 163 (198)
Q Consensus 157 ~~~l~~~ 163 (198)
|+.+.+.
T Consensus 382 ~~~v~~~ 388 (389)
T PF00503_consen 382 FNAVKDI 388 (389)
T ss_dssp HHHHHHH
T ss_pred HHHhcCc
Confidence 8777654
No 399
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00014 Score=53.35 Aligned_cols=157 Identities=25% Similarity=0.306 Sum_probs=94.0
Q ss_pred eeEEEEEcCCCC--cHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEE----EEEEEeCCCcccccccccccccCc
Q 043946 3 LFKLLLIGDSGV--GKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTV----KLQIWDTAGQERFRTITSSYYRGA 76 (198)
Q Consensus 3 ~~~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~D~~g~~~~~~~~~~~~~~~ 76 (198)
...++|.|.+|+ ||.+|+.+|....+.....+...+++...+ ++.+.+ .+.+.-.-. .+.--........
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwt--id~kyysadi~lcishicd--e~~lpn~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWT--IDNKYYSADINLCISHICD--EKFLPNAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceE--ecceeeecceeEEeecccc--hhccCCcccccce
Confidence 346799999999 999999999887776555554444443333 333322 233222211 1111122233445
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------------------------------
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK--------------------------------- 123 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--------------------------------- 123 (198)
.+++.|||.+....+..++.|+.--.- ..- --.+.++||.|....
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdi-nsf-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDI-NSF-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhcccccc-ccc-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 788999999999889999998752111 110 123445688886410
Q ss_pred --------Cc---CCHHHHHHHHHHhCCcEEEEeccC------------CCCHHHHHHHHHHHHH
Q 043946 124 --------KV---VSYETAKAFADEIGIPFMETSAKD------------SLNVEQAFMAMTADIK 165 (198)
Q Consensus 124 --------~~---~~~~~~~~~~~~~~~~~~~~S~~~------------~~~i~~~~~~l~~~~~ 165 (198)
.. .......+++.++++.+++.++.+ ..|++.+|..|.-.+.
T Consensus 158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 00 011234567788889999888743 2478888888776554
No 400
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.04 E-value=4.1e-06 Score=64.85 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=42.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQ 62 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 62 (198)
-+++.|+|.|++||||+||+|..++.- ......+.+...+.+..+. .+.|.|.||.
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C-~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKAC-NVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhccc-cCCCCccchhhhhheeccC---CceeccCCce
Confidence 589999999999999999999976552 2334445556666666665 5889999994
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=3.2e-05 Score=54.41 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=46.2
Q ss_pred EEEEEEeCCCccccccc----cccc--ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
..+.++|++|....... ...+ ....+.+++|+|+...... ..+...+.... + ..-+++||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~--~-~~~viltk~D~~~~-- 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL--G-ITGVILTKLDGDAR-- 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence 45788999996432111 1111 1348999999998754332 22333332222 2 35677799997542
Q ss_pred CCHHHHHHHHHHhCCcEEE
Q 043946 126 VSYETAKAFADEIGIPFME 144 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (198)
...+...+...++|+..
T Consensus 155 --~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 155 --GGAALSIRAVTGKPIKF 171 (173)
T ss_pred --cchhhhhHHHHCcCeEe
Confidence 22333366677776543
No 402
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.96 E-value=2.5e-05 Score=54.67 Aligned_cols=135 Identities=18% Similarity=0.284 Sum_probs=65.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeC-CCcc--------------------
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDT-AGQE-------------------- 63 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~-------------------- 63 (198)
+|++-|++|+|||||+++++..-.. ...+.. -+....+..++...-+.+.|. .|.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc-cCCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 6899999999999999998742110 111211 233344445555556666666 3311
Q ss_pred --cccccccccc----cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCcCCHHHHHHHHH
Q 043946 64 --RFRTITSSYY----RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC-DLTDKKVVSYETAKAFAD 136 (198)
Q Consensus 64 --~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~~~ 136 (198)
.+...-...+ ..+| ++|+|=--+-. .....|.+.+......+.|++.++.+. +.+ .++++..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~~--------~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDNP--------FLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--SC--------CHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCcH--------HHHHHHh
Confidence 0111111112 3445 66666211100 011334555555555678999888776 421 2244555
Q ss_pred HhCCcEEEEeccCCCCH
Q 043946 137 EIGIPFMETSAKDSLNV 153 (198)
Q Consensus 137 ~~~~~~~~~S~~~~~~i 153 (198)
..++.+++++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 55678888877766544
No 403
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.96 E-value=1.7e-05 Score=56.17 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=39.9
Q ss_pred EEEEEEeCCCccccccc--c---cccccCccEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI--T---SSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~--~---~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
....++++.|...-..+ . ....-..+.+|.|+|+.+-.....+.. +..++ .. -=++++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi---~~---ADvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQI---AF---ADVIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHH---CT----SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcc---hh---cCEEEEeccccCChh-
Confidence 45667777774433332 0 001234689999999966322222222 22222 11 227789999986543
Q ss_pred CCHHHHHHHHHHhC
Q 043946 126 VSYETAKAFADEIG 139 (198)
Q Consensus 126 ~~~~~~~~~~~~~~ 139 (198)
...+...+..+..+
T Consensus 158 ~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 158 QKIERVREMIRELN 171 (178)
T ss_dssp --HHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHC
Confidence 12245555555443
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=8.1e-05 Score=51.06 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=34.7
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
+.+.++|++|... ....++..+|-+++|..++-.+.+.- ... ..+ ..--++++||.|
T Consensus 92 ~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~-~k~-~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQA-IKA-GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHH-hhh-hHh------hhcCEEEEeCCC
Confidence 5688999988542 23348888999999988773332111 111 111 122378899987
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.00015 Score=59.11 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=49.2
Q ss_pred EEEEEEeCCCcccccccccc---cc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC
Q 043946 52 VKLQIWDTAGQERFRTITSS---YY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV 126 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 126 (198)
+.+.|+|++|....+..... .+ ......++|++.... ...+...+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~---- 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG---- 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----
Confidence 67899999996433211100 01 012345677776642 2333333333322 246778999999632
Q ss_pred CHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 127 SYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
....+.......+.++..++ +|..+
T Consensus 499 ~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 34566667777787766554 34444
No 406
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.92 E-value=0.00013 Score=56.45 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-.+|.|.-|||||||+|+++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3578899999999999999853
No 407
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.92 E-value=0.00033 Score=54.14 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=43.6
Q ss_pred CccEEEEEEECCChhhHHH-HHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--CcEEEEeccCC
Q 043946 75 GAHGIIIVYDVTDQESFNN-VKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAKDS 150 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~-~~~-~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~ 150 (198)
..|++|-|+|+..-..... ... ...++. .-=+|++||.|+.++.. .+..+...++.+ ++++.++. .+
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~ 186 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY-GD 186 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc-cC
Confidence 3588999999876433211 222 222231 12278999999987652 455666666665 57777776 33
Q ss_pred CCHHHHH
Q 043946 151 LNVEQAF 157 (198)
Q Consensus 151 ~~i~~~~ 157 (198)
....+++
T Consensus 187 ~~~~~ll 193 (323)
T COG0523 187 VDLAELL 193 (323)
T ss_pred CCHHHhh
Confidence 4444333
No 408
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.88 E-value=9.3e-05 Score=50.19 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=61.0
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 043946 7 LLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 86 (198)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (198)
+.-|..|+|||++.-.+...-. .......-.+.. .......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3457889999999766642100 000011000000 0011111678999999753 333456788999999999887
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 87 DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
. .++..+...++.+.... ...++.+|+|+.+..
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 4 34444444444454332 345788999999853
No 409
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.87 E-value=7.6e-05 Score=47.84 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=50.1
Q ss_pred EEEEc-CCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 6 LLLIG-DSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 6 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
|+|.| ..|+||||+...|...-.. ...+ ...+..+.. +.+.++|+|+..... ....+..+|.++++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56777 5589999998777532110 1111 111222222 668999999864332 3367788999999998
Q ss_pred CCChhhHHHHHHHHH
Q 043946 85 VTDQESFNNVKQWLN 99 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~ 99 (198)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 76 445555555554
No 410
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.87 E-value=3.4e-05 Score=55.84 Aligned_cols=117 Identities=21% Similarity=0.254 Sum_probs=73.5
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDL 120 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~ 120 (198)
..+.+.|.+|+.+-...|.+.+.++-.++|++.++.- +.+.+-...+..+..+- -.+.++|+++||-|+
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl 278 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 278 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence 4567889988888778888888888888877665431 11222222222222210 035789999999998
Q ss_pred CCC----------------CcCCHHHHHHHHHHh----C-----C-cEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 043946 121 TDK----------------KVVSYETAKAFADEI----G-----I-PFMETSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 121 ~~~----------------~~~~~~~~~~~~~~~----~-----~-~~~~~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
.++ .....+.++++..+. + + .-..+.|.+..||.-+|..+.+.+.+..
T Consensus 279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 642 223344444444332 1 1 1246788899999999999988887643
No 411
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.85 E-value=3.4e-05 Score=58.10 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=36.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC------CCCCcccceeeeEEEE-EEECCeEEEEEEEeCCCc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY------LDSYISTIGVDFKIRT-VEQDGKTVKLQIWDTAGQ 62 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~ 62 (198)
..+++.|+|-||+|||||||++..... .....++. +..... +.+... -.+.+.||||.
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGV--T~~V~~~iri~~r-p~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGV--TRRVSERIRISHR-PPVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCc--eeeehhheEeccC-CceEEecCCCc
Confidence 357899999999999999999853221 11222333 333333 333222 24788899993
No 412
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.85 E-value=0.0002 Score=51.47 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=48.1
Q ss_pred EEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
+.+.++||+|....... ...++ ...+-+++|++++.... +..+..++ ... + +--++++|.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~--~-~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAF--G-IDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHS--S-TCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hcc--c-CceEEEEeecCCC--
Confidence 45899999995543211 11111 25678999999987543 22222222 221 1 2355799999632
Q ss_pred cCCHHHHHHHHHHhCCcEEEEe
Q 043946 125 VVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~S 146 (198)
..-.+..+....+.|+-.++
T Consensus 155 --~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 --RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp --TTHHHHHHHHHHTSEEEEEE
T ss_pred --CcccceeHHHHhCCCeEEEE
Confidence 34566677778888766554
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=8.8e-05 Score=59.15 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=49.7
Q ss_pred EEEEEEeCCCcccccc----cccccc--cCccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRT----ITSSYY--RGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
..+.++||+|...... ....+. ....-.++|+|++. .+.+ .+....+.. . -.-=++++|.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~---~~~~~~f~~---~-~~~~~I~TKlDEt~-- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL---DEVISAYQG---H-GIHGCIITKVDEAA-- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH---HHHHHHhcC---C-CCCEEEEEeeeCCC--
Confidence 3578899999543211 111111 22346788899884 3333 333322221 1 23456789999642
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 125 VVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..-.+..+....+.++..++ +|.++
T Consensus 341 --~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 --SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred --CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 45566677777788766554 45555
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.82 E-value=3.4e-05 Score=61.92 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=48.8
Q ss_pred EEEEEEeCCCcccccccc------cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTIT------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
..+.|+||+|........ ...+...|.+++|+|++.... .......+.... + ..-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~---av~~a~~F~~~l--~-i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ---AKNQAKAFHEAV--G-IGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH---HHHHHHHHHhcC--C-CCEEEEecccCCC---
Confidence 368999999965432111 112346789999999876532 122222232211 1 2356789999632
Q ss_pred CCHHHHHHHHHHhCCcEEEEec
Q 043946 126 VSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
..-.+.......+.|+..++.
T Consensus 247 -~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 -KGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred -cccHHHHHHHHHCcCEEEEec
Confidence 234455566667777665543
No 415
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.80 E-value=4.2e-05 Score=53.80 Aligned_cols=44 Identities=30% Similarity=0.209 Sum_probs=27.9
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
|++++|+|+.++.+.. -..+.+.+. ....+.|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~-~~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCR-CPQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCC-CHHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 7899999998753211 112222221 2233689999999999954
No 416
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.79 E-value=0.00013 Score=40.93 Aligned_cols=45 Identities=27% Similarity=0.294 Sum_probs=27.4
Q ss_pred cCccEEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 74 RGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
.-.++++|++|++.. .++..-...+..++.... +.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 346899999999864 344444556666666554 689999999998
No 417
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.77 E-value=0.00023 Score=44.57 Aligned_cols=69 Identities=20% Similarity=0.152 Sum_probs=44.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEE
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-TSSYYRGAHGIIIVYD 84 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 84 (198)
+++.|..|+||||+...+...-.. .... ...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999999888642111 0001 11111 5788899986433221 1456678899999998
Q ss_pred CCCh
Q 043946 85 VTDQ 88 (198)
Q Consensus 85 ~~~~ 88 (198)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7754
No 418
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.74 E-value=2.5e-05 Score=55.23 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
+||+|+|+|||||||+.++|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999865
No 419
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.72 E-value=0.00021 Score=46.06 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=57.8
Q ss_pred cCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh
Q 043946 10 GDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE 89 (198)
Q Consensus 10 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 89 (198)
+..|+||||+...|...-.........- ........ ..+.++|+|+.... .....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l-----~d~d~~~~-~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLL-----VDLDLQFG-DDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEE-----EECCCCCC-CCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 4567999998877753111000111111 11111111 15889999986433 2345678899999999776 44
Q ss_pred hHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 043946 90 SFNNVKQWLNEIDRYASE-NVNKLLVGNK 117 (198)
Q Consensus 90 s~~~~~~~~~~~~~~~~~-~~p~iiv~nK 117 (198)
++..+..+.+.+...... ..++.+|+|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 566677777777665443 4567788875
No 420
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.72 E-value=3.3e-05 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|.|++||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.69 E-value=0.00046 Score=55.48 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=50.5
Q ss_pred EEEEEEeCCCccccc----cccccccc---CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFR----TITSSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
+.+.++|++|..... .....++. ...-+.+|++++-.. ..+......+.. .+ +--++++|.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~---~~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSR---LP-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCC---CC-CCEEEEecccccc--
Confidence 568999999965432 11222222 234667888886432 222332222221 12 2357899999632
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 125 VVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
....+..+....+.++..++ +|.++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 34567777788888766554 45554
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.67 E-value=0.00039 Score=55.78 Aligned_cols=86 Identities=16% Similarity=0.086 Sum_probs=49.3
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.+.|+||+|....+.... ...-..|.+++|+|+...+ ........+.... + ..-+++||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~--- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDA--- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 5689999999533211110 1123468889999987543 2233333333222 1 2356789999632
Q ss_pred CCHHHHHHHHHHhCCcEEEEec
Q 043946 126 VSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
....+.......++|+..++.
T Consensus 254 -~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 -RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred -cccHHHHHHHHHCcCEEEEeC
Confidence 233466677777887766554
No 423
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.67 E-value=4.7e-05 Score=55.22 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=38.1
Q ss_pred EEEEEEeCCCccccccc------ccccccCccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 52 VKLQIWDTAGQERFRTI------TSSYYRGAHGIIIVYDVT------DQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
....++|+||+-++... ...++..-|.-+.++.+. +|..+ +...+-.+..+..-..|-+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~--iS~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKF--ISSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHH--HHHHHHHHHHHHhhcccchhhhhHhH
Confidence 34689999997654221 122344445444444433 44433 33344344444444678888999999
Q ss_pred CC
Q 043946 120 LT 121 (198)
Q Consensus 120 ~~ 121 (198)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 85
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=97.66 E-value=0.00026 Score=56.83 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=47.9
Q ss_pred EEEEEEeCCCccccccc----ccc--cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI----TSS--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.+.|+||+|.-..... ... -.-..+.+++|+|+...+. +......+.... + ..-+|+||.|...
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~---av~~a~~F~~~~--~-i~giIlTKlD~~~--- 254 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD---AVNTAKAFNEAL--G-LTGVILTKLDGDA--- 254 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH---HHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence 56899999995432111 111 1124677899999876432 223333333211 1 2356779999632
Q ss_pred CCHHHHHHHHHHhCCcEEEEec
Q 043946 126 VSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
..-.+.......++|+..++.
T Consensus 255 -rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 -RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred -cccHHHHHHHHHCcCEEEEeC
Confidence 223356666777887666554
No 425
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=4.2e-05 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.666 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
.||+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999998753
No 426
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.65 E-value=0.006 Score=42.43 Aligned_cols=139 Identities=11% Similarity=0.098 Sum_probs=94.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.-.|+++|..+.++..|.+++..... +.. . .+..... +.+ |. .....-.+.|.++|+
T Consensus 15 ~atiLLVg~e~~~~~~LA~a~l~~~~------~~~--l---~Vh~a~s-LPL-----p~------e~~~lRprIDlIVFv 71 (176)
T PF11111_consen 15 TATILLVGTEEALLQQLAEAMLEEDK------EFK--L---KVHLAKS-LPL-----PS------ENNNLRPRIDLIVFV 71 (176)
T ss_pred eeEEEEecccHHHHHHHHHHHHhhcc------cee--E---EEEEecc-CCC-----cc------cccCCCceeEEEEEE
Confidence 45799999999999999999985321 111 1 1111100 111 11 111123457999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
+|.....++..++.-+..+....-. -.+.++++-....+...+..+++.+++..++++++.....+.++...+-+.|.+
T Consensus 72 inl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~ 150 (176)
T PF11111_consen 72 INLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR 150 (176)
T ss_pred EecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence 9999999988887765555322222 356777777777666678899999999999999999999888877777777766
Q ss_pred HHH
Q 043946 163 DIK 165 (198)
Q Consensus 163 ~~~ 165 (198)
.+.
T Consensus 151 ~lq 153 (176)
T PF11111_consen 151 MLQ 153 (176)
T ss_pred HHH
Confidence 554
No 427
>PRK07261 topology modulation protein; Provisional
Probab=97.64 E-value=4.4e-05 Score=53.67 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.||+|+|++|+|||||.+.|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999864
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00038 Score=55.36 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=47.5
Q ss_pred EEEEEEeCCCcccccc----ccccccc-----CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 52 VKLQIWDTAGQERFRT----ITSSYYR-----GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
+.+.++||+|...... .+..++. ...-.++|+|++.... .+......+... -+--++++|.|...
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~--~~~~~~~~f~~~----~~~glIlTKLDEt~ 373 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH--HTLTVLKAYESL----NYRRILLTKLDEAD 373 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH--HHHHHHHHhcCC----CCCEEEEEcccCCC
Confidence 5678999999643211 1222222 2346788999886531 222222222111 23456789999642
Q ss_pred CCcCCHHHHHHHHHHhCCcEEEEec
Q 043946 123 KKVVSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
..-.+.......+.|+..++.
T Consensus 374 ----~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 374 ----FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred ----CccHHHHHHHHHCCCEEEEec
Confidence 345566677777877655543
No 429
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.60 E-value=5.6e-05 Score=51.30 Aligned_cols=20 Identities=45% Similarity=0.704 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 430
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.59 E-value=0.00081 Score=52.95 Aligned_cols=128 Identities=19% Similarity=0.257 Sum_probs=69.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC--CC-CCcccceeeeEEEEEEEC-------------------------------Ce
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSY--LD-SYISTIGVDFKIRTVEQD-------------------------------GK 50 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~-------------------------------~~ 50 (198)
.|+++||.||||||-+-.|..+-. .. ....-+++ .++.++ -.
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITt----DtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITT----DTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEe----ccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 478999999999999888764322 00 11111111 111111 12
Q ss_pred EEEEEEEeCCCccccccc----ccccccC--ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 51 TVKLQIWDTAGQERFRTI----TSSYYRG--AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~----~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
.+.+.++||.|...++.. ...++.. ..-+-||++++... ..+...+..+... +. --++++|.|..
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~---~i-~~~I~TKlDET--- 351 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF---PI-DGLIFTKLDET--- 351 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC---Cc-ceeEEEccccc---
Confidence 245899999997655433 2223322 23455667776532 3344444434222 21 13468999953
Q ss_pred cCCHHHHHHHHHHhCCcEEEEe
Q 043946 125 VVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~S 146 (198)
-+.-.+.......+.|+..++
T Consensus 352 -~s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 352 -TSLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred -CchhHHHHHHHHhCCCeEEEe
Confidence 246666777777776654443
No 431
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.58 E-value=4.5e-05 Score=53.49 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (198)
=+++.||+||||||++++|....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998765
No 432
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.57 E-value=0.00065 Score=55.21 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=48.2
Q ss_pred EEEEEEeCCCcccccc---cccccccC---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRT---ITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
..+.++|++|...... .....+.. ..-.++|+|+.... ..+.+....+ .. ....-+++||.|...
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f---~~-~~~~g~IlTKlDet~--- 405 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAY---RG-PGLAGCILTKLDEAA--- 405 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHh---cc-CCCCEEEEeCCCCcc---
Confidence 3578899999433221 11111111 22367888987532 2222222222 22 224456789999632
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 126 VSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..-.+..+....++++..++ +|.+|
T Consensus 406 -~~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 406 -SLGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred -cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence 45566677778888776554 45566
No 433
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.57 E-value=0.0005 Score=46.26 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (198)
--+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998643
No 434
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00038 Score=54.67 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=50.0
Q ss_pred EEEEEEeCCCccccccc----cccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI----TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.+.|+||+|....... ...+.. ..+.+++|.++... ...+...+..+ ... -+--++++|.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f---~~l-~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKL---AEI-PIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhc---CcC-CCCEEEEEcccCCC---
Confidence 57899999997433221 112222 34666777776432 22223332222 211 23466799999642
Q ss_pred CCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 126 VSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
..-.+.......+.|+..++. |.++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt~--GQ~Vp 382 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMTD--GQNIT 382 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEec--CCCCC
Confidence 456667777788887765553 44444
No 435
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.51 E-value=0.00011 Score=42.14 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 043946 6 LLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (198)
.+|.|+.|+|||||++++.
T Consensus 26 tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999875
No 436
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.51 E-value=6.6e-05 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999854
No 437
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.45 E-value=0.0062 Score=42.77 Aligned_cols=84 Identities=8% Similarity=0.052 Sum_probs=51.6
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHH
Q 043946 53 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAK 132 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 132 (198)
.+.++|+|+.... .....+..+|.+|++++++. .++..+..+++.+.... .....+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 5889999875433 23445688999999998774 34555555555554421 23567889999864321 222234
Q ss_pred HHHHHhCCcEE
Q 043946 133 AFADEIGIPFM 143 (198)
Q Consensus 133 ~~~~~~~~~~~ 143 (198)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 45555666654
No 438
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00012 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
.=|+|+|++|||||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 34899999999999999999864
No 439
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.44 E-value=0.00015 Score=42.91 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
|.+.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998854
No 440
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.43 E-value=0.0011 Score=46.75 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=59.1
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHH
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYET 130 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 130 (198)
.+.+.++|+|+.... .....+..+|.+++++.++. .+...+..+.+.+... +.|+.+|+||.|.... ..++
T Consensus 92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~ 162 (179)
T cd03110 92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE 162 (179)
T ss_pred CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence 467899999965322 33456688999999998874 3555666666656543 5678899999996432 3456
Q ss_pred HHHHHHHhCCcEE
Q 043946 131 AKAFADEIGIPFM 143 (198)
Q Consensus 131 ~~~~~~~~~~~~~ 143 (198)
++++++..+++++
T Consensus 163 ~~~~~~~~~~~vl 175 (179)
T cd03110 163 IEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHcCCCeE
Confidence 7778888887765
No 441
>PRK06217 hypothetical protein; Validated
Probab=97.42 E-value=0.00014 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 442
>PRK03839 putative kinase; Provisional
Probab=97.37 E-value=0.00016 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
++|+|+|+|||||||+.++|...
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998653
No 443
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00024 Score=51.11 Aligned_cols=26 Identities=27% Similarity=0.164 Sum_probs=21.1
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHhhh
Q 043946 144 ETSAKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 144 ~~S~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
++||++.+-+.|+++.+.+...+-++
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eGmT 188 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEGMT 188 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCe
Confidence 68999999999999988877765443
No 444
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.37 E-value=0.00018 Score=48.86 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.|+|+|+.|+|||||++.|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00021 Score=52.45 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
|+++|++|||||||+|-+.+-
T Consensus 32 vsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988764
No 446
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.35 E-value=0.0034 Score=49.86 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=51.1
Q ss_pred EEEEEEeCCCcccccc----cccccccC---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRT----ITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
+.+.++|++|...... ....++.. -.-.++|+|++... ..+...+. .+... -+--++++|.|...
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~---~~~~~-~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFH---QFSPF-SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHH---HhcCC-CCCEEEEEeccCCC--
Confidence 5689999999654321 11222222 22578999998753 22233332 22221 24466899999632
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 125 VVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..-.+..+....+.|+..++ +|.++
T Consensus 327 --~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred --cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 35566667777787765443 46666
No 447
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.33 E-value=0.00024 Score=48.02 Aligned_cols=21 Identities=52% Similarity=0.844 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999853
No 448
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.33 E-value=0.0002 Score=47.45 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998753
No 449
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0019 Score=55.22 Aligned_cols=92 Identities=15% Similarity=0.093 Sum_probs=50.8
Q ss_pred EEEEEEeCCCccccc----cccccc--ccCccEEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFR----TITSSY--YRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
+.+.|+||+|..... ...... ....+-+++|+|++.. +.+..+.. .+...... -+-=+|++|.|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~---~f~~~~~~-~i~glIlTKLDEt~-- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH---AYRHGAGE-DVDGCIITKLDEAT-- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH---HHhhcccC-CCCEEEEeccCCCC--
Confidence 458899999943221 111111 2335567899998753 23333322 22221111 13456799999642
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 125 VVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..-.+..+....++++..++ +|.+|
T Consensus 338 --~~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 338 --HLGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred --CccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 34556667777788766554 45555
No 450
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.31 E-value=0.00023 Score=47.88 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 4789999999999999988864
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.00024 Score=47.26 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999864
No 452
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.26 E-value=0.00098 Score=44.67 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|++.|+.|+|||||++.+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
No 453
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.26 E-value=0.00053 Score=53.18 Aligned_cols=128 Identities=24% Similarity=0.205 Sum_probs=71.8
Q ss_pred eCCCcc-cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH
Q 043946 58 DTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFAD 136 (198)
Q Consensus 58 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 136 (198)
+.||+. .+.......+...|+++.|+|+-++.+. +-..+.+... +.|.++|+||.|+..... ..+=.+.+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s-----~~~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGT-----RNPELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccc-----cCccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHh
Confidence 446654 4455677788999999999999987642 1111222222 356699999999965432 1222223333
Q ss_pred HhCCcEEEEeccCCCCHHHHHHHHHHHH---HHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 137 EIGIPFMETSAKDSLNVEQAFMAMTADI---KNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 137 ~~~~~~~~~S~~~~~~i~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
..+...+.+++..+.+...+...+.... .++....-. .+.....-.-+-++++||+
T Consensus 89 ~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~--~~~~~~v~vvG~PNVGKSs 147 (322)
T COG1161 89 EEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGL--LKRKIRVGVVGYPNVGKST 147 (322)
T ss_pred cCCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCC--CccceEEEEEcCCCCcHHH
Confidence 3356678888888777666654333222 222222111 1222334455666666664
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.26 E-value=0.00033 Score=51.09 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++|+|++|||||||+|-+.+-
T Consensus 34 vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999988753
No 455
>PRK14530 adenylate kinase; Provisional
Probab=97.25 E-value=0.00027 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..+|+|+|+|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998863
No 456
>PRK01889 GTPase RsgA; Reviewed
Probab=97.25 E-value=0.00034 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
+++++|.+|+|||||+|.|.+.
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6899999999999999999864
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.25 E-value=0.00026 Score=50.47 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|||||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999653
No 458
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.24 E-value=0.00029 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..+|++|+|++|||||+|+..|+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998875
No 459
>PRK14532 adenylate kinase; Provisional
Probab=97.23 E-value=0.00028 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+++|+|||||||+.++|..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 460
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.22 E-value=0.00028 Score=49.90 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 461
>PRK14531 adenylate kinase; Provisional
Probab=97.21 E-value=0.00034 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..+|+++|+|||||||+.+.|..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.20 E-value=0.00038 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (198)
..-|+|+|++|||||||++.|...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 456889999999999999999753
No 463
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.20 E-value=0.00032 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|+|+|||||||+.+.|..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998854
No 464
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.19 E-value=0.00037 Score=46.46 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSY 28 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~ 28 (198)
-.++++|++|+|||++++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3689999999999999999986543
No 465
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0043 Score=46.85 Aligned_cols=85 Identities=14% Similarity=0.074 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI----TSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.+.++|++|....... ...++ ...+-+++|+|++... ..+..+...+... .+--++++|.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~----~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCC----CCCEEEEEeecCCC---
Confidence 57899999996532111 11222 2346789999986422 1223333333221 23466899999643
Q ss_pred CCHHHHHHHHHHhCCcEEEEe
Q 043946 126 VSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S 146 (198)
..-.+..++...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 34455666667787765554
No 466
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.17 E-value=0.00037 Score=44.77 Aligned_cols=20 Identities=45% Similarity=0.780 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 043946 5 KLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~ 24 (198)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47999999999999998875
No 467
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.17 E-value=0.00013 Score=56.85 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=46.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc--cccccccccCccEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF--RTITSSYYRGAHGII 80 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~~~~~~d~~i 80 (198)
.|-|.++|.||+||||+||.|-....-... | ++-+..+..+..-. .++.++|+||.--- +...... ..+++
T Consensus 307 qISVGfiGYPNvGKSSiINTLR~KkVCkvA-P-IpGETKVWQYItLm--krIfLIDcPGvVyps~dset~iv---LkGvV 379 (572)
T KOG2423|consen 307 QISVGFIGYPNVGKSSIINTLRKKKVCKVA-P-IPGETKVWQYITLM--KRIFLIDCPGVVYPSSDSETDIV---LKGVV 379 (572)
T ss_pred ceeeeeecCCCCchHHHHHHHhhccccccc-C-CCCcchHHHHHHHH--hceeEecCCCccCCCCCchHHHH---hhcee
Confidence 477999999999999999999876543221 1 11112111111111 35788899994311 1111111 24677
Q ss_pred EEEECCChhh
Q 043946 81 IVYDVTDQES 90 (198)
Q Consensus 81 ~v~d~~~~~s 90 (198)
=|-.+.+++.
T Consensus 380 RVenv~~pe~ 389 (572)
T KOG2423|consen 380 RVENVKNPED 389 (572)
T ss_pred eeeecCCHHH
Confidence 7777777653
No 468
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.16 E-value=0.00034 Score=49.69 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
-.|+|+|++||||||+++.|..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999973
No 469
>PRK13949 shikimate kinase; Provisional
Probab=97.16 E-value=0.00041 Score=48.69 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
+|+|+|++||||||+.+.|..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998864
No 470
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.15 E-value=0.00037 Score=49.25 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|+|+|++|||||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4799999999999999999863
No 471
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.15 E-value=0.0044 Score=51.12 Aligned_cols=20 Identities=45% Similarity=0.637 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
.++-||+||||||.++.|..
T Consensus 48 LlLtGP~G~GKtttv~~La~ 67 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAK 67 (519)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 36689999999999998874
No 472
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.14 E-value=0.0035 Score=44.33 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999988864
No 473
>PRK02496 adk adenylate kinase; Provisional
Probab=97.13 E-value=0.00047 Score=48.97 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
+||+|+|+|||||||+.+.|..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 474
>PRK00625 shikimate kinase; Provisional
Probab=97.13 E-value=0.00042 Score=48.81 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+++|.+||||||+.+.|..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 475
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.12 E-value=0.00035 Score=47.26 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (198)
+..+|+|.|.||+|||||..++..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 457999999999999999999874
No 476
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.0004 Score=49.95 Aligned_cols=20 Identities=50% Similarity=0.612 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
.+++||+|||||||++.|-.
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 48999999999999988753
No 477
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.09 E-value=0.00048 Score=46.54 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+++|++|+|||+|++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 379999999999999998874
No 478
>PRK08233 hypothetical protein; Provisional
Probab=97.08 E-value=0.00059 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+-|+|.|.+|||||||.++|..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999999975
No 479
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.08 E-value=0.00043 Score=49.49 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
+|+|+|+|||||||+.+.|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 480
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.08 E-value=0.00047 Score=51.33 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 58999999999999999875
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.07 E-value=0.00046 Score=49.64 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
|+|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 482
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.07 E-value=0.00054 Score=48.36 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 043946 5 KLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~ 24 (198)
.++|+|+.|+|||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999875
No 483
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.00051 Score=50.12 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999998876
No 484
>PRK06547 hypothetical protein; Provisional
Probab=97.06 E-value=0.0007 Score=47.63 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (198)
..+.|+|.|.+|||||||.+.|...
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4577889999999999999999753
No 485
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.06 E-value=0.00065 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..-|+|.|++|||||||++.|.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999975
No 486
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.05 E-value=0.00064 Score=49.35 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..+.|+|.|++|||||||.+.|..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 487
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.05 E-value=0.00063 Score=47.73 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
.-+.|+|++|+|||||++++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 45799999999999999999854
No 488
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.05 E-value=0.00058 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|+|||||++.|.+.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 489
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.05 E-value=0.00048 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 490
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.04 E-value=0.00054 Score=48.55 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
|+++|+|||||||+.++|..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 491
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00055 Score=47.51 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 043946 4 FKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~ 24 (198)
++|+|-|.||+||||+.++|.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH
Confidence 579999999999999999987
No 492
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.02 E-value=0.0006 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|+|+|||||||+.+.|..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988863
No 493
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.01 E-value=0.00052 Score=50.28 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
|.|.|++|||||||++.|..
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 68999999999999999875
No 494
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.00076 Score=52.24 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++||+|||||||++-+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998764
No 495
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.00 E-value=0.00064 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (198)
+..+|+|+|.+|+|||||++.|...
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
No 496
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.00 E-value=0.00088 Score=47.11 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
+++|+|++|+|||||+|-+.+-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 5799999999999999977653
No 497
>PRK14529 adenylate kinase; Provisional
Probab=96.96 E-value=0.00072 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|+|+|||||||+.+.|..
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988863
No 498
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.96 E-value=0.0022 Score=42.37 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|++-|+-|+|||||.+.+..
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~ 37 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLAR 37 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 499
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.96 E-value=0.00077 Score=49.23 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.95 E-value=0.00069 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|+|+|++|||||||++.|...
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999998764
Done!