Query 043946
Match_columns 198
No_of_seqs 133 out of 1884
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 17:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.6E-44 8.7E-49 261.0 18.8 196 2-197 12-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 8E-40 2.7E-44 236.2 23.5 197 1-197 6-206 (206)
3 1vg8_A RAS-related protein RAB 100.0 7.9E-38 2.7E-42 225.6 19.6 194 2-197 7-207 (207)
4 3tkl_A RAS-related protein RAB 100.0 3.8E-36 1.3E-40 215.0 23.1 171 2-172 15-185 (196)
5 3cpj_B GTP-binding protein YPT 100.0 1.3E-36 4.5E-41 222.0 20.0 170 1-170 11-180 (223)
6 2bov_A RAla, RAS-related prote 100.0 3.7E-36 1.2E-40 216.7 21.1 169 2-171 13-182 (206)
7 2fu5_C RAS-related protein RAB 100.0 2.2E-36 7.6E-41 214.1 19.2 170 1-170 6-175 (183)
8 2gf9_A RAS-related protein RAB 100.0 1.6E-35 5.5E-40 210.8 23.3 168 1-168 20-187 (189)
9 2ew1_A RAS-related protein RAB 100.0 8.4E-36 2.9E-40 214.5 21.9 170 1-170 24-193 (201)
10 1zbd_A Rabphilin-3A; G protein 100.0 2.2E-35 7.6E-40 212.3 23.1 171 1-171 6-176 (203)
11 2a5j_A RAS-related protein RAB 100.0 1.8E-35 6.1E-40 211.0 22.1 170 1-170 19-188 (191)
12 2bme_A RAB4A, RAS-related prot 100.0 1.8E-35 6E-40 209.9 21.8 172 1-172 8-179 (186)
13 2hup_A RAS-related protein RAB 100.0 9.6E-36 3.3E-40 214.2 20.5 169 1-169 27-196 (201)
14 3tw8_B RAS-related protein RAB 100.0 3.8E-35 1.3E-39 207.0 22.9 170 1-171 7-176 (181)
15 1z08_A RAS-related protein RAB 100.0 1.1E-35 3.7E-40 207.9 19.8 166 1-166 4-169 (170)
16 1g16_A RAS-related protein SEC 100.0 2E-35 6.8E-40 206.5 20.6 167 1-168 1-167 (170)
17 1z0f_A RAB14, member RAS oncog 100.0 2.8E-35 9.7E-40 207.3 20.5 166 1-166 13-178 (179)
18 2o52_A RAS-related protein RAB 100.0 2E-35 6.8E-40 212.3 19.9 172 1-172 23-194 (200)
19 2efe_B Small GTP-binding prote 100.0 5.8E-35 2E-39 206.3 21.5 165 2-166 11-175 (181)
20 2g6b_A RAS-related protein RAB 100.0 1E-34 3.6E-39 204.8 22.5 167 1-167 8-175 (180)
21 3dz8_A RAS-related protein RAB 100.0 3.6E-36 1.2E-40 214.6 14.8 169 1-169 21-189 (191)
22 2oil_A CATX-8, RAS-related pro 100.0 6.2E-35 2.1E-39 208.4 21.1 169 1-169 23-191 (193)
23 1z2a_A RAS-related protein RAB 100.0 5.5E-35 1.9E-39 203.8 19.5 165 1-166 3-167 (168)
24 1z0j_A RAB-22, RAS-related pro 100.0 1.5E-34 5.2E-39 202.0 21.4 163 2-164 5-167 (170)
25 1r2q_A RAS-related protein RAB 100.0 1.1E-34 3.8E-39 202.5 20.2 163 2-164 5-167 (170)
26 2il1_A RAB12; G-protein, GDP, 100.0 3.6E-35 1.2E-39 209.7 17.7 167 1-167 24-191 (192)
27 3bc1_A RAS-related protein RAB 100.0 2.3E-34 7.7E-39 205.2 21.7 170 1-170 9-189 (195)
28 1ek0_A Protein (GTP-binding pr 100.0 7E-35 2.4E-39 203.6 18.6 163 2-164 2-167 (170)
29 2fg5_A RAB-22B, RAS-related pr 100.0 5.6E-35 1.9E-39 208.6 18.3 166 1-166 21-186 (192)
30 3t5g_A GTP-binding protein RHE 100.0 3.1E-34 1E-38 202.7 21.6 166 2-168 5-171 (181)
31 3kkq_A RAS-related protein M-R 100.0 3.7E-34 1.3E-38 202.6 22.0 164 2-166 17-182 (183)
32 2j0v_A RAC-like GTP-binding pr 100.0 3.8E-35 1.3E-39 212.5 17.1 167 2-170 8-184 (212)
33 2nzj_A GTP-binding protein REM 100.0 3.8E-34 1.3E-38 200.9 21.5 169 1-170 2-173 (175)
34 3cph_A RAS-related protein SEC 100.0 7.5E-34 2.6E-38 205.6 22.9 168 2-170 19-186 (213)
35 2fn4_A P23, RAS-related protei 100.0 3.6E-34 1.2E-38 202.0 20.8 167 2-169 8-175 (181)
36 3q85_A GTP-binding protein REM 100.0 2.6E-34 9E-39 200.7 19.6 165 3-167 2-168 (169)
37 2f7s_A C25KG, RAS-related prot 100.0 8.5E-35 2.9E-39 211.4 17.3 170 1-170 23-203 (217)
38 1wms_A RAB-9, RAB9, RAS-relate 100.0 7.9E-34 2.7E-38 199.7 21.5 164 2-166 6-174 (177)
39 3cbq_A GTP-binding protein REM 100.0 2.2E-34 7.6E-39 206.1 18.8 166 2-167 22-189 (195)
40 2y8e_A RAB-protein 6, GH09086P 100.0 2.5E-34 8.4E-39 202.5 18.7 163 3-165 14-176 (179)
41 4dsu_A GTPase KRAS, isoform 2B 100.0 1E-33 3.5E-38 201.1 22.0 168 2-171 3-171 (189)
42 2p5s_A RAS and EF-hand domain 100.0 1.2E-34 4.2E-39 208.0 16.9 165 2-166 27-197 (199)
43 2gf0_A GTP-binding protein DI- 100.0 1.9E-34 6.4E-39 206.6 17.8 164 2-167 7-172 (199)
44 1z06_A RAS-related protein RAB 100.0 5.4E-34 1.8E-38 202.9 19.8 165 2-166 19-188 (189)
45 2hxs_A RAB-26, RAS-related pro 100.0 1.3E-34 4.4E-39 203.9 16.4 166 2-167 5-174 (178)
46 3reg_A RHO-like small GTPase; 100.0 2E-33 6.7E-38 200.8 21.8 165 2-168 22-190 (194)
47 3c5c_A RAS-like protein 12; GD 100.0 5.4E-34 1.8E-38 202.8 18.8 163 2-166 20-186 (187)
48 3clv_A RAB5 protein, putative; 100.0 2.2E-33 7.7E-38 201.6 22.2 164 2-168 6-206 (208)
49 3q72_A GTP-binding protein RAD 100.0 1.8E-33 6.3E-38 195.9 20.7 163 3-167 2-165 (166)
50 1x3s_A RAS-related protein RAB 100.0 2.3E-33 7.7E-38 200.3 21.7 165 3-168 15-180 (195)
51 3oes_A GTPase rhebl1; small GT 100.0 5.9E-34 2E-38 204.7 18.4 166 2-168 23-189 (201)
52 1ky3_A GTP-binding protein YPT 100.0 1.2E-33 4.1E-38 199.5 19.7 167 2-168 7-180 (182)
53 4djt_A GTP-binding nuclear pro 100.0 3.3E-34 1.1E-38 208.4 17.2 171 2-172 10-181 (218)
54 1u8z_A RAS-related protein RAL 100.0 1.4E-33 4.6E-38 196.6 19.1 163 3-166 4-167 (168)
55 3ihw_A Centg3; RAS, centaurin, 100.0 4E-33 1.4E-37 197.8 21.3 160 2-168 19-182 (184)
56 2a9k_A RAS-related protein RAL 100.0 2.7E-33 9.3E-38 198.4 20.3 168 2-170 17-185 (187)
57 3q3j_B RHO-related GTP-binding 100.0 1.4E-33 4.8E-38 204.8 19.1 166 2-169 26-206 (214)
58 1c1y_A RAS-related protein RAP 100.0 1.6E-33 5.5E-38 196.2 18.6 163 2-165 2-166 (167)
59 1kao_A RAP2A; GTP-binding prot 100.0 2.3E-33 8E-38 195.2 18.6 163 3-166 3-166 (167)
60 2yc2_C IFT27, small RAB-relate 100.0 4.2E-34 1.4E-38 206.1 15.0 168 2-169 19-195 (208)
61 2g3y_A GTP-binding protein GEM 100.0 7.2E-33 2.5E-37 200.2 21.1 166 2-168 36-205 (211)
62 2iwr_A Centaurin gamma 1; ANK 100.0 7.1E-33 2.4E-37 195.2 20.4 162 2-170 6-173 (178)
63 2q3h_A RAS homolog gene family 100.0 9.2E-33 3.1E-37 198.3 21.2 166 2-169 19-198 (201)
64 2atx_A Small GTP binding prote 100.0 1.3E-32 4.3E-37 196.6 21.6 162 2-165 17-192 (194)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 4.6E-33 1.6E-37 197.4 18.8 163 2-166 6-183 (184)
66 2atv_A RERG, RAS-like estrogen 100.0 6.1E-33 2.1E-37 198.6 19.5 165 2-168 27-193 (196)
67 3l0i_B RAS-related protein RAB 100.0 8.8E-36 3E-40 213.9 3.6 166 1-166 31-196 (199)
68 3con_A GTPase NRAS; structural 100.0 6.1E-32 2.1E-36 192.3 23.2 165 3-169 21-186 (190)
69 1gwn_A RHO-related GTP-binding 100.0 9.5E-33 3.3E-37 199.1 18.8 163 2-166 27-204 (205)
70 2gco_A H9, RHO-related GTP-bin 100.0 3.6E-32 1.2E-36 195.4 21.4 163 2-166 24-200 (201)
71 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.5E-32 5E-37 194.6 18.9 163 2-166 4-180 (186)
72 2erx_A GTP-binding protein DI- 100.0 6E-33 2E-37 194.1 16.0 163 2-165 2-166 (172)
73 2ce2_X GTPase HRAS; signaling 100.0 8.4E-32 2.9E-36 187.0 21.3 162 3-166 3-165 (166)
74 2j1l_A RHO-related GTP-binding 100.0 2.6E-32 8.9E-37 198.0 19.4 164 2-167 33-210 (214)
75 2fv8_A H6, RHO-related GTP-bin 100.0 5.6E-32 1.9E-36 195.2 20.6 164 2-167 24-201 (207)
76 2cjw_A GTP-binding protein GEM 100.0 1.2E-31 4.1E-36 191.4 21.3 166 2-168 5-174 (192)
77 2f9l_A RAB11B, member RAS onco 100.0 5.6E-31 1.9E-35 188.9 22.7 171 1-171 3-173 (199)
78 3t1o_A Gliding protein MGLA; G 100.0 9.6E-33 3.3E-37 197.3 13.5 165 2-170 13-196 (198)
79 3gj0_A GTP-binding nuclear pro 100.0 1.4E-32 4.8E-37 200.3 14.0 165 2-169 14-178 (221)
80 3bwd_D RAC-like GTP-binding pr 100.0 9.3E-33 3.2E-37 195.1 12.6 162 2-165 7-180 (182)
81 4gzl_A RAS-related C3 botulinu 100.0 8.6E-32 2.9E-36 193.9 17.8 161 2-164 29-203 (204)
82 4bas_A ADP-ribosylation factor 100.0 1.1E-31 3.7E-36 192.3 16.7 161 2-168 16-191 (199)
83 2h57_A ADP-ribosylation factor 100.0 1.4E-30 4.7E-35 185.5 17.7 159 2-166 20-187 (190)
84 1ksh_A ARF-like protein 2; sma 100.0 2.2E-30 7.5E-35 183.7 18.6 159 2-167 17-181 (186)
85 1upt_A ARL1, ADP-ribosylation 100.0 9.6E-31 3.3E-35 182.9 15.0 158 2-166 6-169 (171)
86 1oix_A RAS-related protein RAB 100.0 1.1E-29 3.6E-34 181.2 20.6 164 1-164 27-190 (191)
87 1r8s_A ADP-ribosylation factor 100.0 1.4E-31 4.9E-36 185.9 10.3 156 4-166 1-162 (164)
88 1f6b_A SAR1; gtpases, N-termin 100.0 1.2E-30 4.2E-35 187.0 15.4 154 3-163 25-196 (198)
89 1zd9_A ADP-ribosylation factor 100.0 1.9E-30 6.4E-35 184.5 15.7 159 2-166 21-185 (188)
90 1m2o_B GTP-binding protein SAR 100.0 4.2E-30 1.4E-34 183.1 17.2 154 3-163 23-189 (190)
91 1zj6_A ADP-ribosylation factor 100.0 2.4E-30 8.2E-35 183.7 15.0 158 2-166 15-178 (187)
92 1moz_A ARL1, ADP-ribosylation 100.0 5.4E-30 1.8E-34 181.1 15.9 160 2-168 17-182 (183)
93 2wkq_A NPH1-1, RAS-related C3 100.0 2.1E-29 7.2E-34 193.7 20.3 163 2-166 154-330 (332)
94 1fzq_A ADP-ribosylation factor 100.0 4.8E-30 1.7E-34 181.4 15.2 158 2-166 15-178 (181)
95 2h17_A ADP-ribosylation factor 100.0 4E-30 1.4E-34 181.7 14.8 155 2-163 20-180 (181)
96 2b6h_A ADP-ribosylation factor 100.0 4.9E-31 1.7E-35 188.3 10.1 157 2-165 28-190 (192)
97 2x77_A ADP-ribosylation factor 100.0 1.4E-30 4.8E-35 185.2 11.3 159 2-167 21-185 (189)
98 3th5_A RAS-related C3 botulinu 99.9 2.8E-32 9.6E-37 196.3 0.0 161 2-164 29-203 (204)
99 2zej_A Dardarin, leucine-rich 100.0 1.5E-30 5E-35 184.6 8.5 163 3-166 2-178 (184)
100 2lkc_A Translation initiation 100.0 3.9E-29 1.3E-33 175.8 15.4 158 2-168 7-173 (178)
101 3llu_A RAS-related GTP-binding 100.0 8.8E-30 3E-34 182.2 11.2 160 2-164 19-195 (196)
102 2qu8_A Putative nucleolar GTP- 100.0 1.2E-28 4E-33 180.4 15.8 165 2-169 28-208 (228)
103 2wji_A Ferrous iron transport 100.0 7.9E-29 2.7E-33 172.7 13.6 153 3-164 3-163 (165)
104 3c5h_A Glucocorticoid receptor 100.0 1.1E-29 3.8E-34 188.8 8.1 162 2-165 18-254 (255)
105 2fh5_B SR-beta, signal recogni 100.0 1.5E-27 5E-32 172.8 15.9 159 2-163 6-213 (214)
106 3o47_A ADP-ribosylation factor 100.0 1.1E-27 3.7E-32 184.0 14.7 158 2-166 164-327 (329)
107 3lvq_E ARF-GAP with SH3 domain 100.0 4.6E-27 1.6E-31 189.9 18.8 163 2-171 321-489 (497)
108 3r7w_A Gtpase1, GTP-binding pr 100.0 7.9E-28 2.7E-32 183.2 13.4 159 2-164 2-179 (307)
109 2cxx_A Probable GTP-binding pr 100.0 4.5E-28 1.5E-32 172.1 10.5 157 4-169 2-187 (190)
110 2wjg_A FEOB, ferrous iron tran 99.9 9E-28 3.1E-32 170.4 11.0 157 3-168 7-171 (188)
111 3a1s_A Iron(II) transport prot 99.9 2.9E-27 9.9E-32 175.8 12.9 155 2-165 4-166 (258)
112 1svi_A GTP-binding protein YSX 99.9 1.2E-27 4E-32 170.8 9.7 157 2-165 22-194 (195)
113 2dyk_A GTP-binding protein; GT 99.9 4.6E-27 1.6E-31 162.5 12.2 150 4-164 2-160 (161)
114 3iby_A Ferrous iron transport 99.9 2.2E-27 7.7E-32 176.2 9.2 151 4-163 2-164 (256)
115 3b1v_A Ferrous iron uptake tra 99.9 2.5E-27 8.6E-32 177.2 9.4 154 1-164 1-162 (272)
116 2gj8_A MNME, tRNA modification 99.9 2.9E-27 9.8E-32 165.9 9.2 153 3-165 4-165 (172)
117 3iev_A GTP-binding protein ERA 99.9 5.1E-26 1.8E-30 173.2 16.1 159 3-166 10-182 (308)
118 3r7w_B Gtpase2, GTP-binding pr 99.9 1.1E-27 3.8E-32 181.4 5.3 155 5-166 1-174 (331)
119 3dpu_A RAB family protein; roc 99.9 3E-27 1E-31 192.4 7.9 162 2-167 40-209 (535)
120 3k53_A Ferrous iron transport 99.9 2.6E-26 8.9E-31 172.1 12.2 158 2-167 2-167 (271)
121 3i8s_A Ferrous iron transport 99.9 5.7E-27 2E-31 175.8 7.8 154 3-165 3-168 (274)
122 3pqc_A Probable GTP-binding pr 99.9 3.2E-26 1.1E-30 163.0 11.3 155 2-166 22-194 (195)
123 4dhe_A Probable GTP-binding pr 99.9 4.8E-26 1.6E-30 165.7 8.2 162 2-167 28-212 (223)
124 3gee_A MNME, tRNA modification 99.9 3.9E-25 1.3E-29 176.6 13.8 156 3-165 233-397 (476)
125 2hjg_A GTP-binding protein ENG 99.9 1.5E-25 5E-30 178.3 11.1 161 2-168 174-351 (436)
126 1mky_A Probable GTP-binding pr 99.9 4.8E-25 1.6E-29 175.5 13.9 179 4-194 2-195 (439)
127 2e87_A Hypothetical protein PH 99.9 3.2E-24 1.1E-28 166.5 17.3 161 2-167 166-337 (357)
128 4dcu_A GTP-binding protein ENG 99.9 4.2E-25 1.4E-29 176.6 10.1 162 2-169 194-372 (456)
129 1nrj_B SR-beta, signal recogni 99.9 1.1E-25 3.8E-30 163.3 5.6 142 2-152 11-170 (218)
130 1wf3_A GTP-binding protein; GT 99.9 6.2E-24 2.1E-28 161.1 13.3 154 3-165 7-172 (301)
131 1xzp_A Probable tRNA modificat 99.9 6E-24 2.1E-28 170.0 12.8 153 3-166 243-405 (482)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.3E-24 4.6E-29 166.9 8.7 158 4-166 159-330 (342)
133 3qq5_A Small GTP-binding prote 99.9 6.7E-25 2.3E-29 172.7 6.3 157 2-167 33-197 (423)
134 3cb4_D GTP-binding protein LEP 99.9 2.8E-23 9.5E-28 169.7 13.8 159 1-165 2-181 (599)
135 1wb1_A Translation elongation 99.9 2.4E-23 8.3E-28 167.0 12.9 154 3-165 19-188 (482)
136 2hjg_A GTP-binding protein ENG 99.9 1E-24 3.5E-29 173.4 4.7 178 3-194 3-190 (436)
137 3lxx_A GTPase IMAP family memb 99.9 7.8E-23 2.7E-27 150.5 14.0 161 2-166 28-214 (239)
138 2ywe_A GTP-binding protein LEP 99.9 6.4E-23 2.2E-27 167.3 14.1 158 2-165 5-183 (600)
139 1s0u_A EIF-2-gamma, translatio 99.9 1.4E-22 4.7E-27 159.9 15.5 158 2-165 7-197 (408)
140 2xtp_A GTPase IMAP family memb 99.9 8.5E-23 2.9E-27 152.0 13.4 161 2-167 21-209 (260)
141 3j2k_7 ERF3, eukaryotic polype 99.9 6.7E-23 2.3E-27 162.9 12.8 155 2-158 16-217 (439)
142 3geh_A MNME, tRNA modification 99.9 1.5E-23 5.2E-28 166.9 9.0 152 3-166 224-384 (462)
143 3sjy_A Translation initiation 99.9 2.8E-22 9.5E-27 157.9 16.0 161 2-165 7-191 (403)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 3.8E-22 1.3E-26 154.7 16.2 159 6-167 182-355 (364)
145 3izy_P Translation initiation 99.9 4.5E-25 1.5E-29 177.9 -1.3 159 2-165 3-167 (537)
146 1kk1_A EIF2gamma; initiation o 99.9 1.7E-22 5.7E-27 159.6 12.8 158 2-165 9-199 (410)
147 3p26_A Elongation factor 1 alp 99.9 6.8E-23 2.3E-27 164.8 10.5 150 3-156 33-228 (483)
148 1mky_A Probable GTP-binding pr 99.9 6.2E-22 2.1E-26 157.5 15.4 160 2-167 179-356 (439)
149 1ega_A Protein (GTP-binding pr 99.9 6.2E-22 2.1E-26 150.2 14.6 156 3-165 8-174 (301)
150 3tr5_A RF-3, peptide chain rel 99.9 2.1E-22 7.2E-27 162.8 11.3 116 2-123 12-149 (528)
151 3t5d_A Septin-7; GTP-binding p 99.9 7.6E-23 2.6E-27 153.4 8.1 159 2-164 7-202 (274)
152 2qag_A Septin-2, protein NEDD5 99.9 1.7E-23 5.8E-28 162.4 4.1 164 2-171 36-238 (361)
153 3lxw_A GTPase IMAP family memb 99.9 1.8E-21 6.3E-26 143.8 14.6 161 2-166 20-208 (247)
154 4dcu_A GTP-binding protein ENG 99.9 3E-23 1E-27 165.8 4.8 179 3-194 23-210 (456)
155 1cip_A Protein (guanine nucleo 99.9 8.3E-22 2.9E-26 152.0 12.5 125 42-168 185-346 (353)
156 1g7s_A Translation initiation 99.9 1.4E-21 4.7E-26 159.8 14.3 160 2-168 4-220 (594)
157 2ged_A SR-beta, signal recogni 99.9 6.8E-22 2.3E-26 140.6 10.0 114 2-124 47-172 (193)
158 1d2e_A Elongation factor TU (E 99.9 8.8E-22 3E-26 154.8 11.4 156 3-164 3-193 (397)
159 2elf_A Protein translation elo 99.9 3.4E-22 1.2E-26 155.4 8.7 147 5-167 23-181 (370)
160 1zo1_I IF2, translation initia 99.9 4.4E-24 1.5E-28 170.8 -2.2 152 2-162 3-163 (501)
161 1zun_B Sulfate adenylate trans 99.9 4.8E-22 1.7E-26 157.9 9.5 150 3-158 24-216 (434)
162 1jny_A EF-1-alpha, elongation 99.9 9.6E-23 3.3E-27 161.9 4.6 154 2-158 5-205 (435)
163 1r5b_A Eukaryotic peptide chai 99.9 1.5E-22 5.2E-27 162.0 5.4 154 2-157 42-243 (467)
164 2c78_A Elongation factor TU-A; 99.9 9.5E-22 3.2E-26 155.0 9.6 145 2-152 10-180 (405)
165 3izq_1 HBS1P, elongation facto 99.9 6.2E-22 2.1E-26 162.6 8.2 152 3-156 167-362 (611)
166 3ohm_A Guanine nucleotide-bind 99.9 8.2E-21 2.8E-25 144.5 12.7 127 41-169 158-321 (327)
167 1f60_A Elongation factor EEF1A 99.8 6.5E-22 2.2E-26 158.0 5.4 149 3-156 7-202 (458)
168 2aka_B Dynamin-1; fusion prote 99.8 1.4E-21 4.7E-26 148.2 3.9 159 2-164 25-251 (299)
169 4fid_A G protein alpha subunit 99.8 4.3E-20 1.5E-24 141.1 11.6 124 41-166 152-328 (340)
170 3mca_A HBS1, elongation factor 99.8 4.2E-22 1.4E-26 163.2 -0.1 147 3-154 177-371 (592)
171 1pui_A ENGB, probable GTP-bind 99.8 1.8E-20 6.2E-25 134.9 8.3 155 3-166 26-199 (210)
172 3avx_A Elongation factor TS, e 99.8 5.6E-20 1.9E-24 157.4 12.1 158 3-164 296-484 (1289)
173 3def_A T7I23.11 protein; chlor 99.8 3E-19 1E-23 133.1 14.4 123 2-127 35-170 (262)
174 2h5e_A Peptide chain release f 99.8 7.2E-19 2.5E-23 142.3 16.0 116 2-123 12-149 (529)
175 1udx_A The GTP-binding protein 99.8 2E-19 6.7E-24 141.3 12.0 161 5-169 159-328 (416)
176 1dar_A EF-G, elongation factor 99.8 4.5E-19 1.6E-23 147.7 13.2 115 2-122 11-143 (691)
177 2dy1_A Elongation factor G; tr 99.8 2.1E-19 7.3E-24 149.2 11.0 113 3-121 9-139 (665)
178 2j69_A Bacterial dynamin-like 99.8 5.3E-19 1.8E-23 147.4 13.1 162 2-166 68-325 (695)
179 3t34_A Dynamin-related protein 99.8 4.8E-20 1.6E-24 143.2 5.5 158 3-163 34-258 (360)
180 1wxq_A GTP-binding protein; st 99.8 1.3E-19 4.4E-24 142.0 7.7 85 4-88 1-114 (397)
181 1h65_A Chloroplast outer envel 99.8 4.6E-18 1.6E-22 127.1 15.5 121 2-125 38-171 (270)
182 1jwy_B Dynamin A GTPase domain 99.8 3.6E-19 1.2E-23 135.8 9.3 112 52-166 131-262 (315)
183 2qnr_A Septin-2, protein NEDD5 99.8 4.1E-20 1.4E-24 140.1 3.8 164 2-170 17-218 (301)
184 2xex_A Elongation factor G; GT 99.8 4.4E-18 1.5E-22 141.9 15.1 115 2-122 9-141 (693)
185 2rdo_7 EF-G, elongation factor 99.8 1.1E-17 3.7E-22 139.7 16.6 117 2-122 9-148 (704)
186 1zcb_A G alpha I/13; GTP-bindi 99.8 2.8E-18 9.6E-23 132.7 11.2 127 41-169 192-356 (362)
187 2qag_C Septin-7; cell cycle, c 99.8 1.8E-18 6.2E-23 135.9 8.9 158 2-163 30-224 (418)
188 2xtz_A Guanine nucleotide-bind 99.8 4.5E-18 1.6E-22 131.1 10.3 128 42-169 169-348 (354)
189 3vqt_A RF-3, peptide chain rel 99.7 2.5E-17 8.5E-22 133.9 14.8 114 4-123 32-167 (548)
190 1u0l_A Probable GTPase ENGC; p 99.7 7.5E-19 2.6E-23 133.2 5.4 133 18-161 32-168 (301)
191 1azs_C GS-alpha; complex (lyas 99.7 1.5E-17 5.3E-22 129.7 12.2 127 41-169 208-388 (402)
192 2wsm_A Hydrogenase expression/ 99.7 3.9E-18 1.3E-22 123.7 6.9 154 3-167 30-215 (221)
193 1jal_A YCHF protein; nucleotid 99.7 1.1E-16 3.9E-21 123.2 13.8 147 3-149 2-240 (363)
194 3p32_A Probable GTPase RV1496/ 99.7 1E-17 3.6E-22 129.8 5.8 104 52-166 172-284 (355)
195 2x2e_A Dynamin-1; nitration, h 99.7 9E-18 3.1E-22 130.1 3.6 156 3-162 31-254 (353)
196 2hf9_A Probable hydrogenase ni 99.7 8.2E-18 2.8E-22 122.4 2.1 154 2-166 37-224 (226)
197 1n0u_A EF-2, elongation factor 99.7 1.5E-16 5.2E-21 135.1 8.8 116 2-121 18-163 (842)
198 2dby_A GTP-binding protein; GD 99.6 4.6E-16 1.6E-20 120.5 9.4 154 4-157 2-253 (368)
199 4a9a_A Ribosome-interacting GT 99.6 4.4E-15 1.5E-19 115.0 14.4 151 4-158 73-240 (376)
200 2qpt_A EH domain-containing pr 99.6 2.5E-16 8.7E-21 128.1 6.9 119 2-123 64-233 (550)
201 3j25_A Tetracycline resistance 99.6 5.5E-17 1.9E-21 134.2 2.7 113 4-122 3-133 (638)
202 2www_A Methylmalonic aciduria 99.6 4.3E-15 1.5E-19 114.7 11.7 103 52-166 167-279 (349)
203 4fn5_A EF-G 1, elongation fact 99.6 1E-14 3.5E-19 122.2 13.9 115 4-122 14-151 (709)
204 2p67_A LAO/AO transport system 99.6 9.9E-16 3.4E-20 118.0 6.0 103 52-165 149-260 (341)
205 1yrb_A ATP(GTP)binding protein 99.6 1E-14 3.5E-19 108.3 10.1 112 52-166 109-257 (262)
206 3zvr_A Dynamin-1; hydrolase, D 99.6 4.6E-15 1.6E-19 123.6 7.4 157 3-163 51-275 (772)
207 2qm8_A GTPase/ATPase; G protei 99.5 1.3E-13 4.6E-18 105.9 9.5 103 52-165 148-260 (337)
208 2yv5_A YJEQ protein; hydrolase 99.4 2.6E-13 8.9E-18 102.8 8.6 97 62-161 66-164 (302)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 6.1E-12 2.1E-16 98.0 14.4 85 3-87 20-127 (392)
210 3l82_B F-box only protein 4; T 99.4 1.1E-13 3.8E-18 97.8 3.2 105 60-166 110-223 (227)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 3.3E-13 1.1E-17 105.0 5.0 86 3-88 22-129 (396)
212 3l2o_B F-box only protein 4; s 99.3 2.3E-12 7.8E-17 95.4 5.5 107 59-167 194-309 (312)
213 3h2y_A GTPase family protein; 99.1 4E-11 1.4E-15 93.1 5.7 114 61-194 55-175 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.1 4.3E-12 1.5E-16 98.7 -0.1 140 4-153 163-318 (369)
215 3h2y_A GTPase family protein; 99.1 4.1E-12 1.4E-16 98.7 -1.3 137 4-148 161-312 (368)
216 1puj_A YLQF, conserved hypothe 99.1 5.6E-11 1.9E-15 89.1 3.5 129 56-194 3-135 (282)
217 2qag_B Septin-6, protein NEDD5 99.0 2.7E-10 9.3E-15 89.4 6.5 139 4-147 43-217 (427)
218 3ec1_A YQEH GTPase; atnos1, at 99.0 9.8E-11 3.3E-15 91.0 3.3 114 61-194 57-177 (369)
219 3sop_A Neuronal-specific septi 99.0 8E-10 2.7E-14 82.3 7.3 137 3-144 2-178 (270)
220 2j37_W Signal recognition part 99.0 2.1E-10 7.2E-15 92.1 3.8 101 52-163 184-310 (504)
221 1tq4_A IIGP1, interferon-induc 98.9 3E-08 1E-12 77.9 13.4 154 4-166 70-253 (413)
222 1puj_A YLQF, conserved hypothe 98.7 1.6E-08 5.6E-13 75.7 5.3 57 2-63 119-176 (282)
223 3cnl_A YLQF, putative uncharac 98.6 1.1E-08 3.8E-13 75.8 2.9 57 4-64 100-156 (262)
224 3cnl_A YLQF, putative uncharac 98.6 3.1E-09 1E-13 78.8 -1.3 93 59-162 4-97 (262)
225 3dm5_A SRP54, signal recogniti 98.6 8.7E-08 3E-12 75.7 6.8 86 52-147 183-274 (443)
226 2v3c_C SRP54, signal recogniti 98.6 7.7E-08 2.6E-12 76.1 5.7 83 52-145 181-271 (432)
227 1f5n_A Interferon-induced guan 98.4 3.9E-07 1.3E-11 74.5 6.1 63 2-64 37-103 (592)
228 1t9h_A YLOQ, probable GTPase E 98.4 1.4E-07 4.9E-12 71.2 2.7 89 68-159 79-170 (307)
229 3kl4_A SRP54, signal recogniti 98.3 1.2E-07 4.2E-12 74.7 0.8 90 52-153 180-277 (433)
230 1j8m_F SRP54, signal recogniti 98.2 2.3E-06 7.7E-11 64.5 6.5 91 52-155 181-280 (297)
231 3szr_A Interferon-induced GTP- 98.2 2.3E-06 7.9E-11 70.6 6.2 23 5-27 47-69 (608)
232 2rcn_A Probable GTPase ENGC; Y 98.0 1.5E-05 5E-10 61.5 7.7 85 72-160 127-213 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.9 3.6E-07 1.2E-11 73.2 -3.4 112 3-119 39-160 (469)
234 3e70_C DPA, signal recognition 97.9 1.1E-05 3.7E-10 61.6 4.9 91 53-155 213-309 (328)
235 3q5d_A Atlastin-1; G protein, 97.8 3.4E-05 1.1E-09 61.2 6.5 23 3-25 67-89 (447)
236 4dzz_A Plasmid partitioning pr 97.7 2E-05 7E-10 55.7 3.4 85 52-143 76-162 (206)
237 3cwq_A Para family chromosome 97.7 0.00029 9.8E-09 50.1 8.9 85 52-143 68-153 (209)
238 1ye8_A Protein THEP1, hypothet 97.6 3E-05 1E-09 53.9 3.1 22 4-25 1-22 (178)
239 1t9h_A YLOQ, probable GTPase E 97.6 2E-05 6.7E-10 59.5 2.1 22 5-26 175-196 (307)
240 1kgd_A CASK, peripheral plasma 97.5 4.7E-05 1.6E-09 52.9 2.9 21 5-25 7-27 (180)
241 2rcn_A Probable GTPase ENGC; Y 97.5 9.9E-05 3.4E-09 56.8 4.2 23 5-27 217-239 (358)
242 1lvg_A Guanylate kinase, GMP k 97.5 6.5E-05 2.2E-09 53.0 2.9 21 5-25 6-26 (198)
243 2xxa_A Signal recognition part 97.4 0.0017 5.7E-08 51.4 10.9 81 52-143 184-271 (433)
244 2yv5_A YJEQ protein; hydrolase 97.4 0.00035 1.2E-08 52.6 6.8 20 5-24 167-186 (302)
245 1zp6_A Hypothetical protein AT 97.4 9E-05 3.1E-09 51.7 3.1 22 5-26 11-32 (191)
246 3a00_A Guanylate kinase, GMP k 97.4 8.6E-05 3E-09 51.8 2.8 20 6-25 4-23 (186)
247 3tr0_A Guanylate kinase, GMP k 97.4 9.6E-05 3.3E-09 52.1 2.9 22 5-26 9-30 (205)
248 1ex7_A Guanylate kinase; subst 97.3 0.00012 4E-09 51.2 3.1 20 6-25 4-23 (186)
249 3ney_A 55 kDa erythrocyte memb 97.3 0.00011 3.8E-09 51.8 2.9 21 5-25 21-41 (197)
250 1s96_A Guanylate kinase, GMP k 97.3 0.00011 3.8E-09 52.8 2.9 22 5-26 18-39 (219)
251 1znw_A Guanylate kinase, GMP k 97.3 0.00011 3.9E-09 52.1 2.9 21 6-26 23-43 (207)
252 4gp7_A Metallophosphoesterase; 97.3 0.00012 4E-09 50.5 2.7 19 6-24 12-30 (171)
253 1ly1_A Polynucleotide kinase; 97.3 0.00017 6E-09 49.6 3.6 23 3-25 2-24 (181)
254 1z6g_A Guanylate kinase; struc 97.3 0.00012 4.3E-09 52.4 2.9 22 5-26 25-46 (218)
255 3tau_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 51.7 3.0 22 5-26 10-31 (208)
256 3c8u_A Fructokinase; YP_612366 97.3 0.00014 4.9E-09 51.6 2.9 22 4-25 23-44 (208)
257 2qor_A Guanylate kinase; phosp 97.3 0.00016 5.6E-09 51.1 3.1 21 5-25 14-34 (204)
258 3fb4_A Adenylate kinase; psych 97.2 0.00017 5.8E-09 51.4 3.1 22 4-25 1-22 (216)
259 3sr0_A Adenylate kinase; phosp 97.2 0.00018 6.2E-09 51.1 3.2 22 4-25 1-22 (206)
260 3lw7_A Adenylate kinase relate 97.2 0.00018 6.2E-09 49.1 3.1 20 4-23 2-21 (179)
261 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.3E-09 51.2 3.2 22 4-25 1-22 (216)
262 1kag_A SKI, shikimate kinase I 97.2 0.00019 6.6E-09 49.1 2.9 22 4-25 5-26 (173)
263 1htw_A HI0065; nucleotide-bind 97.2 0.0002 7E-09 48.6 2.9 22 5-26 35-56 (158)
264 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.3E-09 48.7 3.0 21 5-25 3-23 (173)
265 2bdt_A BH3686; alpha-beta prot 97.2 0.00022 7.5E-09 49.7 3.0 21 5-25 4-24 (189)
266 3tif_A Uncharacterized ABC tra 97.2 0.00021 7.2E-09 51.9 3.0 22 5-26 33-54 (235)
267 2j41_A Guanylate kinase; GMP, 97.2 0.00021 7E-09 50.4 2.9 23 4-26 7-29 (207)
268 2bbw_A Adenylate kinase 4, AK4 97.2 0.00025 8.5E-09 51.7 3.3 21 4-24 28-48 (246)
269 4eun_A Thermoresistant glucoki 97.1 0.00024 8.3E-09 50.1 2.9 21 5-25 31-51 (200)
270 2pcj_A ABC transporter, lipopr 97.1 0.00025 8.5E-09 51.1 3.0 21 6-26 33-53 (224)
271 1e4v_A Adenylate kinase; trans 97.1 0.00027 9.3E-09 50.3 3.1 22 4-25 1-22 (214)
272 2jaq_A Deoxyguanosine kinase; 97.1 0.0003 1E-08 49.4 3.2 22 4-25 1-22 (205)
273 2onk_A Molybdate/tungstate ABC 97.1 0.0003 1E-08 51.2 3.1 22 5-26 26-47 (240)
274 1nks_A Adenylate kinase; therm 97.1 0.00036 1.2E-08 48.5 3.5 21 5-25 3-23 (194)
275 1qhx_A CPT, protein (chloramph 97.1 0.00031 1.1E-08 48.3 3.1 22 4-25 4-25 (178)
276 2if2_A Dephospho-COA kinase; a 97.1 0.0003 1E-08 49.6 3.0 22 4-25 2-23 (204)
277 3vaa_A Shikimate kinase, SK; s 97.1 0.00035 1.2E-08 49.2 3.3 21 5-25 27-47 (199)
278 1np6_A Molybdopterin-guanine d 97.1 0.00031 1.1E-08 48.5 2.9 22 4-25 7-28 (174)
279 2i3b_A HCR-ntpase, human cance 97.1 0.00028 9.7E-09 49.4 2.7 21 5-25 3-23 (189)
280 1b0u_A Histidine permease; ABC 97.1 0.00031 1E-08 51.9 3.0 21 6-26 35-55 (262)
281 3gfo_A Cobalt import ATP-bindi 97.1 0.00031 1.1E-08 52.2 3.0 21 6-26 37-57 (275)
282 3asz_A Uridine kinase; cytidin 97.1 0.00033 1.1E-08 49.6 3.1 22 4-25 7-28 (211)
283 1sgw_A Putative ABC transporte 97.1 0.00033 1.1E-08 50.1 3.0 21 6-26 38-58 (214)
284 1knq_A Gluconate kinase; ALFA/ 97.1 0.00032 1.1E-08 48.2 2.9 22 4-25 9-30 (175)
285 3t61_A Gluconokinase; PSI-biol 97.1 0.00034 1.2E-08 49.3 3.0 21 5-25 20-40 (202)
286 2cbz_A Multidrug resistance-as 97.0 0.00037 1.3E-08 50.6 3.2 22 5-26 33-54 (237)
287 3cm0_A Adenylate kinase; ATP-b 97.0 0.00045 1.5E-08 47.8 3.5 23 3-25 4-26 (186)
288 4g1u_C Hemin import ATP-bindin 97.0 0.00034 1.2E-08 51.7 3.0 22 5-26 39-60 (266)
289 1kht_A Adenylate kinase; phosp 97.0 0.0004 1.4E-08 48.2 3.2 22 4-25 4-25 (192)
290 2rhm_A Putative kinase; P-loop 97.0 0.00048 1.6E-08 48.0 3.5 23 3-25 5-27 (193)
291 1g6h_A High-affinity branched- 97.0 0.00036 1.2E-08 51.3 3.0 22 5-26 35-56 (257)
292 1cke_A CK, MSSA, protein (cyti 97.0 0.00038 1.3E-08 49.8 3.1 22 4-25 6-27 (227)
293 1u0l_A Probable GTPase ENGC; p 97.0 0.00044 1.5E-08 52.0 3.5 23 5-27 171-193 (301)
294 3uie_A Adenylyl-sulfate kinase 97.0 0.00036 1.2E-08 49.1 2.9 22 4-25 26-47 (200)
295 1mv5_A LMRA, multidrug resista 97.0 0.00041 1.4E-08 50.6 3.3 22 5-26 30-51 (243)
296 3tlx_A Adenylate kinase 2; str 97.0 0.00049 1.7E-08 50.1 3.6 24 2-25 28-51 (243)
297 2cdn_A Adenylate kinase; phosp 97.0 0.00048 1.7E-08 48.4 3.5 23 3-25 20-42 (201)
298 2olj_A Amino acid ABC transpor 97.0 0.00038 1.3E-08 51.4 3.0 22 5-26 52-73 (263)
299 2ff7_A Alpha-hemolysin translo 97.0 0.00042 1.4E-08 50.7 3.2 22 5-26 37-58 (247)
300 1jjv_A Dephospho-COA kinase; P 97.0 0.0005 1.7E-08 48.5 3.5 22 4-25 3-24 (206)
301 2pt5_A Shikimate kinase, SK; a 97.0 0.00044 1.5E-08 47.1 3.1 22 4-25 1-22 (168)
302 2pze_A Cystic fibrosis transme 97.0 0.00044 1.5E-08 49.9 3.3 22 5-26 36-57 (229)
303 1ji0_A ABC transporter; ATP bi 97.0 0.00039 1.3E-08 50.6 3.0 22 5-26 34-55 (240)
304 2eyu_A Twitching motility prot 97.0 0.00038 1.3E-08 51.3 2.9 21 5-25 27-47 (261)
305 1tev_A UMP-CMP kinase; ploop, 97.0 0.00054 1.9E-08 47.7 3.6 23 3-25 3-25 (196)
306 1vpl_A ABC transporter, ATP-bi 97.0 0.00041 1.4E-08 51.0 3.0 22 5-26 43-64 (256)
307 2qi9_C Vitamin B12 import ATP- 97.0 0.00042 1.5E-08 50.7 3.0 22 5-26 28-49 (249)
308 3ec2_A DNA replication protein 97.0 0.00032 1.1E-08 48.5 2.3 21 5-25 40-60 (180)
309 2d2e_A SUFC protein; ABC-ATPas 97.0 0.00044 1.5E-08 50.7 3.1 22 5-26 31-52 (250)
310 2v9p_A Replication protein E1; 97.0 0.00043 1.5E-08 52.2 3.1 21 5-25 128-148 (305)
311 3trf_A Shikimate kinase, SK; a 97.0 0.00051 1.7E-08 47.6 3.3 22 4-25 6-27 (185)
312 2xb4_A Adenylate kinase; ATP-b 97.0 0.00049 1.7E-08 49.4 3.2 22 4-25 1-22 (223)
313 1aky_A Adenylate kinase; ATP:A 97.0 0.00049 1.7E-08 49.2 3.2 23 3-25 4-26 (220)
314 2zu0_C Probable ATP-dependent 97.0 0.00047 1.6E-08 51.0 3.1 22 5-26 48-69 (267)
315 2ghi_A Transport protein; mult 97.0 0.00049 1.7E-08 50.7 3.2 22 5-26 48-69 (260)
316 2ehv_A Hypothetical protein PH 96.9 0.00047 1.6E-08 50.0 3.1 19 6-24 33-51 (251)
317 3aez_A Pantothenate kinase; tr 96.9 0.00043 1.5E-08 52.4 2.9 22 4-25 91-112 (312)
318 3b85_A Phosphate starvation-in 96.9 0.00039 1.3E-08 49.5 2.5 22 5-26 24-45 (208)
319 1zd8_A GTP:AMP phosphotransfer 96.9 0.00053 1.8E-08 49.3 3.2 23 3-25 7-29 (227)
320 2ihy_A ABC transporter, ATP-bi 96.9 0.00052 1.8E-08 51.1 3.3 22 5-26 49-70 (279)
321 3lnc_A Guanylate kinase, GMP k 96.9 0.00028 9.6E-09 50.9 1.8 22 5-26 29-51 (231)
322 2plr_A DTMP kinase, probable t 96.9 0.00063 2.2E-08 48.0 3.5 22 4-25 5-26 (213)
323 2ixe_A Antigen peptide transpo 96.9 0.00054 1.8E-08 50.8 3.2 22 5-26 47-68 (271)
324 2nq2_C Hypothetical ABC transp 96.9 0.00051 1.7E-08 50.4 3.0 22 5-26 33-54 (253)
325 4a74_A DNA repair and recombin 96.9 0.00049 1.7E-08 49.3 2.8 22 5-26 27-48 (231)
326 2f1r_A Molybdopterin-guanine d 96.9 0.00028 9.5E-09 48.6 1.5 21 5-25 4-24 (171)
327 2yz2_A Putative ABC transporte 96.9 0.00053 1.8E-08 50.7 3.0 22 5-26 35-56 (266)
328 1via_A Shikimate kinase; struc 96.9 0.00055 1.9E-08 47.0 2.9 21 5-25 6-26 (175)
329 1gvn_B Zeta; postsegregational 96.9 0.00066 2.2E-08 50.8 3.4 23 3-25 33-55 (287)
330 1zak_A Adenylate kinase; ATP:A 96.9 0.00053 1.8E-08 49.1 2.8 23 3-25 5-27 (222)
331 3be4_A Adenylate kinase; malar 96.9 0.00067 2.3E-08 48.4 3.2 23 3-25 5-27 (217)
332 2pjz_A Hypothetical protein ST 96.9 0.00067 2.3E-08 50.0 3.3 22 5-26 32-53 (263)
333 1lw7_A Transcriptional regulat 96.9 0.00053 1.8E-08 53.0 2.8 23 4-26 171-193 (365)
334 1y63_A LMAJ004144AAA protein; 96.8 0.00076 2.6E-08 46.8 3.3 23 4-26 11-33 (184)
335 2x8a_A Nuclear valosin-contain 96.8 0.00063 2.2E-08 50.5 2.9 21 6-26 47-67 (274)
336 2qt1_A Nicotinamide riboside k 96.8 0.00096 3.3E-08 47.1 3.7 24 3-26 21-44 (207)
337 3iij_A Coilin-interacting nucl 96.8 0.00074 2.5E-08 46.6 3.0 21 5-25 13-33 (180)
338 1xjc_A MOBB protein homolog; s 96.8 0.00078 2.7E-08 46.2 3.1 22 4-25 5-26 (169)
339 2ze6_A Isopentenyl transferase 96.8 0.00072 2.5E-08 49.6 3.1 21 5-25 3-23 (253)
340 3tqc_A Pantothenate kinase; bi 96.8 0.0009 3.1E-08 50.8 3.6 23 3-25 92-114 (321)
341 2v54_A DTMP kinase, thymidylat 96.8 0.00082 2.8E-08 47.2 3.2 24 3-26 4-27 (204)
342 2pbr_A DTMP kinase, thymidylat 96.8 0.00081 2.8E-08 46.8 3.2 21 5-25 2-22 (195)
343 2c95_A Adenylate kinase 1; tra 96.8 0.00084 2.9E-08 46.8 3.3 23 3-25 9-31 (196)
344 1ukz_A Uridylate kinase; trans 96.8 0.001 3.5E-08 46.7 3.7 23 3-25 15-37 (203)
345 1ak2_A Adenylate kinase isoenz 96.8 0.00092 3.2E-08 48.2 3.5 23 3-25 16-38 (233)
346 3fvq_A Fe(3+) IONS import ATP- 96.8 0.00073 2.5E-08 52.1 3.0 22 6-27 33-54 (359)
347 2bwj_A Adenylate kinase 5; pho 96.8 0.00086 2.9E-08 46.9 3.2 22 4-25 13-34 (199)
348 3nh6_A ATP-binding cassette SU 96.8 0.00056 1.9E-08 51.6 2.3 21 5-25 82-102 (306)
349 2bbs_A Cystic fibrosis transme 96.8 0.00083 2.8E-08 50.3 3.2 22 5-26 66-87 (290)
350 2z0h_A DTMP kinase, thymidylat 96.8 0.0009 3.1E-08 46.7 3.2 21 5-25 2-22 (197)
351 1gtv_A TMK, thymidylate kinase 96.8 0.00033 1.1E-08 49.6 1.0 21 5-25 2-22 (214)
352 3umf_A Adenylate kinase; rossm 96.8 0.00085 2.9E-08 48.0 3.1 20 6-25 32-51 (217)
353 1uf9_A TT1252 protein; P-loop, 96.8 0.0012 4E-08 46.3 3.7 25 2-26 7-31 (203)
354 2jeo_A Uridine-cytidine kinase 96.7 0.001 3.5E-08 48.4 3.5 22 4-25 26-47 (245)
355 2iyv_A Shikimate kinase, SK; t 96.7 0.00075 2.6E-08 46.7 2.6 22 4-25 3-24 (184)
356 1rj9_A FTSY, signal recognitio 96.7 0.00078 2.7E-08 50.8 2.9 84 53-146 186-281 (304)
357 3jvv_A Twitching mobility prot 96.7 0.00077 2.6E-08 51.9 2.9 21 5-25 125-145 (356)
358 2kjq_A DNAA-related protein; s 96.7 0.00059 2E-08 45.8 2.0 21 5-25 38-58 (149)
359 1rz3_A Hypothetical protein rb 96.7 0.0011 3.8E-08 46.7 3.5 22 4-25 23-44 (201)
360 1qf9_A UMP/CMP kinase, protein 96.7 0.0012 3.9E-08 45.9 3.5 22 4-25 7-28 (194)
361 1z47_A CYSA, putative ABC-tran 96.7 0.00087 3E-08 51.6 3.1 21 6-26 44-64 (355)
362 2wwf_A Thymidilate kinase, put 96.7 0.00096 3.3E-08 47.1 3.1 23 3-25 10-32 (212)
363 2yvu_A Probable adenylyl-sulfa 96.7 0.00097 3.3E-08 46.3 3.1 22 4-25 14-35 (186)
364 3tui_C Methionine import ATP-b 96.7 0.00091 3.1E-08 51.6 3.1 21 6-26 57-77 (366)
365 3co5_A Putative two-component 96.7 0.0018 6.1E-08 43.0 4.3 22 4-25 28-49 (143)
366 1ixz_A ATP-dependent metallopr 96.7 0.00088 3E-08 48.9 2.9 21 6-26 52-72 (254)
367 2p5t_B PEZT; postsegregational 96.7 0.00077 2.6E-08 49.3 2.6 23 3-25 32-54 (253)
368 2yyz_A Sugar ABC transporter, 96.7 0.00093 3.2E-08 51.5 3.1 21 6-26 32-52 (359)
369 1odf_A YGR205W, hypothetical 3 96.7 0.0012 4.1E-08 49.4 3.6 22 3-24 31-52 (290)
370 1nn5_A Similar to deoxythymidy 96.7 0.0011 3.7E-08 47.0 3.3 23 3-25 9-31 (215)
371 2it1_A 362AA long hypothetical 96.7 0.00096 3.3E-08 51.5 3.1 21 6-26 32-52 (362)
372 3rlf_A Maltose/maltodextrin im 96.7 0.00098 3.4E-08 51.7 3.1 21 6-26 32-52 (381)
373 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4.2E-08 48.5 3.5 23 3-25 4-26 (260)
374 3b9q_A Chloroplast SRP recepto 96.7 0.00094 3.2E-08 50.3 2.9 21 5-25 102-122 (302)
375 1vht_A Dephospho-COA kinase; s 96.7 0.0013 4.4E-08 46.9 3.5 23 3-25 4-26 (218)
376 1e6c_A Shikimate kinase; phosp 96.7 0.0011 3.6E-08 45.3 3.0 22 4-25 3-24 (173)
377 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.8E-08 45.6 3.1 21 5-25 45-65 (195)
378 1sq5_A Pantothenate kinase; P- 96.7 0.00096 3.3E-08 50.4 2.9 22 4-25 81-102 (308)
379 1v43_A Sugar-binding transport 96.6 0.0011 3.6E-08 51.4 3.1 21 6-26 40-60 (372)
380 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.00099 3.4E-08 50.8 2.9 22 5-26 173-194 (330)
381 1g29_1 MALK, maltose transport 96.6 0.001 3.6E-08 51.5 3.1 21 6-26 32-52 (372)
382 2grj_A Dephospho-COA kinase; T 96.6 0.0016 5.4E-08 45.7 3.7 24 2-25 11-34 (192)
383 2gza_A Type IV secretion syste 96.6 0.001 3.5E-08 51.4 3.0 22 5-26 177-198 (361)
384 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.4E-08 48.1 3.3 21 4-24 28-48 (252)
385 2ewv_A Twitching motility prot 96.6 0.001 3.6E-08 51.5 2.8 21 5-25 138-158 (372)
386 2vli_A Antibiotic resistance p 96.6 0.00079 2.7E-08 46.4 2.0 22 4-25 6-27 (183)
387 2vp4_A Deoxynucleoside kinase; 96.6 0.0009 3.1E-08 48.2 2.3 23 4-26 21-43 (230)
388 3r20_A Cytidylate kinase; stru 96.6 0.0014 5E-08 47.3 3.3 23 3-25 9-31 (233)
389 3d31_A Sulfate/molybdate ABC t 96.6 0.00088 3E-08 51.4 2.2 21 6-26 29-49 (348)
390 2pez_A Bifunctional 3'-phospho 96.6 0.0013 4.6E-08 45.2 2.9 22 4-25 6-27 (179)
391 1ltq_A Polynucleotide kinase; 96.6 0.0017 5.7E-08 48.6 3.6 23 3-25 2-24 (301)
392 1iy2_A ATP-dependent metallopr 96.5 0.0013 4.5E-08 48.7 2.9 22 5-26 75-96 (278)
393 1in4_A RUVB, holliday junction 96.5 0.0013 4.3E-08 50.2 2.9 21 5-25 53-73 (334)
394 1zcb_A G alpha I/13; GTP-bindi 96.5 0.0016 5.5E-08 50.3 3.5 22 2-23 32-53 (362)
395 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0014 4.9E-08 46.8 3.0 20 6-25 26-45 (235)
396 1p9r_A General secretion pathw 96.5 0.0013 4.5E-08 51.7 2.9 22 5-26 169-190 (418)
397 1zuh_A Shikimate kinase; alpha 96.5 0.0018 6.3E-08 44.0 3.3 21 5-25 9-29 (168)
398 3gmt_A Adenylate kinase; ssgci 96.5 0.0017 5.8E-08 46.8 3.2 24 2-25 7-30 (230)
399 1uj2_A Uridine-cytidine kinase 96.5 0.0019 6.5E-08 47.2 3.6 23 3-25 22-44 (252)
400 3gd7_A Fusion complex of cysti 96.5 0.0014 4.9E-08 51.0 3.0 21 5-25 49-69 (390)
401 2oap_1 GSPE-2, type II secreti 96.5 0.0015 5E-08 52.8 3.1 22 5-26 262-283 (511)
402 3kta_A Chromosome segregation 96.5 0.0017 5.9E-08 44.7 3.0 20 6-25 29-48 (182)
403 1nij_A Hypothetical protein YJ 96.5 0.0011 3.9E-08 50.2 2.3 22 5-26 6-27 (318)
404 2f6r_A COA synthase, bifunctio 96.5 0.0019 6.7E-08 48.0 3.5 22 3-24 75-96 (281)
405 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0051 1.7E-07 48.7 5.9 22 3-24 67-88 (457)
406 2og2_A Putative signal recogni 96.5 0.0016 5.4E-08 50.2 2.9 21 5-25 159-179 (359)
407 1oxx_K GLCV, glucose, ABC tran 96.4 0.00088 3E-08 51.6 1.5 21 6-26 34-54 (353)
408 1lv7_A FTSH; alpha/beta domain 96.4 0.0017 5.7E-08 47.5 2.9 21 5-25 47-67 (257)
409 1m7g_A Adenylylsulfate kinase; 96.4 0.0017 5.9E-08 46.0 2.9 22 4-25 26-47 (211)
410 4eaq_A DTMP kinase, thymidylat 96.4 0.0023 7.9E-08 46.1 3.5 22 4-25 27-48 (229)
411 3nwj_A ATSK2; P loop, shikimat 96.4 0.0016 5.5E-08 47.6 2.7 21 5-25 50-70 (250)
412 2yhs_A FTSY, cell division pro 96.4 0.0017 5.7E-08 52.1 2.9 92 52-155 376-479 (503)
413 1cr0_A DNA primase/helicase; R 96.4 0.0017 5.8E-08 48.6 2.8 20 6-25 38-57 (296)
414 2npi_A Protein CLP1; CLP1-PCF1 96.4 0.0015 5.2E-08 52.1 2.6 22 5-26 140-161 (460)
415 2p65_A Hypothetical protein PF 96.4 0.0016 5.6E-08 44.6 2.5 21 5-25 45-65 (187)
416 2cvh_A DNA repair and recombin 96.4 0.002 6.8E-08 45.7 2.9 21 5-25 22-42 (220)
417 3bos_A Putative DNA replicatio 96.4 0.0021 7.2E-08 46.0 3.0 22 4-25 53-74 (242)
418 2obl_A ESCN; ATPase, hydrolase 96.3 0.0021 7.3E-08 49.3 3.1 22 5-26 73-94 (347)
419 1n0w_A DNA repair protein RAD5 96.3 0.0021 7.3E-08 46.3 2.9 22 5-26 26-47 (243)
420 2w58_A DNAI, primosome compone 96.3 0.0023 7.8E-08 44.9 2.9 22 4-25 55-76 (202)
421 1tue_A Replication protein E1; 96.3 0.002 6.8E-08 45.6 2.3 21 5-25 60-80 (212)
422 1svm_A Large T antigen; AAA+ f 96.2 0.0024 8.2E-08 49.6 2.9 21 5-25 171-191 (377)
423 3n70_A Transport activator; si 96.2 0.0029 1E-07 42.0 2.9 23 4-26 25-47 (145)
424 1f2t_A RAD50 ABC-ATPase; DNA d 96.2 0.0032 1.1E-07 42.2 3.1 19 6-24 26-44 (149)
425 2qmh_A HPR kinase/phosphorylas 96.2 0.003 1E-07 44.5 2.9 23 4-26 35-57 (205)
426 3b9p_A CG5977-PA, isoform A; A 96.2 0.0028 9.4E-08 47.3 2.8 22 4-25 55-76 (297)
427 3h4m_A Proteasome-activating n 96.1 0.0029 9.9E-08 46.9 2.8 22 5-26 53-74 (285)
428 3t15_A Ribulose bisphosphate c 96.1 0.003 1E-07 47.3 2.9 22 4-25 37-58 (293)
429 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0031 1.1E-07 46.0 2.9 21 5-25 41-61 (262)
430 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0034 1.2E-07 51.1 3.4 22 5-26 49-70 (538)
431 1njg_A DNA polymerase III subu 96.1 0.0033 1.1E-07 44.8 3.0 21 5-25 47-67 (250)
432 2xtz_A Guanine nucleotide-bind 96.1 0.0039 1.3E-07 48.0 3.4 23 2-24 8-30 (354)
433 2chg_A Replication factor C sm 96.1 0.0035 1.2E-07 44.1 3.0 21 5-25 40-60 (226)
434 3cf0_A Transitional endoplasmi 96.1 0.0031 1.1E-07 47.3 2.8 22 5-26 51-72 (301)
435 3zvl_A Bifunctional polynucleo 96.1 0.0032 1.1E-07 49.6 3.0 22 4-25 259-280 (416)
436 2dpy_A FLII, flagellum-specifi 96.1 0.0034 1.1E-07 49.8 3.1 22 5-26 159-180 (438)
437 3euj_A Chromosome partition pr 96.1 0.0032 1.1E-07 50.4 2.9 21 5-25 31-51 (483)
438 1nlf_A Regulatory protein REPA 96.0 0.0036 1.2E-07 46.3 3.0 21 5-25 32-52 (279)
439 3b60_A Lipid A export ATP-bind 96.0 0.0038 1.3E-07 51.3 3.2 22 5-26 371-392 (582)
440 2px0_A Flagellar biosynthesis 96.0 0.0038 1.3E-07 46.8 2.8 85 52-146 183-273 (296)
441 3ake_A Cytidylate kinase; CMP 96.0 0.0051 1.7E-07 43.2 3.3 21 5-25 4-24 (208)
442 3crm_A TRNA delta(2)-isopenten 96.0 0.0056 1.9E-07 46.4 3.6 22 4-25 6-27 (323)
443 3j16_B RLI1P; ribosome recycli 95.9 0.0057 2E-07 50.5 3.9 22 5-26 105-126 (608)
444 3ozx_A RNAse L inhibitor; ATP 95.9 0.0056 1.9E-07 49.8 3.8 21 6-26 28-48 (538)
445 3b5x_A Lipid A export ATP-bind 95.9 0.0044 1.5E-07 50.9 3.2 22 5-26 371-392 (582)
446 4b4t_K 26S protease regulatory 95.9 0.0041 1.4E-07 49.0 2.9 21 5-25 208-228 (428)
447 1q3t_A Cytidylate kinase; nucl 95.9 0.0057 2E-07 44.1 3.5 23 3-25 16-38 (236)
448 1l8q_A Chromosomal replication 95.9 0.0042 1.5E-07 47.0 2.8 21 5-25 39-59 (324)
449 2dr3_A UPF0273 protein PH0284; 95.9 0.0049 1.7E-07 44.4 3.0 20 6-25 26-45 (247)
450 4b4t_M 26S protease regulatory 95.9 0.0045 1.5E-07 48.9 2.9 22 5-26 217-238 (434)
451 1vma_A Cell division protein F 95.9 0.0047 1.6E-07 46.6 2.9 86 52-147 187-284 (306)
452 3d3q_A TRNA delta(2)-isopenten 95.9 0.0049 1.7E-07 47.1 3.0 21 5-25 9-29 (340)
453 3syl_A Protein CBBX; photosynt 95.9 0.005 1.7E-07 46.1 3.1 21 5-25 69-89 (309)
454 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.005 1.7E-07 47.6 3.1 19 6-24 26-44 (365)
455 2qby_A CDC6 homolog 1, cell di 95.8 0.0047 1.6E-07 47.5 2.9 21 5-25 47-67 (386)
456 1c9k_A COBU, adenosylcobinamid 95.8 0.0063 2.1E-07 42.1 3.2 21 6-26 2-22 (180)
457 3bk7_A ABC transporter ATP-bin 95.8 0.0073 2.5E-07 49.9 4.1 22 5-26 119-140 (607)
458 2yl4_A ATP-binding cassette SU 95.8 0.0039 1.3E-07 51.4 2.5 22 5-26 372-393 (595)
459 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0048 1.7E-07 46.8 2.8 22 5-26 47-68 (322)
460 3a8t_A Adenylate isopentenyltr 95.8 0.0058 2E-07 46.6 3.2 21 5-25 42-62 (339)
461 2ocp_A DGK, deoxyguanosine kin 95.8 0.007 2.4E-07 43.7 3.6 23 3-25 2-24 (241)
462 1p5z_B DCK, deoxycytidine kina 95.8 0.0041 1.4E-07 45.7 2.3 23 3-25 24-46 (263)
463 4b4t_L 26S protease subunit RP 95.8 0.005 1.7E-07 48.7 2.9 22 5-26 217-238 (437)
464 1ofh_A ATP-dependent HSL prote 95.8 0.0056 1.9E-07 45.7 3.1 21 5-25 52-72 (310)
465 1sxj_E Activator 1 40 kDa subu 95.8 0.0041 1.4E-07 47.5 2.4 20 6-25 39-58 (354)
466 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0064 2.2E-07 46.7 3.4 22 3-24 24-45 (359)
467 1d2n_A N-ethylmaleimide-sensit 95.8 0.0056 1.9E-07 45.1 3.0 24 3-26 64-87 (272)
468 3ozx_A RNAse L inhibitor; ATP 95.8 0.0051 1.8E-07 50.0 3.0 22 5-26 296-317 (538)
469 1yqt_A RNAse L inhibitor; ATP- 95.8 0.006 2E-07 49.7 3.4 23 5-27 314-336 (538)
470 3exa_A TRNA delta(2)-isopenten 95.8 0.0059 2E-07 46.1 3.1 21 5-25 5-25 (322)
471 3qf4_B Uncharacterized ABC tra 95.8 0.0044 1.5E-07 51.1 2.6 21 5-25 383-403 (598)
472 1sxj_C Activator 1 40 kDa subu 95.8 0.0052 1.8E-07 46.8 2.8 21 6-26 49-69 (340)
473 4fcw_A Chaperone protein CLPB; 95.8 0.0055 1.9E-07 45.9 2.9 21 5-25 49-69 (311)
474 4b4t_J 26S protease regulatory 95.7 0.0056 1.9E-07 47.8 2.9 22 5-26 184-205 (405)
475 1pzn_A RAD51, DNA repair and r 95.7 0.0057 1.9E-07 47.0 2.8 22 5-26 133-154 (349)
476 3tqf_A HPR(Ser) kinase; transf 95.7 0.0069 2.4E-07 41.6 2.9 22 5-26 18-39 (181)
477 3bk7_A ABC transporter ATP-bin 95.7 0.0086 3E-07 49.4 4.0 23 5-27 384-406 (607)
478 1fnn_A CDC6P, cell division co 95.7 0.006 2E-07 47.1 2.9 22 5-26 46-67 (389)
479 4a82_A Cystic fibrosis transme 95.7 0.0038 1.3E-07 51.3 1.9 21 5-25 369-389 (578)
480 3eie_A Vacuolar protein sortin 95.7 0.006 2.1E-07 46.2 2.8 22 5-26 53-74 (322)
481 3foz_A TRNA delta(2)-isopenten 95.6 0.0072 2.5E-07 45.5 3.1 21 5-25 12-32 (316)
482 4edh_A DTMP kinase, thymidylat 95.6 0.0074 2.5E-07 43.0 3.0 22 4-25 7-28 (213)
483 3qf4_A ABC transporter, ATP-bi 95.6 0.005 1.7E-07 50.7 2.3 21 5-25 371-391 (587)
484 3j16_B RLI1P; ribosome recycli 95.6 0.007 2.4E-07 50.0 3.1 22 6-27 381-402 (608)
485 1sxj_D Activator 1 41 kDa subu 95.6 0.0071 2.4E-07 46.1 2.9 20 6-25 61-80 (353)
486 3ea0_A ATPase, para family; al 95.5 0.13 4.3E-06 36.9 9.5 87 52-146 119-205 (245)
487 3uk6_A RUVB-like 2; hexameric 95.5 0.0076 2.6E-07 46.3 3.0 21 5-25 72-92 (368)
488 2h92_A Cytidylate kinase; ross 95.5 0.0078 2.7E-07 42.7 2.8 23 3-25 3-25 (219)
489 3v9p_A DTMP kinase, thymidylat 95.5 0.006 2.1E-07 43.9 2.2 22 4-25 26-47 (227)
490 3qks_A DNA double-strand break 95.5 0.0085 2.9E-07 42.3 3.0 19 6-24 26-44 (203)
491 2r62_A Cell division protease 95.5 0.003 1E-07 46.3 0.7 21 5-25 46-66 (268)
492 2qp9_X Vacuolar protein sortin 95.5 0.0078 2.7E-07 46.3 2.9 22 5-26 86-107 (355)
493 4b4t_I 26S protease regulatory 95.5 0.0077 2.6E-07 47.4 2.9 22 5-26 218-239 (437)
494 3cr8_A Sulfate adenylyltranfer 95.5 0.0057 1.9E-07 49.9 2.1 22 4-25 370-391 (552)
495 2v1u_A Cell division control p 95.4 0.0069 2.4E-07 46.6 2.4 21 5-25 46-66 (387)
496 3lv8_A DTMP kinase, thymidylat 95.4 0.0095 3.2E-07 43.1 3.0 22 4-25 28-49 (236)
497 3m6a_A ATP-dependent protease 95.4 0.0079 2.7E-07 49.0 2.8 21 5-25 110-130 (543)
498 1a7j_A Phosphoribulokinase; tr 95.4 0.0048 1.7E-07 46.1 1.4 23 3-25 5-27 (290)
499 1tf7_A KAIC; homohexamer, hexa 95.4 0.0088 3E-07 48.5 3.0 19 6-24 42-60 (525)
500 3pfi_A Holliday junction ATP-d 95.4 0.0093 3.2E-07 45.3 2.9 22 5-26 57-78 (338)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.6e-44 Score=260.97 Aligned_cols=196 Identities=35% Similarity=0.619 Sum_probs=146.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+|+|.+|||||||+++|+.+.+...+.+|.+.++....+..++..+++.||||+|++.+..++..+++.++++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 35899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++++|..+..|+..+......+.|+++|+||+|+.+.+.+..++++++++.+++.|+++||++|.||+++|++|.
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999888888899999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCcCCCCC-CCCccccCCCCCCCCCCccC
Q 043946 162 ADIKNRMASQPAMNNA-RPPTVQIKGQPVNQKASCCS 197 (198)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~cc~ 197 (198)
+.+.+........... ..........++.++++|||
T Consensus 172 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 172 AALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp HHC----------------------------------
T ss_pred HHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence 8886544332222111 11122222333445566777
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=8e-40 Score=236.15 Aligned_cols=197 Identities=70% Similarity=1.116 Sum_probs=160.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 35799999999999999999999998888888888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 165 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776679999999999998777778888999999999999999999999999999999
Q ss_pred HHHHHHhhhcCcCCCC----CCCCccccCCCCCCCCCCccC
Q 043946 161 TADIKNRMASQPAMNN----ARPPTVQIKGQPVNQKASCCS 197 (198)
Q Consensus 161 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~cc~ 197 (198)
.+.+.+.......... +....+.+...+.+++++|||
T Consensus 166 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 206 (206)
T 2bcg_Y 166 ARQIKESMSQQNLNETTQKKEDKGNVNLKGQSLTNTGGCCC 206 (206)
T ss_dssp HHHHHHHCCHHHHHTTSGGGCCCSCCCTTCC----------
T ss_pred HHHHHHHHhhcccccccccCCCccceeccccccccCCCCCC
Confidence 9999876543321111 111333333334457778998
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=7.9e-38 Score=225.62 Aligned_cols=194 Identities=36% Similarity=0.659 Sum_probs=150.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.++|+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 57899999999999999999999988887888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAKAFAD-EIGIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~ 156 (198)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA 165 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 9999999999999999888876543 468999999999997 44566778888877 56789999999999999999
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCccccCC-C-CCCCCCCccC
Q 043946 157 FMAMTADIKNRMASQPAMNNARPPTVQIKG-Q-PVNQKASCCS 197 (198)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~cc~ 197 (198)
|++|.+.+.++........ ..+..+.+.+ . ..+++++|||
T Consensus 166 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 166 FQTIARNALKQETEVELYN-EFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HSCCCC-----------------
T ss_pred HHHHHHHHHHhcccccccc-CCCccccCCcccccccCCCCCCC
Confidence 9999999987655332211 1122222332 2 3367777888
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=214.98 Aligned_cols=171 Identities=84% Similarity=1.295 Sum_probs=156.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 94 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV 94 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence 57899999999999999999999988888888888888888999999988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++|.
T Consensus 95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999888777899999999999988888888899999999999999999999999999999999
Q ss_pred HHHHHhhhcCc
Q 043946 162 ADIKNRMASQP 172 (198)
Q Consensus 162 ~~~~~~~~~~~ 172 (198)
+.+.++.....
T Consensus 175 ~~i~~~~~~~~ 185 (196)
T 3tkl_A 175 AEIKKRMGPGA 185 (196)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHhcccc
Confidence 99988765443
No 5
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=221.97 Aligned_cols=170 Identities=50% Similarity=0.802 Sum_probs=145.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 35799999999999999999999998888778888888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 170 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887766679999999999998767778888899999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
.+.+.++...
T Consensus 171 ~~~i~~~~~~ 180 (223)
T 3cpj_B 171 INTIYQKVSK 180 (223)
T ss_dssp HHHHTTCC--
T ss_pred HHHHHHHhhh
Confidence 9998765443
No 6
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=216.66 Aligned_cols=169 Identities=38% Similarity=0.638 Sum_probs=148.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+|+|.+|||||||+++|.+..+...+.++.+... ...+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 368999999999999999999998887777777766444 4567788888899999999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988877653 478999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 043946 161 TADIKNRMASQ 171 (198)
Q Consensus 161 ~~~~~~~~~~~ 171 (198)
.+.+.++....
T Consensus 172 ~~~i~~~~~~~ 182 (206)
T 2bov_A 172 MREIRARKMED 182 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHccccc
Confidence 99998765443
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.2e-36 Score=214.06 Aligned_cols=170 Identities=60% Similarity=1.075 Sum_probs=126.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 35799999999999999999999988877777888887888788888988899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 165 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 165 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998888766679999999999998777778889999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
.+.+.++..+
T Consensus 166 ~~~i~~~~~~ 175 (183)
T 2fu5_C 166 ARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999876554
No 8
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.6e-35 Score=210.84 Aligned_cols=168 Identities=52% Similarity=0.966 Sum_probs=153.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..++..+|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 46799999999999999999999998887777888887887788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++.++++++++||++|.|++++|++|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 179 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL 179 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998888766679999999999998777777888999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 043946 161 TADIKNRM 168 (198)
Q Consensus 161 ~~~~~~~~ 168 (198)
.+.+.++.
T Consensus 180 ~~~i~~~~ 187 (189)
T 2gf9_A 180 VDVICEKM 187 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987754
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-36 Score=214.46 Aligned_cols=170 Identities=49% Similarity=0.855 Sum_probs=154.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..++..+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999998888788888888888888889998899999999999999989999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 183 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL 183 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999988776779999999999998777778888889999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
.+.+.++...
T Consensus 184 ~~~i~~~~~~ 193 (201)
T 2ew1_A 184 ACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999876543
No 10
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-35 Score=212.31 Aligned_cols=171 Identities=51% Similarity=0.957 Sum_probs=155.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+...+..+.+.+||+||.+.+...+..++..+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 46799999999999999999999998887777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL 165 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999888766679999999999998777778889999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 043946 161 TADIKNRMASQ 171 (198)
Q Consensus 161 ~~~~~~~~~~~ 171 (198)
.+.+.++..+.
T Consensus 166 ~~~i~~~~~~~ 176 (203)
T 1zbd_A 166 VDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99998776554
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.8e-35 Score=211.01 Aligned_cols=170 Identities=51% Similarity=0.873 Sum_probs=150.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 35789999999999999999999998887777788888888888889998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888766789999999999998777778888999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
.+.+.++...
T Consensus 179 ~~~i~~~~~~ 188 (191)
T 2a5j_A 179 AKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999876543
No 12
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=1.8e-35 Score=209.87 Aligned_cols=172 Identities=47% Similarity=0.807 Sum_probs=156.1
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999998888788888888888888888998889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++|
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 167 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC 167 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999988887766789999999999997767778888899999999999999999999999999999
Q ss_pred HHHHHHhhhcCc
Q 043946 161 TADIKNRMASQP 172 (198)
Q Consensus 161 ~~~~~~~~~~~~ 172 (198)
.+.+.++..+..
T Consensus 168 ~~~~~~~~~~~~ 179 (186)
T 2bme_A 168 ARKILNKIESGE 179 (186)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHhhhcC
Confidence 999987665443
No 13
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=9.6e-36 Score=214.16 Aligned_cols=169 Identities=50% Similarity=0.869 Sum_probs=145.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 46799999999999999999999998887777788877787888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~~~~~ 159 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++...++ +++++||++|.|++++|++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 186 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR 186 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999998887667799999999999987677788899999999999 9999999999999999999
Q ss_pred HHHHHHHhhh
Q 043946 160 MTADIKNRMA 169 (198)
Q Consensus 160 l~~~~~~~~~ 169 (198)
|.+.+.++..
T Consensus 187 l~~~i~~~~~ 196 (201)
T 2hup_A 187 VATELIMRHG 196 (201)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcc
Confidence 9999886543
No 14
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=207.03 Aligned_cols=170 Identities=62% Similarity=0.976 Sum_probs=153.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999998888788888888888888999998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+..... +.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 165 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998877653 68999999999998877788889999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 043946 161 TADIKNRMASQ 171 (198)
Q Consensus 161 ~~~~~~~~~~~ 171 (198)
.+.+.+...+.
T Consensus 166 ~~~~~~~~~~~ 176 (181)
T 3tw8_B 166 TELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 99998766543
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.1e-35 Score=207.94 Aligned_cols=166 Identities=38% Similarity=0.750 Sum_probs=144.8
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999998887778888888887788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999988877665678999999999998777778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 043946 161 TADIKN 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988764
No 16
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2e-35 Score=206.47 Aligned_cols=167 Identities=56% Similarity=1.003 Sum_probs=145.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
|+.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 57899999999999999999999998887778888887888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||+|+. .+....++...+++.++++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999998888776689999999999994 44567888888999999999999999999999999999
Q ss_pred HHHHHHhh
Q 043946 161 TADIKNRM 168 (198)
Q Consensus 161 ~~~~~~~~ 168 (198)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99987643
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.8e-35 Score=207.32 Aligned_cols=166 Identities=48% Similarity=0.877 Sum_probs=151.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 35799999999999999999999998887777888888888888888988899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++|++|
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998888776789999999999998777778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 043946 161 TADIKN 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
.+.+.+
T Consensus 173 ~~~i~~ 178 (179)
T 1z0f_A 173 AKKIYQ 178 (179)
T ss_dssp HHHHC-
T ss_pred HHHHhh
Confidence 987753
No 18
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=212.31 Aligned_cols=172 Identities=48% Similarity=0.813 Sum_probs=146.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 35799999999999999999999998887777888887888888888988899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 182 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC 182 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999998887766789999999999998767778888899999999999999999999999999999
Q ss_pred HHHHHHhhhcCc
Q 043946 161 TADIKNRMASQP 172 (198)
Q Consensus 161 ~~~~~~~~~~~~ 172 (198)
.+.+.++..+..
T Consensus 183 ~~~i~~~~~~~~ 194 (200)
T 2o52_A 183 ARTILNKIDSGE 194 (200)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC
Confidence 999987665543
No 19
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=5.8e-35 Score=206.26 Aligned_cols=165 Identities=44% Similarity=0.727 Sum_probs=150.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 46899999999999999999999988887777888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999998887666899999999999987777788899999999999999999999999999999998
Q ss_pred HHHHH
Q 043946 162 ADIKN 166 (198)
Q Consensus 162 ~~~~~ 166 (198)
+.+.+
T Consensus 171 ~~~~~ 175 (181)
T 2efe_B 171 RRLPR 175 (181)
T ss_dssp HTCC-
T ss_pred HHHHh
Confidence 87754
No 20
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-34 Score=204.77 Aligned_cols=167 Identities=52% Similarity=0.979 Sum_probs=142.5
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGI 79 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 79 (198)
+..+||+++|.+|||||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 35789999999999999999999987764 45667777777777778898889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 80 IIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
|+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888876668999999999999877777888889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 043946 160 MTADIKNR 167 (198)
Q Consensus 160 l~~~~~~~ 167 (198)
|.+.+.++
T Consensus 168 l~~~~~~~ 175 (180)
T 2g6b_A 168 IAKELKRR 175 (180)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988754
No 21
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.6e-36 Score=214.58 Aligned_cols=169 Identities=50% Similarity=0.960 Sum_probs=154.4
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+...+..+.+.+||+||++.+..++..++..+|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 36799999999999999999999998887788888887888888888877789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++|
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777788899999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 043946 161 TADIKNRMA 169 (198)
Q Consensus 161 ~~~~~~~~~ 169 (198)
.+.+.++..
T Consensus 181 ~~~i~~~~~ 189 (191)
T 3dz8_A 181 VDAICDKMS 189 (191)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcc
Confidence 999987644
No 22
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.2e-35 Score=208.42 Aligned_cols=169 Identities=46% Similarity=0.767 Sum_probs=153.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||.+.+...+..++..+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35799999999999999999999998887777788787888788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|++|
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 182 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV 182 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999988877666679999999999998766778888999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 043946 161 TADIKNRMA 169 (198)
Q Consensus 161 ~~~~~~~~~ 169 (198)
.+.+.++..
T Consensus 183 ~~~i~~~~~ 191 (193)
T 2oil_A 183 LKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999887654
No 23
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=5.5e-35 Score=203.83 Aligned_cols=165 Identities=35% Similarity=0.656 Sum_probs=149.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+++|++|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999998888788888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999998887665 468999999999998766777888999999999999999999999999999999
Q ss_pred HHHHHH
Q 043946 161 TADIKN 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988764
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.5e-34 Score=201.96 Aligned_cols=163 Identities=42% Similarity=0.746 Sum_probs=149.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+++|++|||||||+++|.+..+...+.++.+.+.....+...+....+.+||+||.+.+...+..++..+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 57899999999999999999999988877788888888888888889888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~ 164 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999887667899999999999987777788889999999999999999999999999999998
Q ss_pred HHH
Q 043946 162 ADI 164 (198)
Q Consensus 162 ~~~ 164 (198)
+.+
T Consensus 165 ~~i 167 (170)
T 1z0j_A 165 RRI 167 (170)
T ss_dssp HHC
T ss_pred HHH
Confidence 765
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.1e-34 Score=202.54 Aligned_cols=163 Identities=48% Similarity=0.814 Sum_probs=148.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 46899999999999999999999988877777888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~ 164 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999988887667899999999999977667778888999999999999999999999999999998
Q ss_pred HHH
Q 043946 162 ADI 164 (198)
Q Consensus 162 ~~~ 164 (198)
+.+
T Consensus 165 ~~~ 167 (170)
T 1r2q_A 165 KKL 167 (170)
T ss_dssp HTS
T ss_pred HHH
Confidence 765
No 26
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=209.69 Aligned_cols=167 Identities=49% Similarity=0.919 Sum_probs=144.6
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||.+.+...+..++..+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35789999999999999999999998887777888888888888888988899999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 159 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.. +++++++||++|.|++++|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 183 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK 183 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999888877778999999999999877777888888888874 789999999999999999999
Q ss_pred HHHHHHHh
Q 043946 160 MTADIKNR 167 (198)
Q Consensus 160 l~~~~~~~ 167 (198)
|.+.+.++
T Consensus 184 l~~~i~~~ 191 (192)
T 2il1_A 184 LVDDILKK 191 (192)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988753
No 27
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.3e-34 Score=205.20 Aligned_cols=170 Identities=41% Similarity=0.787 Sum_probs=150.7
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeE-EEEEEECCe---------EEEEEEEeCCCccccccccc
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFK-IRTVEQDGK---------TVKLQIWDTAGQERFRTITS 70 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~ 70 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.++. ...+..++. .+.+.+||+||.+.+...+.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 35799999999999999999999998887777788777766 566666655 68999999999999999999
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccC
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD 149 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 149 (198)
.++..+|++|+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||++
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 168 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAAN 168 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCC
Confidence 999999999999999999999999999988877654 5789999999999987667788889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhc
Q 043946 150 SLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~~~~~ 170 (198)
+.|++++|++|.+.+.++...
T Consensus 169 ~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 169 GTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999876554
No 28
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7e-35 Score=203.57 Aligned_cols=163 Identities=40% Similarity=0.706 Sum_probs=148.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 36899999999999999999999988877788888888888888889888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---CcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK---KVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~ 158 (198)
|+|++++.++..+..|+..+......+.|+++|+||+|+... +.+..++...++...+++++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999888876678999999999999765 56777888889999999999999999999999999
Q ss_pred HHHHHH
Q 043946 159 AMTADI 164 (198)
Q Consensus 159 ~l~~~~ 164 (198)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-35 Score=208.63 Aligned_cols=166 Identities=41% Similarity=0.729 Sum_probs=150.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||.+.+...+..++..+|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 35799999999999999999999998877777888888888788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+++++++||++|.|++++|++|
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999999999988776679999999999998766778889999999999999999999999999999999
Q ss_pred HHHHHH
Q 043946 161 TADIKN 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
.+.+.+
T Consensus 181 ~~~i~~ 186 (192)
T 2fg5_A 181 SRQIPP 186 (192)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 887643
No 30
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=3.1e-34 Score=202.70 Aligned_cols=166 Identities=31% Similarity=0.502 Sum_probs=148.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|..+.+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 468999999999999999999998888878888877666 6777888988999999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 163 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999999999988866543 478999999999998888888999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 043946 161 TADIKNRM 168 (198)
Q Consensus 161 ~~~~~~~~ 168 (198)
.+.+.+..
T Consensus 164 ~~~~~~~~ 171 (181)
T 3t5g_A 164 ILEAEKMD 171 (181)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhc
Confidence 99988644
No 31
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.7e-34 Score=202.59 Aligned_cols=164 Identities=37% Similarity=0.622 Sum_probs=148.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|....+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999888878878777666 6777888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEecc-CCCCHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAK-DSLNVEQAFMA 159 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~-~~~~i~~~~~~ 159 (198)
|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++..++++++++||+ ++.|++++|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence 99999999999999999888664 33578999999999998877888999999999999999999999 99999999999
Q ss_pred HHHHHHH
Q 043946 160 MTADIKN 166 (198)
Q Consensus 160 l~~~~~~ 166 (198)
|.+.+.+
T Consensus 176 l~~~i~~ 182 (183)
T 3kkq_A 176 LVRVIRQ 182 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998875
No 32
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=3.8e-35 Score=212.52 Aligned_cols=167 Identities=32% Similarity=0.606 Sum_probs=141.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|....+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|++|+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 468999999999999999999998888777777776444 3556678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--------CCHHHHHHHHHHhCC-cEEEEeccCCC
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKKV--------VSYETAKAFADEIGI-PFMETSAKDSL 151 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~S~~~~~ 151 (198)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+... +..+++..++..+++ +++++||++|.
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 99999999999886 79888877654 789999999999866443 367888889999996 99999999999
Q ss_pred CHHHHHHHHHHHHHHhhhc
Q 043946 152 NVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 152 ~i~~~~~~l~~~~~~~~~~ 170 (198)
|++++|++|.+.+.+....
T Consensus 166 gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp THHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHhhhhhh
Confidence 9999999999999865443
No 33
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=200.95 Aligned_cols=169 Identities=31% Similarity=0.431 Sum_probs=136.3
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccccccccCccE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--FRTITSSYYRGAHG 78 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~ 78 (198)
++.+||+|+|++|||||||+++|.+..+...+ ++.+.+.....+.+++..+.+.+||+||.+. +..+...++..+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 46799999999999999999999987765433 3455566677788888888999999999887 45667788899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043946 79 IIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887652 3478999999999998777788888888999999999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 043946 158 MAMTADIKNRMAS 170 (198)
Q Consensus 158 ~~l~~~~~~~~~~ 170 (198)
++|.+.+.++...
T Consensus 161 ~~l~~~~~~~~~~ 173 (175)
T 2nzj_A 161 EGVVRQLRLRRRD 173 (175)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcc
Confidence 9999998775543
No 34
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=7.5e-34 Score=205.63 Aligned_cols=168 Identities=55% Similarity=0.996 Sum_probs=151.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999999988877888888888888888899988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++.++..+..|+..+......+.|+++|+||+|+ ..+.+..++...++..++++++++||++|.|++++|++|.
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 177 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999888876667999999999999 4455677888889999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 043946 162 ADIKNRMAS 170 (198)
Q Consensus 162 ~~~~~~~~~ 170 (198)
+.+.++...
T Consensus 178 ~~~~~~~~~ 186 (213)
T 3cph_A 178 KLIQEKIDS 186 (213)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 998876544
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=3.6e-34 Score=201.96 Aligned_cols=167 Identities=34% Similarity=0.594 Sum_probs=148.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 4689999999999999999999998887777777766555 667788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 166 (181)
T 2fn4_A 87 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 166 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999998887443 44578999999999998777778888899999999999999999999999999999
Q ss_pred HHHHHHhhh
Q 043946 161 TADIKNRMA 169 (198)
Q Consensus 161 ~~~~~~~~~ 169 (198)
.+.+.++..
T Consensus 167 ~~~~~~~~~ 175 (181)
T 2fn4_A 167 VRAVRKYQE 175 (181)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhc
Confidence 999987554
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.6e-34 Score=200.74 Aligned_cols=165 Identities=28% Similarity=0.365 Sum_probs=133.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT-ITSSYYRGAHGIII 81 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i~ 81 (198)
.+||+++|++|||||||+++|.+........++.+.+.....+..++..+.+.+||+||.+.+.. .+..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999987666555556666677778888899889999999999988765 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999988877654 478999999999998777888999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 043946 161 TADIKNR 167 (198)
Q Consensus 161 ~~~~~~~ 167 (198)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 37
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=8.5e-35 Score=211.38 Aligned_cols=170 Identities=44% Similarity=0.817 Sum_probs=149.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCe----------EEEEEEEeCCCccccccccc
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGK----------TVKLQIWDTAGQERFRTITS 70 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~ 70 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++. .+.+.+||+||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 46799999999999999999999998887777777777777667766665 68999999999999988999
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccC
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD 149 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 149 (198)
.++..+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++||++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 182 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT 182 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence 999999999999999999999999999877755443 5789999999999987777788899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhc
Q 043946 150 SLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~~~~~ 170 (198)
+.|++++|++|.+.+.++...
T Consensus 183 g~gi~~l~~~l~~~i~~~~~~ 203 (217)
T 2f7s_A 183 GQNVEKAVETLLDLIMKRMEQ 203 (217)
T ss_dssp TBTHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999876554
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=7.9e-34 Score=199.74 Aligned_cols=164 Identities=41% Similarity=0.728 Sum_probs=143.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 46899999999999999999999988877888888888888888899988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-HhCCcEEEEeccCCCCHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTDKKVVSYETAKAFAD-EIGIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~~~ 156 (198)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence 9999999999999999988876654 578999999999997 45567888888887 55689999999999999999
Q ss_pred HHHHHHHHHH
Q 043946 157 FMAMTADIKN 166 (198)
Q Consensus 157 ~~~l~~~~~~ 166 (198)
|++|.+.+.+
T Consensus 165 ~~~l~~~~~~ 174 (177)
T 1wms_A 165 FEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 39
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=206.11 Aligned_cols=166 Identities=28% Similarity=0.357 Sum_probs=142.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT-ITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~i 80 (198)
+.+||+|+|.+|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|.+.+.. ++..++..+|++|
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 578999999999999999999975443323445555666667788899889999999999987654 6778889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH
Confidence 99999999999999999988877643 47899999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 043946 160 MTADIKNR 167 (198)
Q Consensus 160 l~~~~~~~ 167 (198)
|.+.+.++
T Consensus 182 l~~~i~~~ 189 (195)
T 3cbq_A 182 AVRQIRLR 189 (195)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988653
No 40
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.5e-34 Score=202.49 Aligned_cols=163 Identities=42% Similarity=0.741 Sum_probs=149.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 93 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVV 93 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999998888878888888888888888999889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.+
T Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 94 YDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 173 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999998888776668999999999999877777888888899999999999999999999999999987
Q ss_pred HHH
Q 043946 163 DIK 165 (198)
Q Consensus 163 ~~~ 165 (198)
.+.
T Consensus 174 ~~~ 176 (179)
T 2y8e_A 174 ALP 176 (179)
T ss_dssp TCC
T ss_pred HHh
Confidence 654
No 41
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1e-33 Score=201.08 Aligned_cols=168 Identities=36% Similarity=0.648 Sum_probs=144.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|++|||||||+++|.+..+...+.++.. +.....+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999999998887766666654 4445667788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....+++..++..++++++++||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988877543 5789999999999974 4567888899999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 043946 161 TADIKNRMASQ 171 (198)
Q Consensus 161 ~~~~~~~~~~~ 171 (198)
.+.+.+.....
T Consensus 161 ~~~~~~~~~~~ 171 (189)
T 4dsu_A 161 VREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 99998766543
No 42
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=207.98 Aligned_cols=165 Identities=41% Similarity=0.740 Sum_probs=138.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||.+.+...+..++..+|++|+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 46899999999999999999999988877777888878888888889988999999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT------DKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 155 (198)
|||++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..++...++...+++++++||++|.|+++
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e 186 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence 9999999999999999998887766679999999999996 3456678888899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 156 AFMAMTADIKN 166 (198)
Q Consensus 156 ~~~~l~~~~~~ 166 (198)
+|++|.+.+.+
T Consensus 187 l~~~l~~~i~~ 197 (199)
T 2p5s_A 187 AVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 43
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-34 Score=206.63 Aligned_cols=164 Identities=34% Similarity=0.534 Sum_probs=141.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+|+|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4689999999999999999999988877677777664443 456678888899999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ +.+..++...++..++++++++||++|.|++++|++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 9999999999988888877766543 3689999999999975 456678888889999999999999999999999999
Q ss_pred HHHHHHHh
Q 043946 160 MTADIKNR 167 (198)
Q Consensus 160 l~~~~~~~ 167 (198)
|.+.+.++
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99877654
No 44
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=5.4e-34 Score=202.95 Aligned_cols=165 Identities=44% Similarity=0.835 Sum_probs=146.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR-TITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i 80 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||.+.+. .++..++..+|++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 46899999999999999999999988887788888888888888889988999999999999887 78889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCC---CCHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDS---LNVEQA 156 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~---~~i~~~ 156 (198)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||+++ .|++++
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHH
Confidence 9999999999999999998887765 457999999999999877777888899999999999999999999 999999
Q ss_pred HHHHHHHHHH
Q 043946 157 FMAMTADIKN 166 (198)
Q Consensus 157 ~~~l~~~~~~ 166 (198)
|++|.+.+.+
T Consensus 179 ~~~l~~~i~~ 188 (189)
T 1z06_A 179 FMTLAHKLKS 188 (189)
T ss_dssp HHHHC-----
T ss_pred HHHHHHHHhh
Confidence 9999887643
No 45
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.3e-34 Score=203.93 Aligned_cols=166 Identities=33% Similarity=0.548 Sum_probs=145.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG-KTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
..+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++ ..+.+.+||+||++.+...+..++..+|++|
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 84 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVL 84 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEE
Confidence 578999999999999999999998887766677777777778888876 5789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS--ENVN-KLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
+|||++++.++..+..|+..+..... .+.| +++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 85 LVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence 99999999999999999888876532 2345 89999999998766778888999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 043946 158 MAMTADIKNR 167 (198)
Q Consensus 158 ~~l~~~~~~~ 167 (198)
++|.+.+.+.
T Consensus 165 ~~l~~~~~~~ 174 (178)
T 2hxs_A 165 QKVAAEILGI 174 (178)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 46
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2e-33 Score=200.84 Aligned_cols=165 Identities=26% Similarity=0.556 Sum_probs=145.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 100 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLL 100 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEE
Confidence 4689999999999999999999998887777788776555 466788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CcCCHHHHHHHHHHhCCc-EEEEeccCCCCHHHHH
Q 043946 82 VYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK--KVVSYETAKAFADEIGIP-FMETSAKDSLNVEQAF 157 (198)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~S~~~~~~i~~~~ 157 (198)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++..+++. ++++||++|.|++++|
T Consensus 101 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 101 CFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence 9999999999987 67888887654 46899999999999753 567789999999999997 9999999999999999
Q ss_pred HHHHHHHHHhh
Q 043946 158 MAMTADIKNRM 168 (198)
Q Consensus 158 ~~l~~~~~~~~ 168 (198)
++|.+.+.++.
T Consensus 180 ~~l~~~i~~~~ 190 (194)
T 3reg_A 180 EKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHHHhcC
Confidence 99999987643
No 47
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=202.78 Aligned_cols=163 Identities=26% Similarity=0.448 Sum_probs=141.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||++|++.+..+ ..++..+|++|+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 568999999999999999999999888777778777555 355677888899999999999887764 678999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEec-cCCCCHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSA-KDSLNVEQAF 157 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~-~~~~~i~~~~ 157 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++..++++++++|| ++|.|++++|
T Consensus 98 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf 177 (187)
T 3c5c_A 98 VYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVF 177 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHH
Confidence 9999999999999999988877642 47899999999999877778889999999999999999999 8999999999
Q ss_pred HHHHHHHHH
Q 043946 158 MAMTADIKN 166 (198)
Q Consensus 158 ~~l~~~~~~ 166 (198)
++|.+.+.+
T Consensus 178 ~~l~~~i~~ 186 (187)
T 3c5c_A 178 HEAVREARR 186 (187)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999988753
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.2e-33 Score=201.58 Aligned_cols=164 Identities=33% Similarity=0.623 Sum_probs=145.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeE------------------------------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT------------------------------ 51 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 51 (198)
+.+||+|+|++|||||||+++|++..+...+.++.+.++....+..++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 57999999999999999999999988887888888777777777777655
Q ss_pred -------EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 52 -------VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 52 -------~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
..+.+||+||++.+...+..++..+|++|+|+|++++.++..+..|+..+..... .|+++|+||+| ...+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~ 162 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKF 162 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-C
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccc
Confidence 8899999999999999999999999999999999999999999999988877643 89999999999 4555
Q ss_pred cCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 043946 125 VVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
.+..+++.+++...+++++++||++|.|++++|++|.+.+.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 163 QVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 67788999999999999999999999999999999999887654
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.8e-33 Score=195.91 Aligned_cols=163 Identities=31% Similarity=0.427 Sum_probs=123.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|++|||||||+++|.+.... ...++.+.+. ...+..++..+.+.+||++|.+.+...+..++..+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999876543 2233334333 46677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999988887653 35789999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHh
Q 043946 162 ADIKNR 167 (198)
Q Consensus 162 ~~~~~~ 167 (198)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 50
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=200.31 Aligned_cols=165 Identities=48% Similarity=0.831 Sum_probs=148.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+|+|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++..+|++|+|
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 94 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILV 94 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 58999999999999999999999888878888888888888888899889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
+|++++.++..+..|+..+..... .+.|+++|+||+|+. .+.+..++...++...+++++++||+++.|++++|++|.
T Consensus 95 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 95 YDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 173 (195)
T ss_dssp EETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999888876542 468999999999995 345677888899999999999999999999999999999
Q ss_pred HHHHHhh
Q 043946 162 ADIKNRM 168 (198)
Q Consensus 162 ~~~~~~~ 168 (198)
+.+.+..
T Consensus 174 ~~~~~~~ 180 (195)
T 1x3s_A 174 EKIIQTP 180 (195)
T ss_dssp HHHHTSG
T ss_pred HHHHhhh
Confidence 9987643
No 51
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=204.73 Aligned_cols=166 Identities=27% Similarity=0.462 Sum_probs=142.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||.+.+...+..++..+|++|+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999888877777776555 5566666677899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++|
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 181 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999988866533 468999999999998877888899999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 043946 161 TADIKNRM 168 (198)
Q Consensus 161 ~~~~~~~~ 168 (198)
.+.+.+..
T Consensus 182 ~~~i~~~~ 189 (201)
T 3oes_A 182 IQEIARVE 189 (201)
T ss_dssp HHHHHHC-
T ss_pred HHHHHhhh
Confidence 99998643
No 52
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.2e-33 Score=199.49 Aligned_cols=167 Identities=41% Similarity=0.718 Sum_probs=133.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.++ +....+.+||+||++.+...+..++..+|++|
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 57899999999999999999999988877888888777777777776 55578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCC-CCcCCHHHHHHHHH-HhCCcEEEEeccCCCCHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS----ENVNKLLVGNKCDLTD-KKVVSYETAKAFAD-EIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~S~~~~~~i~ 154 (198)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.. .+.+..+++..++. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence 99999999999999999988876653 5789999999999954 34466788888887 456899999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 043946 155 QAFMAMTADIKNRM 168 (198)
Q Consensus 155 ~~~~~l~~~~~~~~ 168 (198)
++|++|.+.+.++.
T Consensus 167 ~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 167 TAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
No 53
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.3e-34 Score=208.39 Aligned_cols=171 Identities=28% Similarity=0.491 Sum_probs=147.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+... +..+.+.+||+||.+.+...+..++..+|++|
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 57999999999999999999999888777777777766665555544 34488999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 169 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL 169 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999999999999988877779999999999998776778888888888889999999999999999999999
Q ss_pred HHHHHHhhhcCc
Q 043946 161 TADIKNRMASQP 172 (198)
Q Consensus 161 ~~~~~~~~~~~~ 172 (198)
.+.+.+......
T Consensus 170 ~~~~~~~~~~~~ 181 (218)
T 4djt_A 170 ARIFTGRPDLIF 181 (218)
T ss_dssp HHHHHCCTTCCB
T ss_pred HHHHhccccccc
Confidence 999987665543
No 54
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.4e-33 Score=196.56 Aligned_cols=163 Identities=40% Similarity=0.663 Sum_probs=141.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998887766667665444 35567888888999999999999988999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 999999999999999988877654 4789999999999987777788899999999999999999999999999999999
Q ss_pred HHHHH
Q 043946 162 ADIKN 166 (198)
Q Consensus 162 ~~~~~ 166 (198)
+.+.+
T Consensus 163 ~~i~~ 167 (168)
T 1u8z_A 163 REIRA 167 (168)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88764
No 55
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4e-33 Score=197.82 Aligned_cols=160 Identities=21% Similarity=0.363 Sum_probs=139.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|....+...+.++. . .....+.+++..+.+.+||++|++.+. ++..+|++++
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-G-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-E-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-c-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 46899999999999999999999988877776663 2 334778889988999999999988765 7788999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCCcCCHHHHHHHHHHhC-CcEEEEeccCCCCHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLT--DKKVVSYETAKAFADEIG-IPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~~~ 157 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..++..++ +.++++||++|.|++++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999998877643 468999999999994 456678889999999997 899999999999999999
Q ss_pred HHHHHHHHHhh
Q 043946 158 MAMTADIKNRM 168 (198)
Q Consensus 158 ~~l~~~~~~~~ 168 (198)
++|.+.+.+++
T Consensus 172 ~~l~~~i~~~~ 182 (184)
T 3ihw_A 172 QDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 56
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.7e-33 Score=198.45 Aligned_cols=168 Identities=39% Similarity=0.640 Sum_probs=147.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 358999999999999999999998887777777665444 4556788888899999999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++|++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999888877654 478999999999998777778889999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 043946 161 TADIKNRMAS 170 (198)
Q Consensus 161 ~~~~~~~~~~ 170 (198)
.+.+.+++.+
T Consensus 176 ~~~i~~~~~~ 185 (187)
T 2a9k_A 176 MREIRARKME 185 (187)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHhhcc
Confidence 9999876544
No 57
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.4e-33 Score=204.76 Aligned_cols=166 Identities=28% Similarity=0.535 Sum_probs=144.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.++ ...+.+++..+.+.+||++|++.+..++..++..+|++|+
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 468999999999999999999999888888888877665 3556677778999999999999999999999999999999
Q ss_pred EEECCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNN-VKQWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++..+++ +++++||
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 183 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence 999999999998 688999888775 47999999999999753 56788999999999999 9999999
Q ss_pred cCCCC-HHHHHHHHHHHHHHhhh
Q 043946 148 KDSLN-VEQAFMAMTADIKNRMA 169 (198)
Q Consensus 148 ~~~~~-i~~~~~~l~~~~~~~~~ 169 (198)
++|.| ++++|++|.+.+.++..
T Consensus 184 ~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 184 FTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TTCHHHHHHHHHHHHHHHHC---
T ss_pred CCCcccHHHHHHHHHHHHhccCc
Confidence 99998 99999999999876443
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.6e-33 Score=196.20 Aligned_cols=163 Identities=36% Similarity=0.652 Sum_probs=142.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+.... ..+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3589999999999999999999998887777777765443 556677778999999999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-CCcEEEEeccCCCCHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~~~~~ 159 (198)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..+ +++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988876653 357899999999999877777888888998887 789999999999999999999
Q ss_pred HHHHHH
Q 043946 160 MTADIK 165 (198)
Q Consensus 160 l~~~~~ 165 (198)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988763
No 59
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2.3e-33 Score=195.17 Aligned_cols=163 Identities=36% Similarity=0.607 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|++|||||||+++|.++.+...+.++.+.. ....+..++....+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999888777666666533 356777888888999999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
+|++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence 999999999999999888766543 5799999999999987777788888899999999999999999999999999999
Q ss_pred HHHHH
Q 043946 162 ADIKN 166 (198)
Q Consensus 162 ~~~~~ 166 (198)
+.+.+
T Consensus 162 ~~~~~ 166 (167)
T 1kao_A 162 RQMNY 166 (167)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 88753
No 60
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.2e-34 Score=206.05 Aligned_cols=168 Identities=27% Similarity=0.497 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccceeeeEEEEEEECCe--EEEEEEEeCCCcccccccccccccCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--SYLDSYISTIGVDFKIRTVEQDGK--TVKLQIWDTAGQERFRTITSSYYRGAH 77 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~d 77 (198)
..++|+|+|.+|||||||+++|.+. .+...+.++.+.+.....+.+++. .+.+.+||+||++.+...+..++..+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4589999999999999999999987 777677777776777778888876 789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCC-CCcCCHHHHHHHHHHhCCcEEEEeccC-CCC
Q 043946 78 GIIIVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTD-KKVVSYETAKAFADEIGIPFMETSAKD-SLN 152 (198)
Q Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~-~~~ 152 (198)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++..++++++++||++ |.|
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g 178 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD 178 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC
Confidence 99999999999999999999999988765 5799999999999987 667788899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 043946 153 VEQAFMAMTADIKNRMA 169 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~~ 169 (198)
++++|++|.+.+.++..
T Consensus 179 i~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 179 ADAPFLSIATTFYRNYE 195 (208)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876544
No 61
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.2e-33 Score=200.24 Aligned_cols=166 Identities=28% Similarity=0.397 Sum_probs=137.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS--YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-FRTITSSYYRGAHG 78 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~ 78 (198)
+.+||+|+|.+|||||||+++|.+.. +... .++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+|+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 46899999999999999999998633 2333 33455566667788899889999999999776 44566778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043946 79 IIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
+|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999988776542 3478999999999998766777888888888899999999999999999999
Q ss_pred HHHHHHHHHhh
Q 043946 158 MAMTADIKNRM 168 (198)
Q Consensus 158 ~~l~~~~~~~~ 168 (198)
++|.+.+..+.
T Consensus 195 ~~l~~~i~~~~ 205 (211)
T 2g3y_A 195 EGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhc
Confidence 99999886543
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=7.1e-33 Score=195.19 Aligned_cols=162 Identities=24% Similarity=0.363 Sum_probs=136.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+.. +.++.+.. ....+.+++..+.+.+||++|++. ..+++.+|++|+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 36899999999999999999999888765 56666533 356777888889999999999875 457788999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCC--CCCcCCHHHHHHHHHHh-CCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLT--DKKVVSYETAKAFADEI-GIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~S~~~~~~i~~ 155 (198)
|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 9999999999999998766655533 578999999999994 45567788888888876 68999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 043946 156 AFMAMTADIKNRMAS 170 (198)
Q Consensus 156 ~~~~l~~~~~~~~~~ 170 (198)
+|++|.+.+.+....
T Consensus 159 lf~~l~~~~~~~~~~ 173 (178)
T 2iwr_A 159 VFQEVAQKVVTLRKQ 173 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876543
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=198.32 Aligned_cols=166 Identities=32% Similarity=0.507 Sum_probs=137.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||.+.+..++..++.++|++|+
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 478999999999999999999998877767777765444 4567778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++||
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 99999999999987 69888877654 7999999999999752 45677888899999887 8999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhh
Q 043946 148 KDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
++|.|++++|++|.+.+.+...
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999876543
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=196.57 Aligned_cols=162 Identities=33% Similarity=0.601 Sum_probs=142.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 468999999999999999999999888777777776554 4566777778899999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++..+++ +++++||
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 174 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence 99999999999887 78888877644 7899999999999753 35678888999999998 9999999
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~ 165 (198)
++|.|++++|++|.+.+.
T Consensus 175 ~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 175 LTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998875
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=4.6e-33 Score=197.39 Aligned_cols=163 Identities=31% Similarity=0.590 Sum_probs=141.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|++|||||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 5799999999999999999999998887777777765553 456777888999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhC-CcEEEEec
Q 043946 82 VYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIG-IPFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~ 147 (198)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++.++++.++ ++++++||
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 9999999999988 67888887764 46899999999999742 4567888899998888 69999999
Q ss_pred c-CCCCHHHHHHHHHHHHHH
Q 043946 148 K-DSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 148 ~-~~~~i~~~~~~l~~~~~~ 166 (198)
+ ++.|++++|++|.+.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 8 689999999999988764
No 66
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.1e-33 Score=198.62 Aligned_cols=165 Identities=33% Similarity=0.521 Sum_probs=145.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||.+. ...+..++..+|++++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 468999999999999999999999888777777766544 45567788889999999999887 6778889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCC-CHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSL-NVEQAFMA 159 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~-~i~~~~~~ 159 (198)
|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|. |++++|++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~ 184 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE 184 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence 9999999999999999988877543 578999999999998777788889999999999999999999999 99999999
Q ss_pred HHHHHHHhh
Q 043946 160 MTADIKNRM 168 (198)
Q Consensus 160 l~~~~~~~~ 168 (198)
|.+.+.++.
T Consensus 185 l~~~i~~~~ 193 (196)
T 2atv_A 185 LCREVRRRR 193 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999987654
No 67
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=213.94 Aligned_cols=166 Identities=86% Similarity=1.325 Sum_probs=140.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.+||+|+|.+|||||||+++|.+..+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 35799999999999999999999998888777888888888889999998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l 190 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM 190 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999877766689999999999998776666677788888999999999999999999999999
Q ss_pred HHHHHH
Q 043946 161 TADIKN 166 (198)
Q Consensus 161 ~~~~~~ 166 (198)
.+.+.+
T Consensus 191 ~~~l~~ 196 (199)
T 3l0i_B 191 AAEIKK 196 (199)
T ss_dssp TTTTTT
T ss_pred HHHHHH
Confidence 877654
No 68
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=6.1e-32 Score=192.34 Aligned_cols=165 Identities=36% Similarity=0.642 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||.+.+...+..++..+|++++|
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 5899999999999999999999887776666665433 345677888888999999999999989999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
||++++.++..+..|+..+..... .+.|+++|+||+|+.. +....+++.++++.++++++++||++|.|++++|++|.
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 100 FAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999988876654 4689999999999976 45678888999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 043946 162 ADIKNRMA 169 (198)
Q Consensus 162 ~~~~~~~~ 169 (198)
+.+.+.+.
T Consensus 179 ~~~~~~~~ 186 (190)
T 3con_A 179 REIRQYRM 186 (190)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99876543
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=9.5e-33 Score=199.10 Aligned_cols=163 Identities=31% Similarity=0.589 Sum_probs=141.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+|+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|++|+
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 568999999999999999999999888777777776555 3556677778999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhC-CcEEEEec
Q 043946 82 VYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIG-IPFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S~ 147 (198)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..+++.++ +.++++||
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 9999999999988 68988887764 46899999999999742 4567888889998887 69999999
Q ss_pred c-CCCCHHHHHHHHHHHHHH
Q 043946 148 K-DSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 148 ~-~~~~i~~~~~~l~~~~~~ 166 (198)
+ ++.|++++|++|.+.+.+
T Consensus 185 k~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhh
Confidence 9 689999999999998764
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=3.6e-32 Score=195.44 Aligned_cols=163 Identities=32% Similarity=0.600 Sum_probs=142.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 4689999999999999999999998887777777766554 446778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++...++...+. +++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 9999999999988 67888777654 37899999999999764 45677888889999888 8999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~ 166 (198)
++|.|++++|++|.+.+.+
T Consensus 182 ~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987753
No 71
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.5e-32 Score=194.61 Aligned_cols=163 Identities=31% Similarity=0.577 Sum_probs=141.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 368999999999999999999998888777777765444 4566788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++...++ +++++||
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 99999999999887 68888877654 7899999999998653 45677888889999987 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~ 166 (198)
++|.|++++|++|.+.+.+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHhc
Confidence 9999999999999988864
No 72
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-33 Score=194.09 Aligned_cols=163 Identities=33% Similarity=0.517 Sum_probs=140.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+..+. ..+..++..+.+.+||+||.+.+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999988877666676654443 455677777899999999999988888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMA 159 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~ 159 (198)
|+|++++.++..+..|+..+..... .+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999988888887776543 46899999999999877777788888899999999999999999999999999
Q ss_pred HHHHHH
Q 043946 160 MTADIK 165 (198)
Q Consensus 160 l~~~~~ 165 (198)
|.+.+.
T Consensus 161 l~~~~~ 166 (172)
T 2erx_A 161 LLNLEK 166 (172)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987654
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=8.4e-32 Score=186.98 Aligned_cols=162 Identities=35% Similarity=0.626 Sum_probs=141.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|.+|||||||+++|.+..+...+.++.+.. ....+..++..+.+.+||+||.+.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 4799999999999999999999887776666665533 346667788888999999999998888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 83 YDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
+|++++.++..+..|+..+..... .+.|+++|+||+|+.. +....++..++++.++++++++|+++|.|++++|++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988877654 3689999999999976 45667888899999999999999999999999999999
Q ss_pred HHHHH
Q 043946 162 ADIKN 166 (198)
Q Consensus 162 ~~~~~ 166 (198)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88754
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=198.02 Aligned_cols=164 Identities=32% Similarity=0.623 Sum_probs=123.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++..... ...+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 358999999999999999999998887766667665333 4566788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------cCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.... .+..++...+++.+++ +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999886 6888887664 468999999999997642 5677888889999997 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 043946 148 KDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~~ 167 (198)
++|.|++++|++|.+.+.+.
T Consensus 191 ~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 75
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-32 Score=195.25 Aligned_cols=164 Identities=32% Similarity=0.597 Sum_probs=136.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.... ..+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 3589999999999999999999998887777677665554 346778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNV-KQWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..++...++...++ +++++||
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 9999999999988 67888887654 46899999999999754 34677788888888888 8999999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 043946 148 KDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~~ 167 (198)
++|.|++++|++|.+.+.++
T Consensus 182 ~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=1.2e-31 Score=191.44 Aligned_cols=166 Identities=29% Similarity=0.408 Sum_probs=135.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-FRTITSSYYRGAHG 78 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~ 78 (198)
+.+||+++|.+|||||||+++|.+. .+... .++.+.+.....+.+++..+.+.+||++|.+. ...++..+++.+|+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 5789999999999999999999853 33333 33455566667788899888999999999766 44566778888999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHH
Q 043946 79 IIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~ 157 (198)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence 999999999999999999988777653 3478999999999997666677788888888889999999999999999999
Q ss_pred HHHHHHHHHhh
Q 043946 158 MAMTADIKNRM 168 (198)
Q Consensus 158 ~~l~~~~~~~~ 168 (198)
++|.+.+..+.
T Consensus 164 ~~l~~~~~~~~ 174 (192)
T 2cjw_A 164 EGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999886543
No 77
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=100.00 E-value=5.6e-31 Score=188.92 Aligned_cols=171 Identities=50% Similarity=0.834 Sum_probs=149.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.++|+++|++|||||||+++|.+..+...+.++.+.+.....+.+++..+.+.+||++|.+.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 46899999999999999999999998887777788777777788889998899999999999998888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|+.+..++..+..|+..+......+.|+++++||+|+.+.+.+..+++..++...++.++++|++++.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l 162 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 162 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999888888887766555578999999999998766777888888999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 043946 161 TADIKNRMASQ 171 (198)
Q Consensus 161 ~~~~~~~~~~~ 171 (198)
.+.+.+.....
T Consensus 163 ~~~~~~~~~~~ 173 (199)
T 2f9l_A 163 LTEIYRIVSQK 173 (199)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHhhc
Confidence 99998765443
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=9.6e-33 Score=197.30 Aligned_cols=165 Identities=24% Similarity=0.334 Sum_probs=132.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-----------cccceeeeEEEEE-EECCeEEEEEEEeCCCcccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSY-----------ISTIGVDFKIRTV-EQDGKTVKLQIWDTAGQERFRTIT 69 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~ 69 (198)
+.+||+|+|.+|||||||++.+.+. +...+ .++.+.++....+ ..++..+.+.+||+||++.+...+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 5789999999999999999766543 33332 2333333333333 456677899999999999999999
Q ss_pred cccccCccEEEEEEECC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cE
Q 043946 70 SSYYRGAHGIIIVYDVT------DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PF 142 (198)
Q Consensus 70 ~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~ 142 (198)
..+++.+|++|+|||++ +..++..+..|+..+.. ...+.|+++|+||+|+.+. +..+++.+++...++ ++
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~ 168 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKFPV 168 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCCSCE
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCCceE
Confidence 99999999999999999 45667777777766632 3357999999999999654 678899999999999 99
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHHhhhc
Q 043946 143 METSAKDSLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 143 ~~~S~~~~~~i~~~~~~l~~~~~~~~~~ 170 (198)
+++||++|.|++++|++|.+.+.++..+
T Consensus 169 ~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 169 LEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999886654
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=1.4e-32 Score=200.25 Aligned_cols=165 Identities=31% Similarity=0.607 Sum_probs=145.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 93 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence 56899999999999999999987766666777888888888888889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
|||++++.++..+..|+..+..... +.|+++|+||+|+.+... ..+...++...+++++++||++|.|++++|++|.
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999999887753 689999999999975442 2355567788899999999999999999999999
Q ss_pred HHHHHhhh
Q 043946 162 ADIKNRMA 169 (198)
Q Consensus 162 ~~~~~~~~ 169 (198)
+.+.....
T Consensus 171 ~~l~~~~~ 178 (221)
T 3gj0_A 171 RKLIGDPN 178 (221)
T ss_dssp HHHHTCTT
T ss_pred HHHHhCcc
Confidence 99876544
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=9.3e-33 Score=195.08 Aligned_cols=162 Identities=33% Similarity=0.630 Sum_probs=125.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|....+...+.++.+..+. ..+..++..+.+.+||+||++.+...+..++..+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4689999999999999999999988777666666553332 234455666788999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCc----------CCHHHHHHHHHHhCC-cEEEEeccC
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKKV----------VSYETAKAFADEIGI-PFMETSAKD 149 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~ 149 (198)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.+. +..++..+++..+++ +++++||++
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 99999999999987 68888877654 789999999999865543 367788889988896 999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTADIK 165 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~ 165 (198)
|.|++++|++|.+.+.
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 81
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=8.6e-32 Score=193.91 Aligned_cols=161 Identities=32% Similarity=0.583 Sum_probs=137.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|....+...+.++.+ +.....+..++..+.+.+||+||.+.+...+..++..+|++|+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 368999999999999999999998888777777665 3444666778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------cCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. .+..++...+++..++ +++++||
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 99999999999987 7888887765 578999999999987543 2677888889999886 5999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADI 164 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~ 164 (198)
++|.|++++|++|.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=1.1e-31 Score=192.26 Aligned_cols=161 Identities=17% Similarity=0.308 Sum_probs=128.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
+.+||+|+|.+|||||||+++|.+..+.. .+.++.+ .....+...+ +.+.+||+||++.+..++..++..+|++|
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG--YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS--EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc--eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 57899999999999999999999988876 6667666 3334444444 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCcCCHHHHHHHH------HHhCCcEEEEe
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS--------ENVNKLLVGNKCDLTDKKVVSYETAKAFA------DEIGIPFMETS 146 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~S 146 (198)
+|||+++++++..+..|+..+..... .+.|+++|+||+|+.+.. ..+++.... +..+++++++|
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 169 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHPFVIFASN 169 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSCEEEEECB
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCeeEEEEee
Confidence 99999999999999888877754311 268999999999997653 223322211 33567899999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhh
Q 043946 147 AKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
|++|.|++++|++|.+.+.++.
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999988754
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=185.46 Aligned_cols=159 Identities=20% Similarity=0.341 Sum_probs=128.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS-YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
..+||+|+|.+|||||||+++|.+.. +...+.++.+ .....+.+++ ..+.+||+||++.+...+..++..+|++|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999876 4555556554 4445566665 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCC
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLN 152 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~ 152 (198)
+|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 173 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEG 173 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcC
Confidence 99999999999999888887766533 47899999999999653 34566655543 1346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 043946 153 VEQAFMAMTADIKN 166 (198)
Q Consensus 153 i~~~~~~l~~~~~~ 166 (198)
++++|++|.+.+.+
T Consensus 174 i~~l~~~l~~~i~~ 187 (190)
T 2h57_A 174 LQEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=2.2e-30 Score=183.67 Aligned_cols=159 Identities=26% Similarity=0.430 Sum_probs=128.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|++|||||||+++|.+.. ...+.++.+ .....+..++ ..+.+||+||++.+...+..++..+|++++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999877 556666665 3344555665 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+... ..+++++++||++|.|+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP 169 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHH
Confidence 99999999999988888776543 22578999999999997643 3344433322 2345799999999999999
Q ss_pred HHHHHHHHHHHh
Q 043946 156 AFMAMTADIKNR 167 (198)
Q Consensus 156 ~~~~l~~~~~~~ 167 (198)
+|++|.+.+.++
T Consensus 170 l~~~l~~~i~~~ 181 (186)
T 1ksh_A 170 GIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=9.6e-31 Score=182.87 Aligned_cols=158 Identities=23% Similarity=0.369 Sum_probs=125.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+++|++|||||||+++|.+..+. .+.++.+ .....+.+++ ..+.+||+||.+.+...+..++..+|++++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 4689999999999999999999987764 3445544 3345555665 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFA-----DEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.... ...+++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 999999999988888877665432 2578999999999997543 233333222 22345799999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 156 AFMAMTADIKN 166 (198)
Q Consensus 156 ~~~~l~~~~~~ 166 (198)
+|++|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (171)
T 1upt_A 159 AMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 86
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.1e-29 Score=181.19 Aligned_cols=164 Identities=52% Similarity=0.874 Sum_probs=146.2
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGII 80 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 80 (198)
++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 35789999999999999999999998887788888888888888889998888999999999988888888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHH
Q 043946 81 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAM 160 (198)
Q Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l 160 (198)
+|+|..+..++..+..|+..+......+.|+++++||+|+.+......+++..++...++.++++|++++.+++++|++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999998888888887766555578999999999998766677888889999999999999999999999999999
Q ss_pred HHHH
Q 043946 161 TADI 164 (198)
Q Consensus 161 ~~~~ 164 (198)
.+.+
T Consensus 187 ~~~i 190 (191)
T 1oix_A 187 LTEI 190 (191)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 87
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=1.4e-31 Score=185.94 Aligned_cols=156 Identities=22% Similarity=0.404 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 83 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~ 83 (198)
+||+++|++|||||||+++|.++.+.. +.++.+ .....+...+ +.+.+||+||++.+...+..++..+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999776653 455554 3334444444 78999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHHHH
Q 043946 84 DVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 84 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~~~ 157 (198)
|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999888888776543 23478999999999996542 3333332211 123469999999999999999
Q ss_pred HHHHHHHHH
Q 043946 158 MAMTADIKN 166 (198)
Q Consensus 158 ~~l~~~~~~ 166 (198)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987754
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=1.2e-30 Score=187.05 Aligned_cols=154 Identities=22% Similarity=0.295 Sum_probs=120.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.++|+++|++|||||||+++|.+..+. .+.++.+.+ ...+.+++ +.+.+||+||++.+...+..+++.+|++++|
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 579999999999999999999987654 455555543 34566677 7899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----------------hCCcEEE
Q 043946 83 YDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----------------IGIPFME 144 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 144 (198)
+|+++++++..+..|+..+... ...+.|+++|+||+|+.. .+..+++.+++.. .++++++
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM 177 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence 9999999999999988877554 235789999999999965 4567777766542 2357999
Q ss_pred EeccCCCCHHHHHHHHHHH
Q 043946 145 TSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 145 ~S~~~~~~i~~~~~~l~~~ 163 (198)
+||++|.|++++|++|.+.
T Consensus 178 ~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 178 CSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999754
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1.9e-30 Score=184.54 Aligned_cols=159 Identities=24% Similarity=0.391 Sum_probs=126.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+...+.++.+.+.. .+...+ +.+.+||+||++.+...+..++..+|++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 3689999999999999999999988887677777665543 344454 789999999999999899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|+++
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~ 174 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence 99999999999998888776543 22578999999999996542 2333322211 1235789999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 156 AFMAMTADIKN 166 (198)
Q Consensus 156 ~~~~l~~~~~~ 166 (198)
+|++|.+.+.+
T Consensus 175 l~~~l~~~~~~ 185 (188)
T 1zd9_A 175 TLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 90
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=4.2e-30 Score=183.14 Aligned_cols=154 Identities=21% Similarity=0.280 Sum_probs=126.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIV 82 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v 82 (198)
.+||+++|++|||||||+++|.+..+. .+.++.+. ....+..++ +.+.+||+||++.+...+..+++.+|++++|
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 579999999999999999999987764 44555543 345666777 7899999999999998999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH------------hCCcEEEEeccC
Q 043946 83 YDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE------------IGIPFMETSAKD 149 (198)
Q Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~S~~~ 149 (198)
+|+++++++..+..|+..+... ...+.|+++|+||+|+.+ .+..+++.+.+.. .+++++++||++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (190)
T 1m2o_B 98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVM 175 (190)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTT
T ss_pred EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCc
Confidence 9999999999999888777553 225789999999999975 3456666655432 345799999999
Q ss_pred CCCHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTAD 163 (198)
Q Consensus 150 ~~~i~~~~~~l~~~ 163 (198)
|.|++++|++|.+.
T Consensus 176 g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 176 RNGYLEAFQWLSQY 189 (190)
T ss_dssp TBSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998753
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.4e-30 Score=183.74 Aligned_cols=158 Identities=21% Similarity=0.342 Sum_probs=123.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+++|.+|||||||+++|.++.+. .+.++.+.. ...+..++ ..+.+||+||.+.+...+..++..+|++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999999987765 455555433 34455565 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|+++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence 999999999999999887776542 247899999999999653 34455544432 2345899999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 156 AFMAMTADIKN 166 (198)
Q Consensus 156 ~~~~l~~~~~~ 166 (198)
+|++|.+.+..
T Consensus 168 l~~~l~~~~~~ 178 (187)
T 1zj6_A 168 GLEWMMSRLKI 178 (187)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99999987753
No 92
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=5.4e-30 Score=181.07 Aligned_cols=160 Identities=22% Similarity=0.342 Sum_probs=124.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+++|++|||||||+++|..+.+ ..+.++.+. ....+..++ ..+.+||+||.+.+...+..++..+|++++
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 578999999999999999999997665 344555553 334555665 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-----CCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-----GIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~S~~~~~~i~~ 155 (198)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+..... +++++++||++|.|+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 169 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITE 169 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHH
Confidence 999999999999888887775543 357899999999999653 2344444433222 24699999999999999
Q ss_pred HHHHHHHHHHHhh
Q 043946 156 AFMAMTADIKNRM 168 (198)
Q Consensus 156 ~~~~l~~~~~~~~ 168 (198)
+|++|.+.+.+++
T Consensus 170 l~~~l~~~~~~~q 182 (183)
T 1moz_A 170 GLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887643
No 93
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=2.1e-29 Score=193.68 Aligned_cols=163 Identities=31% Similarity=0.578 Sum_probs=142.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+++|.+|||||||+++|....+...+.++.+... ...+..++..+.+.+||+||.+.+...+..++..+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999998888777777765444 4566788888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------CcCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDK------------KVVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..++...++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999887 68888877654 7899999999998653 45678888999999997 9999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~ 166 (198)
++|.|++++|++|.+.+..
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=4.8e-30 Score=181.43 Aligned_cols=158 Identities=25% Similarity=0.372 Sum_probs=123.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+++|++|||||||+++|.+..+ ..+.++.+ .....+..++ +.+.+||+||++.+...+..++..+|++++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999997754 23445544 3344555665 789999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++.+... ..+++++++||++|.|+++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD 167 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence 99999999999888887766433 23578999999999997543 3333333221 1235799999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 156 AFMAMTADIKN 166 (198)
Q Consensus 156 ~~~~l~~~~~~ 166 (198)
+|++|.+.+.+
T Consensus 168 l~~~l~~~~~~ 178 (181)
T 1fzq_A 168 GMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHh
Confidence 99999887754
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=4e-30 Score=181.72 Aligned_cols=155 Identities=21% Similarity=0.326 Sum_probs=123.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+ ..+.++.+... ..+.+++ ..+.+||+||.+.+...+..++..+|++|+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999998776 44555555333 4555566 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|+++
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 172 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 172 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHH
Confidence 999999999999888887765532 357899999999999653 23444444332 2345799999999999999
Q ss_pred HHHHHHHH
Q 043946 156 AFMAMTAD 163 (198)
Q Consensus 156 ~~~~l~~~ 163 (198)
+|++|.+.
T Consensus 173 l~~~l~~~ 180 (181)
T 2h17_A 173 GLEWMMSR 180 (181)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99999753
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=4.9e-31 Score=188.25 Aligned_cols=157 Identities=20% Similarity=0.373 Sum_probs=118.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|++|||||||+++|..+.+. .+.++.+ .....+...+ +.+.+||+||.+.+...+..++..+|++|+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999987664 3344443 4444555555 789999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH-----HhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFAD-----EIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|+++++++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++..... ..+++++++||++|.|+++
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 180 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD 180 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence 99999999999988888776543 22468999999999996542 3333332211 1234689999999999999
Q ss_pred HHHHHHHHHH
Q 043946 156 AFMAMTADIK 165 (198)
Q Consensus 156 ~~~~l~~~~~ 165 (198)
+|++|.+.+.
T Consensus 181 l~~~l~~~i~ 190 (192)
T 2b6h_A 181 GLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.4e-30 Score=185.22 Aligned_cols=159 Identities=19% Similarity=0.322 Sum_probs=125.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+++|.+|||||||+++|..+.+.. +.++.+ .....+..++ ..+.+||+||++.+...+..++..+|++|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999998776643 445544 3344555565 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHH-----HHhCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFA-----DEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~S~~~~~~i~~ 155 (198)
|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..+++.... ...+++++++||++|.|+++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHH
Confidence 999999999988888877665432 2478999999999996543 233333222 12235799999999999999
Q ss_pred HHHHHHHHHHHh
Q 043946 156 AFMAMTADIKNR 167 (198)
Q Consensus 156 ~~~~l~~~~~~~ 167 (198)
+|++|.+.+.++
T Consensus 174 l~~~l~~~i~~~ 185 (189)
T 2x77_A 174 GMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 98
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.8e-32 Score=196.34 Aligned_cols=161 Identities=32% Similarity=0.604 Sum_probs=133.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|....+...+.++.+... ...+..++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 107 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 107 (204)
Confidence 468999999999999999999998877666666654333 3445566767889999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC------------cCCHHHHHHHHHHhCC-cEEEEec
Q 043946 82 VYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK------------VVSYETAKAFADEIGI-PFMETSA 147 (198)
Q Consensus 82 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~S~ 147 (198)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.. .+..++...+++..++ +++++||
T Consensus 108 v~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 108 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 99999999998886 78777765443 68999999999997542 3455667777888887 8999999
Q ss_pred cCCCCHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADI 164 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~ 164 (198)
++|.|++++|++|.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998765
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.5e-30 Score=184.55 Aligned_cols=163 Identities=25% Similarity=0.445 Sum_probs=120.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCCCcccceeeeEEEEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD--SYLDSYISTIGVDFKIRTVEQ---DGKTVKLQIWDTAGQERFRTITSSYYRGAH 77 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 77 (198)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.. ++..+.+.+||++|.+.+..++..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999974 454556677666665554443 234578999999999998888889999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC---HHHHHHHHHHhCCc----EEEEeccC
Q 043946 78 GIIIVYDVTDQ-ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS---YETAKAFADEIGIP----FMETSAKD 149 (198)
Q Consensus 78 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~S~~~ 149 (198)
++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+.+... .+....++..++++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 57888899998886654 368999999999986543221 12334455556676 99999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 043946 150 SL-NVEQAFMAMTADIKN 166 (198)
Q Consensus 150 ~~-~i~~~~~~l~~~~~~ 166 (198)
+. +++++++.|.+.+.+
T Consensus 161 ~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 161 ESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 96 999999999888765
No 100
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=3.9e-29 Score=175.82 Aligned_cols=158 Identities=18% Similarity=0.144 Sum_probs=121.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..++|+++|.+|||||||+++|.+..+...+.++.+.+.....+..++ ..+.+||+||++.+...+..++..+|++++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 568999999999999999999999887776666666666666677777 567899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC---------CcEEEEeccCCCC
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG---------IPFMETSAKDSLN 152 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~~ 152 (198)
|+|++++.... ++..+......+.|+++|+||+|+... ..++........+ ++++++||++|.|
T Consensus 85 v~d~~~~~~~~----~~~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 85 VVAADDGVMPQ----TVEAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEETTCCCCHH----HHHHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEECCCCCcHH----HHHHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 99998843211 112222223347899999999999653 2333333332222 4799999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 043946 153 VEQAFMAMTADIKNRM 168 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~ 168 (198)
++++|++|.+.+....
T Consensus 158 v~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 158 LDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhc
Confidence 9999999998877643
No 101
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=8.8e-30 Score=182.23 Aligned_cols=160 Identities=22% Similarity=0.273 Sum_probs=118.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccc---cccccCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFRTIT---SSYYRGAH 77 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~~~~~~d 77 (198)
+.+||+++|.+|||||||++++.+. +......+...........+. +..+.+.+||++|++.+.... ..++..+|
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTG 97 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCC
Confidence 5789999999999999999988764 322222222222222232332 455789999999999887665 78999999
Q ss_pred EEEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------CcCCHHHHHHHHH----HhCCcEEE
Q 043946 78 GIIIVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK-------KVVSYETAKAFAD----EIGIPFME 144 (198)
Q Consensus 78 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~----~~~~~~~~ 144 (198)
++|+|||++++ +++..+..|+..+... ..+.|+++|+||+|+.+. +.+..++...++. ..++++++
T Consensus 98 ~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e 176 (196)
T 3llu_A 98 ALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYL 176 (196)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred EEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEE
Confidence 99999999997 6666777777666443 347999999999998652 2333445566666 56789999
Q ss_pred EeccCCCCHHHHHHHHHHHH
Q 043946 145 TSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 145 ~S~~~~~~i~~~~~~l~~~~ 164 (198)
+||++ .|++++|++|.+.+
T Consensus 177 ~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 177 TSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp ECTTS-THHHHHHHHHHHHT
T ss_pred EEech-hhHHHHHHHHHHHh
Confidence 99999 99999999998764
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=1.2e-28 Score=180.40 Aligned_cols=165 Identities=21% Similarity=0.180 Sum_probs=117.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF---------RTITSSY 72 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~ 72 (198)
..++|+|+|.+|||||||+++|.+..+.....+..+.+.....+...+ ..+.+||+||.... ...+..+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 468999999999999999999998765433333333344444445555 68999999998321 1112345
Q ss_pred ccCccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHH---HHHHHHHHhC--CcEEEE
Q 043946 73 YRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYE---TAKAFADEIG--IPFMET 145 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~~ 145 (198)
+..+|++|+|+|++++.++. ....|+..+... ..+.|+++|+||+|+.+.+.+..+ ....++...+ ++++++
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 67889999999999987754 223455444332 136899999999999876655544 4556667776 789999
Q ss_pred eccCCCCHHHHHHHHHHHHHHhhh
Q 043946 146 SAKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
||++|.|++++|++|.+.+.+...
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876554
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=7.9e-29 Score=172.66 Aligned_cols=153 Identities=20% Similarity=0.269 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR------TITSSYYR-- 74 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 74 (198)
.++|+++|++|||||||+++|.+..+.....++.+.+.....+..++ ..+.+|||||.+.+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 57999999999999999999998765545555555555555666666 689999999988764 23344554
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+...+.+.. +...++..++++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 7999999999998654 3446655544 2689999999999865433332 3567778889999999999999999
Q ss_pred HHHHHHHHHH
Q 043946 155 QAFMAMTADI 164 (198)
Q Consensus 155 ~~~~~l~~~~ 164 (198)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=188.76 Aligned_cols=162 Identities=26% Similarity=0.400 Sum_probs=120.5
Q ss_pred ceeEEEEEcCC---------CCcHHHHHHHHhc---CCCCCCCcccc-eeeeEEEEE--------------EECCeEEEE
Q 043946 2 YLFKLLLIGDS---------GVGKSCLLLRFAD---DSYLDSYISTI-GVDFKIRTV--------------EQDGKTVKL 54 (198)
Q Consensus 2 ~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~~ 54 (198)
+.+||+|+|.+ |||||||+++|.+ ..+...+.++. +.++....+ ..++..+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 56999999999 9999999999998 45555555543 222221111 134566889
Q ss_pred EEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEECCCh--
Q 043946 55 QIWD-----------------------TAGQERFRTITSSYYR---------------------GAHGIIIVYDVTDQ-- 88 (198)
Q Consensus 55 ~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~-- 88 (198)
.+|| ++|++.+..++..++. ++|++|+|||++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 9999 6677777777777777 79999999999998
Q ss_pred hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 89 ESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 89 ~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.++..+..|+..+... ...+.|+++|+||+|+.+.+.+ ++...++.. .+++++++||++|.|++++|++|.+.+.
T Consensus 178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 8999999999888665 3357899999999998654433 566667665 4789999999999999999999988763
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=1.5e-27 Score=172.78 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=112.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGK-TVKLQIWDTAGQERFRT-ITSSYYRGAHGI 79 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~ 79 (198)
..+||+++|++|||||||+++|.+..+...+.++ +.... .+.+++. .+.+.+||+||++.+.. ++..++..+|++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 4689999999999999999999988776665433 22332 3555543 47899999999998887 788899999999
Q ss_pred EEEEECCChh-hHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCCCCCCCcCC--HHHHHHHHH-----------------
Q 043946 80 IIVYDVTDQE-SFNNVKQ-WLNEIDRY--ASENVNKLLVGNKCDLTDKKVVS--YETAKAFAD----------------- 136 (198)
Q Consensus 80 i~v~d~~~~~-s~~~~~~-~~~~~~~~--~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~----------------- 136 (198)
|+|||+++.. ++..+.. |...+... ...+.|+++|+||+|+....... .+.+.....
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999853 4544444 44444332 23468999999999997653211 111111111
Q ss_pred ----------------Hh--CCcEEEEeccCC------CCHHHHHHHHHHH
Q 043946 137 ----------------EI--GIPFMETSAKDS------LNVEQAFMAMTAD 163 (198)
Q Consensus 137 ----------------~~--~~~~~~~S~~~~------~~i~~~~~~l~~~ 163 (198)
.. ++.|+++||++| .|++++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 01 557999999999 9999999999875
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=184.00 Aligned_cols=158 Identities=22% Similarity=0.389 Sum_probs=118.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|....+... .++.+ .....+...+ +.+.+|||||++.+..++..++..+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 357999999999999999999998776433 34433 3334455555 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~ 155 (198)
|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..+++...... .+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999998888776655433 23578999999999997643 33333332221 234699999999999999
Q ss_pred HHHHHHHHHHH
Q 043946 156 AFMAMTADIKN 166 (198)
Q Consensus 156 ~~~~l~~~~~~ 166 (198)
+|++|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=4.6e-27 Score=189.89 Aligned_cols=163 Identities=24% Similarity=0.418 Sum_probs=124.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
..+||+|+|.+|||||||+++|.+..+. .+.+|.+ .....+...+ +.+.+|||+|.+.+..++..++..+|++|+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccc--eeEEEEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999987754 3445544 3334455555 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH-----hCCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-----IGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~S~~~~~~i~~ 155 (198)
|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.. ..+++...... .+++++++||++|.|+++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 473 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 473 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHH
Confidence 999999999999988887765432 2478999999999996542 33333322211 123599999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 043946 156 AFMAMTADIKNRMASQ 171 (198)
Q Consensus 156 ~~~~l~~~~~~~~~~~ 171 (198)
+|++|.+.+.++....
T Consensus 474 l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 474 GLTWLTSNYKSKLAAA 489 (497)
T ss_dssp HHHHHHHHCC------
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999998876554443
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=7.9e-28 Score=183.21 Aligned_cols=159 Identities=22% Similarity=0.338 Sum_probs=124.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL---DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-----RTITSSYY 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 73 (198)
..+||+++|.+|||||||+++|.+.... ..+.+|.+ .....+.+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999876321 12334444 3333444444 489999999999987 67788899
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--CCc----CCHHHHHHHHHHhC---CcE
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTD--KKV----VSYETAKAFADEIG---IPF 142 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~ 142 (198)
+.+|++|+|||++++.++..+..|...+.... ..+.|+++|+||+|+.+ .+. +..+++.+++..++ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999998877766554432 34799999999999976 332 44577788888887 789
Q ss_pred EEEeccCCCCHHHHHHHHHHHH
Q 043946 143 METSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 143 ~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
+++||++ .++.++|..+.+.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999999887654
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=4.5e-28 Score=172.10 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=115.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG-----------QERFRTITSSY 72 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 72 (198)
+||+++|.+|||||||+++|.+..+...+.++.+... ..+... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999998887766666544333 333333 589999999 55566666666
Q ss_pred ccC-ccEEEEEEECCChhhHHHH-HHHHHH---------HHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCc
Q 043946 73 YRG-AHGIIIVYDVTDQESFNNV-KQWLNE---------IDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIP 141 (198)
Q Consensus 73 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 141 (198)
+.. ++++++++++.|..++..+ ..|... +......+.|+++|+||+|+.... .++...++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 665 6666666666666666655 445431 222223478999999999987543 56677888888864
Q ss_pred -------EEEEeccCCCCHHHHHHHHHHHHHHhhh
Q 043946 142 -------FMETSAKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 142 -------~~~~S~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
++++||++|.|++++|++|.+.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876443
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=9e-28 Score=170.38 Aligned_cols=157 Identities=20% Similarity=0.275 Sum_probs=120.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR------TITSSYYR-- 74 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 74 (198)
.++|+++|++|||||||+++|.+........++.+.+.....+..++ ..+.+||+||.+.+. .++..++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 57999999999999999999998655444555555556666677766 789999999988764 23445553
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVE 154 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~ 154 (198)
.+|++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.....+. .+...+++.++++++++||+++.|++
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~ 157 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIE 157 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHH
Confidence 5999999999876 3444566665544 468999999999986544333 35667788889999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 043946 155 QAFMAMTADIKNRM 168 (198)
Q Consensus 155 ~~~~~l~~~~~~~~ 168 (198)
++|++|.+.+.+..
T Consensus 158 ~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 158 ELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998886543
No 111
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=2.9e-27 Score=175.84 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=119.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI------TSSYY-- 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~-- 73 (198)
..++|+++|.+|||||||+|+|.+..+.....++.+.+.....+...+ ..+.+||+||...+... ...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 468999999999999999999998665444455555555555555555 78999999998876542 24454
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++++|+|+++.++.. .|...+.. .+.|+++|+||+|+...+.+. .+...+++.++++++++||++|.|+
T Consensus 82 ~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp SCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTTH
T ss_pred cCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcCH
Confidence 5899999999999876543 34444443 378999999999986544433 2367788888999999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 154 EQAFMAMTADIK 165 (198)
Q Consensus 154 ~~~~~~l~~~~~ 165 (198)
+++|++|.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.2e-27 Score=170.76 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=105.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC----------cccccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG----------QERFRTITSS 71 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~ 71 (198)
..++|+|+|.+|||||||+++|.+..+...+.++.+.+.....+..++ .+.+||+|| .+.+...+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 468999999999999999999998775555555555455444455544 589999999 5666666667
Q ss_pred cccCc---cEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCH--HHHHH-HHHHhCCcEEEE
Q 043946 72 YYRGA---HGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSY--ETAKA-FADEIGIPFMET 145 (198)
Q Consensus 72 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~~~~ 145 (198)
++..+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+...+.+.. +++.+ +....+++++++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence 76666 9999999999876655432 2222222 4689999999999976543321 22222 221235689999
Q ss_pred eccCCCCHHHHHHHHHHHHH
Q 043946 146 SAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~ 165 (198)
||++|.|++++|++|.+.+.
T Consensus 175 Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred EccCCCCHHHHHHHHHHHhc
Confidence 99999999999999988653
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=4.6e-27 Score=162.53 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER-------FRTITSSYYRG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 75 (198)
.||+++|++|||||||+++|.+.... ....++.+.+.....+..++ ..+.+||+||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999986642 22333444455556666676 4789999999876 33455667899
Q ss_pred ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCHH
Q 043946 76 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNVE 154 (198)
Q Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~ 154 (198)
+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.+.. +++.+++ ..++ +++++||++|.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999998543221 112222222 368999999999996542 2333444 5677 89999999999999
Q ss_pred HHHHHHHHHH
Q 043946 155 QAFMAMTADI 164 (198)
Q Consensus 155 ~~~~~l~~~~ 164 (198)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 114
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=2.2e-27 Score=176.19 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=117.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT----------ITSSYY 73 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 73 (198)
.+|+++|.+|||||||+|+|.+........++.+.+.....+..++ ..+.+||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998765555566666667777777777 5899999999876653 345566
Q ss_pred --cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCC
Q 043946 74 --RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSL 151 (198)
Q Consensus 74 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 151 (198)
..+|++|+|+|+++.++...+..+ +. ..+.|+++|+||+|+....... .....+...++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999987655443333 22 2378999999999986543221 23455777889999999999999
Q ss_pred CHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTAD 163 (198)
Q Consensus 152 ~i~~~~~~l~~~ 163 (198)
|++++|++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 115
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=2.5e-27 Score=177.18 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=114.0
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR------TITSSYYR 74 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~ 74 (198)
++.++|+++|.+|||||||+|+|.+........++.+.+. ....+.. ...+.+||+||...+. .+...++.
T Consensus 1 ~~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~ 77 (272)
T 3b1v_A 1 GSMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL 77 (272)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence 3578999999999999999999998654444445444333 3333443 4679999999988765 33455554
Q ss_pred --CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCC
Q 043946 75 --GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLN 152 (198)
Q Consensus 75 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 152 (198)
.+|++++|+|+++.++. ..|...+.. .+.|+++++||+|+.....+. .....++..++++++++||++|.|
T Consensus 78 ~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 78 SQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred cCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 69999999999886554 345444444 378999999999986543333 345677888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 153 VEQAFMAMTADI 164 (198)
Q Consensus 153 i~~~~~~l~~~~ 164 (198)
++++|++|.+.+
T Consensus 151 i~el~~~i~~~~ 162 (272)
T 3b1v_A 151 VDQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2.9e-27 Score=165.87 Aligned_cols=153 Identities=20% Similarity=0.230 Sum_probs=112.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 73 (198)
.++|+++|.+|||||||+++|.+.... ....++.+.+.....+.+++ ..+.+||+||.+..... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999976532 22334444555666777777 45899999997643211 11357
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++++|+|++++.++. ...|+..+......+.|+++|+||+|+.+... .++...+.+++++||++|.|+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv 153 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGV 153 (172)
T ss_dssp HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTH
T ss_pred HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCH
Confidence 8999999999999887765 34677767666555799999999999854311 011124568999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 154 EQAFMAMTADIK 165 (198)
Q Consensus 154 ~~~~~~l~~~~~ 165 (198)
+++|++|.+.+.
T Consensus 154 ~~l~~~l~~~~~ 165 (172)
T 2gj8_A 154 DVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 999999988764
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=5.1e-26 Score=173.23 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=122.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEEC-CeEEEEEEEeCCCccccc----------cccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQERFR----------TITS 70 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~----------~~~~ 70 (198)
.-.|+++|.+|||||||+|+|++..+.. ...+..+.......+..+ + .++.+|||||..... ....
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 3579999999999999999999877642 222333333343444454 4 789999999985433 4556
Q ss_pred ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--CcEEEEecc
Q 043946 71 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAK 148 (198)
Q Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~ 148 (198)
.++..+|++++|+|++++.+......|+..+.. .+.|+++|+||+|+........+.+..+...++ .+++++||+
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~ 164 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISAL 164 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTT
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 778899999999999998777777767776655 368999999999997444445667777777775 789999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 043946 149 DSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 149 ~~~~i~~~~~~l~~~~~~ 166 (198)
+|.|++++|++|.+.+.+
T Consensus 165 ~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 165 KGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTBSHHHHHHHHHHHSCB
T ss_pred CCCCHHHHHHHHHHhCcc
Confidence 999999999999887753
No 118
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.1e-27 Score=181.41 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=113.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC---CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCccE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLD---SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT---ITSSYYRGAHG 78 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 78 (198)
||+++|..|||||||++++.+...+. ...+|.+.+... + + ..+++++|||+|++++.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887543322 244555555442 2 2 237899999999999864 46889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-------CcCCHHHHHHHHHH----hCCcEEEE
Q 043946 79 IIIVYDVTDQ--ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK-------KVVSYETAKAFADE----IGIPFMET 145 (198)
Q Consensus 79 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 145 (198)
+|+|||++++ +....+..|+..+... ..+.|+++++||+|+... +.+..++.+++++. +++.|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3333333344444433 357999999999999754 23445555666664 57899999
Q ss_pred eccCCCCHHHHHHHHHHHHHH
Q 043946 146 SAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 146 S~~~~~~i~~~~~~l~~~~~~ 166 (198)
||++ .++.++|..|.+.+..
T Consensus 155 SAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSST
T ss_pred ccCC-CcHHHHHHHHHHHHHh
Confidence 9998 5899999999876643
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=3e-27 Score=192.42 Aligned_cols=162 Identities=21% Similarity=0.318 Sum_probs=122.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEE------EEE--CCeEEEEEEEeCCCcccccccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRT------VEQ--DGKTVKLQIWDTAGQERFRTITSSYY 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~ 73 (198)
..+||+++|.+|||||||+++|.+..+...+.++.+.+..... +.+ ++..+.+.+||+||++.+......++
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l 119 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM 119 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence 4689999999999999999999998887777777776655432 112 22347899999999999998899999
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++|+|+|+++.+ .+..|...+..... +.|+++|+||+|+...+.+..+++...+...+++++++||++|.|+
T Consensus 120 ~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi 195 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTDS---NKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGV 195 (535)
T ss_dssp HSSEEEEEEECGGGGG---GHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----C
T ss_pred cCCcEEEEEEeCCCch---hHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCH
Confidence 9999999999998754 45678887877654 6899999999999877777888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043946 154 EQAFMAMTADIKNR 167 (198)
Q Consensus 154 ~~~~~~l~~~~~~~ 167 (198)
+++|++|.+.+.+.
T Consensus 196 ~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 196 ESIAKSLKSAVLHP 209 (535)
T ss_dssp TTHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999888653
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=2.6e-26 Score=172.06 Aligned_cols=158 Identities=23% Similarity=0.220 Sum_probs=120.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT------ITSSYY-- 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 73 (198)
+.++|+++|++|||||||+|+|.+........++.+.+.....+.+.+ ..+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 468999999999999999999998766555566666667767777777 5699999999887654 344455
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++++|+|+++... ...+...+... ...|+++|+||+|+........ ....+.+.++++++++|+++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 78999999999988543 23333334333 1289999999999854332222 266677888999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043946 154 EQAFMAMTADIKNR 167 (198)
Q Consensus 154 ~~~~~~l~~~~~~~ 167 (198)
+++|++|.+.+.+.
T Consensus 154 ~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 154 EELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887543
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=5.7e-27 Score=175.77 Aligned_cols=154 Identities=17% Similarity=0.205 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI----------TSSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 72 (198)
.++|+++|.+|||||||+|+|.+........++.+.+.....+...+ ..+.+||+||...+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999998765445556666666666666666 56889999998776521 2223
Q ss_pred c--cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCC
Q 043946 73 Y--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDS 150 (198)
Q Consensus 73 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 150 (198)
+ ..+|++|+|+|+++.+....+..+ +... +.|+++|+||+|+.+.... ......+.+.++++++++||++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~-~~~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNI-RIEIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTE-EECHHHHHHHHTSCEEECCCGGG
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhH-HHHHHHHHHhcCCCEEEEEcCCC
Confidence 2 789999999999986654444333 3333 6899999999998643322 12345677788999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTADIK 165 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~ 165 (198)
.|++++|++|.+.+.
T Consensus 154 ~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 154 RGIEALKLAIDRYKA 168 (274)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999876554
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=3.2e-26 Score=163.02 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=108.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC----------cccccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG----------QERFRTITSS 71 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~ 71 (198)
..+||+|+|.+|||||||+++|.+... ....++.+.+........+. .+.+||+|| .+.+...+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 457999999999999999999998763 23344444444444444443 478999999 4455555556
Q ss_pred cccCc---cEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--CCHHHHHHHHHHhC-CcEE
Q 043946 72 YYRGA---HGIIIVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV--VSYETAKAFADEIG-IPFM 143 (198)
Q Consensus 72 ~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~-~~~~ 143 (198)
++..+ |++++|+|+++..+ ...+..|+... +.|+++|+||+|+.+... ...+++..++...+ ++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 66554 99999999987533 22333333222 689999999999975432 22344555555534 6899
Q ss_pred EEeccCCCCHHHHHHHHHHHHHH
Q 043946 144 ETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 144 ~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++||++|.|++++|++|.+.+.+
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEecCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999999987753
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=4.8e-26 Score=165.74 Aligned_cols=162 Identities=15% Similarity=0.132 Sum_probs=105.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-CeEEEEEEEeCCCc----------cccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-GKTVKLQIWDTAGQ----------ERFRTITS 70 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~~~~ 70 (198)
..++|+|+|.+|||||||+++|.+...........+.+......... .....+.+|||||. +.+.....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45799999999999999999999876221222222223333333333 22367999999994 23334444
Q ss_pred ccccC---ccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC--HHHHHHHHHH-------h
Q 043946 71 SYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS--YETAKAFADE-------I 138 (198)
Q Consensus 71 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~~~~~~~~~-------~ 138 (198)
.++.. +|++++|+|+.++.+. ....++..+.. .+.|+++|+||+|+....... .+.+.+.... .
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAG 183 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCC
Confidence 45444 8889999999875331 12334444433 368999999999986543211 1222333333 3
Q ss_pred CCcEEEEeccCCCCHHHHHHHHHHHHHHh
Q 043946 139 GIPFMETSAKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 139 ~~~~~~~S~~~~~~i~~~~~~l~~~~~~~ 167 (198)
+.+++++||++|.|++++|++|.+.+...
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 46899999999999999999999887543
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=3.9e-25 Score=176.64 Aligned_cols=156 Identities=19% Similarity=0.152 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 73 (198)
.++|+|+|.+|||||||+|+|.+... .....++.+.+.....+..++ ..+.+|||||...+... ...++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 47899999999999999999997642 234445555556666777777 67999999998765433 24478
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++++|+|++++.++..+..+...+.... +.|+++|+||+|+...... ..+.+......+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCH
Confidence 99999999999999877654334443333332 6899999999999765432 223343332478999999999999
Q ss_pred HHHHHHHHHHHH
Q 043946 154 EQAFMAMTADIK 165 (198)
Q Consensus 154 ~~~~~~l~~~~~ 165 (198)
+++|++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=1.5e-25 Score=178.28 Aligned_cols=161 Identities=18% Similarity=0.181 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE----------RFRTITS 70 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 70 (198)
..++|+++|.+|||||||+|+|++.... ....++.+.+.....+..++ ..+.+|||||.. .+..++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999986542 23344445555556677777 468999999973 3333222
Q ss_pred -ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHH-HHHH----hCCcEEE
Q 043946 71 -SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKA-FADE----IGIPFME 144 (198)
Q Consensus 71 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~ 144 (198)
.+++.+|++++|+|++++.+.... .|...+.. .+.|+++|+||+|+.+.+....++..+ +... .++++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 477889999999999998776554 45555543 368999999999997655443444333 2222 2579999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHhh
Q 043946 145 TSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 145 ~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
+||++|.|++++|+++.+.+.+..
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EecccCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998887643
No 126
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=4.8e-25 Score=175.47 Aligned_cols=179 Identities=20% Similarity=0.272 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER---------FRTITSSYY 73 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 73 (198)
.+|+++|.+|||||||+|+|++.+.. ....++.+.+.....+.+.+ ..+.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999986532 23445555566667777887 4688999999653 233456688
Q ss_pred cCccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHH-HHHHHHhCC-cEEEEeccC
Q 043946 74 RGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETA-KAFADEIGI-PFMETSAKD 149 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~S~~~ 149 (198)
+.+|++++|+|+.++.+.. .+..|+ .. .++|+++|+||+|+... . ..+. .++. ..++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l---~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFL---RK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHH---HH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998754432 222332 22 26899999999997432 1 1222 3332 4566 789999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhc-CcCCCCCCCCccccCCCCCCCCCC
Q 043946 150 SLNVEQAFMAMTADIKNRMAS-QPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
|.|+.++|++|.+.+.+.... ...........+.+-++++.||++
T Consensus 150 g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKST 195 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKST 195 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHH
T ss_pred CCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHH
Confidence 999999999999988653211 011112345678889999999886
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=3.2e-24 Score=166.51 Aligned_cols=161 Identities=17% Similarity=0.189 Sum_probs=119.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------ccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRT---------ITSSY 72 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~ 72 (198)
..++|+++|.+|||||||+++|.+........+..+.......+...+ ..+.+|||||...... ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 357899999999999999999998654222223333334444444454 6799999999754321 12234
Q ss_pred ccCccEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCC
Q 043946 73 YRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDS 150 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~ 150 (198)
...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+..... .++...++...+++++++||++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence 45799999999999876 66777778887776544 689999999999965432 24455666677889999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 043946 151 LNVEQAFMAMTADIKNR 167 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~~~ 167 (198)
.|++++|++|.+.+...
T Consensus 321 ~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999888654
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=4.2e-25 Score=176.55 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=118.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS-YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG----------QERFRTITS 70 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~ 70 (198)
..++|+++|.+|+|||||+++|.+.. ......++.+.+.....+..++ ..+.+||||| .+.+...+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 46899999999999999999999654 2223344444455556667777 4799999999 455554444
Q ss_pred -ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-----CCcEEE
Q 043946 71 -SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-----GIPFME 144 (198)
Q Consensus 71 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~ 144 (198)
.+++.+|++++|+|++++.. .....|...+.. .+.|+++|+||+|+.+.+....++..+.+... ++++++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 37789999999999987543 222344444443 36899999999999876666667777766655 579999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHhhh
Q 043946 145 TSAKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 145 ~S~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
+||++|.|++++|++|.+.+.+...
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988866543
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=1.1e-25 Score=163.32 Aligned_cols=142 Identities=20% Similarity=0.294 Sum_probs=103.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCC---CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLD---SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRG--- 75 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 75 (198)
..++|+++|++|||||||+++|.+..+.. .+.++.+..+ ....+.+||+||++.+...+..++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 46899999999999999999999876543 2333332222 23579999999999988888888877
Q ss_pred -ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCcCC------HHHHHHHHHHhCCcEE
Q 043946 76 -AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASENVNKLLVGNKCDLTDKKVVS------YETAKAFADEIGIPFM 143 (198)
Q Consensus 76 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~ 143 (198)
+|++|+|+|++ +++++..+..|+..+... ...+.|+++|+||+|+.....+. .+++..++...++.++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLN 161 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999 888888888887766554 33579999999999997665433 3445666666778899
Q ss_pred EEeccCCCC
Q 043946 144 ETSAKDSLN 152 (198)
Q Consensus 144 ~~S~~~~~~ 152 (198)
++|+++|.+
T Consensus 162 ~~Sa~~~~~ 170 (218)
T 1nrj_B 162 EVERKINEE 170 (218)
T ss_dssp C--------
T ss_pred ccccccccc
Confidence 999998864
No 130
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=6.2e-24 Score=161.05 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=107.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--------FRTITSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 73 (198)
..+|+++|.+|||||||+|+|++..+.. ...+..+.......+..++ .++.+|||||... +......++
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 4579999999999999999999876642 2223222232223333444 7899999999765 344556688
Q ss_pred cCccEEEEEEECCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh-C-CcEEEEeccCC
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-G-IPFMETSAKDS 150 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~-~-~~~~~~S~~~~ 150 (198)
..+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+..... .+......+ + .+++++||++|
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g 157 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDE 157 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCH
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCC
Confidence 9999999999998764432 2333 4444332 3689999999999865432 022233332 2 47899999999
Q ss_pred CCHHHHHHHHHHHHH
Q 043946 151 LNVEQAFMAMTADIK 165 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~ 165 (198)
.|++++|++|.+.+.
T Consensus 158 ~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 158 RQVAELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999987653
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=6e-24 Score=169.96 Aligned_cols=153 Identities=23% Similarity=0.266 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------ccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE-RFRT--------ITSSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 72 (198)
.++|+++|.+|||||||+|+|.+... .....++++.+.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 37999999999999999999997642 234445555666667777777 678999999987 4432 12456
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCC
Q 043946 73 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLN 152 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 152 (198)
+..+|++|+|+|++++.++.... ++..+ .+.|+++|+||+|+... ...+++..+.. .+.+++++||++|.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 78999999999999877665432 22222 26899999999999653 34455544432 346899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 043946 153 VEQAFMAMTADIKN 166 (198)
Q Consensus 153 i~~~~~~l~~~~~~ 166 (198)
++++|++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=1.3e-24 Score=166.95 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=116.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER----FRTITSSYY---RGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~ 76 (198)
.+|+|+|.+|||||||+++|..........+..+.......+.+++. ..+.+||+||... ...+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 36899999999999999999875432122222223333334555532 4789999999543 222333443 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--CcEEEEeccC
Q 043946 77 HGIIIVYDVTD---QESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAKD 149 (198)
Q Consensus 77 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~ 149 (198)
|++|+|+|+++ ++++..+..|...+..+.. .+.|+++|+||+|+... .+..+.+...+. .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7888888999988887642 47899999999998643 244566666666 6899999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 043946 150 SLNVEQAFMAMTADIKN 166 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~ 166 (198)
+.|+++++++|.+.+.+
T Consensus 314 g~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 314 REGLRELLFEVANQLEN 330 (342)
T ss_dssp SSTTHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=6.7e-25 Score=172.71 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------ccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-------TSSYY 73 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~ 73 (198)
..++|+|+|..|+|||||+++|++..+. ....++.+.+.....+...+. ..+.+|||||++.+..+ ...++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~l 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRVF 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHHH
Confidence 4689999999999999999999986652 233444455556666666654 37999999998876544 24478
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++|+|+|+.... ....|+..+... +.|+++|+||+|+...... +..++++..++++++++||++|.|+
T Consensus 112 ~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI 183 (423)
T 3qq5_A 112 YRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGF 183 (423)
T ss_dssp TSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred hcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCH
Confidence 8999999999994433 235566656554 7899999999999766543 5566666677889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043946 154 EQAFMAMTADIKNR 167 (198)
Q Consensus 154 ~~~~~~l~~~~~~~ 167 (198)
+++|++|.+.+.+.
T Consensus 184 ~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 184 DDIGKTISEILPGD 197 (423)
T ss_dssp TTHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999888543
No 134
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.90 E-value=2.8e-23 Score=169.69 Aligned_cols=159 Identities=23% Similarity=0.281 Sum_probs=111.9
Q ss_pred CceeEEEEEcCCCCcHHHHHHHHhcCC--CCC-------------CCcccceeeeEEEEEEE---CCeEEEEEEEeCCCc
Q 043946 1 DYLFKLLLIGDSGVGKSCLLLRFADDS--YLD-------------SYISTIGVDFKIRTVEQ---DGKTVKLQIWDTAGQ 62 (198)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~ 62 (198)
++..+|+|+|+.++|||||+++|+... ... +.....+.......+.+ ++..+.+.+|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 356799999999999999999997521 110 00111222222222322 455689999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC--
Q 043946 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-- 140 (198)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 140 (198)
.++...+..++..+|++|+|+|++++.+......|..... .+.|+++++||+|+.+.+ ..+...++...+++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence 9999889999999999999999998776666666665442 368999999999997643 23344556666676
Q ss_pred -cEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 141 -PFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 141 -~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.++++||++|.|++++|++|.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 4899999999999999999987764
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=2.4e-23 Score=167.03 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS-------YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRG 75 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 75 (198)
.++|+++|..++|||||+++|.+.. ...+..++.+.+.....+..++ ..+.+||+||++.+.......+..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHhh
Confidence 5899999999999999999998755 2333334444444444555666 789999999999998888889999
Q ss_pred ccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--CCHHHHHHHHHHh----CCcEEEEe
Q 043946 76 AHGIIIVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV--VSYETAKAFADEI----GIPFMETS 146 (198)
Q Consensus 76 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~S 146 (198)
+|++|+|+|+++ +++...+. .+.. .+.|+++++||+|+.+... ...+++.+++... +++++++|
T Consensus 97 aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS 169 (482)
T 1wb1_A 97 IDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS 169 (482)
T ss_dssp CCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred CCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 999999999988 44433322 2322 2678899999999975321 1134455555555 57899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q 043946 147 AKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~ 165 (198)
|++|.|+++++++|.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998776
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1e-24 Score=173.42 Aligned_cols=178 Identities=19% Similarity=0.177 Sum_probs=114.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE--------RFRTITSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~ 73 (198)
..+|+++|.+|||||||+|+|.+..... ...++.+.+.....+.+.+ ..+.+|||||.+ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 3689999999999999999999865431 2223333333333343444 679999999975 4555667788
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCC
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLN 152 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~ 152 (198)
..+|++|+|+|+.++.+... ..+...+ ...+.|+++|+||+|+..... +..++. ..++ .++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d-~~~~~~l---~~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH-HHHHHHH---TTCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHH---HHcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999988655432 1222223 234789999999999864321 111122 3454 789999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 153 VEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 153 i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
+.+++++|.+.+.+.. .......+.++.+-+.++.||++
T Consensus 152 v~~L~~~i~~~l~~~~---~~~~~~~~~ki~lvG~~nvGKSS 190 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGRPNVGKSS 190 (436)
T ss_dssp HHHHHHHHHHTGGGCC---SSCCCTTCEEEEEECSTTSSHHH
T ss_pred hHHHHHHHHHhcCccc---cccccccCcEEEEEcCCCCCHHH
Confidence 9999999988775321 11123455788888999999876
No 137
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=7.8e-23 Score=150.46 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=108.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcc--cceeeeEEEEEEECCeEEEEEEEeCCCcc-----------ccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIS--TIGVDFKIRTVEQDGKTVKLQIWDTAGQE-----------RFRTI 68 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~~~ 68 (198)
..++|+|+|.+|||||||+|+|++........+ +.+.......+.+.+ ..+.+|||||.. .+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998776555444 344455556666777 578999999943 33444
Q ss_pred ccccccCccEEEEEEECCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC------HHHHHHHHHHhCC
Q 043946 69 TSSYYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS------YETAKAFADEIGI 140 (198)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~ 140 (198)
...+++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+.+..+...++.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 4556678899999999875332 22222222222221 135999999999986544332 2467778888888
Q ss_pred cEEEEeccCC-----CCHHHHHHHHHHHHHH
Q 043946 141 PFMETSAKDS-----LNVEQAFMAMTADIKN 166 (198)
Q Consensus 141 ~~~~~S~~~~-----~~i~~~~~~l~~~~~~ 166 (198)
.++.++...+ .++.++|+.+.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888877644 6889999988777755
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.90 E-value=6.4e-23 Score=167.35 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=112.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--CCCC-------------CCcccceeeeEEEEEEE---CCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--SYLD-------------SYISTIGVDFKIRTVEQ---DGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~ 63 (198)
+..+|+++|+.++|||||+++|+.. .... +.....+.......+.+ ++..+.+.+|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 4679999999999999999999752 1111 00111111111112222 4556899999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC---
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI--- 140 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--- 140 (198)
++...+...+..+|++|+|+|++++.+......|..... .+.|+++++||+|+...+ ..+...++...+++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGG
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcc
Confidence 998888889999999999999999877777677765442 368999999999997643 22334455555665
Q ss_pred cEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 141 PFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 141 ~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.++++||++|.|++++|++|.+.+.
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999999987764
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=1.4e-22 Score=159.94 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=102.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCccccee--eeEEEEEEE-------------C--C----eEEEEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD---SYLDSYISTIGV--DFKIRTVEQ-------------D--G----KTVKLQIW 57 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~i~ 57 (198)
..++|+++|+.++|||||+++|.+. .+..+..+..+. .+....+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 3589999999999999999999853 233333342232 232222211 1 1 13689999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--CCHHHH
Q 043946 58 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV--VSYETA 131 (198)
Q Consensus 58 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~ 131 (198)
|+||++.+.......+..+|++|+|+|++++ ++..++. .+... . ..|+++++||+|+.+... ...+++
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l-~-~~~iivv~NK~Dl~~~~~~~~~~~~i 160 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL-G-IDKIIIVQNKIDLVDEKQAEENYEQI 160 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT-T-CCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc-C-CCeEEEEEEccCCCCHHHHHHHHHHH
Confidence 9999999887777788899999999999953 3433333 22222 1 248999999999976543 234556
Q ss_pred HHHHHHh---CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 132 KAFADEI---GIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 132 ~~~~~~~---~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.+++... +++++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6665542 578999999999999999999987553
No 140
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=8.5e-23 Score=152.05 Aligned_cols=161 Identities=13% Similarity=0.129 Sum_probs=108.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC-CCCCCccc-ceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS-YLDSYIST-IGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI----------- 68 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 68 (198)
..++|+|+|.+|||||||+++|++.. +.....++ .+.......+.+.+ ..+.+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999866 33333333 34444555566666 67999999997654322
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEe-CCCCCCCCcCCH-------HHHHHHHHHh
Q 043946 69 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASE--NVNKLLVGN-KCDLTDKKVVSY-------ETAKAFADEI 138 (198)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~n-K~D~~~~~~~~~-------~~~~~~~~~~ 138 (198)
...+++.+|++|+|+|+++..... ..++..+...... ..|+++++| |+|+.... ... +++..+....
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHh
Confidence 123678899999999998622211 1222333333221 357777776 99997432 111 2344466666
Q ss_pred CCcE-----EEEeccCCCCHHHHHHHHHHHHHHh
Q 043946 139 GIPF-----METSAKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 139 ~~~~-----~~~S~~~~~~i~~~~~~l~~~~~~~ 167 (198)
+..+ +++||+++.|++++|++|.+.+...
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 5432 6899999999999999999988763
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=6.7e-23 Score=162.86 Aligned_cols=155 Identities=18% Similarity=0.135 Sum_probs=104.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCcccceeeeEEEEEEECCe
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLDSYISTIGVDFKIRTVEQDGK 50 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 50 (198)
..++|+++|.+++|||||+++|+... ...+..++.+.+.....+..++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 35899999999999999999995421 1112223445555555555555
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC--
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKK-- 124 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~-- 124 (198)
..+.+|||||++.+.......+..+|++|+|+|+++... +....++...+......+.| +++++||+|+....
T Consensus 95 -~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 95 -KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred -eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchH
Confidence 689999999999998888889999999999999988532 11001111112111223567 89999999985421
Q ss_pred c----CCHHHHHHHHHHhC------CcEEEEeccCCCCHHHHHH
Q 043946 125 V----VSYETAKAFADEIG------IPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 125 ~----~~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~~~~ 158 (198)
+ ...+++..++...+ ++++++||++|.|++++++
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 11233444554544 4699999999999999766
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=1.5e-23 Score=166.91 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TSSYY 73 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 73 (198)
.++|+++|++|||||||+|+|.+... .....++.+.+.....+.+++ ..+.+|||||...+... ...++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 47899999999999999999987532 223345555555555666777 67899999997654332 23367
Q ss_pred cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 74 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
..+|++++|+|++++.+... ..|+..+ . +.|+++|+||+|+....... ....+. ...+++++||++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV----K-HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH----T-TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc----c-CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence 88999999999998765433 3344333 1 36999999999997654332 111111 3468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 043946 154 EQAFMAMTADIKN 166 (198)
Q Consensus 154 ~~~~~~l~~~~~~ 166 (198)
++++++|.+.+..
T Consensus 372 ~eL~~~i~~~~~~ 384 (462)
T 3geh_A 372 DSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=2.8e-22 Score=157.94 Aligned_cols=161 Identities=16% Similarity=0.208 Sum_probs=111.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEE----------------EEEEE---CCeEEEEEEEeCCCc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKI----------------RTVEQ---DGKTVKLQIWDTAGQ 62 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~----------------~~~~~---~~~~~~~~i~D~~g~ 62 (198)
..++|+++|.+++|||||+++|.+.......... ..+... ..... ......+.+||+||+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 4689999999999999999999874332211000 000000 00000 112368999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHHHHHh--
Q 043946 63 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAFADEI-- 138 (198)
Q Consensus 63 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~-- 138 (198)
+.+.......+..+|++|+|+|++++.++.....++..+.... ..|+++++||+|+.+.... ..+++.++....
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCC
Confidence 9999889999999999999999998765666666766665543 2589999999999754321 112222222222
Q ss_pred -CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 139 -GIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 139 -~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
+++++++||++|.|+++++++|.+.+.
T Consensus 164 ~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 468999999999999999999987653
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=3.8e-22 Score=154.69 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=110.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccccCc
Q 043946 6 LLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER---------FRTITSSYYRGA 76 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~ 76 (198)
|+++|++|||||||+|+|.+........+..+.+.....+.+++ ..+.+|||+|.-. +... ...+..+
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~a 258 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKYS 258 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGGS
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHhC
Confidence 89999999999999999998765433344444455667777887 5689999999621 2221 2247889
Q ss_pred cEEEEEEECCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-CHHHHHHHHHHh---CCcEEEEeccCC
Q 043946 77 HGIIIVYDVTDQE--SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-SYETAKAFADEI---GIPFMETSAKDS 150 (198)
Q Consensus 77 d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~S~~~~ 150 (198)
|++++|+|++++. ....+..|...+......+.|+++|+||+|+...... ..+.+..++... +.+++++|++++
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 9999999999876 5556666776666655457899999999998653210 011233334554 236899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 043946 151 LNVEQAFMAMTADIKNR 167 (198)
Q Consensus 151 ~~i~~~~~~l~~~~~~~ 167 (198)
.|+++++++|.+.+...
T Consensus 339 ~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQL 355 (364)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccc
Confidence 99999999999877653
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=4.5e-25 Score=177.86 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=114.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+.++|+++|++++|||||+++|.+..+.....++.+.+.....+..++. ..+.+|||||++.+..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 5689999999999999999999876554444555554444444444221 468999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-CHHHHHHH---HHHh--CCcEEEEeccCCCCHHH
Q 043946 82 VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-SYETAKAF---ADEI--GIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~S~~~~~~i~~ 155 (198)
|+|++++..... ...+......+.|+++++||+|+.+.... ..+++..+ +..+ .++++++||++|.|+++
T Consensus 82 VVDa~dg~~~qt----~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e 157 (537)
T 3izy_P 82 VVAADDGVMKQT----VESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA 157 (537)
T ss_dssp ECBSSSCCCHHH----HHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred EEECCCCccHHH----HHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence 999998654332 33333333457899999999999753211 11222211 1111 24789999999999999
Q ss_pred HHHHHHHHHH
Q 043946 156 AFMAMTADIK 165 (198)
Q Consensus 156 ~~~~l~~~~~ 165 (198)
+|++|...+.
T Consensus 158 Lle~I~~l~~ 167 (537)
T 3izy_P 158 LAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhh
Confidence 9999987654
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.89 E-value=1.7e-22 Score=159.57 Aligned_cols=158 Identities=18% Similarity=0.251 Sum_probs=107.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCcccceee--eEEEEEEE-------------C--C----eEEEEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD---SYLDSYISTIGVD--FKIRTVEQ-------------D--G----KTVKLQIW 57 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~---~~~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~~~~i~ 57 (198)
..++|+++|+.++|||||+++|.+. ....+..+..+.. +....+.. + + ....+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 3589999999999999999999853 2333333433332 22222211 1 1 13689999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc--CCHHHH
Q 043946 58 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV--VSYETA 131 (198)
Q Consensus 58 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~ 131 (198)
|+||++.+.......+..+|++|+|+|++++ ++..++. .+.... ..|+++++||+|+.+... ...+++
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHHHHH
Confidence 9999999887777788899999999999964 3433332 232222 258999999999975431 122344
Q ss_pred HHHHHH---hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 132 KAFADE---IGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 132 ~~~~~~---~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
.+++.. .+++++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 444443 3578999999999999999999887554
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=6.8e-23 Score=164.80 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=98.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--C-----------------------------CCCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--Y-----------------------------LDSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.+||+++|.+++|||||+++|+... + ..+..+..+.+.....+...+
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-- 110 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-- 110 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC--
Confidence 5899999999999999999997531 1 111122333333444444444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN------VKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
..+.||||||++.+......++..+|++|+|+|++++.+... .......+... . ..|+++|+||+|+.+.+.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGGTTCH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcccchH
Confidence 789999999999999889999999999999999998643221 12222222222 1 246999999999976433
Q ss_pred CCHHHH----HHHHHHh-----CCcEEEEeccCCCCHHHH
Q 043946 126 VSYETA----KAFADEI-----GIPFMETSAKDSLNVEQA 156 (198)
Q Consensus 126 ~~~~~~----~~~~~~~-----~~~~~~~S~~~~~~i~~~ 156 (198)
...+++ ..++... +++++++||++|.|++++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 333333 3333333 357899999999999853
No 148
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=6.2e-22 Score=157.53 Aligned_cols=160 Identities=24% Similarity=0.254 Sum_probs=106.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTIT----------- 69 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 69 (198)
..++|+++|++|||||||+|+|.+.... ....++.+.+.....+.+++. .+.+|||+|........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 3589999999999999999999976531 223334444444456677774 67899999974332111
Q ss_pred -cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHH-HHHH----hCCcEE
Q 043946 70 -SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKA-FADE----IGIPFM 143 (198)
Q Consensus 70 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~ 143 (198)
..++..+|++++|+|+.++.+.... .+...+.. .+.|+++|+||+|+.+.+....++..+ +... .+++++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2356778999999999876554332 22222322 368999999999997654434444332 2222 247899
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHh
Q 043946 144 ETSAKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 144 ~~S~~~~~~i~~~~~~l~~~~~~~ 167 (198)
++||++|.|++++|+.+.+.+.+.
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999877654
No 149
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=6.2e-22 Score=150.22 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=106.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE---------RFRTITSSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 72 (198)
..+|+|+|++|||||||+|+|++..... ...+..+.......+..++ .++.+|||||.. .+......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 3579999999999999999999875421 1222222222222344444 689999999986 233445678
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCC
Q 043946 73 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSL 151 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~ 151 (198)
+..+|++++|+|+++ -+ ....++- ......+.|+++++||+|+........+.+..+...++. .++++||+++.
T Consensus 86 l~~~D~vl~Vvd~~~-~~--~~~~~i~--~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~ 160 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WT--PDDEMVL--NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL 160 (301)
T ss_dssp CCCEEEEEEEEETTC-CC--HHHHHHH--HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred HhcCCEEEEEEeCCC-CC--HHHHHHH--HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence 899999999999976 22 1222221 122234689999999999865222223444555555565 68999999999
Q ss_pred CHHHHHHHHHHHHH
Q 043946 152 NVEQAFMAMTADIK 165 (198)
Q Consensus 152 ~i~~~~~~l~~~~~ 165 (198)
|+++++++|.+.+.
T Consensus 161 ~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 161 NVDTIAAIVRKHLP 174 (301)
T ss_dssp THHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999887653
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=2.1e-22 Score=162.78 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=84.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC------------------CC----CCcccceeeeEEEEEEECCeEEEEEEEeC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY------------------LD----SYISTIGVDFKIRTVEQDGKTVKLQIWDT 59 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 59 (198)
...+|+|+|.+|+|||||+++|+.... .. ...++.+.......+.+.+ +.+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence 357899999999999999999962110 00 0012223334445556666 78999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 60 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 60 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
||+.++...+..++..+|++|+|+|++++........|. .+. ..++|+++|+||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~---~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR---LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH---TTTCCEEEEEECTTSCCS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH---HcCCCEEEEEeCCCCccc
Confidence 999999988999999999999999999876655544443 222 337899999999999643
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.88 E-value=7.6e-23 Score=153.44 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=91.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CC-------cccceeeeEEEEEEECCeEEEEEEEeCCCcccc-------c
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLD-SY-------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-------R 66 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~ 66 (198)
..++|+|+|.+|+|||||+|+|.+..... .+ .++.+.+.....+..++..+.+.+|||||.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999987654332 22 445555555555555665579999999996321 1
Q ss_pred ccc-------cccc-------------cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC
Q 043946 67 TIT-------SSYY-------------RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV 126 (198)
Q Consensus 67 ~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 126 (198)
.+. ..++ .++|+++++++.........-..++..+ .. ++|+++|+||+|+......
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l---~~-~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL---HE-KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH---TT-TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH---hc-cCCEEEEEeccCCCCHHHH
Confidence 111 1122 3478999999876522111112333333 22 6899999999998643221
Q ss_pred C--HHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 127 S--YETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 127 ~--~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
. .+.+.+.+...+++++++|+.++.|+++++++|.+.+
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 1 2345556667789999999999999999999887643
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.7e-23 Score=162.40 Aligned_cols=164 Identities=22% Similarity=0.320 Sum_probs=89.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCc--------ccceeeeEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSY-LDSYI--------STIGVDFKIRTVEQDGKTVKLQIWDTAGQ-------ERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 65 (198)
..++|+|+|++|+|||||+++|.+... ...+. ++.+.......+...+....+.+|||||. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 468999999999999999999875432 22221 33333333333444566678999999998 555
Q ss_pred ccccc-------ccccCc-------------cEEEEEEECCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 66 RTITS-------SYYRGA-------------HGIIIVYDVTDQESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 66 ~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
..++. .++..+ |+++|+++.. ..++..+. .++..+ ..++|+|+|+||+|+...+
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHH
Confidence 54443 444332 3455555542 23333332 233322 3578999999999997654
Q ss_pred cCCH--HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhhcC
Q 043946 125 VVSY--ETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMASQ 171 (198)
Q Consensus 125 ~~~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~~ 171 (198)
.+.. +++..++..++++++++||+++.+ ++.|.++.+.+.+..+..
T Consensus 191 ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~ 238 (361)
T 2qag_A 191 ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFS 238 (361)
T ss_dssp HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCE
T ss_pred HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCC
Confidence 3332 456666667789999999999999 999999999988766543
No 153
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=1.8e-21 Score=143.77 Aligned_cols=161 Identities=14% Similarity=0.127 Sum_probs=105.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCccc--ceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYIST--IGVDFKIRTVEQDGKTVKLQIWDTAGQE--------RFRTITSS 71 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 71 (198)
..++|+++|.+|||||||+|+|++........++ .+.......+..++ ..+.+|||||.. .+......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4689999999999999999999987665433333 23333445555666 679999999962 22222222
Q ss_pred c----ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCcC------CHHHHHHHHHHh
Q 043946 72 Y----YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---ENVNKLLVGNKCDLTDKKVV------SYETAKAFADEI 138 (198)
Q Consensus 72 ~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~ 138 (198)
+ ...+|++|+|+|+++... ....++..+..... .+.|+++++||.|+.+.... ..+.+..+...+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 3 389999999999985221 11222333333222 25799999999999653210 113467777888
Q ss_pred CCcEEEEeccC-----CCCHHHHHHHHHHHHHH
Q 043946 139 GIPFMETSAKD-----SLNVEQAFMAMTADIKN 166 (198)
Q Consensus 139 ~~~~~~~S~~~-----~~~i~~~~~~l~~~~~~ 166 (198)
+..+...+... +.|++++++.|.+.+.+
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 88887776654 57899999999888775
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=3e-23 Score=165.84 Aligned_cols=179 Identities=19% Similarity=0.179 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC--------ccccccccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG--------QERFRTITSSYYR 74 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~ 74 (198)
..+|+|+|.+|||||||+|+|.+.... ....+.+.+..............+.+||||| .+.+......++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 468999999999999999999986543 1222233333333333443346899999999 5566667778889
Q ss_pred CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCC-cEEEEeccCCCCH
Q 043946 75 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSLNV 153 (198)
Q Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~~~~i 153 (198)
.+|++|||+|..+...... ..+...+ ...+.|+++|+||+|+.+.. +...++. ..+. ..+++||.+|.|+
T Consensus 102 ~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv 172 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGL 172 (456)
T ss_dssp HCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTH
T ss_pred hCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccch
Confidence 9999999999876432211 1222222 23578999999999986432 1111111 2233 5689999999999
Q ss_pred HHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 154 EQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
.++++++.+.+... ..........++.+.+.+..+|++
T Consensus 173 ~~L~~~i~~~l~~~---~~~~~~~~~~ki~ivG~~~vGKSs 210 (456)
T 4dcu_A 173 GDLLDAVAEHFKNI---PETKYNEEVIQFCLIGRPNVGKSS 210 (456)
T ss_dssp HHHHHHHHTTGGGS---CSSCCCTTCEEEEEECSTTSSHHH
T ss_pred HHHHHHHHhhcccc---cccccccccceeEEecCCCCCHHH
Confidence 99999998766432 112233455677888888888875
No 155
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=8.3e-22 Score=151.96 Aligned_cols=125 Identities=23% Similarity=0.260 Sum_probs=101.4
Q ss_pred EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCCc
Q 043946 42 IRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SENVN 110 (198)
Q Consensus 42 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p 110 (198)
...+.+++ +.+.+||++|++.+...|..++++++++|||||+++ .+++.....|+..+.... ..+.|
T Consensus 185 ~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 185 ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred EEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 34455554 789999999999999999999999999999999998 456888888877765532 24799
Q ss_pred EEEEEeCCCCCCCC---------------cCCHHHHHHHHHH-----------hCCcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 111 KLLVGNKCDLTDKK---------------VVSYETAKAFADE-----------IGIPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 111 ~iiv~nK~D~~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
+++++||+|+.... .+..+++..++.. .++.++++||+++.||+++|+++.+.+
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999999985321 2567788777762 456889999999999999999999998
Q ss_pred HHhh
Q 043946 165 KNRM 168 (198)
Q Consensus 165 ~~~~ 168 (198)
.+..
T Consensus 343 ~~~~ 346 (353)
T 1cip_A 343 IKNN 346 (353)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 7644
No 156
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=1.4e-21 Score=159.84 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=106.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEEC-----------C-----eEEEEEEEeCCCcccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQD-----------G-----KTVKLQIWDTAGQERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~~~~~~i~D~~g~~~~ 65 (198)
+.++|+++|++++|||||+++|.+...........+.+.....+... + ....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46789999999999999999998654432211111111111111110 0 1125899999999999
Q ss_pred cccccccccCccEEEEEEECCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-------------CH-
Q 043946 66 RTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-------------SY- 128 (198)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-------------~~- 128 (198)
..++...+..+|++|+|+|+++ ++++..+.. +.. .+.|+++++||+|+...... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999998 555544332 222 36899999999998642110 00
Q ss_pred --H-------HHHHHHHHhC---------------CcEEEEeccCCCCHHHHHHHHHHHHHHhh
Q 043946 129 --E-------TAKAFADEIG---------------IPFMETSAKDSLNVEQAFMAMTADIKNRM 168 (198)
Q Consensus 129 --~-------~~~~~~~~~~---------------~~~~~~S~~~~~~i~~~~~~l~~~~~~~~ 168 (198)
+ ++.......+ ++++++||++|.|+++++++|...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 1111122222 37899999999999999999998776543
No 157
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.8e-22 Score=140.58 Aligned_cols=114 Identities=22% Similarity=0.359 Sum_probs=86.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCC---CcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC---
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDS---YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRG--- 75 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--- 75 (198)
..++|+|+|++|||||||+++|.+..+... ..++.+.+ + ....+.+||+||.+.+...+..++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y--DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C--CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e--cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 468999999999999999999998765431 11222111 1 23578999999999887777777765
Q ss_pred -ccEEEEEEECC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCC
Q 043946 76 -AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 76 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~iiv~nK~D~~~~~ 124 (198)
+|++|+|+|++ ++.++..+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 888998888887766543 23478999999999997654
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=8.8e-22 Score=154.76 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=106.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCC---------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS-------YLD---------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 66 (198)
.++|+++|++++|||||+++|.+.. +.. +.....+.+.....+... ...+.+||+||+++|.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA--ARHYAHTDCPGHADYV 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS--SCEEEEEECSSHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC--CeEEEEEECCChHHHH
Confidence 5899999999999999999998631 110 001222222222233333 3679999999999988
Q ss_pred ccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCc---CCHHHHHHHHHHhC---
Q 043946 67 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKV---VSYETAKAFADEIG--- 139 (198)
Q Consensus 67 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 139 (198)
.....++..+|++|+|+|+++.........| ..+.. .+.| +++++||+|+.+... ...+++.+++..++
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 8888889999999999999985433322333 33333 2678 689999999874221 11245566676665
Q ss_pred --CcEEEEeccCCCC----------HHHHHHHHHHHH
Q 043946 140 --IPFMETSAKDSLN----------VEQAFMAMTADI 164 (198)
Q Consensus 140 --~~~~~~S~~~~~~----------i~~~~~~l~~~~ 164 (198)
++++++||++|.| +.++++.|.+.+
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 777777776544
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.87 E-value=3.4e-22 Score=155.37 Aligned_cols=147 Identities=7% Similarity=0.072 Sum_probs=107.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD 84 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d 84 (198)
+|+++|.+++|||||+++|. ....+.+.....+..++ ..+.+|||||++++.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 22333334444454444 579999999999987777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCcCC--HHHHHHHHHHhC---CcEEE--EeccC---CCC
Q 043946 85 VTDQESFNNVKQWLNEIDRYASENVNK-LLVGN-KCDLTDKKVVS--YETAKAFADEIG---IPFME--TSAKD---SLN 152 (198)
Q Consensus 85 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~S~~~---~~~ 152 (198)
++ .......+++..+... +.|. ++++| |+|+ +..... .+++.+++...+ +++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 3334445555545443 5677 88899 9998 432211 134444444433 68999 99999 999
Q ss_pred HHHHHHHHHHHHHHh
Q 043946 153 VEQAFMAMTADIKNR 167 (198)
Q Consensus 153 i~~~~~~l~~~~~~~ 167 (198)
+++++++|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999887653
No 160
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.86 E-value=4.4e-24 Score=170.81 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=106.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIII 81 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~ 81 (198)
+..+|+++|++++|||||+++|....+.....++.+.+.....+..++ ..+.+|||||++.|..++...+..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 568999999999999999999986544333333333333333344444 478999999999999999999999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--cCCHH--HHHHHHHHhC--CcEEEEeccCCCC
Q 043946 82 VYDVTDQ---ESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK--VVSYE--TAKAFADEIG--IPFMETSAKDSLN 152 (198)
Q Consensus 82 v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~S~~~~~~ 152 (198)
|+|++++ ++...+ ..+ ...+.|+++++||+|+.+.. .+..+ +...+...++ ++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~---~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHA---KAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHH---HHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHH---HhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999884 333222 222 22368999999999997532 11100 0000112222 6899999999999
Q ss_pred HHHHHHHHHH
Q 043946 153 VEQAFMAMTA 162 (198)
Q Consensus 153 i~~~~~~l~~ 162 (198)
++++|++|..
T Consensus 154 I~eLle~I~~ 163 (501)
T 1zo1_I 154 IDELLDAILL 163 (501)
T ss_dssp CTTHHHHTTT
T ss_pred cchhhhhhhh
Confidence 9999999864
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.86 E-value=4.8e-22 Score=157.91 Aligned_cols=150 Identities=22% Similarity=0.213 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC--CCCCC----------c---------------------ccceeeeEEEEEEECC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS--YLDSY----------I---------------------STIGVDFKIRTVEQDG 49 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~----------~---------------------~~~~~~~~~~~~~~~~ 49 (198)
.++|+++|.+++|||||+++|+... +.... . ...+.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 5899999999999999999997542 11100 0 1122222333344444
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCCcC--
Q 043946 50 KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENV-NKLLVGNKCDLTDKKVV-- 126 (198)
Q Consensus 50 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~-- 126 (198)
..+.+|||||++.+......++..+|++|+|+|++++... ....++..+... +. |+++|+||+|+.+....
T Consensus 104 --~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 104 --RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp --EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred --ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 6799999999999988888889999999999999985432 223344333332 33 68999999999753211
Q ss_pred --CHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043946 127 --SYETAKAFADEIG-----IPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 127 --~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~~ 158 (198)
..+++..+++.++ ++++++||++|.|++++++
T Consensus 178 ~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 178 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1244555666666 6799999999999998544
No 162
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=9.6e-23 Score=161.94 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=103.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--CCCCCC-----------------------------cccceeeeEEEEEEECCe
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--SYLDSY-----------------------------ISTIGVDFKIRTVEQDGK 50 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 50 (198)
..++|+++|++++|||||+++|+.. .+.... .+..+.+.....+...+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 3589999999999999999999853 222110 12223333333344444
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHh----cCCCC-cEEEEEeCCCCCCCC-
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASENV-NKLLVGNKCDLTDKK- 124 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~-p~iiv~nK~D~~~~~- 124 (198)
..+.+|||||++++......++..+|++|+|+|+++ .++.....|.....++ ...+. |+++++||+|+.+..
T Consensus 84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 689999999999998888889999999999999998 5565433222221111 11233 689999999997521
Q ss_pred -----cCCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHHHH
Q 043946 125 -----VVSYETAKAFADEIG-----IPFMETSAKDSLNVEQAFM 158 (198)
Q Consensus 125 -----~~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~~~ 158 (198)
....+++..++..++ ++++++||++|.|+.++++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 112345666666666 6799999999999987654
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.86 E-value=1.5e-22 Score=161.95 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=91.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------------------------CCcccceeeeEEEEEEECCe
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD--DSYLD-----------------------------SYISTIGVDFKIRTVEQDGK 50 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 50 (198)
..++|+++|+.++|||||+++|+. +.+.. +.....+.+.....+..++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~- 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH- 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS-
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC-
Confidence 358999999999999999999974 21110 0011222223333444454
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC--
Q 043946 51 TVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKK-- 124 (198)
Q Consensus 51 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~-- 124 (198)
..+.+||+||++.|.......+..+|++|+|+|++++. +|....++...+......++| +++++||+|+.+..
T Consensus 121 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred -eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 68999999999999888888999999999999999863 222112222222222223677 99999999996421
Q ss_pred ----cCCHHHHHHHHHHh-C------CcEEEEeccCCCCHHHHH
Q 043946 125 ----VVSYETAKAFADEI-G------IPFMETSAKDSLNVEQAF 157 (198)
Q Consensus 125 ----~~~~~~~~~~~~~~-~------~~~~~~S~~~~~~i~~~~ 157 (198)
....+++..++... + ++++++||++|.|+.+++
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 01123455666665 3 569999999999998876
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=9.5e-22 Score=155.03 Aligned_cols=145 Identities=16% Similarity=0.130 Sum_probs=100.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--------CCCCC---------CcccceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--------SYLDS---------YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (198)
..++|+++|++++|||||+++|.+. .+... .....+.+.....+...+ ..+.+|||||+++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCChHH
Confidence 3589999999999999999999862 11110 012223333333333333 6799999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcC---CHHHHHHHHHHhC-
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVV---SYETAKAFADEIG- 139 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~- 139 (198)
+......++..+|++|+|+|++++... ....++..+... +.| +++++||+|+.+.... ..+++..++..++
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 988888889999999999999886432 334444444432 578 8899999999742211 1234556666665
Q ss_pred ----CcEEEEeccCCCC
Q 043946 140 ----IPFMETSAKDSLN 152 (198)
Q Consensus 140 ----~~~~~~S~~~~~~ 152 (198)
++++++||++|.|
T Consensus 164 ~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 164 PGDEVPVIRGSALLALE 180 (405)
T ss_dssp CTTTSCEEECCHHHHHH
T ss_pred cccCCCEEEccHHHhhh
Confidence 6899999999977
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.2e-22 Score=162.65 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=101.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC-------------------------------cccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSY-------------------------------ISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 51 (198)
.++|+++|.+|+|||||+++|++....-.. .++++.+.....+...+
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~-- 244 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR-- 244 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS--
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC--
Confidence 589999999999999999999864221110 12333333444444444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhh---HHHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCCCCcCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVS 127 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~~~ 127 (198)
..+.||||||++.+......++..+|++|+|+|++++.. +....++...+......+ .|+++|+||+|+.+.....
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 689999999999998888999999999999999987421 100112222222222223 4599999999997633222
Q ss_pred H----HHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043946 128 Y----ETAKAFADEIG-----IPFMETSAKDSLNVEQA 156 (198)
Q Consensus 128 ~----~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 156 (198)
. +++..++...+ ++++++||++|.|+.++
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2 23334444444 58999999999999977
No 166
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=8.2e-21 Score=144.52 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=99.9
Q ss_pred EEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCC
Q 043946 41 KIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SENV 109 (198)
Q Consensus 41 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~ 109 (198)
....+...+ +.+.+||++|++.+...|..++++++++|||||++ +.+++.....|+..+.... ..+.
T Consensus 158 ~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~ 235 (327)
T 3ohm_A 158 IEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNS 235 (327)
T ss_dssp EEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCc
Confidence 444555565 88999999999999999999999999999999765 5667777777776664432 2578
Q ss_pred cEEEEEeCCCCCCCC----------------cCCHHHHHHHHH----------HhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 110 NKLLVGNKCDLTDKK----------------VVSYETAKAFAD----------EIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 110 p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
|+++++||+|+.+.+ ....+++.+++. ..++.++++||+++.||+++|..+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999986432 356777777743 344678999999999999999999999
Q ss_pred HHHhhh
Q 043946 164 IKNRMA 169 (198)
Q Consensus 164 ~~~~~~ 169 (198)
+.+...
T Consensus 316 Il~~~l 321 (327)
T 3ohm_A 316 ILQLNL 321 (327)
T ss_dssp HHHTTC
T ss_pred HHHHhH
Confidence 987543
No 167
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=6.5e-22 Score=157.96 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------------------------CcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD--SYLDS-----------------------------YISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 51 (198)
.++|+++|.+++|||||+++|+.. .+... .....+.+.....+...+
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-- 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC--
Confidence 589999999999999999999853 12110 012223333333444444
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASENVN-KLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~ 124 (198)
..+.+|||||++.|......++..+|++|+|+|++++. +|. ....++..+.. .+.| +++++||+|+.+..
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~~~ 161 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVKWD 161 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGTTC
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccccCC
Confidence 68999999999999888888999999999999998753 121 12222222222 2455 89999999997421
Q ss_pred c----CCHHHHHHHHHHhC-----CcEEEEeccCCCCHHHH
Q 043946 125 V----VSYETAKAFADEIG-----IPFMETSAKDSLNVEQA 156 (198)
Q Consensus 125 ~----~~~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~~ 156 (198)
. ...+++..++..++ ++++++||++|.|+.++
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 11234555666665 68999999999999755
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=1.4e-21 Score=148.19 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=99.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------cccce--------------------eee---------------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSY------ISTIG--------------------VDF--------------- 40 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~--------------------~~~--------------- 40 (198)
..++|+|+|.+|||||||+|+|++..+.+.. .++.. .+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999987763211 12100 000
Q ss_pred ----------EEEEEEECCeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEECCChhhHHHHHH
Q 043946 41 ----------KIRTVEQDGKTVKLQIWDTAGQE-------------RFRTITSSYYRGAHGII-IVYDVTDQESFNNVKQ 96 (198)
Q Consensus 41 ----------~~~~~~~~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 96 (198)
....+... ....+.+|||||.. .+..+...++..++.+| +|+|+++.........
T Consensus 105 g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred ccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00000111 02579999999964 23345566778888776 7999987544333223
Q ss_pred HHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHh--C-CcEEEEeccCCCCHHHHHHHHHHHH
Q 043946 97 WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEI--G-IPFMETSAKDSLNVEQAFMAMTADI 164 (198)
Q Consensus 97 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~S~~~~~~i~~~~~~l~~~~ 164 (198)
+...+ ...+.|+++|+||+|+.+......+.+....... + .+++++||++|.|++++|++|.+..
T Consensus 184 ~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 33333 3357899999999999765432233222110011 2 3578899999999999999998744
No 169
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=4.3e-20 Score=141.06 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=97.0
Q ss_pred EEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-CCCC
Q 043946 41 KIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SENV 109 (198)
Q Consensus 41 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~ 109 (198)
....+.+.+ +.+.+||++|++.+...|..++++++++|||||++ +.+++.....|+..+.... ..+.
T Consensus 152 ~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~ 229 (340)
T 4fid_A 152 HEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGA 229 (340)
T ss_dssp EEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCC
Confidence 334444444 78999999999999999999999999999999998 6778888888777665442 2578
Q ss_pred cEEEEEeCCCCCCCC---------------cCCHHHHHHHHH-Hh--------------------------CCcEEEEec
Q 043946 110 NKLLVGNKCDLTDKK---------------VVSYETAKAFAD-EI--------------------------GIPFMETSA 147 (198)
Q Consensus 110 p~iiv~nK~D~~~~~---------------~~~~~~~~~~~~-~~--------------------------~~~~~~~S~ 147 (198)
|+++++||+|+.+.+ ....+++.+++. ++ .+.++++||
T Consensus 230 piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA 309 (340)
T 4fid_A 230 VKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA 309 (340)
T ss_dssp EEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred eEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence 999999999985311 123555554433 22 366899999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 043946 148 KDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 148 ~~~~~i~~~~~~l~~~~~~ 166 (198)
+++.+|+.+|..+.+.+.+
T Consensus 310 ~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 310 TDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred eCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999987
No 170
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.82 E-value=4.2e-22 Score=163.22 Aligned_cols=147 Identities=20% Similarity=0.238 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------------------------------CCCCCcccceeeeEEEEEEECCeE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS-------------------------------YLDSYISTIGVDFKIRTVEQDGKT 51 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (198)
.++|+++|++++|||||+++|+... ...+..++++.+.....+..+ .
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~--~ 254 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD--K 254 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC--C
Confidence 5799999999999999999996310 011112233333333334333 3
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~ 124 (198)
..+.||||||++.|.......+..+|++|+|+|++++. .+ ......+..+.. .++| +|+|+||+|+.+..
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGGTTC
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEecccccccc
Confidence 78999999999999888888999999999999998532 11 011122222222 2455 89999999987532
Q ss_pred cCCH----HHHHHHH-HHhCC-----cEEEEeccCCCCHH
Q 043946 125 VVSY----ETAKAFA-DEIGI-----PFMETSAKDSLNVE 154 (198)
Q Consensus 125 ~~~~----~~~~~~~-~~~~~-----~~~~~S~~~~~~i~ 154 (198)
.... +++..+. ...++ +++++||++|.|+.
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 1111 2233333 33344 69999999999998
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.82 E-value=1.8e-20 Score=134.94 Aligned_cols=155 Identities=15% Similarity=0.183 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER----------FRTITSSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~ 72 (198)
..+|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ .+.+||+||... +......+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 46899999999999999999997653333344444433333333333 478999999742 12222233
Q ss_pred c---cCccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHHHHHhC--CcEE
Q 043946 73 Y---RGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAFADEIG--IPFM 143 (198)
Q Consensus 73 ~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~ 143 (198)
+ ..++++++++|+.++.+.. .+..|+ . ..+.|+++++||+|+....+. ..+.+..++...+ +.++
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE 176 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHH---H---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence 3 5789999999998865432 222222 1 136899999999998643211 1234444444443 4678
Q ss_pred EEeccCCCCHHHHHHHHHHHHHH
Q 043946 144 ETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 144 ~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++|++++.|+++++++|.+.+.+
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEeecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999877643
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=5.6e-20 Score=157.36 Aligned_cols=158 Identities=17% Similarity=0.157 Sum_probs=104.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDS-------YLD-------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI 68 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 68 (198)
.++|+++|++++|||||+++|.+.. +.. ......+.+.....+.+......+.+|||||++++...
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~ 375 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKN 375 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHH
Confidence 5899999999999999999997531 000 00111222222122223333368999999999999888
Q ss_pred ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCcC---CHHHHHHHHHHhC-----
Q 043946 69 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKKVV---SYETAKAFADEIG----- 139 (198)
Q Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~---~~~~~~~~~~~~~----- 139 (198)
....+..+|++|+|+|++++.... ...++..+... ++| +++++||+|+.+.... ..+++..++..++
T Consensus 376 mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~ 451 (1289)
T 3avx_A 376 MITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDD 451 (1289)
T ss_dssp HHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccc
Confidence 888899999999999999853322 23344444333 578 7899999999753211 1245566666665
Q ss_pred CcEEEEeccCC--------CCHHHHHHHHHHHH
Q 043946 140 IPFMETSAKDS--------LNVEQAFMAMTADI 164 (198)
Q Consensus 140 ~~~~~~S~~~~--------~~i~~~~~~l~~~~ 164 (198)
++++++||++| .|+.+++++|.+.+
T Consensus 452 vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 452 TPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred eeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 58999999999 35777777765543
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3e-19 Score=133.05 Aligned_cols=123 Identities=18% Similarity=0.222 Sum_probs=85.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYR------ 74 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------ 74 (198)
..++|+++|.+|+|||||+++|.+.... ....+..+.......+..++ ..+.+|||||++++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 3689999999999999999999986642 22223333344455566666 68999999998877554444432
Q ss_pred ---CccEEEEEEECCChhhHHHH-HHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCcCC
Q 043946 75 ---GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASEN--VNKLLVGNKCDLTDKKVVS 127 (198)
Q Consensus 75 ---~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~iiv~nK~D~~~~~~~~ 127 (198)
.+|++++|++++... +... ..|+..+......+ .|+++|+||+|+...+...
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999987644 3222 45666666554433 4999999999996443333
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=7.2e-19 Score=142.32 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=79.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC--CCC--------------------CCcccceeeeEEEEEEECCeEEEEEEEeC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS--YLD--------------------SYISTIGVDFKIRTVEQDGKTVKLQIWDT 59 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 59 (198)
...+|+|+|++|+|||||+++|+... ... ......+.......+...+ +.+.+|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence 46899999999999999999998531 100 0011112222233444555 78999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 60 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 60 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
||+.++......++..+|++|+|+|++++.... ...++.. ....++|+++++||+|+...
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~---~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV---TRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH---HTTTTCCEEEEEECTTSCCS
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH---HHHcCCCEEEEEcCcCCccc
Confidence 999998888888999999999999998854321 1222222 23347899999999998643
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=2e-19 Score=141.33 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=110.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc----ccccc---ccccCcc
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF----RTITS---SYYRGAH 77 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~---~~~~~~d 77 (198)
.|+|+|++|||||||+++|.+........+..+.......+..++ ...+.+||+||.... ..+.. ..+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987532111111112222233344443 246889999996321 11212 2245799
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043946 78 GIIIVYDVTDQESFNNVKQWLNEIDRYAS--ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 155 (198)
.+++++|++ ..++..+..+...+..+.. ...|.++++||+|+... ...+++.+.....+..++.+||+++.|+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e 314 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA 314 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence 999999998 5667777777777665432 25799999999998643 223444455555678999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 043946 156 AFMAMTADIKNRMA 169 (198)
Q Consensus 156 ~~~~l~~~~~~~~~ 169 (198)
++++|.+.+.+...
T Consensus 315 L~~~i~~~l~~~~~ 328 (416)
T 1udx_A 315 LKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876443
No 176
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.80 E-value=4.5e-19 Score=147.73 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=82.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--CCC------C----------CCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--SYL------D----------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
+..+|+|+|.+|+|||||+++|+.. .+. . ......+.......+.+.+ +.+.+|||||+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 88 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGHV 88 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSST
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCcc
Confidence 4689999999999999999999831 110 0 0011222223334445555 789999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
.+...+..++..+|++|+|+|+++..+......|.. +.. .+.|+++|+||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 988888999999999999999998777665555543 322 3789999999999864
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=2.1e-19 Score=149.20 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=80.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------------------cccceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSY------------------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (198)
..+|+|+|+.|+|||||+++|++....... ....+.......+.... +.+++|||||+..
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~~~ 86 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGD 86 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCccc
Confidence 468999999999999999999842211000 01222223334444444 7899999999999
Q ss_pred ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 65 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 65 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
+......++..+|++++|+|+.+...... ..++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH---ccCCEEEEecCCchh
Confidence 98888899999999999999887544322 233333433 368999999999986
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=5.3e-19 Score=147.40 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=105.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccee------------ee----------------------------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGV------------DF---------------------------- 40 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~------------~~---------------------------- 40 (198)
..++|+|+|.+|+|||||+|+|++....+ ...+++.. +.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35899999999999999999999876433 22232210 00
Q ss_pred -------------EEEEEEECCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHH
Q 043946 41 -------------KIRTVEQDGKT--VKLQIWDTAGQER---FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEID 102 (198)
Q Consensus 41 -------------~~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 102 (198)
....+..+... ..+.+|||||... .......++..+|++|||+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 00001111100 2489999999654 33456678899999999999998777666655554442
Q ss_pred HhcCCCCcEEEEEeCCCCCCCCcCCH---H-------HHHHH----H-HH--------hCCcEEEEecc-----------
Q 043946 103 RYASENVNKLLVGNKCDLTDKKVVSY---E-------TAKAF----A-DE--------IGIPFMETSAK----------- 148 (198)
Q Consensus 103 ~~~~~~~p~iiv~nK~D~~~~~~~~~---~-------~~~~~----~-~~--------~~~~~~~~S~~----------- 148 (198)
. .+.|+++|+||+|+........ + .+... . .. ...+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 3678999999999864421111 1 12111 1 11 12368999999
Q ss_pred ---CCCCHHHHHHHHHHHHHH
Q 043946 149 ---DSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 149 ---~~~~i~~~~~~l~~~~~~ 166 (198)
++.|+++++++|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=4.8e-20 Score=143.25 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceee---e---------------------------------------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVD---F--------------------------------------- 40 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~---~--------------------------------------- 40 (198)
..+|+|+|.+|||||||+|+|.+..+.+......+.. .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999876533222211100 0
Q ss_pred ------------EEEEEEECCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEECCChhhHHHHH
Q 043946 41 ------------KIRTVEQDGKTVKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVK 95 (198)
Q Consensus 41 ------------~~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (198)
....+... ....+.+||+||...+ ..+...++..+|++|+|+|..+.+... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~-~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSP-NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEET-TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred hcCCCCCcccceEEEEEeCC-CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00001111 1135899999997765 445667889999999999876533211 3
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 96 QWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 96 ~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
.|+..+......+.|+++|+||+|+........+.+.......+.+|++++++++.++++.+.++...
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 44555555555678999999999997655444444444444556789999999998888776654433
No 180
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=1.3e-19 Score=141.97 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceee--eEEEEEE-------------------ECC-eEEEEEEEeCCC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVD--FKIRTVE-------------------QDG-KTVKLQIWDTAG 61 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~-------------------~~~-~~~~~~i~D~~g 61 (198)
++|+++|.+|||||||+|+|.+........+..+.+ .....+. +.+ ....+.+||+||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 589999999999999999999865322222222221 2211111 122 246899999999
Q ss_pred cccc----c---ccccccccCccEEEEEEECCCh
Q 043946 62 QERF----R---TITSSYYRGAHGIIIVYDVTDQ 88 (198)
Q Consensus 62 ~~~~----~---~~~~~~~~~~d~~i~v~d~~~~ 88 (198)
.... . ......++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7531 1 2223457899999999999875
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=4.6e-18 Score=127.14 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=80.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccccc-------c--
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITS-------S-- 71 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~-- 71 (198)
..++|+++|.+|+|||||+|+|++..+.. ...+..+.......+...+ ..+.+|||||..++..... .
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 36899999999999999999999866421 2222222233333444455 7899999999876543222 1
Q ss_pred cccCccEEEEEEECCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCc
Q 043946 72 YYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASEN--VNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~iiv~nK~D~~~~~~ 125 (198)
....+|+++||+|++.. ++.. -..|+..+......+ .|+++|+||+|+...+.
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 13479999999998753 2322 235666665554433 69999999999965443
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=3.6e-19 Score=135.85 Aligned_cols=112 Identities=19% Similarity=0.250 Sum_probs=69.8
Q ss_pred EEEEEEeCCCccc-------------ccccccccccCccEEEEEEECCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeC
Q 043946 52 VKLQIWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASENVNKLLVGNK 117 (198)
Q Consensus 52 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~iiv~nK 117 (198)
..+.+|||||... +......++..+|++++|+|+.+.... .....+ +......+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i---~~~~~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQL---AKEVDPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHH---HHHHCSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHH---HHHhCCCCCcEEEEEcC
Confidence 4699999999653 344566688999999999997432210 111122 22223347899999999
Q ss_pred CCCCCCCcCCHHHHHHHHHHhCCcEEEEec---cC---CCCHHHHHHHHHHHHHH
Q 043946 118 CDLTDKKVVSYETAKAFADEIGIPFMETSA---KD---SLNVEQAFMAMTADIKN 166 (198)
Q Consensus 118 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~---~~---~~~i~~~~~~l~~~~~~ 166 (198)
+|+........+.+.......+..++++|+ .+ +.|+.++++.+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 999765432233332111112255666654 44 78899999998877754
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=4.1e-20 Score=140.13 Aligned_cols=164 Identities=22% Similarity=0.309 Sum_probs=88.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC-CCCCCCc--------ccceeeeEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD-SYLDSYI--------STIGVDFKIRTVEQDGKTVKLQIWDTAGQ-------ERF 65 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~ 65 (198)
..++|+|+|++|||||||+++|.+. .++.... ++.........+...+....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999998764 3332221 11111111122223344468999999997 433
Q ss_pred ccccc-------cccc-------------CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 66 RTITS-------SYYR-------------GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 66 ~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
..+.. .++. .+++++|+.+++.. +++.+. ...+.... .+.|+++|+||.|+...++
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHHH
Confidence 33332 2222 23446666654321 122222 12333333 3579999999999875433
Q ss_pred C--CHHHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhhc
Q 043946 126 V--SYETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS 170 (198)
Q Consensus 126 ~--~~~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~ 170 (198)
+ ..+++.+++..++++++++||+++ +++++|.++.+.+.+..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 2 245677888899999999999999 9999999999998765543
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=4.4e-18 Score=141.88 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=83.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc--CCCCCC----------------CcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD--DSYLDS----------------YISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
+..+|+|+|.+|+|||||+++|+. ..+... ..+..+.......+.+.+ +.+.+|||||+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCc
Confidence 468999999999999999999984 222100 011222222334455555 789999999999
Q ss_pred cccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 64 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 64 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
++...+..++..+|++|+|+|++++.+......|.. +.. .+.|+++|+||+|+..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 988888889999999999999998766655555543 333 3689999999999864
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.1e-17 Score=139.66 Aligned_cols=117 Identities=16% Similarity=0.128 Sum_probs=81.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC--CCCCC-----------C-----cccceeeeEEEEEEEC-----CeEEEEEEEe
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD--SYLDS-----------Y-----ISTIGVDFKIRTVEQD-----GKTVKLQIWD 58 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~-----~~~~~~~i~D 58 (198)
+..+|+|+|..|+|||||+++|+.. .+... . ....+.......+.+. +..+.+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 4679999999999999999999742 11110 0 1112222222333333 2337899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 59 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
|||+.+|...+..++..+|++|+|+|+++.........|.. +. ..+.|+++++||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH---HcCCCEEEEEeCCCccc
Confidence 99999988888899999999999999998755444433432 22 23789999999999864
No 186
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.77 E-value=2.8e-18 Score=132.75 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=95.1
Q ss_pred EEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCC
Q 043946 41 KIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SENV 109 (198)
Q Consensus 41 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~ 109 (198)
....+.+++ +.+.+||++|++.+...|..++++++++|||+|+++ .+++.....|+..+.... ..+.
T Consensus 192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~ 269 (362)
T 1zcb_A 192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV 269 (362)
T ss_dssp EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence 345566665 889999999999999999999999999999999999 678888888887775532 2578
Q ss_pred cEEEEEeCCCCCCCC----------------cCCHHHHHHHHH-----------HhCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 110 NKLLVGNKCDLTDKK----------------VVSYETAKAFAD-----------EIGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 110 p~iiv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
|+++++||+|+.+.. .+..+++..++. ..++.++++||+++.||+++|+++.+
T Consensus 270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 999999999985321 256677776652 34567899999999999999999999
Q ss_pred HHHHhhh
Q 043946 163 DIKNRMA 169 (198)
Q Consensus 163 ~~~~~~~ 169 (198)
.+.+...
T Consensus 350 ~i~~~~l 356 (362)
T 1zcb_A 350 TILHDNL 356 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876543
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=135.90 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=79.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCC--------cccceeeeEEEEEEECCeEEEEEEEeCCCccccc-------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSY--------ISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFR------- 66 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------- 66 (198)
..++|+|+|++|||||||++.|.+....... .++.........+...+....+.+||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4678999999999999999999976542111 1111111111112223333578999999975431
Q ss_pred c------------------cccccccCccEEEEEEECCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC
Q 043946 67 T------------------ITSSYYRGAHGIIIVYDVTDQ-ESFNNVK-QWLNEIDRYASENVNKLLVGNKCDLTDKKVV 126 (198)
Q Consensus 67 ~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 126 (198)
. +...++.++++.+++|+.... .++.... .|+..+. .+.|+|+|+||+|+...+.+
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence 1 123345555544444444332 2333222 4554442 36899999999998754444
Q ss_pred CH--HHHHHHHHHhCCcEEEEeccCCCCHHHHHHHHHHH
Q 043946 127 SY--ETAKAFADEIGIPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 127 ~~--~~~~~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
.. +.+.+.+..++++++++|+.++.+++++|..|.+.
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 33 56777788889999999999999999887776654
No 188
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.75 E-value=4.5e-18 Score=131.12 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=97.1
Q ss_pred EEEEEECC----eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhhHHHHHHHHHHHHHhc-C
Q 043946 42 IRTVEQDG----KTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-S 106 (198)
Q Consensus 42 ~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~ 106 (198)
...+.+++ ..+.+.+||++|++.+...|..++++++++|||||++ +.+++.....|+..+.... .
T Consensus 169 e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 169 EIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp EEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred eEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 33444554 5689999999999999999999999999999999998 7788988888887776542 2
Q ss_pred CCCcEEEEEeCCCCCCCCc--C-------------------CHHHHHHHHHH----------------hCCcEEEEeccC
Q 043946 107 ENVNKLLVGNKCDLTDKKV--V-------------------SYETAKAFADE----------------IGIPFMETSAKD 149 (198)
Q Consensus 107 ~~~p~iiv~nK~D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~S~~~ 149 (198)
.+.|+++|+||+|+.+.+. + ..+++.+++.. ..+.++++||++
T Consensus 249 ~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d 328 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALD 328 (354)
T ss_dssp SSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTC
T ss_pred CCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeec
Confidence 5789999999999853211 1 13555555432 123468999999
Q ss_pred CCCHHHHHHHHHHHHHHhhh
Q 043946 150 SLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 150 ~~~i~~~~~~l~~~~~~~~~ 169 (198)
+.||+++|+++.+.+.+...
T Consensus 329 ~~nV~~vF~~v~~~I~~~~l 348 (354)
T 2xtz_A 329 QKLVKKTFKLVDETLRRRNL 348 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 99999999999998876544
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.75 E-value=2.5e-17 Score=133.87 Aligned_cols=114 Identities=15% Similarity=0.087 Sum_probs=83.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCC----------------------CCCCCcccceeeeEEEEEEECCeEEEEEEEeCCC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDS----------------------YLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAG 61 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 61 (198)
=+|+|+|+.++|||||..+|+... ...+....+++......+.+.+ +.++|+||||
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPG 109 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTPG 109 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCCC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCCC
Confidence 379999999999999999995210 1122334455555666777777 7899999999
Q ss_pred cccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 62 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
+.+|.....+.++.+|++|+|+|+...-.......|.. +.. .++|.++++||+|....
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchhc
Confidence 99999999999999999999999998655444444433 333 37999999999998643
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.75 E-value=7.5e-19 Score=133.25 Aligned_cols=133 Identities=19% Similarity=0.230 Sum_probs=106.6
Q ss_pred HHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-hHHHHH
Q 043946 18 CLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVK 95 (198)
Q Consensus 18 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 95 (198)
+|+.++..+.+. ..+.++++..+. ..+..++ .+.+||+ ++.+..++..++.++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577778877777 778888884443 3322222 6899999 8889999999999999999999999987 688888
Q ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhC--CcEEEEeccCCCCHHHHHHHHH
Q 043946 96 QWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 96 ~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
.|+..+.. .++|+++|+||+|+.+.+.+ +++.+++..++ ++++++||++|.|++++|+++.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 89887654 36899999999999654322 45667777777 8999999999999999999874
No 191
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.74 E-value=1.5e-17 Score=129.66 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=100.4
Q ss_pred EEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhhHHHHHHHHHHHHHhc-CCCC
Q 043946 41 KIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SENV 109 (198)
Q Consensus 41 ~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~ 109 (198)
....+.+++ +.+.+||++|++.+...|..++++++++|||||+++ .+++..+..|+..+.... ..+.
T Consensus 208 ~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~ 285 (402)
T 1azs_C 208 FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI 285 (402)
T ss_dssp EEEEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC
T ss_pred EEEEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC
Confidence 335566666 889999999999999999999999999999999999 889999999998876642 3578
Q ss_pred cEEEEEeCCCCCCCCc---C---------------------------CHHHHHHHH-----HH--------hCCcEEEEe
Q 043946 110 NKLLVGNKCDLTDKKV---V---------------------------SYETAKAFA-----DE--------IGIPFMETS 146 (198)
Q Consensus 110 p~iiv~nK~D~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~S 146 (198)
|+++|+||+|+...+. + ..+++..++ .. ..+.++++|
T Consensus 286 piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TS 365 (402)
T 1azs_C 286 SVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTC 365 (402)
T ss_dssp CEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECC
T ss_pred eEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEE
Confidence 9999999999853221 1 134455443 22 235678999
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhh
Q 043946 147 AKDSLNVEQAFMAMTADIKNRMA 169 (198)
Q Consensus 147 ~~~~~~i~~~~~~l~~~~~~~~~ 169 (198)
|+++.||+++|.++.+.+.+...
T Consensus 366 A~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 366 AVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876543
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.73 E-value=3.9e-18 Score=123.72 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=94.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeee--------------EEEEEEECC----------------eEE
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDF--------------KIRTVEQDG----------------KTV 52 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~ 52 (198)
..+|+++|.+|||||||+++|+..............+. ....+..++ ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 46899999999999999999986421111111111000 111111110 124
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHH
Q 043946 53 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAK 132 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 132 (198)
.+.+||++|.-.... .+....+.+++|+|+...... ...+... . +.|+++|+||+|+........+++.
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~~ 178 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEI---F---RVADLIVINKVALAEAVGADVEKMK 178 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhh---h---hcCCEEEEecccCCcchhhHHHHHH
Confidence 678999988411111 111256889999998765321 1111111 1 4688999999998643333566666
Q ss_pred HHHHHh--CCcEEEEeccCCCCHHHHHHHHHHHHHHh
Q 043946 133 AFADEI--GIPFMETSAKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 133 ~~~~~~--~~~~~~~S~~~~~~i~~~~~~l~~~~~~~ 167 (198)
..+... +++++++|+++|.|++++|++|.+.+...
T Consensus 179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 666654 36899999999999999999999887553
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.72 E-value=1.1e-16 Score=123.23 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=91.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGK---------------TVKLQIWDTAGQERFR- 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 66 (198)
.++|+++|.+|||||||+|+|.+........+..+.+.....+.+++. +..+.+||+||.....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 478999999999999999999986543222232222222223334432 1479999999976532
Q ss_pred ---cc---ccccccCccEEEEEEECCCh----------hhHHHHHHHHHHH-----------------------------
Q 043946 67 ---TI---TSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI----------------------------- 101 (198)
Q Consensus 67 ---~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------- 101 (198)
.+ ....++.+|++++|+|+++. +++..+..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 22 23357899999999999862 2333332211111
Q ss_pred -----------H-------------------Hh-cCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEeccC
Q 043946 102 -----------D-------------------RY-ASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD 149 (198)
Q Consensus 102 -----------~-------------------~~-~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~ 149 (198)
. .+ ....+|+++++|+.|.........+.+..++...+++++++||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 1 01 112489999999999642212235677788888899999999763
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=1e-17 Score=129.78 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=69.7
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC--HH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS--YE 129 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~--~~ 129 (198)
+.+.||||||... .....+..+|++++|+|+...+.+..+.. .-.+.|+++|+||+|+.+..... .+
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5789999999432 23334588999999999876544321111 01236899999999986432111 11
Q ss_pred HHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 130 TAKAFADEI-------GIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 130 ~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++....... +.+++++||++|.|+++++++|.+.+..
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222222212 4789999999999999999999988765
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=9e-18 Score=130.09 Aligned_cols=156 Identities=19% Similarity=0.202 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCC------cccce--------------------eee----------------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSY------ISTIG--------------------VDF---------------- 40 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~--------------------~~~---------------- 40 (198)
.++|+|+|.+|||||||+|+|++..+.+.. .|+.. .+.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999987653221 11100 000
Q ss_pred ---------EEEEEEECCeEEEEEEEeCCCccc-------------ccccccccccCcc-EEEEEEECCChhhHHHHHHH
Q 043946 41 ---------KIRTVEQDGKTVKLQIWDTAGQER-------------FRTITSSYYRGAH-GIIIVYDVTDQESFNNVKQW 97 (198)
Q Consensus 41 ---------~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~ 97 (198)
....+... ....+.+|||||... +..+...++...+ ++++|+|++....-. .+
T Consensus 111 ~~~gi~~~~~~~~i~~~-~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~ 186 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA 186 (353)
T ss_dssp TTTCCCCCCEEEEEEET-TCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred cCCCcccCceEEEEecC-CCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence 00011111 125699999999532 2334555665555 555566665422211 12
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHH--HhC-CcEEEEeccCCCCHHHHHHHHHH
Q 043946 98 LNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFAD--EIG-IPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 98 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~--~~~-~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
...+......+.|+++|+||+|+.+......+.+..... ..+ ..++++||+++.|++++++++.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 223444444578999999999997543322222111000 112 24678999999999999999876
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.67 E-value=8.2e-18 Score=122.39 Aligned_cols=154 Identities=20% Similarity=0.249 Sum_probs=92.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeE------------EEEEEEC-CeE-----------------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFK------------IRTVEQD-GKT----------------- 51 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~----------------- 51 (198)
..++|+|+|.+|||||||+++|+...+...+.++...++. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3589999999999999999999876444333343332221 1111111 100
Q ss_pred --EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHH
Q 043946 52 --VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYE 129 (198)
Q Consensus 52 --~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~ 129 (198)
..+.++|++|.-.. ...+-...+..+.++|+....... ......+ +.|.++|+||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTI--EKHPGIM------KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTT--TTCHHHH------TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhH--hhhhhHh------hcCCEEEEeccccCchhHHHHH
Confidence 13455566552100 011112345566777753221100 0001111 4688999999998654334566
Q ss_pred HHHHHHHHh--CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 130 TAKAFADEI--GIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 130 ~~~~~~~~~--~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
++..++... +++++++||++|.|++++|++|.+.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 777776665 5789999999999999999999887764
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.66 E-value=1.5e-16 Score=135.12 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=83.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCC--CCC--------------CCcccceee--eEEEEEE------------ECCeE
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDS--YLD--------------SYISTIGVD--FKIRTVE------------QDGKT 51 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~--------------~~~~~~~~~--~~~~~~~------------~~~~~ 51 (198)
+..+|+|+|+.++|||||+++|+... ... +..+..+.. .....+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 46799999999999999999998531 100 011111211 2222222 13346
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 121 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 121 (198)
+.+.||||||+.+|...+..+++.+|++|+|+|+.++.++.....|.... ..+.|+++++||+|+.
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence 89999999999999999999999999999999999987776665555433 2368999999999986
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.65 E-value=4.6e-16 Score=120.47 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDG-------------------KTVKLQIWDTAGQER 64 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 64 (198)
++|+++|.+|||||||+|+|.+........+..+.........++. ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5899999999999999999986532212122111111111222221 235799999999765
Q ss_pred cc-------ccccccccCccEEEEEEECCCh----------hhHHHHHHHHHHH--------------------------
Q 043946 65 FR-------TITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEI-------------------------- 101 (198)
Q Consensus 65 ~~-------~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~-------------------------- 101 (198)
.. ......++.+|++++|+|+.+. +++..+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 1223357899999999999852 2222221111100
Q ss_pred -------------HH-------------------hc-CCCCcEEEEEeCCCCC--CC-CcCCHHHHHHHHHHhCCcEEEE
Q 043946 102 -------------DR-------------------YA-SENVNKLLVGNKCDLT--DK-KVVSYETAKAFADEIGIPFMET 145 (198)
Q Consensus 102 -------------~~-------------------~~-~~~~p~iiv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
.. +. ...+|+++++||.|.. +. .....+.++.+++..+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 00 00 1137999999999842 21 1233567788888889999999
Q ss_pred eccCCCCHHHHH
Q 043946 146 SAKDSLNVEQAF 157 (198)
Q Consensus 146 S~~~~~~i~~~~ 157 (198)
||+...++.++.
T Consensus 242 SAk~E~el~eL~ 253 (368)
T 2dby_A 242 SARLEAELAELS 253 (368)
T ss_dssp CHHHHHHHHTSC
T ss_pred echhHHHHHHhc
Confidence 998865555443
No 199
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.4e-15 Score=115.03 Aligned_cols=151 Identities=15% Similarity=0.107 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-------RTITSSYYRGA 76 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 76 (198)
.+|+++|.||||||||+|+|.+........+..+.+.....+.+++ .+++++|+||.-.- .......++.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 5899999999999999999998665445556667777777788888 67899999995321 11223456789
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHh--cCCCCcEEEEEeCCCCCC--------CCcCCHHHHHHHHHHhCCcEEEEe
Q 043946 77 HGIIIVYDVTDQESFNNVKQWLNEIDRY--ASENVNKLLVGNKCDLTD--------KKVVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~S 146 (198)
|++++|+|++++.. ........+... .....|.++++||.|... ......++++.+...+.+.--++-
T Consensus 151 d~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 151 NLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA 228 (376)
T ss_dssp SEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred CccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence 99999999998743 222222333322 123578899999999742 123456777777777766545555
Q ss_pred ccCCCCHHHHHH
Q 043946 147 AKDSLNVEQAFM 158 (198)
Q Consensus 147 ~~~~~~i~~~~~ 158 (198)
...+...+++.+
T Consensus 229 ~~~nv~eddl~d 240 (376)
T 4a9a_A 229 FRCDATVDDLID 240 (376)
T ss_dssp ECSCCCHHHHHH
T ss_pred ecccCCHHHHHH
Confidence 555666666554
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=2.5e-16 Score=128.10 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=77.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC---CCCcccceeeeEEEE----------------------E-----------
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL---DSYISTIGVDFKIRT----------------------V----------- 45 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------~----------- 45 (198)
..++|+|+|.+|+|||||+|+|++..+. ....+++........ +
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3579999999999999999999987653 222222211000000 0
Q ss_pred ---EECCe-EEEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc
Q 043946 46 ---EQDGK-TVKLQIWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN 110 (198)
Q Consensus 46 ---~~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 110 (198)
.+++. ...+.+|||||... +......++..+|++|+|+|+++.........++..+. ..+.|
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~---~~~~p 220 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR---GHEDK 220 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT---TCGGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH---hcCCC
Confidence 00000 02589999999764 33455567888999999999987543344455554443 33689
Q ss_pred EEEEEeCCCCCCC
Q 043946 111 KLLVGNKCDLTDK 123 (198)
Q Consensus 111 ~iiv~nK~D~~~~ 123 (198)
+++|+||+|+...
T Consensus 221 vilVlNK~Dl~~~ 233 (550)
T 2qpt_A 221 IRVVLNKADMVET 233 (550)
T ss_dssp EEEEEECGGGSCH
T ss_pred EEEEEECCCccCH
Confidence 9999999998653
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.63 E-value=5.5e-17 Score=134.20 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=81.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc--CCCCC----------------CCcccceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD--DSYLD----------------SYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERF 65 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 65 (198)
-+|+|+|+.++|||||..+|+. +.... +....+++......+.+.+ +.++|+||||+.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence 3689999999999999999962 21111 0011233333444455555 78999999999999
Q ss_pred cccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 66 RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
.......++.+|++|+|+|+...-.......|.. +... ++|.++++||+|...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc---CCCeEEEEecccccc
Confidence 9999999999999999999998644333333333 3333 689999999999864
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=114.72 Aligned_cols=103 Identities=10% Similarity=0.070 Sum_probs=62.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETA 131 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 131 (198)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 56899999995321 2334678999999999987543221111 11 14688999999998532110 0112
Q ss_pred HHHHH----------HhCCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 132 KAFAD----------EIGIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 132 ~~~~~----------~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
..+.. .+..+++.+|+++|.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 22221 124578999999999999999999887643
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.61 E-value=1e-14 Score=122.17 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC--------CC----------CCCCcccceeeeEEEEEEECC-----eEEEEEEEeCC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD--------SY----------LDSYISTIGVDFKIRTVEQDG-----KTVKLQIWDTA 60 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~D~~ 60 (198)
=+|+|+|+.++|||||..+|+.. +. ..+....+++.....++.+.+ ..+.++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 37999999999999999998621 11 112223334444445555532 35889999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 043946 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 122 (198)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 122 (198)
|+.+|.......++.+|++|+|+|+...-......-|...... ++|.++++||+|...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999999999999999999999986554444444443322 789999999999853
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.59 E-value=9.9e-16 Score=118.04 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=65.1
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCH--H
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSY--E 129 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~--~ 129 (198)
+.+.+|||||...... .....+|++++|+|++..+.+..+.. . . .+.|.++|+||+|+.+...... +
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~--~-~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK--G-L-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH--H-H-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH--h-h-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 5799999999654322 24588999999999976543211111 0 0 1358899999999864321110 1
Q ss_pred HHHHHHHHh-------CCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 130 TAKAFADEI-------GIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 130 ~~~~~~~~~-------~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
++....... ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 222222222 346899999999999999999998765
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.58 E-value=1e-14 Score=108.27 Aligned_cols=112 Identities=14% Similarity=0.017 Sum_probs=68.4
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
+.+.+|||||......... ..+.. +++|+++|+........+.. +..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4789999999865433221 23456 89999998764322222111 1111111112258999999999986432
Q ss_pred cCCHHHHHHH----------------------------HHHhC--CcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 125 VVSYETAKAF----------------------------ADEIG--IPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 125 ~~~~~~~~~~----------------------------~~~~~--~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
.. +++.++ +..++ ++++++||+++.|+++++++|.+.+..
T Consensus 188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 11 111111 23333 478999999999999999999887653
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.56 E-value=4.6e-15 Score=123.60 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCccccee-------------------------------------------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLD-SYISTIGV------------------------------------------- 38 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~------------------------------------------- 38 (198)
..+|+|+|.+++|||||+|+|++..+.+ .....+..
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 4689999999999999999999876522 11111000
Q ss_pred -------eeEEEEEEECCeEEEEEEEeCCCcccc-------------cccccccc-cCccEEEEEEECCChhhHHHHHHH
Q 043946 39 -------DFKIRTVEQDGKTVKLQIWDTAGQERF-------------RTITSSYY-RGAHGIIIVYDVTDQESFNNVKQW 97 (198)
Q Consensus 39 -------~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~ 97 (198)
......+..++. ..+.++||||.... ......++ ..+|++++|+|++.+..-.....+
T Consensus 131 ~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp STTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 001111111111 25789999995431 11222333 678999999999864322222222
Q ss_pred HHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH--hC-CcEEEEeccCCCCHHHHHHHHHHH
Q 043946 98 LNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADE--IG-IPFMETSAKDSLNVEQAFMAMTAD 163 (198)
Q Consensus 98 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~S~~~~~~i~~~~~~l~~~ 163 (198)
. ......+.|+++|+||+|+................. .+ .+++.+||++|.|++++++.|.+.
T Consensus 210 l---~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 210 A---KEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp H---HHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred H---HHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2 233345789999999999976543322211100000 12 246779999999999999998764
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=1.3e-13 Score=105.87 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=63.4
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETA 131 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 131 (198)
+.+.++||+|...-. ......+|.+++|+|+...+....+... +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 578999999964321 2234789999999998754321111111 11 235678889999743222112222
Q ss_pred HHHHHH----------hCCcEEEEeccCCCCHHHHHHHHHHHHH
Q 043946 132 KAFADE----------IGIPFMETSAKDSLNVEQAFMAMTADIK 165 (198)
Q Consensus 132 ~~~~~~----------~~~~~~~~S~~~~~~i~~~~~~l~~~~~ 165 (198)
..+... +..+++.+|++++.|++++++.|.+...
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 333221 1357899999999999999999988764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=2.6e-13 Score=102.81 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=77.6
Q ss_pred cccccccccccccCccEEEEEEECCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC-HHHHHHHHHHhC
Q 043946 62 QERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS-YETAKAFADEIG 139 (198)
Q Consensus 62 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-~~~~~~~~~~~~ 139 (198)
++.+..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 4556677788999999999999999986 78888888876654 378999999999996543212 344556667778
Q ss_pred CcEEEEeccCCCCHHHHHHHHH
Q 043946 140 IPFMETSAKDSLNVEQAFMAMT 161 (198)
Q Consensus 140 ~~~~~~S~~~~~~i~~~~~~l~ 161 (198)
.+++++||++|.|++++++.+.
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHhhcc
Confidence 8999999999999999998763
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=6.1e-12 Score=98.03 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=59.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCC-CCCCcccceeeeEEEEEEECCe---------------EEEEEEEeCCCccc--
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSY-LDSYISTIGVDFKIRTVEQDGK---------------TVKLQIWDTAGQER-- 64 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-- 64 (198)
..+|+++|++|||||||+|.|.+... .....|+.+.+...-.+.+.+. ...+.+||+||...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999998654 3344454444444445555541 13589999999542
Q ss_pred -----ccccccccccCccEEEEEEECCC
Q 043946 65 -----FRTITSSYYRGAHGIIIVYDVTD 87 (198)
Q Consensus 65 -----~~~~~~~~~~~~d~~i~v~d~~~ 87 (198)
+...+...++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234445688999999999863
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=97.80 Aligned_cols=105 Identities=8% Similarity=-0.029 Sum_probs=68.5
Q ss_pred CCcccccccccccccCccEEEEEEECCChhhHHHHHHH---HHHHHHhc-CCCCcEEEEEeCC-CCCCCCcCCHHHHHHH
Q 043946 60 AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW---LNEIDRYA-SENVNKLLVGNKC-DLTDKKVVSYETAKAF 134 (198)
Q Consensus 60 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~-~~~~p~iiv~nK~-D~~~~~~~~~~~~~~~ 134 (198)
+|++.+..+|..|+.++|++|||+|.+|++.+..-.++ ...+.... ..+.|++|++||. |++. ..+..++.+.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~ 187 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHE 187 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHH
Confidence 36778899999999999999999999987543322222 22222221 2478999999995 6754 3455555443
Q ss_pred HHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHH
Q 043946 135 ADEI----GIPFMETSAKDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 135 ~~~~----~~~~~~~S~~~~~~i~~~~~~l~~~~~~ 166 (198)
.... .-.+..|||++|+|+.|.++||.+.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 3221 2247899999999999999999877654
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=3.3e-13 Score=105.01 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=51.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGK---------------TVKLQIWDTAGQERFR- 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 66 (198)
.++|+++|.+|||||||+|+|.+........++.+.+.....+.+++. ...+.+||+||.....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 478999999999999999999987654444444444444444544432 2359999999976532
Q ss_pred ------ccccccccCccEEEEEEECCCh
Q 043946 67 ------TITSSYYRGAHGIIIVYDVTDQ 88 (198)
Q Consensus 67 ------~~~~~~~~~~d~~i~v~d~~~~ 88 (198)
..+..+++.+|++++|+|+.+.
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC---
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 2455678999999999998754
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=95.37 Aligned_cols=107 Identities=7% Similarity=-0.014 Sum_probs=73.7
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhhHH---HHHHHHHHHHHhc-CCCCcEEEEEeC-CCCCCCCcCCHHHHHH
Q 043946 59 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN---NVKQWLNEIDRYA-SENVNKLLVGNK-CDLTDKKVVSYETAKA 133 (198)
Q Consensus 59 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~~~~~-~~~~p~iiv~nK-~D~~~~~~~~~~~~~~ 133 (198)
.+|++.+...|..|+.++|++|||+|.+|++.+. ++.+....+.... ..+.|++|++|| .|++.. .+..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHH
Confidence 3567788999999999999999999999976433 2222223332221 347899999996 687543 45555544
Q ss_pred HHHHh----CCcEEEEeccCCCCHHHHHHHHHHHHHHh
Q 043946 134 FADEI----GIPFMETSAKDSLNVEQAFMAMTADIKNR 167 (198)
Q Consensus 134 ~~~~~----~~~~~~~S~~~~~~i~~~~~~l~~~~~~~ 167 (198)
..... .-.+..|||.+|+|+.|.++||.+.+..+
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 33221 12478999999999999999999887543
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.14 E-value=4e-11 Score=93.13 Aligned_cols=114 Identities=24% Similarity=0.313 Sum_probs=81.6
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHH----HHH
Q 043946 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKA----FAD 136 (198)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~----~~~ 136 (198)
..+.|......+.+.+|++++|+|+.++. ..|...+.+... +.|+++|+||+|+.... ...+.+.+ +++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35677788888889999999999999864 445555655544 68999999999996533 23344433 356
Q ss_pred HhCC---cEEEEeccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 137 EIGI---PFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 137 ~~~~---~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
..+. .++.+||++|.|+++++++|.+... ...+...+.++.+||+
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~-------------~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG-------------GKDVYVVGCTNVGKST 175 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT-------------TSCEEEEEBTTSSHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc-------------cceEEEecCCCCChhH
Confidence 6677 7899999999999999999876431 1234555666666553
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.14 E-value=4.3e-12 Score=98.65 Aligned_cols=140 Identities=14% Similarity=0.213 Sum_probs=83.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC------CCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------cc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD------SYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI-------TS 70 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 70 (198)
.+|+++|.+|+|||||+|+|.+. .......+ +++.....+.++. .+.++||||....... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 46999999999999999999865 22112222 2334444455543 2789999995432211 11
Q ss_pred ccc---cCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEec
Q 043946 71 SYY---RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 71 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
..+ ...+.+++++++.....+..+.. +......+.|+++++||.|....... ....+.+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 112 67899999999853211001111 11223346899999999998654432 33444566666766666666
Q ss_pred cCCCCH
Q 043946 148 KDSLNV 153 (198)
Q Consensus 148 ~~~~~i 153 (198)
.+..++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 654444
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.11 E-value=4.1e-12 Score=98.68 Aligned_cols=137 Identities=10% Similarity=0.114 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCC-----CCCcccceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYL-----DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTI--------TS 70 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 70 (198)
.+|+++|.+|+|||||+|+|.+.... .......+++.....+.+... +.++||||......+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 47999999999999999999864211 111122233334444544432 789999996432211 01
Q ss_pred c--cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHHhCCcEEEEecc
Q 043946 71 S--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAK 148 (198)
Q Consensus 71 ~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 148 (198)
. .....+.++++++.........+.. +......+.|+++++||.|....... ....+.+.+..+..+.+.++.
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~ 312 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTPE 312 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCHH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCchh
Confidence 1 1366788999998743211000000 11223346899999999998754422 334445556666655555544
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.07 E-value=5.6e-11 Score=89.07 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=84.0
Q ss_pred EEeCCCcc-cccccccccccCccEEEEEEECCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHH
Q 043946 56 IWDTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAK 132 (198)
Q Consensus 56 i~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 132 (198)
+-..||+. .........+.++|++++|+|+.++.+.. .+..++ .++|.++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34678875 33455667789999999999999987643 233322 368999999999996421 112223
Q ss_pred HHHHHhCCcEEEEeccCCCCHHHHHHHHHHHHHHhhhc-CcCCCCCCCCccccCCCCCCCCCC
Q 043946 133 AFADEIGIPFMETSAKDSLNVEQAFMAMTADIKNRMAS-QPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 133 ~~~~~~~~~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
.+.+..+.+++.+||.++.|++++++.+.+.+.+.... ......+.+..+-+.+.++.+||+
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSs 135 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKST 135 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHH
Confidence 34444578999999999999999999988877643221 111122344567778888888875
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.05 E-value=2.7e-10 Score=89.44 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCc----ccceeeeEEEEEEECCeEEEEEEEeCCCcccc--------------
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYI----STIGVDFKIRTVEQDGKTVKLQIWDTAGQERF-------------- 65 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------------- 65 (198)
++++|+|++|+|||||+|.|.+..+..... +..........+...+....+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 579999999999999999998764322111 11111111112222232346889999874321
Q ss_pred cccc----cc---------cccCc--cE-EEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCC--
Q 043946 66 RTIT----SS---------YYRGA--HG-IIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVS-- 127 (198)
Q Consensus 66 ~~~~----~~---------~~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-- 127 (198)
...+ .. ....+ |+ +.|+.|+..+-+... ...+.... .+.|+|+|+||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHHHHHH
Confidence 0000 00 11222 33 555666554322222 22233333 578999999999976432210
Q ss_pred HHHHHHHHHHhCCcEEEEec
Q 043946 128 YETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~S~ 147 (198)
.+.+.......+++++.+|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 11222222334566666664
No 218
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.03 E-value=9.8e-11 Score=91.02 Aligned_cols=114 Identities=21% Similarity=0.327 Sum_probs=81.4
Q ss_pred CcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHH----HH
Q 043946 61 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAF----AD 136 (198)
Q Consensus 61 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~----~~ 136 (198)
.++.|......++..++++++|+|+.++.+ .|...+.+... +.|+++|+||+|+.... ...+.+.++ ++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence 467788888888899999999999999763 34444444433 68999999999996542 233444433 45
Q ss_pred HhCC---cEEEEeccCCCCHHHHHHHHHHHHHHhhhcCcCCCCCCCCccccCCCCCCCCCC
Q 043946 137 EIGI---PFMETSAKDSLNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKAS 194 (198)
Q Consensus 137 ~~~~---~~~~~S~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (198)
..+. .++.+||++|.|++++++.|.+... ...+...+.++.+||+
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~-------------~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE-------------GGDVYVVGCTNVGKST 177 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT-------------TSCEEEECCTTSSHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhcc-------------cCcEEEEcCCCCchHH
Confidence 5566 6899999999999999999876541 1346667777777764
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.00 E-value=8e-10 Score=82.29 Aligned_cols=137 Identities=20% Similarity=0.151 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCc-------ccceeeeEEEEEEE--CCeEEEEEEEeCCCccccc-------
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYI-------STIGVDFKIRTVEQ--DGKTVKLQIWDTAGQERFR------- 66 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~------- 66 (198)
.++++|+|++|+|||||+|.|.+...+.... ...........+.. .+-...++++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999997532211100 00000011111111 1212367899999832100
Q ss_pred ---------------------ccccccccCccEEEEEEECCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 043946 67 ---------------------TITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK 124 (198)
Q Consensus 67 ---------------------~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 124 (198)
......+.++++.++++|... +-.... ...+...... .++++|++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEeccccCCHH
Confidence 001122345688899998542 211111 2223333333 8999999999976432
Q ss_pred cC--CHHHHHHHHHHhCCcEEE
Q 043946 125 VV--SYETAKAFADEIGIPFME 144 (198)
Q Consensus 125 ~~--~~~~~~~~~~~~~~~~~~ 144 (198)
+. ..+.+.+....+++.+++
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 21 123344455666776554
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.99 E-value=2.1e-10 Score=92.13 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=61.1
Q ss_pred EEEEEEeCCCcccccc-cc---ccc--ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRT-IT---SSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK-LLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~~~~ 124 (198)
+.+.|+||||...... .. ... ...+|.+++|+|+....... .....+... .|+ .+|+||+|.....
T Consensus 184 ~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~----~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 184 FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK----VDVASVIVTKLDGHAKG 256 (504)
T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH----HCCCCEEEECTTSCCCC
T ss_pred CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh----cCceEEEEeCCccccch
Confidence 5789999999653211 11 001 22789999999998754321 122223221 464 8899999986322
Q ss_pred cCCHHHHHHHHHHhCCcE------------------EEEeccCCCC-HHHHHHHHHHH
Q 043946 125 VVSYETAKAFADEIGIPF------------------METSAKDSLN-VEQAFMAMTAD 163 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~------------------~~~S~~~~~~-i~~~~~~l~~~ 163 (198)
..........+.++ ..+|+..|.| +.++++++.+.
T Consensus 257 ----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 257 ----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11222334555543 2358888988 99999988765
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.91 E-value=3e-08 Score=77.87 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccc-eee--eEEEEEEECCeEEEEEEEeCCCcccccc-----cccccccC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI-GVD--FKIRTVEQDGKTVKLQIWDTAGQERFRT-----ITSSYYRG 75 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~ 75 (198)
..++|+|++|||||||+|.+.+...+....... +.+ .....+.... ...+.+||++|...... +...-+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~-~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccc-cCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 478999999999999999998743221111111 100 0011111111 11478999998532111 11112333
Q ss_pred ccEEEEEEECC--ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-------CCcCCHHH----HHHHH----HHh
Q 043946 76 AHGIIIVYDVT--DQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD-------KKVVSYET----AKAFA----DEI 138 (198)
Q Consensus 76 ~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~-------~~~~~~~~----~~~~~----~~~ 138 (198)
.+..++ ++.. ..... .....+.. .+.|+++|.||.|+.- -+....++ +.++. .+.
T Consensus 149 ~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp CSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555 7776 33221 12222222 2679999999999731 11112232 33332 122
Q ss_pred C---CcEEEEec--cCCCCHHHHHHHHHHHHHH
Q 043946 139 G---IPFMETSA--KDSLNVEQAFMAMTADIKN 166 (198)
Q Consensus 139 ~---~~~~~~S~--~~~~~i~~~~~~l~~~~~~ 166 (198)
+ ..++.+|+ .++.|++++.+.|.+.+.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 2 25788999 5566799999999877643
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.70 E-value=1.6e-08 Score=75.67 Aligned_cols=57 Identities=28% Similarity=0.361 Sum_probs=35.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQE 63 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 63 (198)
..++|+++|.||||||||+|+|.+.... ....+ +++.....+..+. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP--GITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCC--CeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3578999999999999999999976532 22222 2222223333433 58899999964
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.64 E-value=1.1e-08 Score=75.80 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER 64 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 64 (198)
++++++|.+|+|||||+|+|.+..... ..+..+.+.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 589999999999999999999765422 122223333223333332 589999999654
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.59 E-value=3.1e-09 Score=78.79 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=61.2
Q ss_pred CCCccc-ccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHHHHHHHH
Q 043946 59 TAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADE 137 (198)
Q Consensus 59 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 137 (198)
.||+.. ........+.++|+++.|+|+.++.+.... . +. .. ++|.++|+||+|+.+.. ..+....+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 356542 223456678899999999999987653211 0 11 11 68999999999996531 12233344555
Q ss_pred hCCcEEEEeccCCCCHHHHHHHHHH
Q 043946 138 IGIPFMETSAKDSLNVEQAFMAMTA 162 (198)
Q Consensus 138 ~~~~~~~~S~~~~~~i~~~~~~l~~ 162 (198)
.+.++ .+|++++.|+++++++|.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999999887644
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.59 E-value=8.7e-08 Score=75.66 Aligned_cols=86 Identities=21% Similarity=0.110 Sum_probs=51.6
Q ss_pred EEEEEEeCCCcccccccc------cccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTIT------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
+.+.|+||+|........ .......|.+++|+|+........ ....+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~--- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSA--- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCcc---
Confidence 568899999953321110 011235789999999987543222 22223222 235678999999753
Q ss_pred CCHHHHHHHHHHhCCcEEEEec
Q 043946 126 VSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
....+.......+.|+..++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 234455566667888877765
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.56 E-value=7.7e-08 Score=76.10 Aligned_cols=83 Identities=20% Similarity=0.102 Sum_probs=48.2
Q ss_pred EEEEEEeCCCccccccc------ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRTI------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENV-N-KLLVGNKCDLTDK 123 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~D~~~~ 123 (198)
+.+.|+||||....... ....+..+|.+++|+|+...... ......+ .. .. | ..+|+||+|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~---~~-~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAF---KE-AVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHH---HT-TSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHH---hh-cccCCeEEEEeCCCCccc
Confidence 56899999996532111 01122368999999998765421 1122222 22 34 5 7889999997422
Q ss_pred CcCCHHHHHHHHHHhCCcEEEE
Q 043946 124 KVVSYETAKAFADEIGIPFMET 145 (198)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ 145 (198)
...+..+....+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 223334666677766554
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.40 E-value=3.9e-07 Score=74.53 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=38.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcCCCC-CCCcccceeeeEEEEEE--E-CCeEEEEEEEeCCCccc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVE--Q-DGKTVKLQIWDTAGQER 64 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~i~D~~g~~~ 64 (198)
..++|+|+|.+|+|||||+|+|.+.... .....+.+.+.....+. . ......+.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3578999999999999999999986532 11111112222222221 1 11225688999999654
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.37 E-value=1.4e-07 Score=71.21 Aligned_cols=89 Identities=12% Similarity=0.170 Sum_probs=60.0
Q ss_pred cccccccCccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC--CHHHHHHHHHHhCCcEEE
Q 043946 68 ITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV--SYETAKAFADEIGIPFME 144 (198)
Q Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~ 144 (198)
+....+.++|.+++|+|+.+|.. ...+..++... ...++|.++|+||+|+.+.... ..+...+.....+.+++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~---~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV---EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH---HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH---HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 34446788999999999997654 33333333222 2347899999999999754210 123444555566889999
Q ss_pred EeccCCCCHHHHHHH
Q 043946 145 TSAKDSLNVEQAFMA 159 (198)
Q Consensus 145 ~S~~~~~~i~~~~~~ 159 (198)
+|+.++.|++++++.
T Consensus 156 ~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 156 TSSKDQDSLADIIPH 170 (307)
T ss_dssp CCHHHHTTCTTTGGG
T ss_pred EecCCCCCHHHHHhh
Confidence 999999888766544
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.29 E-value=1.2e-07 Score=74.72 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=54.5
Q ss_pred EEEEEEeCCCccc--cccc----ccc--cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 043946 52 VKLQIWDTAGQER--FRTI----TSS--YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDK 123 (198)
Q Consensus 52 ~~~~i~D~~g~~~--~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 123 (198)
+.+.++||||... .... ... .....+.+++|+|+...+.... ....+... -.+..+|+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc-
Confidence 5678999999543 1111 110 1124589999999986543222 22333322 246788999999742
Q ss_pred CcCCHHHHHHHHHHhCCcEEEEeccCCCCH
Q 043946 124 KVVSYETAKAFADEIGIPFMETSAKDSLNV 153 (198)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 153 (198)
....+.......+.|+..++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 345556666678898877775 5554
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.23 E-value=2.3e-06 Score=64.49 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=56.0
Q ss_pred EEEEEEeCCCccc--ccc-ccc-----ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 043946 52 VKLQIWDTAGQER--FRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTD 122 (198)
Q Consensus 52 ~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~ 122 (198)
+.+.++||||... ... +.. .....+|.+++|+|+...... ......+.. ..| ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5689999999765 211 110 124468999999998754221 222222322 245 678899999642
Q ss_pred CCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043946 123 KKVVSYETAKAFADEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 155 (198)
....+..+....++++..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 24455667777888887776 5666654
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.19 E-value=2.3e-06 Score=70.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (198)
.|+|+|++|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999998753
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.04 E-value=1.5e-05 Score=61.45 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=54.3
Q ss_pred cccCccEEEEEEECCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC-CHHHHHHHHHHhCCcEEEEeccC
Q 043946 72 YYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV-SYETAKAFADEIGIPFMETSAKD 149 (198)
Q Consensus 72 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~S~~~ 149 (198)
...++|.+++|... +|.. ...+..++...... ++|.++|+||+|+.+.... ..++........+.+++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45788999987654 4543 33333443332222 6788999999999653210 01122333445678999999999
Q ss_pred CCCHHHHHHHH
Q 043946 150 SLNVEQAFMAM 160 (198)
Q Consensus 150 ~~~i~~~~~~l 160 (198)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999887643
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.92 E-value=3.6e-07 Score=73.23 Aligned_cols=112 Identities=12% Similarity=0.152 Sum_probs=62.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcCCCCCCCcccceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccc--------ccc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQER--FRTIT--------SSY 72 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~~ 72 (198)
.+.|+++|.+|+||||+.++|...-.. ...++.............+......+||..|.+. ....+ ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999998743110 1111111000000000011112346788888632 22222 456
Q ss_pred ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 73 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
+...++.++|+|.++. .......|+..+... +.+++++-..++
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~ 160 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV 160 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence 6667888999999986 445556666666554 345555544333
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.92 E-value=1.1e-05 Score=61.57 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=52.1
Q ss_pred EEEEEeCCCcccccccccc------cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcC
Q 043946 53 KLQIWDTAGQERFRTITSS------YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVV 126 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 126 (198)
.+.++|++|.......... ..-..|-.+++.|+..... +......+.... ....+++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~~~~~~~~~~---~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVEQARQFNEAV---KIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence 3567899986432211100 1123688999999765532 223333333221 23467889999632
Q ss_pred CHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043946 127 SYETAKAFADEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 155 (198)
....+.......+.++..++ +|+++++
T Consensus 283 ~~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 RGGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CCHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred chhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 23445567777888888777 6666543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.83 E-value=3.4e-05 Score=61.16 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.--|.|+|++++|||+|+|+|++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhh
Confidence 34589999999999999999985
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.72 E-value=2e-05 Score=55.66 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=56.0
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCcCCHH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SENVNKLLVGNKCDLTDKKVVSYE 129 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~ 129 (198)
+.+.++|+|+.. .......+..+|.+|+++..+... ..+....+.+.... ..+.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 568899999864 333455667799999999887544 56666666665543 235678999999995322 234
Q ss_pred HHHHHHHHhCCcEE
Q 043946 130 TAKAFADEIGIPFM 143 (198)
Q Consensus 130 ~~~~~~~~~~~~~~ 143 (198)
++.+..+.++.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 45555556665544
No 237
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.68 E-value=0.00029 Score=50.12 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=55.9
Q ss_pred EEEEEEeCCCc-ccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHH
Q 043946 52 VKLQIWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYET 130 (198)
Q Consensus 52 ~~~~i~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 130 (198)
+.+.++|+|+. ... .....+..+|.+|+++..+ ..++..+...++.+.... +.++.+|+|+.|..... ...+
T Consensus 68 yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGDE 140 (209)
T ss_dssp CSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHHH
T ss_pred CCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHHH
Confidence 56889999876 332 2345667899999999876 455666666666666543 46788999999964311 2345
Q ss_pred HHHHHHHhCCcEE
Q 043946 131 AKAFADEIGIPFM 143 (198)
Q Consensus 131 ~~~~~~~~~~~~~ 143 (198)
+.+..+.++.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 5555555665544
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.63 E-value=3e-05 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.807 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++++++|++|+|||||++.+.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.61 E-value=2e-05 Score=59.54 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|||||||+|.|.+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 5799999999999999999864
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.53 E-value=4.7e-05 Score=52.89 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-++|+|++|||||||++.|..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999975
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.46 E-value=9.9e-05 Score=56.85 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (198)
.++|+|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 47899999999999999999754
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.46 E-value=6.5e-05 Score=53.03 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|++|||||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999875
No 243
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.43 E-value=0.0017 Score=51.43 Aligned_cols=81 Identities=15% Similarity=0.104 Sum_probs=44.9
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 043946 52 VKLQIWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVN-KLLVGNKCDLTDKK 124 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~ 124 (198)
+.+.|+||||.-....... ..+...+.+++|+|+...... ......+.. ..+ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCccH
Confidence 5689999999543321111 123468899999998764332 122222322 233 34689999974321
Q ss_pred cCCHHHHHHHHHHhCCcEE
Q 043946 125 VVSYETAKAFADEIGIPFM 143 (198)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~ 143 (198)
..+..+....+.++.
T Consensus 257 ----g~~l~i~~~~~~Pi~ 271 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIK 271 (433)
T ss_dssp ----THHHHHHHHHCCCEE
T ss_pred ----HHHHHHHHHHCCCeE
Confidence 233345555666543
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.42 E-value=0.00035 Score=52.61 Aligned_cols=20 Identities=50% Similarity=0.743 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 043946 5 KLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~ 24 (198)
.++++|++|||||||+|.|.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999998
No 245
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.40 E-value=9e-05 Score=51.70 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.|+++|++|||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999864
No 246
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.38 E-value=8.6e-05 Score=51.78 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|++|||||||++.|.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999975
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.37 E-value=9.6e-05 Score=52.12 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4789999999999999999763
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.34 E-value=0.00012 Score=51.21 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
|+|+||+|||||||+++|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999975
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.34 E-value=0.00011 Score=51.81 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|+|++|||||||++.|..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999985
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.33 E-value=0.00011 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-++|+|++|||||||++.|.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999763
No 251
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.32 E-value=0.00011 Score=52.10 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++|+|++|||||||++.+.+.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998763
No 252
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.31 E-value=0.00012 Score=50.46 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 043946 6 LLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (198)
++++|++|||||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999754
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.31 E-value=0.00017 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
+..|++.|++||||||+.+.|..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35689999999999999999986
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.30 E-value=0.00012 Score=52.40 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|||||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999998763
No 255
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.29 E-value=0.00014 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|+|+|++|||||||++.|...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3789999999999999999864
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.26 E-value=0.00014 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|+|++|||||||++.|.+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.26 E-value=0.00016 Score=51.12 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|+|++||||||+++.|..
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999975
No 258
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.24 E-value=0.00017 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999853
No 259
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.24 E-value=0.00018 Score=51.12 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.24 E-value=0.00018 Score=49.14 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 043946 4 FKLLLIGDSGVGKSCLLLRF 23 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l 23 (198)
+-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 261
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.23 E-value=0.00019 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999853
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.20 E-value=0.00019 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+++|++||||||+.+.|..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 263
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.19 E-value=0.0002 Score=48.64 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998764
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.18 E-value=0.00021 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.18 E-value=0.00022 Score=49.71 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-++++|++||||||+++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.17 E-value=0.00021 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3689999999999999988863
No 267
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.17 E-value=0.00021 Score=50.43 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
..|+|+|++||||||+++.|...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998764
No 268
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.16 E-value=0.00025 Score=51.67 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 043946 4 FKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~ 24 (198)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999997
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.14 E-value=0.00024 Score=50.06 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|+|++||||||+++.|..
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.13 E-value=0.00025 Score=51.09 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|+.|||||||++.+.+-
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999988864
No 271
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.12 E-value=0.00027 Score=50.31 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.11 E-value=0.0003 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
+.|+|.|.+||||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 3689999999999999998864
No 273
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.10 E-value=0.0003 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|||||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998874
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00036 Score=48.51 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.09 E-value=0.00031 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 276
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.08 E-value=0.0003 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999875
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.08 E-value=0.00035 Score=49.18 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+++|++||||||+.+.|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998863
No 278
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.08 E-value=0.00031 Score=48.53 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..++|+|++|+|||||+++|..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999985
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.00028 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
+++++|++|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 478999999999999998875
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.07 E-value=0.00031 Score=51.85 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++|+|+.|||||||++.+.+-
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999988864
No 281
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.06 E-value=0.00031 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++|+|+.|||||||++.+.+-
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988864
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.06 E-value=0.00033 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|+|++|||||||++.|.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 283
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.06 E-value=0.00033 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|+.|||||||++.+.+-
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998864
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.06 E-value=0.00032 Score=48.16 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
-.|+++|++||||||+++.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 285
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00034 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|.|++||||||+.+.|..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 286
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.04 E-value=0.00037 Score=50.60 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 287
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.04 E-value=0.00045 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 288
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.04 E-value=0.00034 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|||||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3689999999999999998864
No 289
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.03 E-value=0.0004 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.02 E-value=0.00048 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 291
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.02 E-value=0.00036 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998864
No 292
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.02 E-value=0.00038 Score=49.85 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 293
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.02 E-value=0.00044 Score=52.03 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (198)
.++++|++|||||||+|.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 46899999999999999998643
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.01 E-value=0.00036 Score=49.14 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
-.|+|+|++||||||+.+.|..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999998864
No 295
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.01 E-value=0.00041 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 296
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00049 Score=50.14 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..++|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999863
No 297
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.01 E-value=0.00048 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+.|+|.|++||||||+.+.|..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 298
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.01 E-value=0.00038 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 3689999999999999988864
No 299
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.00 E-value=0.00042 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 300
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.00 E-value=0.0005 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 301
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00044 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 302
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.00 E-value=0.00044 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 303
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.99 E-value=0.00039 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|||||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998864
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.98 E-value=0.00038 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|++|||||||++.+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 479999999999999999875
No 305
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00054 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 306
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.98 E-value=0.00041 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999998864
No 307
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.97 E-value=0.00042 Score=50.70 Aligned_cols=22 Identities=50% Similarity=0.678 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3689999999999999988864
No 308
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.97 E-value=0.00032 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|+|||||++.+.+
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.97 E-value=0.00044 Score=50.65 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999874
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.97 E-value=0.00043 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|++|+|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 578999999999999998874
No 311
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.97 E-value=0.00051 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 312
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.96 E-value=0.00049 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.96 E-value=0.00049 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+.|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 314
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.96 E-value=0.00047 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 315
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.95 E-value=0.00049 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999998864
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.95 E-value=0.00047 Score=50.01 Aligned_cols=19 Identities=37% Similarity=0.739 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 043946 6 LLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (198)
++++|++|||||||++.+.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999999887
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.95 E-value=0.00043 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-|+|+|++|||||||++.|.+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 4689999999999999998875
No 318
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.94 E-value=0.00039 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998764
No 319
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.94 E-value=0.00053 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 320
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.93 E-value=0.00052 Score=51.09 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999988864
No 321
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.93 E-value=0.00028 Score=50.86 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=14.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC
Q 043946 5 KLLLIGDSGVGKSCLLLRFA-DD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~-~~ 26 (198)
-++|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998 53
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.92 E-value=0.00063 Score=48.03 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 323
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.92 E-value=0.00054 Score=50.79 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 324
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.91 E-value=0.00051 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|||||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999998864
No 325
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.91 E-value=0.00049 Score=49.27 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-++|+|++|||||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999863
No 326
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.00028 Score=48.62 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|++|||||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.89 E-value=0.00053 Score=50.70 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|||||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3689999999999999998764
No 328
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.89 E-value=0.00055 Score=47.02 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.88 E-value=0.00066 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..-|++.|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999964
No 330
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.87 E-value=0.00053 Score=49.06 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 331
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.85 E-value=0.00067 Score=48.41 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
-+.|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 332
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00067 Score=50.04 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998874
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.85 E-value=0.00053 Score=53.00 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
-+++|+|++|+|||||++.|.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 334
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.84 E-value=0.00076 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
..|+++|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999988653
No 335
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.82 E-value=0.00063 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999863
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.82 E-value=0.00096 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (198)
...|+|+|++||||||+++.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999998753
No 337
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.81 E-value=0.00074 Score=46.57 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|++.|++|+||||+.+.|..
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.81 E-value=0.00078 Score=46.22 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..+.|+|++|+|||||+++|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.81 E-value=0.00072 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999863
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.80 E-value=0.0009 Score=50.79 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
++-|+|+|++|||||||++.|..
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988853
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.80 E-value=0.00082 Score=47.19 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (198)
...|+|.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999998753
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.80 E-value=0.00081 Score=46.76 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 343
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.79 E-value=0.00084 Score=46.80 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 344
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.79 E-value=0.001 Score=46.74 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998863
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.79 E-value=0.00092 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+.|+|+|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 346
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.78 E-value=0.00073 Score=52.06 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 043946 6 LLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (198)
++++|++|||||||++.+.+-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999988743
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.77 E-value=0.00086 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.76 E-value=0.00056 Score=51.58 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|++|||||||++.+.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTT
T ss_pred EEEEECCCCchHHHHHHHHHc
Confidence 479999999999999988875
No 349
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.76 E-value=0.00083 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999988764
No 350
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.76 E-value=0.0009 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|++.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 351
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.76 E-value=0.00033 Score=49.63 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 352
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.76 E-value=0.00085 Score=48.01 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
|+|+|+|||||+|..+.|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988864
No 353
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.75 E-value=0.0012 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhcC
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (198)
....|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3567999999999999999998764
No 354
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.75 E-value=0.001 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|+.|||||||++.|.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.74 E-value=0.00075 Score=46.69 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988864
No 356
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.74 E-value=0.00078 Score=50.77 Aligned_cols=84 Identities=14% Similarity=0.078 Sum_probs=45.8
Q ss_pred EEEEEeCCCccccccc------------ccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 043946 53 KLQIWDTAGQERFRTI------------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 120 (198)
Q Consensus 53 ~~~i~D~~g~~~~~~~------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 120 (198)
.+.+.|++|....... -.......+.++++.|+....... .....+.... + ..++++||.|.
T Consensus 186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~--~-~t~iivTh~d~ 259 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL---EQAKKFHEAV--G-LTGVIVTKLDG 259 (304)
T ss_dssp SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH---HHHHHHHHHH--C-CSEEEEECTTS
T ss_pred CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH---HHHHHHHHHc--C-CcEEEEECCcc
Confidence 3568899985422110 112234567788899987654322 2222232221 2 34678899986
Q ss_pred CCCCcCCHHHHHHHHHHhCCcEEEEe
Q 043946 121 TDKKVVSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (198)
... ...+.......+.++..+.
T Consensus 260 ~a~----gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAK----GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCC----CTTHHHHHHHHCCCEEEEE
T ss_pred ccc----ccHHHHHHHHHCCCeEEEe
Confidence 422 2234456666788876665
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.00077 Score=51.94 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 358
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.73 E-value=0.00059 Score=45.84 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|+|||+|++.+.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.72 E-value=0.0011 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|+|++|||||||++.|..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
No 360
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.72 E-value=0.0012 Score=45.87 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 361
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.72 E-value=0.00087 Score=51.58 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 689999999999999998864
No 362
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.72 E-value=0.00096 Score=47.14 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35699999999999999999864
No 363
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.72 E-value=0.00097 Score=46.25 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+++|.+||||||+++.|..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998864
No 364
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.71 E-value=0.00091 Score=51.60 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++|+|++|||||||++.+.+-
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHhcC
Confidence 689999999999999988864
No 365
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.0018 Score=43.00 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999987764
No 366
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.71 E-value=0.00088 Score=48.91 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998863
No 367
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.70 E-value=0.00077 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+++|++||||||+.+.|..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 368
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.70 E-value=0.00093 Score=51.53 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHCC
Confidence 689999999999999998864
No 369
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.70 E-value=0.0012 Score=49.40 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~ 24 (198)
...|+|.|++|||||||++.|.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998875
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.70 E-value=0.0011 Score=46.96 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999874
No 371
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.69 E-value=0.00096 Score=51.49 Aligned_cols=21 Identities=48% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCchHHHHHHHHhcC
Confidence 689999999999999998864
No 372
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.68 E-value=0.00098 Score=51.74 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEcCCCchHHHHHHHHHcC
Confidence 689999999999999999864
No 373
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.0012 Score=48.49 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999874
No 374
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.67 E-value=0.00094 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-++++|++||||||+++.|.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998853
No 375
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.67 E-value=0.0013 Score=46.86 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999864
No 376
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.67 E-value=0.0011 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 377
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.66 E-value=0.0011 Score=45.60 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||+|++.+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 378
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.66 E-value=0.00096 Score=50.37 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|+|++|||||||++.|.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 379
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.65 E-value=0.0011 Score=51.43 Aligned_cols=21 Identities=43% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTS
T ss_pred EEEECCCCChHHHHHHHHHcC
Confidence 689999999999999998764
No 380
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.65 E-value=0.00099 Score=50.82 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|+|||||++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 381
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.65 E-value=0.001 Score=51.50 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 689999999999999998864
No 382
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.64 E-value=0.0016 Score=45.70 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..+.|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.64 E-value=0.001 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|+|||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999863
No 384
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.63 E-value=0.0013 Score=48.14 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 043946 4 FKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~ 24 (198)
..|+|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999887
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.60 E-value=0.001 Score=51.54 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|++|||||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999875
No 386
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.60 E-value=0.00079 Score=46.41 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 387
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.59 E-value=0.0009 Score=48.22 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
.-|+|.|+.||||||+++.|.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999988764
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.58 E-value=0.0014 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 389
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.58 E-value=0.00088 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTS
T ss_pred EEEECCCCccHHHHHHHHHcC
Confidence 689999999999999998864
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.57 E-value=0.0013 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 391
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.56 E-value=0.0017 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
+..|+++|.+||||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 392
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.54 E-value=0.0013 Score=48.72 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999998863
No 393
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.54 E-value=0.0013 Score=50.24 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|+|||||++.+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999875
No 394
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.54 E-value=0.0016 Score=50.27 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHH
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRF 23 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l 23 (198)
..+||+++|.++||||||++.+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4689999999999999999886
No 395
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.53 E-value=0.0014 Score=46.76 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|++|+|||||++.+..
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999874
No 396
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.51 E-value=0.0013 Score=51.75 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-++|+|++|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 3799999999999999998763
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.51 E-value=0.0018 Score=44.00 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 398
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.51 E-value=0.0017 Score=46.79 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHhc
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..++..|+|+|||||||+.+.|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 468999999999999999988853
No 399
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.51 E-value=0.0019 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+.|+|.|++||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998864
No 400
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.51 E-value=0.0014 Score=51.04 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|||||||++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 378999999999999998876
No 401
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.49 E-value=0.0015 Score=52.84 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|++|||||||++.+.+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999863
No 402
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.48 E-value=0.0017 Score=44.74 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
.+|+|+.|+|||||++.+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999853
No 403
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.47 E-value=0.0011 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-++|.|+.|||||||++.|.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999864
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.47 E-value=0.0019 Score=48.00 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~ 24 (198)
.+.|+|.|.+||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 405
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.47 E-value=0.0051 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=18.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~ 24 (198)
..-|.|+|+.++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3457799999999999999654
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0016 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+++|++||||||+++.|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 588999999999999998853
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.44 E-value=0.00088 Score=51.57 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|++|||||||++.+.+-
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 689999999999999998874
No 408
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.44 E-value=0.0017 Score=47.48 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.44 E-value=0.0017 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|++.|.+||||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.42 E-value=0.0023 Score=46.12 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-|+|.|++||||||+++.|..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 411
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0016 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+++|++||||||+.+.|..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.41 E-value=0.0017 Score=52.07 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=49.1
Q ss_pred EEEEEEeCCCccccccc-------ccc----c-ccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 52 VKLQIWDTAGQERFRTI-------TSS----Y-YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~-------~~~----~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
+.+.++||+|....... ... . ....+-++||+|+....... .....+.... + ...+++||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---~~ak~f~~~~--~-itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---SQAKLFHEAV--G-LTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---HHHHHHHHHT--C-CSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---HHHHHHHhhc--C-CCEEEEEcCC
Confidence 34778999996422110 011 1 12356789999987653221 2222233322 2 2356889999
Q ss_pred CCCCCcCCHHHHHHHHHHhCCcEEEEeccCCCCHHH
Q 043946 120 LTDKKVVSYETAKAFADEIGIPFMETSAKDSLNVEQ 155 (198)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~ 155 (198)
... ....+..+...++.++..+. +|.++++
T Consensus 450 ~ta----kgG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 450 GTA----KGGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp GCS----CCTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Ccc----cccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 531 23445667777788876643 4444443
No 413
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.41 E-value=0.0017 Score=48.56 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
++|+|++|+|||||++.+..
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 68999999999999998875
No 414
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0015 Score=52.07 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.|.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998753
No 415
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.39 E-value=0.0016 Score=44.62 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|.|++|+|||+|++.+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998864
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.37 E-value=0.002 Score=45.70 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999987
No 417
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.36 E-value=0.0021 Score=46.04 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
-.+++.|++|+|||+|++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998874
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.34 E-value=0.0021 Score=49.30 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
+++++|++|+|||||++.+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.33 E-value=0.0021 Score=46.28 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999999864
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.31 E-value=0.0023 Score=44.91 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
-.+++.|++|+|||+|++.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 421
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.26 E-value=0.002 Score=45.58 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888864
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.24 E-value=0.0024 Score=49.58 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999875
No 423
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.22 E-value=0.0029 Score=42.03 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999988754
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.21 E-value=0.0032 Score=42.18 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 043946 6 LLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (198)
.+|+|+.|+||||+++++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4799999999999999974
No 425
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.20 E-value=0.003 Score=44.47 Aligned_cols=23 Identities=43% Similarity=0.667 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhcC
Q 043946 4 FKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (198)
..|+|+|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999854
No 426
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.16 E-value=0.0028 Score=47.30 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
-.+++.|++|+|||++++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.0029 Score=46.86 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.+++.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999753
No 428
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.13 E-value=0.003 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-+++.|+||+|||+|++.+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3567889999999999999875
No 429
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.13 E-value=0.0031 Score=45.99 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||++++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999875
No 430
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0034 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|||||||++.+.+.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 431
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.12 E-value=0.0033 Score=44.82 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 432
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0039 Score=47.97 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHh
Q 043946 2 YLFKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~ 24 (198)
+.+||+++|..+|||||+++.+.
T Consensus 8 ~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 8 HIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred CceeEEEECCCCCcHHHHHHHHH
Confidence 46799999999999999998873
No 433
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0035 Score=44.11 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998874
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.10 E-value=0.0031 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.|++.|++|+|||+|++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999998863
No 435
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.09 E-value=0.0032 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-|+++|++||||||+.++|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999875
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.09 E-value=0.0034 Score=49.78 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
+++|+|++|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999998864
No 437
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.07 E-value=0.0032 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|+|++|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 368999999999999998853
No 438
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.04 E-value=0.0036 Score=46.34 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999998874
No 439
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.02 E-value=0.0038 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5799999999999999988763
No 440
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.98 E-value=0.0038 Score=46.81 Aligned_cols=85 Identities=15% Similarity=0.079 Sum_probs=47.1
Q ss_pred EEEEEEeCCCccccccc----cccccc--CccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCc
Q 043946 52 VKLQIWDTAGQERFRTI----TSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKV 125 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~ 125 (198)
..+.|+||+|....... ....+. ..+.+++|+|++.. ...+..+...+. ..+ ..-+++||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCC-CCEEEEeCCCcccc--
Confidence 46889999996543221 111222 36788999987643 223333332222 112 23456799997532
Q ss_pred CCHHHHHHHHHHhCCcEEEEe
Q 043946 126 VSYETAKAFADEIGIPFMETS 146 (198)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~S 146 (198)
...+.......++++..++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355566677787765544
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.95 E-value=0.0051 Score=43.16 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 442
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.95 E-value=0.0056 Score=46.41 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0057 Score=50.47 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 4789999999999999999864
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.0056 Score=49.81 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
++++|+.|||||||++.+.+.
T Consensus 28 ~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCcHHHHHHHHhcC
Confidence 689999999999999998864
No 445
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.92 E-value=0.0044 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988763
No 446
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0041 Score=49.02 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|++.|+||+|||+|++++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999985
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.91 E-value=0.0057 Score=44.09 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|+|++|+||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988864
No 448
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.90 E-value=0.0042 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-+++.|++|+|||+|++.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998875
No 449
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.0049 Score=44.39 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
++|.|++|+|||||+..+..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999877753
No 450
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.0045 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.|++.||||+|||+|++++.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 451
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.88 E-value=0.0047 Score=46.56 Aligned_cols=86 Identities=24% Similarity=0.229 Sum_probs=48.7
Q ss_pred EEEEEEeCCCccccccc-----------ccc-cccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 043946 52 VKLQIWDTAGQERFRTI-----------TSS-YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCD 119 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~-----------~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 119 (198)
+.+.++|+||....... ... .-...+.+++|+|+.... ..+.. ...+.... + ..-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence 35889999995322110 000 123478999999987432 22222 22232221 2 3356789999
Q ss_pred CCCCCcCCHHHHHHHHHHhCCcEEEEec
Q 043946 120 LTDKKVVSYETAKAFADEIGIPFMETSA 147 (198)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~ 147 (198)
... ....+.++....+.|+..++.
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence 632 234467777888988877654
No 452
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.87 E-value=0.0049 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|+|++|||||||...|..
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 589999999999999998864
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.87 E-value=0.005 Score=46.08 Aligned_cols=21 Identities=29% Similarity=0.646 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||++++.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987653
No 454
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.86 E-value=0.005 Score=47.61 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 043946 6 LLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (198)
.+|+|+.|+|||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4699999999999999975
No 455
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.83 E-value=0.0047 Score=47.48 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|.|++|+|||||++.+..
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 456
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.83 E-value=0.0063 Score=42.12 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
|+|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 457
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.82 E-value=0.0073 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|+.|+|||||++.+.+.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998764
No 458
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.82 E-value=0.0039 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988763
No 459
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.82 E-value=0.0048 Score=46.79 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.|++.|++|+|||+|++.+...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 5899999999999999999864
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.82 E-value=0.0058 Score=46.58 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|+|++|||||+|...|..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.81 E-value=0.007 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
..-|++.|..||||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999874
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.81 E-value=0.0041 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
...|+|.|.+||||||+++.|..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988864
No 463
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.005 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|++.||||+|||+|++++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999863
No 464
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.80 E-value=0.0056 Score=45.71 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||++++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 465
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0041 Score=47.53 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998865
No 466
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.79 E-value=0.0064 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~ 24 (198)
..+|+++|++|+||||+.+.|.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999998764
No 467
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.79 E-value=0.0056 Score=45.07 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhcC
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (198)
.-.+++.|++|+|||+|++.+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999998753
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.79 E-value=0.0051 Score=50.02 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|+|+.|||||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999864
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.78 E-value=0.006 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998743
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.77 E-value=0.0059 Score=46.08 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|+|++|||||+|...|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 478999999999999999974
No 471
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.77 E-value=0.0044 Score=51.08 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|+|||||++.+.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999998876
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.0052 Score=46.85 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 043946 6 LLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (198)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998753
No 473
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.75 E-value=0.0055 Score=45.89 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||++++.+..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999998865
No 474
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0056 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|++.||||+|||.|++++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 4899999999999999999863
No 475
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.70 E-value=0.0057 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-+.|+|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999864
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.70 E-value=0.0069 Score=41.61 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|++.|++|+||||+.-.|..+
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999863
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.70 E-value=0.0086 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (198)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 478
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.69 E-value=0.006 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 479
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.68 E-value=0.0038 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|+|||||++.+.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 478999999999999987765
No 480
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.66 E-value=0.006 Score=46.17 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.+++.|++|+|||+|++.+...
T Consensus 53 ~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998753
No 481
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.64 E-value=0.0072 Score=45.50 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-|+|+|++|||||+|...|..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478999999999999999874
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.63 E-value=0.0074 Score=42.96 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-|+|.|.+||||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999998853
No 483
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.60 E-value=0.005 Score=50.67 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++++|++|+|||||++.+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999987765
No 484
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.007 Score=49.95 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 043946 6 LLLIGDSGVGKSCLLLRFADDS 27 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (198)
++|+|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998743
No 485
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.0071 Score=46.05 Aligned_cols=20 Identities=30% Similarity=0.674 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 043946 6 LLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (198)
+++.|++|+|||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998875
No 486
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.55 E-value=0.13 Score=36.87 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=57.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCcCCHHHH
Q 043946 52 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETA 131 (198)
Q Consensus 52 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~ 131 (198)
+.+.++|+|+.-. ......+..+|.+|+++..+ ..++..+...++.+.........+.+|+|+.+.... ...+
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~--~~~~-- 191 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR--ITSD-- 191 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT--SCHH--
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC--CCHH--
Confidence 4588999987542 23445677899999999875 566677777777776554334568899999996432 2333
Q ss_pred HHHHHHhCCcEEEEe
Q 043946 132 KAFADEIGIPFMETS 146 (198)
Q Consensus 132 ~~~~~~~~~~~~~~S 146 (198)
.+.+.++.+++..-
T Consensus 192 -~~~~~~~~~v~~~i 205 (245)
T 3ea0_A 192 -EIEKVIGRPISKRI 205 (245)
T ss_dssp -HHHHHHTSCEEEEE
T ss_pred -HHHHHhCCCeEEEC
Confidence 34445677766543
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.53 E-value=0.0076 Score=46.28 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||+|++.+..
T Consensus 72 ~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 488
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.52 E-value=0.0078 Score=42.68 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+.|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999988854
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.51 E-value=0.006 Score=43.89 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-|+|.|.+||||||+++.|..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 490
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.51 E-value=0.0085 Score=42.25 Aligned_cols=19 Identities=47% Similarity=0.651 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 043946 6 LLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (198)
.+|+|+.|+||||+++++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999874
No 491
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.51 E-value=0.003 Score=46.33 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.+++.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999999875
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.48 E-value=0.0078 Score=46.29 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.|++.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998753
No 493
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.0077 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
-|++.|+||+|||+|++++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 5899999999999999999863
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.46 E-value=0.0057 Score=49.90 Aligned_cols=22 Identities=41% Similarity=0.597 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
-.|+|+|++|||||||++.|.+
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4689999999999999999875
No 495
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.42 E-value=0.0069 Score=46.59 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
.++|.|++|+|||+|++.+..
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 496
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.41 E-value=0.0095 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhc
Q 043946 4 FKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (198)
.-|+|.|.+||||||+++.|..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998863
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.41 E-value=0.0079 Score=49.01 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 043946 5 KLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (198)
-++++|++|+|||||++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998864
No 498
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.38 E-value=0.0048 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=16.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhc
Q 043946 3 LFKLLLIGDSGVGKSCLLLRFAD 25 (198)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (198)
.+-|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999988753
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.37 E-value=0.0088 Score=48.49 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 043946 6 LLLIGDSGVGKSCLLLRFA 24 (198)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (198)
++|+|++|||||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 500
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.35 E-value=0.0093 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 043946 5 KLLLIGDSGVGKSCLLLRFADD 26 (198)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (198)
.+++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
Done!