BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043947
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 286 bits (731), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 131/186 (70%), Positives = 153/186 (82%), Gaps = 2/186 (1%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
+PG+HDE+ IEFLGT GKPYTLQTNV+I GSGD IIGREM+ HLWFDPT+D+H+YAI
Sbjct: 91 YPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIY 150
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFV 120
W+P E+IF VDDVPIRRYPRKS ATFPLRP+WVYGS+WDASSWATE+GKYKADYRYQPFV
Sbjct: 151 WTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFV 210
Query: 121 ARYTDFKACGCTAYAPAWCRPVSVSPFHSGGLSRQQYWAMRWLQSHHLVYDYCRDQKRDH 180
+Y DFK CT A + C P SVSP+ G LS+QQ AM W+Q +++VY+YC D RDH
Sbjct: 211 GKYEDFKLGSCTVEAASSCNPASVSPY--GQLSQQQVAAMEWVQKNYMVYNYCDDPTRDH 268
Query: 181 FLTPEC 186
LTPEC
Sbjct: 269 TLTPEC 274
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 285 bits (730), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 131/186 (70%), Positives = 153/186 (82%), Gaps = 2/186 (1%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
+PG+HDE+ IEFLGT GKPYTLQTNV+I GSGD IIGRE++ HLWFDPT+D+H+YAI
Sbjct: 88 YPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWFDPTQDYHNYAIY 147
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFV 120
W+P E+IF VDDVPIRRYPRKS ATFPLRPMWVYGS+WDASSWATE+GKYKADYRYQPFV
Sbjct: 148 WTPSEIIFFVDDVPIRRYPRKSDATFPLRPMWVYGSVWDASSWATENGKYKADYRYQPFV 207
Query: 121 ARYTDFKACGCTAYAPAWCRPVSVSPFHSGGLSRQQYWAMRWLQSHHLVYDYCRDQKRDH 180
+Y DFK CT A + C P SVSP+ G LS+QQ AM W+Q +++VY+YC D RDH
Sbjct: 208 GKYEDFKLGSCTVEAASSCNPASVSPY--GQLSQQQVAAMEWVQKNYMVYNYCDDPTRDH 265
Query: 181 FLTPEC 186
LTPEC
Sbjct: 266 TLTPEC 271
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 275 bits (702), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 128/186 (68%), Positives = 150/186 (80%), Gaps = 7/186 (3%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
+PG+HDE+ IEFLGT GKPYTLQTNV+I GSGD REM+ HLWFDPT+D+H+YAI
Sbjct: 89 YPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD-----REMRIHLWFDPTQDYHNYAIY 143
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFV 120
W+P E+IF VDDVPIRRYPRKS ATFPLRP+WVYGS+WDASSWATE+GKYKADYRYQPFV
Sbjct: 144 WTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFV 203
Query: 121 ARYTDFKACGCTAYAPAWCRPVSVSPFHSGGLSRQQYWAMRWLQSHHLVYDYCRDQKRDH 180
+Y DFK CT A + C P SVSP+ G LS+QQ AM W+Q +++VY+YC D RDH
Sbjct: 204 GKYEDFKLGSCTVEAASSCNPASVSPY--GQLSQQQVAAMEWVQKNYMVYNYCDDPTRDH 261
Query: 181 FLTPEC 186
LTPEC
Sbjct: 262 TLTPEC 267
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 275 bits (702), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 128/186 (68%), Positives = 150/186 (80%), Gaps = 7/186 (3%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
+PG+HDE+ IEFLGT GKPYTLQTNV+I GSGD REM+ HLWFDPT+D+H+YAI
Sbjct: 112 YPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGD-----REMRIHLWFDPTQDYHNYAIY 166
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFV 120
W+P E+IF VDDVPIRRYPRKS ATFPLRP+WVYGS+WDASSWATE+GKYKADYRYQPFV
Sbjct: 167 WTPSEIIFFVDDVPIRRYPRKSDATFPLRPLWVYGSVWDASSWATENGKYKADYRYQPFV 226
Query: 121 ARYTDFKACGCTAYAPAWCRPVSVSPFHSGGLSRQQYWAMRWLQSHHLVYDYCRDQKRDH 180
+Y DFK CT A + C P SVSP+ G LS+QQ AM W+Q +++VY+YC D RDH
Sbjct: 227 GKYEDFKLGSCTVEAASSCNPASVSPY--GQLSQQQVAAMEWVQKNYMVYNYCDDPTRDH 284
Query: 181 FLTPEC 186
LTPEC
Sbjct: 285 TLTPEC 290
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 106/190 (55%), Gaps = 12/190 (6%)
Query: 4 RHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSP 63
HDE+ EFLG G+PY LQTNV+ G GD RE + +LWFDPTK+FH+Y++LW+
Sbjct: 88 EHDEIDFEFLGNRTGQPYILQTNVFTGGKGD-----REQRIYLWFDPTKEFHYYSVLWNM 142
Query: 64 KELIFLVDDVPIRRYP--RKSAATFPL-RPMWVYGSIWDASSWATEDGKYKADYRYQPFV 120
++FLVDDVPIR + + FP +PM +Y S+W+A WAT G K D+ PF+
Sbjct: 143 YMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFI 202
Query: 121 ARYTDFKACGCTAYAPA-WCRPVSV---SPFHSGGLSRQQYWAMRWLQSHHLVYDYCRDQ 176
A Y F GC A A +C L QY + W++ + +Y+YC D+
Sbjct: 203 ASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIYNYCTDR 262
Query: 177 KRDHFLTPEC 186
R + PEC
Sbjct: 263 SRYPSMPPEC 272
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
H + DE+ IEFLG K +Q N Y G G G E L FD +K FH YA
Sbjct: 16 HGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFD 67
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
W P + + VD V + A P P + ++W+ +
Sbjct: 68 WQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 104
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
H + DE+ IEFLG K +Q N Y G G G E L FD +K FH YA
Sbjct: 99 HGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFD 150
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
W P + + VD V + A P P + ++W+ +
Sbjct: 151 WQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 187
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
H + DE+ IEFLG K +Q N Y G G G E L FD +K FH YA
Sbjct: 41 HGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFD 92
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
W P + + VD V + A P P + ++W+ +
Sbjct: 93 WQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 129
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
H + DE+ IEFLG K +Q N Y G G G E L FD +K FH YA
Sbjct: 41 HGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFD 92
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
W P + + VD V + A P P + ++W+ +
Sbjct: 93 WQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 129
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
H + DE+ IEFLG K +Q N Y G G G E L FD +K FH YA
Sbjct: 97 HGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFD 148
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
W P + + VD V + A P P + ++W+ +
Sbjct: 149 WQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 185
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
H + DE+ IEFLG K +Q N Y G G G E L FD +K FH YA
Sbjct: 41 HGTQWDEIDIEFLGKDTTK---VQFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFD 92
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
W P + + VD V + A P P + ++W+ +
Sbjct: 93 WQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 129
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 6 DEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKE 65
DE+ IEFLG K +Q N Y +G+ E I + L FD ++DFH YA W P
Sbjct: 124 DEIDIEFLGKDTTK---VQFNYYTNSAGNHEYI-----YDLRFDASEDFHIYAFNWQPNY 175
Query: 66 LIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIW 98
+ +LVD + R + P+ P + +IW
Sbjct: 176 IAWLVDGEEVYR----AYDDIPVHPGKIMLNIW 204
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 1 HPGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAIL 60
H + D++ I+FLG K +Q N Y G G G E L FD +K FH YA
Sbjct: 99 HGTQWDQIDIQFLGKDTTK---VQFNYYTNGVG-----GHEKVISLGFDASKGFHTYAFD 150
Query: 61 WSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
W P + + VD V + A P P + ++W+ +
Sbjct: 151 WQPGYIKWYVDGV----LKHTATANIPSTPGKIMMNLWNGT 187
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 6 DEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKE 65
DE+ IEFLG K +Q N Y G G+ E I +L FD +H YA W P
Sbjct: 91 DEIDIEFLGKDTTK---VQFNYYTNGVGNHEKI-----VNLGFDAANSYHTYAFDWQPNS 142
Query: 66 LIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
+ + VD + + P P +Y S+W +
Sbjct: 143 IKWYVDG----QLKHTATTQIPQTPGKIYMSLWAGA 174
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 6 DEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKE 65
DE+ IEFLG K +Q N Y G G+ E I +L FD +H YA W P
Sbjct: 104 DEIDIEFLGKDTTK---VQFNYYTNGVGNHEKI-----VNLGFDAANSYHTYAFDWQPNS 155
Query: 66 LIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDAS 101
+ + VD + + P P + ++W+ +
Sbjct: 156 IKWYVDG----QLKHTATTQIPQTPGKIMMNLWNGA 187
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 6 DEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKE 65
DE+ IEFLG K +Q N Y G+G+ E I L FD +H YA W P
Sbjct: 128 DEIDIEFLGKDTTK---VQFNYYTNGAGNHEKI-----VDLGFDAANAYHTYAFDWQPNS 179
Query: 66 LIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASS 102
+ + VD + + P P + ++W+ +
Sbjct: 180 IKWYVDG----QLKHTATNQIPTTPGKIMMNLWNGTG 212
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 37 IIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGS 96
+ G E L FD +K FH YA W P + + VD V + A P P + +
Sbjct: 1 VGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIPSTPGKIMMN 56
Query: 97 IWDAS 101
+W+ +
Sbjct: 57 LWNGT 61
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 53 DFHHYAILWSPKELIFLVDDVPIRRYPRK 81
DFH YAI W+P+E+ + VDD R+P +
Sbjct: 166 DFHVYAIEWTPEEIRWFVDDSLYYRFPNE 194
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 7 EVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKD--FHHYAILWSPK 64
EV IE LG + P + Q+N+ +G + + H P D FH Y + W+P
Sbjct: 56 EVDIEVLGKS---PGSFQSNIITGKAG----AQKTSEKHHAVSPAADQAFHTYGLEWTPN 108
Query: 65 ELIFLVDDVPIRR 77
+ + VD +R+
Sbjct: 109 YVRWTVDGQEVRK 121
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 7 EVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKD--FHHYAILWSPK 64
EV IE LG P + Q+N+ +G + + H P D FH Y + W+P
Sbjct: 56 EVDIEVLGKN---PGSFQSNIITGKAG----AQKTSEKHHAVSPAADQAFHTYGLEWTPN 108
Query: 65 ELIFLVDDVPIRR 77
+ + VD +R+
Sbjct: 109 YVRWTVDGQEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 7 EVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKD--FHHYAILWSPK 64
EV IE LG P + Q+N+ +G + + H P D FH Y + W+P
Sbjct: 53 EVDIEVLGKN---PGSFQSNIITGKAG----AQKTSEKHHAVSPAADQAFHTYGLEWTPN 105
Query: 65 ELIFLVDDVPIRR 77
+ + VD +R+
Sbjct: 106 YVRWTVDGQEVRK 118
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 7 EVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKD--FHHYAILWSPK 64
EV IE LG P + Q+N+ +G + + H P D FH Y + W+P
Sbjct: 54 EVDIEVLGK---NPGSFQSNIITGKAG----AQKTSEKHHAVSPAADQAFHTYGLEWTPN 106
Query: 65 ELIFLVDDVPIRR 77
+ + VD +R+
Sbjct: 107 YVRWTVDGQEVRK 119
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 7 EVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKD--FHHYAILWSPK 64
EV IE LG P + Q+N+ +G + + H P D FH Y + W+P
Sbjct: 53 EVDIEVLGKN---PGSFQSNIITGKAG----AQKTSEKHHAVSPAADQAFHTYGLEWTPN 105
Query: 65 ELIFLVDDVPIRR 77
+ + VD +R+
Sbjct: 106 YVRWTVDGQEVRK 118
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 7 EVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKD--FHHYAILWSPK 64
EV IE LG P + Q+N+ +G + +K H P D FH Y + W+P
Sbjct: 54 EVDIEVLGK---NPGSFQSNIITGKAGAQKT---SIKHHA-VSPAADQAFHTYGLEWTPN 106
Query: 65 ELIFLVDDVPIRR 77
+ + VD +R+
Sbjct: 107 YVRWTVDGQEVRK 119
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 49 DPTKDFHHYAILWSPKELIFLVDD 72
DPT ++H YA+ W+P L F D+
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYDN 232
>pdb|2KMC|A Chain A, Solution Structure Of The N-Terminal Domain Of Kindlin-1
Length = 102
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 24 QTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKSA 83
QT + +R SGD I G +K + +D+ YA+ W K L + + ++
Sbjct: 32 QTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQAD 91
Query: 84 ATFPLRP 90
A P
Sbjct: 92 ANLLFTP 98
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 44 FHLWFDPTKDFHHYAILWSPKELIFLVD 71
+HL FDP DFH Y + + ++ + VD
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVD 209
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 54 FHHYAILWSPKELIFLVDDVPIRRYPRKSAA 84
FH +A+ W P E+ + VD R R S
Sbjct: 164 FHTFAVDWKPGEITWFVDGQQFHRVTRASVG 194
>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
Length = 1052
Score = 27.3 bits (59), Expect = 5.7, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 30 RGSGDGEIIGREMKFHLWFDPTK 52
+G GD ++ G + +W DP K
Sbjct: 170 KGVGDFQVFGSQYSMRIWLDPAK 192
>pdb|3JUU|A Chain A, Crystal Structure Of Porphyranase B (Porb) From Zobellia
Galactanivorans
pdb|3JUU|B Chain B, Crystal Structure Of Porphyranase B (Porb) From Zobellia
Galactanivorans
Length = 280
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 22 TLQTNVYIRGSGDG---EIIGREMKFHLWFDPTKDFHHYAILWSPK-ELIFLVD------ 71
T+ +N + R +G E + K L +DFH Y + W K E+IF +D
Sbjct: 166 TMNSNTHSRNIPEGCEYEKGSSKGKAELGGKAYEDFHVYGVWWKSKDEIIFFLDGKMQSK 225
Query: 72 -----DVPIRRYPRKSAATFPLRPM 91
D I Y R T+ P+
Sbjct: 226 VTPPADFDIEMYLRMVVETYDWNPV 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.497
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,079,350
Number of Sequences: 62578
Number of extensions: 301987
Number of successful extensions: 652
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 33
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)