Query 043947
Match_columns 187
No_of_seqs 239 out of 1281
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:52:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02176 GH16_XET Xyloglucan en 100.0 6.7E-65 1.5E-69 432.8 22.8 178 4-186 78-263 (263)
2 PLN03161 Probable xyloglucan e 100.0 9.1E-65 2E-69 435.8 22.1 180 3-187 97-287 (291)
3 cd02183 GH16_fungal_CRH1_trans 100.0 3E-32 6.6E-37 224.7 16.5 121 2-131 70-202 (203)
4 cd02175 GH16_lichenase lichena 99.9 6.2E-26 1.3E-30 187.2 16.2 112 3-129 97-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 99.9 5.3E-23 1.2E-27 164.6 12.0 106 3-114 75-183 (185)
6 cd00413 Glyco_hydrolase_16 gly 99.9 6.9E-22 1.5E-26 160.9 15.5 113 4-128 97-209 (210)
7 cd02178 GH16_beta_agarase Beta 99.9 7.4E-22 1.6E-26 167.5 14.4 125 3-129 124-257 (258)
8 cd08023 GH16_laminarinase_like 99.9 3.7E-21 8E-26 160.2 15.0 117 4-128 112-234 (235)
9 PF06955 XET_C: Xyloglucan end 99.8 2.8E-20 6.1E-25 122.0 3.9 35 152-186 16-51 (51)
10 cd02182 GH16_Strep_laminarinas 99.8 3.4E-18 7.4E-23 145.2 13.2 117 5-129 128-258 (259)
11 cd02177 GH16_kappa_carrageenas 99.8 9.3E-18 2E-22 143.9 14.7 118 4-129 129-268 (269)
12 cd02180 GH16_fungal_KRE6_gluca 99.7 1.6E-17 3.5E-22 144.1 13.4 75 51-129 207-294 (295)
13 cd08024 GH16_CCF Coelomic cyto 99.7 7E-17 1.5E-21 142.0 13.2 101 4-104 147-279 (330)
14 cd02179 GH16_beta_GRP beta-1,3 99.7 7E-16 1.5E-20 135.3 11.5 97 4-101 145-268 (321)
15 COG2273 SKN1 Beta-glucanase/Be 99.7 8.5E-16 1.9E-20 136.3 12.0 113 4-126 149-262 (355)
16 PF03935 SKN1: Beta-glucan syn 98.8 2.5E-08 5.4E-13 91.9 9.4 86 51-142 365-465 (504)
17 cd02181 GH16_fungal_Lam16A_glu 96.2 0.014 3E-07 51.1 6.5 53 51-104 178-251 (293)
18 PF09264 Sial-lect-inser: Vibr 93.9 0.33 7.2E-06 39.9 7.6 27 52-78 92-120 (198)
19 PF13385 Laminin_G_3: Concanav 88.4 2.3 5E-05 31.1 6.7 65 50-129 83-147 (157)
20 cd00152 PTX Pentraxins are pla 83.3 18 0.00038 29.3 10.0 72 50-129 88-161 (201)
21 PF06439 DUF1080: Domain of Un 82.7 3.5 7.6E-05 32.1 5.5 32 50-81 125-156 (185)
22 smart00159 PTX Pentraxin / C-r 80.9 24 0.00052 28.7 10.0 25 51-75 89-115 (206)
23 cd00110 LamG Laminin G domain; 80.1 10 0.00023 28.0 7.1 27 52-78 80-106 (151)
24 smart00560 LamGL LamG-like jel 79.5 22 0.00049 26.6 8.8 69 49-132 58-129 (133)
25 PF09224 DUF1961: Domain of un 70.9 21 0.00047 30.0 7.1 59 52-128 159-218 (218)
26 PF06832 BiPBP_C: Penicillin-B 62.6 10 0.00023 26.5 3.3 35 65-99 44-79 (89)
27 smart00210 TSPN Thrombospondin 61.9 11 0.00024 30.1 3.7 29 51-79 116-144 (184)
28 KOG1834 Calsyntenin [Extracell 58.5 14 0.00029 36.3 4.1 73 52-129 442-515 (952)
29 PF14099 Polysacc_lyase: Polys 57.4 49 0.0011 26.8 6.9 73 46-128 146-224 (224)
30 PF10287 DUF2401: Putative TOS 57.2 49 0.0011 28.2 6.9 56 3-64 149-207 (235)
31 PF00354 Pentaxin: Pentaxin fa 57.1 1E+02 0.0023 24.9 10.0 85 51-162 83-169 (195)
32 smart00282 LamG Laminin G doma 46.8 1E+02 0.0022 22.4 6.6 27 52-78 62-88 (135)
33 PF12248 Methyltransf_FA: Farn 45.8 1.1E+02 0.0024 22.0 6.5 46 51-100 51-98 (102)
34 PF02210 Laminin_G_2: Laminin 42.9 1.2E+02 0.0025 21.3 8.6 74 51-129 53-126 (128)
35 PF07691 PA14: PA14 domain; I 36.7 59 0.0013 24.0 3.9 30 50-80 57-86 (145)
36 PF00337 Gal-bind_lectin: Gala 27.7 2.5E+02 0.0054 20.6 8.4 76 4-80 25-110 (133)
37 PF02973 Sialidase: Sialidase, 26.2 3.5E+02 0.0075 22.2 7.0 72 52-132 103-176 (190)
38 PF00135 COesterase: Carboxyle 23.9 43 0.00093 30.2 1.4 12 155-166 188-199 (535)
39 PF00722 Glyco_hydro_16: Glyco 21.5 1.1E+02 0.0024 23.7 3.2 32 89-127 154-185 (185)
No 1
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=6.7e-65 Score=432.83 Aligned_cols=178 Identities=49% Similarity=0.954 Sum_probs=161.6
Q ss_pred CCCeEeEEEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCEEEEEeeCCCC
Q 043947 4 RHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKSA 83 (187)
Q Consensus 4 ~~dEIDiE~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~~ 83 (187)
.+|||||||||+.+++|+++|||+|.+|.++ +++++.++|||+++||+|+|+|+|++|+|||||++||++++.+.
T Consensus 78 ~~~EID~E~lGn~~g~~~~~qtnv~~~g~g~-----r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~ 152 (263)
T cd02176 78 NHDEIDFEFLGNVTGQPYTLQTNVFANGVGG-----REQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEA 152 (263)
T ss_pred CCCeEEEEEecccCCCceEEEEEEeCCCCCC-----CceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccc
Confidence 4999999999999999999999999988765 77889999999999999999999999999999999999998654
Q ss_pred --CCCCC-CcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEEEeeecCCC-CcCCCCC-CCCCC---CCCCCHH
Q 043947 84 --ATFPL-RPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKACGCTAYAP-AWCRPVS-VSPFH---SGGLSRQ 155 (187)
Q Consensus 84 --~~~P~-~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~-~~c~~~~-~~~~~---~~~l~~~ 155 (187)
.+||+ +||+|++|||+||+|||+||++++||+++||+|+|++|.|.+|.+.+. ..|.... ..+|. +++|+++
T Consensus 153 ~g~~~P~~~Pm~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 232 (263)
T cd02176 153 LGVPYPSSQPMGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSAN 232 (263)
T ss_pred cCCCCCccceEEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHH
Confidence 68999 999999999999999999999999999999999999999999997654 4565432 22222 4789999
Q ss_pred HHHHHHHHHhCCeEEecccCCCCCCCCCCCC
Q 043947 156 QYWAMRWLQSHHLVYDYCRDQKRDHFLTPEC 186 (187)
Q Consensus 156 ~~~~~~~v~~~~m~YdYC~D~~R~~~~p~EC 186 (187)
|+++|+|||+||||||||+|++|||.+||||
T Consensus 233 ~~~~~~~~~~~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 233 QQRAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred HHHHHHHHHHCCEEEecCCCCCcCCCCcCCC
Confidence 9999999999999999999999999999999
No 2
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=9.1e-65 Score=435.80 Aligned_cols=180 Identities=41% Similarity=0.868 Sum_probs=162.8
Q ss_pred CCCCeEeEEEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCEEEEEeeCCC
Q 043947 3 GRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKS 82 (187)
Q Consensus 3 ~~~dEIDiE~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~ 82 (187)
+.||||||||||+++++|+++|||+|.+|.+. |+++++|+|||+++||+|+|+|+|++|+|||||++||++++.+
T Consensus 97 ~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~-----re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~ 171 (291)
T PLN03161 97 SRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGS-----REQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYE 171 (291)
T ss_pred CCCCeEEEEecCCCCCCceEEEeceEeCCcCC-----cceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEccc
Confidence 47999999999999999999999999988775 7889999999999999999999999999999999999998765
Q ss_pred C--CCCCC-CcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEEEeeecCCC---CcCCCCC-CCCCC---CCCC
Q 043947 83 A--ATFPL-RPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKACGCTAYAP---AWCRPVS-VSPFH---SGGL 152 (187)
Q Consensus 83 ~--~~~P~-~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~~c~~~~~---~~c~~~~-~~~~~---~~~l 152 (187)
. .+||+ +||+|++|||+|++|||+||++||||+++||+|.|++|.++||.+.+. ..|.+.+ ..+|. ++.|
T Consensus 172 ~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l 251 (291)
T PLN03161 172 NEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQL 251 (291)
T ss_pred ccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccCC
Confidence 3 67998 899999999999999999999999999999999999999999987542 4687542 22322 3689
Q ss_pred CHHHHHHHHHHHhCCeEEecccCCCCCCC-CCCCCC
Q 043947 153 SRQQYWAMRWLQSHHLVYDYCRDQKRDHF-LTPECY 187 (187)
Q Consensus 153 ~~~~~~~~~~v~~~~m~YdYC~D~~R~~~-~p~EC~ 187 (187)
+++|+++|+|||+||||||||+|++|||+ +||||.
T Consensus 252 ~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~ 287 (291)
T PLN03161 252 TNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECF 287 (291)
T ss_pred CHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccC
Confidence 99999999999999999999999999998 899994
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=3e-32 Score=224.73 Aligned_cols=121 Identities=24% Similarity=0.461 Sum_probs=104.1
Q ss_pred CCCCCeEeEEEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCEEEEEeeCC
Q 043947 2 PGRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRK 81 (187)
Q Consensus 2 ~~~~dEIDiE~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~ 81 (187)
++.++|||||++|++ +..+|+|+|.+|..... ++.+.+.+.++++++||+|+|+|+|++|+|||||+++|++++.
T Consensus 70 ~~~~gEIDIE~~G~~---~~~~~tn~~~~g~~~~~--~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~ 144 (203)
T cd02183 70 SDDLDEIDWEWVGGD---LTQVQTNYFGKGNTTTY--DRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKA 144 (203)
T ss_pred CCCCCEEEEEecCCC---CCEEEeEEECCCCCCCC--CCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehh
Confidence 567899999999964 45999999977654222 2456677889999999999999999999999999999999875
Q ss_pred C---CCCCCCCcceEEEeeeeccc---------cCcCCCccccCCCCCCeEEEEeEEEEEee
Q 043947 82 S---AATFPLRPMWVYGSIWDASS---------WATEDGKYKADYRYQPFVARYTDFKACGC 131 (187)
Q Consensus 82 ~---~~~~P~~Pm~l~lniW~gg~---------Wat~gG~~~~d~~~~Pf~a~~~~~~v~~c 131 (187)
+ ...||.+||+|++|+|+||+ || || ++||+.+||+|.|++|+|..+
T Consensus 145 ~~~~~~~~p~~P~~l~ln~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~~ 202 (203)
T cd02183 145 DTTGGYGYPQTPMRLQIGIWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTDY 202 (203)
T ss_pred hcccCCCCCCCCcEEEEEEecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEeC
Confidence 4 36799999999999999985 99 77 799999999999999999843
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=99.94 E-value=6.2e-26 Score=187.22 Aligned_cols=112 Identities=30% Similarity=0.549 Sum_probs=95.5
Q ss_pred CCCCeEeEEEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCEEEEEeeCCC
Q 043947 3 GRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKS 82 (187)
Q Consensus 3 ~~~dEIDiE~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~ 82 (187)
+.++|||||++|++.. .+|+|+|.+|.+. .+..+.+.+|++++||+|+|+|+|++|+|||||++++++...+
T Consensus 97 ~~~~EIDiE~~g~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~ 168 (212)
T cd02175 97 DPHDEIDIEFLGKDTT---KVQFNYYTNGVGG-----HEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD 168 (212)
T ss_pred CCCCEEEEEEccCCCC---EeEEEEECCCCCC-----CceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc
Confidence 3579999999997654 7899999876553 3355677899999999999999999999999999999998753
Q ss_pred CCCCCCCcceEEEeeeecc---ccCcCCCccccCCCCCCeEEEEeEEEEE
Q 043947 83 AATFPLRPMWVYGSIWDAS---SWATEDGKYKADYRYQPFVARYTDFKAC 129 (187)
Q Consensus 83 ~~~~P~~Pm~l~lniW~gg---~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 129 (187)
..+|.+||+|++|+|.|+ +|+ | +++. .+|++|++++|++.
T Consensus 169 -~~~p~~p~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 169 -PNIPDTPGKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred -CCCCCCCcEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 468899999999999985 698 5 5676 89999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=99.89 E-value=5.3e-23 Score=164.64 Aligned_cols=106 Identities=33% Similarity=0.675 Sum_probs=89.7
Q ss_pred CCCCeEeEEEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCEEEEEeeCCC
Q 043947 3 GRHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKS 82 (187)
Q Consensus 3 ~~~dEIDiE~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~ 82 (187)
+.++|||||++|+.+. .+++|+|..|.+... .+..+.+.++++++||+|+|+|+|++|+|||||++++++....
T Consensus 75 ~~~~EIDiE~~g~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~ 148 (185)
T PF00722_consen 75 PDGGEIDIEFLGNDPT---QVQTNVHWNGDGDSN---WEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSD 148 (185)
T ss_dssp TTTEEEEEEEETTSTT---EEEEEEEBTTBSCEE---EEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSG
T ss_pred cchhhhhhhhcccccc---ceeeeeeecccCCcc---cceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccc
Confidence 5688999999998665 799999988877521 2466778899999999999999999999999999999999875
Q ss_pred C--CCCCC-CcceEEEeeeeccccCcCCCccccCC
Q 043947 83 A--ATFPL-RPMWVYGSIWDASSWATEDGKYKADY 114 (187)
Q Consensus 83 ~--~~~P~-~Pm~l~lniW~gg~Wat~gG~~~~d~ 114 (187)
. .+||. .||+|.+++|.|++|++..|++.|||
T Consensus 149 ~~~~~~P~~~~~~~~~~~w~~~~~~~~~~~m~vDw 183 (185)
T PF00722_consen 149 VPGSPYPFSTPMNLALGLWPGGDWAGPAGEMEVDW 183 (185)
T ss_dssp STTTCSSEEEEEEEEEEECEBTTTHSSECEEEEEE
T ss_pred cccccCcccceeEEEEccccCCCCCCCCCEEEEEe
Confidence 3 35899 99999999999999997777555555
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=99.88 E-value=6.9e-22 Score=160.91 Aligned_cols=113 Identities=35% Similarity=0.582 Sum_probs=91.2
Q ss_pred CCCeEeEEEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCEEEEEeeCCCC
Q 043947 4 RHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKSA 83 (187)
Q Consensus 4 ~~dEIDiE~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~~ 83 (187)
..+|||||++|++ +..+++++|..+.+.....+....+.+.+++.++||+|+|+|+|+.|+|||||++++++.+.
T Consensus 97 ~~~EIDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~-- 171 (210)
T cd00413 97 DGGEIDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ-- 171 (210)
T ss_pred CCCeEEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC--
Confidence 4899999999976 34789999986654210011334556677789999999999999999999999999999753
Q ss_pred CCCCCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEE
Q 043947 84 ATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKA 128 (187)
Q Consensus 84 ~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v 128 (187)
.|.+||+|+||+|.+++|+ | ..+....|..|.++.|+|
T Consensus 172 --~p~~p~~i~ln~~~~~~~~---~--~~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 172 --VPDDPMNIILNLWSDGGWW---W--GGPPPGAPAYMEIDWVRV 209 (210)
T ss_pred --CCCCCcEEEEEEEECCCCc---c--cCCCCCCCcEEEEEEEEE
Confidence 7889999999999999888 2 245578999999999987
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=99.88 E-value=7.4e-22 Score=167.51 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=91.1
Q ss_pred CCCCeEeE-EEeCccCC--CCeEEEeeeEECCCCCCcccce---eeeEeecCCCCCCcEEEEEEec-cCeeEEEECCEEE
Q 043947 3 GRHDEVGI-EFLGTTFG--KPYTLQTNVYIRGSGDGEIIGR---EMKFHLWFDPTKDFHHYAILWS-PKELIFLVDDVPI 75 (187)
Q Consensus 3 ~~~dEIDi-E~lG~~~~--~p~~vqtnv~~~G~~~~~~~g~---~~~~~l~fd~s~dfH~Y~i~Wt-p~~I~fyVDg~~v 75 (187)
+.++|||| |++|+..+ .+..+|+++|..+.+......+ ...+.+.++++++||+|+|+|+ |++|+|||||+++
T Consensus 124 ~~~gEIDI~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~ 203 (258)
T cd02178 124 DSTTEIDILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLV 203 (258)
T ss_pred CCCCcEEhhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEE
Confidence 36899999 99997632 2457899987543321100001 2334456778899999999999 9999999999999
Q ss_pred EEeeCCCC-CCCCC-CcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEEE
Q 043947 76 RRYPRKSA-ATFPL-RPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKAC 129 (187)
Q Consensus 76 r~~~~~~~-~~~P~-~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 129 (187)
+++.+.+. ..+|+ +||+|+||+++|| |++..+. ...-...|..|.++.|+|.
T Consensus 204 ~~~~~~~~~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 204 RTVENSEITDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred EEEcCcccCcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 99987543 45777 9999999999998 9942221 1222456999999999984
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.87 E-value=3.7e-21 Score=160.18 Aligned_cols=117 Identities=24% Similarity=0.469 Sum_probs=91.2
Q ss_pred CCCeEeE-EEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecC-CCCCCcEEEEEEeccCeeEEEECCEEEEEeeCC
Q 043947 4 RHDEVGI-EFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWF-DPTKDFHHYAILWSPKELIFLVDDVPIRRYPRK 81 (187)
Q Consensus 4 ~~dEIDi-E~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~f-d~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~ 81 (187)
..+|||| |++|+. +..+++++|..+..... .+....+.+.+ +++++||+|+|+|+|++|+|||||++|+++++.
T Consensus 112 ~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~~ 187 (235)
T cd08023 112 ASGEIDIMEYVGNE---PNTVYGTLHGGATNDGN-NGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTNP 187 (235)
T ss_pred CCCcceeEecCCCC---CCeEEEEEECCCCCCCC-CcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEccc
Confidence 3689999 999976 34899999987754100 11234455554 789999999999999999999999999999876
Q ss_pred CCC---CCCC-CcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEE
Q 043947 82 SAA---TFPL-RPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKA 128 (187)
Q Consensus 82 ~~~---~~P~-~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v 128 (187)
... .+|+ +||+|+||+|+|++|+ |. ...-...|..|.++.|+|
T Consensus 188 ~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 188 NTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRV 234 (235)
T ss_pred ccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEE
Confidence 532 3565 9999999999999999 41 134567889999999987
No 9
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.80 E-value=2.8e-20 Score=122.04 Aligned_cols=35 Identities=46% Similarity=0.889 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHhCCeEEecccCCCCCCCC-CCCC
Q 043947 152 LSRQQYWAMRWLQSHHLVYDYCRDQKRDHFL-TPEC 186 (187)
Q Consensus 152 l~~~~~~~~~~v~~~~m~YdYC~D~~R~~~~-p~EC 186 (187)
|+++|+++|+|||+||||||||+|++|||.. |+||
T Consensus 16 L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 16 LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp --HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 9999999999999999999999999999975 9999
No 10
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.78 E-value=3.4e-18 Score=145.17 Aligned_cols=117 Identities=13% Similarity=0.084 Sum_probs=77.9
Q ss_pred CCeEeE-EEeCccCCCCeEEEeeeEECCCCCCcccceeee-Ee-ecCCCCCCcEEEEEEecc-----CeeEEEECCEEEE
Q 043947 5 HDEVGI-EFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMK-FH-LWFDPTKDFHHYAILWSP-----KELIFLVDDVPIR 76 (187)
Q Consensus 5 ~dEIDi-E~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~-~~-l~fd~s~dfH~Y~i~Wtp-----~~I~fyVDg~~vr 76 (187)
.+|||| |.+|... .++.++|.....+... ++.. .. ....+.++||+|+|+|++ ++|+|||||++++
T Consensus 128 ~GEIDImE~~~~~~----~~~~t~H~~~~~~~~~--~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG~~~~ 201 (259)
T cd02182 128 CGELDIMENVNGLS----TGYGTLHCGVAPGGPC--NEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDGVVYH 201 (259)
T ss_pred cceeeeeeccCCCC----ceEEEEeeCCCCCCCC--ccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECCEEEE
Confidence 479999 9998543 3445566532111000 0010 00 011245899999999997 9999999999999
Q ss_pred EeeCCCC---CCC---CCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEEE
Q 043947 77 RYPRKSA---ATF---PLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKAC 129 (187)
Q Consensus 77 ~~~~~~~---~~~---P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 129 (187)
+++.... ..| |.+||+|+||+++||+|+.... ...-...|-.|.++.|+|.
T Consensus 202 t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~~~~~--~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 202 TVTGARVGDETTWQALAHHPLFIILNVAVGGNWPGAPN--GNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEehhhcCCCccccCcCCCCeEEEEEEEEeCCcCCCCC--cccccCCCceEEEEEEEEe
Confidence 9986421 222 3499999999999999983211 1123457899999999984
No 11
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.77 E-value=9.3e-18 Score=143.91 Aligned_cols=118 Identities=25% Similarity=0.312 Sum_probs=83.0
Q ss_pred CCCeEeE-EEeCccC---CCCe----EEEeeeEECCCCCCc---cc--ceeeeEeecCCCCCCcEEEEEEeccCeeEEEE
Q 043947 4 RHDEVGI-EFLGTTF---GKPY----TLQTNVYIRGSGDGE---II--GREMKFHLWFDPTKDFHHYAILWSPKELIFLV 70 (187)
Q Consensus 4 ~~dEIDi-E~lG~~~---~~p~----~vqtnv~~~G~~~~~---~~--g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyV 70 (187)
.++|||| |++|... +++. ++|++++.+|.+... .. .....+.+++|++++||+|+|+|+|++|+|||
T Consensus 129 ~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~W~~~~i~~yv 208 (269)
T cd02177 129 VYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCNVNQDEIIWYV 208 (269)
T ss_pred CCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEEEeCCEEEEEE
Confidence 4789999 8887541 2233 455555545543210 00 01234668889999999999999999999999
Q ss_pred CCEEEEEeeCCCCCCCCCCcceEEEeeeecc---------ccCcCCCccccCCCCCCeEEEEeEEEEE
Q 043947 71 DDVPIRRYPRKSAATFPLRPMWVYGSIWDAS---------SWATEDGKYKADYRYQPFVARYTDFKAC 129 (187)
Q Consensus 71 Dg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg---------~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 129 (187)
||++++++.+ .+..+||.|.+++-.+. .|| |+ ..+-+..|-.|+++.|+|-
T Consensus 209 Dg~~~~~~~~----~~w~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv~ 268 (269)
T cd02177 209 DGVEVGRKPN----KYWHRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRVW 268 (269)
T ss_pred CCEEEEEEcC----CccccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEEe
Confidence 9999999975 34458888888875432 355 33 4556789999999999983
No 12
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.75 E-value=1.6e-17 Score=144.11 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=62.8
Q ss_pred CCCcEEEEEEecc-----CeeEEEECCEEEEEeeCCCC--------CCCCCCcceEEEeeeeccccCcCCCccccCCCCC
Q 043947 51 TKDFHHYAILWSP-----KELIFLVDDVPIRRYPRKSA--------ATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQ 117 (187)
Q Consensus 51 s~dfH~Y~i~Wtp-----~~I~fyVDg~~vr~~~~~~~--------~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~ 117 (187)
.++||+|+|+|+| ++|+|||||+++++++.... ..+|.+||+|+||+++||+|+ | .+.+-...
T Consensus 207 ~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~~P~ylILNlAvGg~w~---g-~~~~~~~~ 282 (295)
T cd02180 207 GNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPEEPMYIILNLGISSNFQ---D-IDWDELQF 282 (295)
T ss_pred CCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCCCCeEEEEEEEeccccC---C-CCcccCCC
Confidence 5799999999999 89999999999999986521 235679999999999999998 3 13345677
Q ss_pred CeEEEEeEEEEE
Q 043947 118 PFVARYTDFKAC 129 (187)
Q Consensus 118 Pf~a~~~~~~v~ 129 (187)
|-.|+++.|+|.
T Consensus 283 P~~m~VDyVRVY 294 (295)
T cd02180 283 PATMRIDYVRVY 294 (295)
T ss_pred CCEEEEEEEEEE
Confidence 899999999985
No 13
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.72 E-value=7e-17 Score=142.03 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=71.4
Q ss_pred CCCeEeE-EEeCccCCC-------CeEEEeeeEECCCCCCc--ccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCE
Q 043947 4 RHDEVGI-EFLGTTFGK-------PYTLQTNVYIRGSGDGE--IIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDV 73 (187)
Q Consensus 4 ~~dEIDi-E~lG~~~~~-------p~~vqtnv~~~G~~~~~--~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~ 73 (187)
..+|||| |.+|+.... ...+++++|........ ............+.+++||+|+|+|+|++|+|||||+
T Consensus 147 ~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~ 226 (330)
T cd08024 147 RSGEIDIMESRGNRPLYDGGEAIGINSVGSTLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDR 226 (330)
T ss_pred CCCcEEEEEEeCCCcccccccccCcceEEEEEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCE
Confidence 3689999 999976432 12577778754322110 0001111122356688999999999999999999999
Q ss_pred EEEEeeCCC---------------------CCCCCC-CcceEEEeeeeccccC
Q 043947 74 PIRRYPRKS---------------------AATFPL-RPMWVYGSIWDASSWA 104 (187)
Q Consensus 74 ~vr~~~~~~---------------------~~~~P~-~Pm~l~lniW~gg~Wa 104 (187)
+++++.... ....|+ +||||+|||++||.|.
T Consensus 227 ~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 227 LILTLDVPGQGFWEFGGFSGTPIDNPWAGGGKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred EEEEEecCCCCceeeccccccccCCcccccCcCCCCCCCEEEEEEEEecCCCC
Confidence 999998520 134688 9999999999999876
No 14
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.66 E-value=7e-16 Score=135.29 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=64.0
Q ss_pred CCCeEeE-EEeCccCCC-------CeEEEeeeEECCCCCCcccceeeeEeecCCCCCCcEEEEEEeccCeeEEEECCEEE
Q 043947 4 RHDEVGI-EFLGTTFGK-------PYTLQTNVYIRGSGDGEIIGREMKFHLWFDPTKDFHHYAILWSPKELIFLVDDVPI 75 (187)
Q Consensus 4 ~~dEIDi-E~lG~~~~~-------p~~vqtnv~~~G~~~~~~~g~~~~~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~~v 75 (187)
..+|||| |.+||.... ..+++...|......... ..........+.+++||+|+|+|+|++|+|||||+++
T Consensus 145 ~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g~~~~~~~~~~~-~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~ 223 (321)
T cd02179 145 ASGQIRIAFARGNAVLRADGTDIGGKKLYGGPVLTDAEPHRS-ANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEY 223 (321)
T ss_pred CCCeEEEEEeCCCCccccCCceeccceEEcccccCCCccccc-ccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEE
Confidence 4699999 999985210 013333333211110000 0001111234567999999999999999999999999
Q ss_pred EEeeCCCC------------------CCCCC-CcceEEEeeeecc
Q 043947 76 RRYPRKSA------------------ATFPL-RPMWVYGSIWDAS 101 (187)
Q Consensus 76 r~~~~~~~------------------~~~P~-~Pm~l~lniW~gg 101 (187)
+++..... ...|+ +||||+|||++||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD~~FyliLNlAVGG 268 (321)
T cd02179 224 GEIEPGEGGYSEAANNPAASRWLGGTVMAPFDKEFYLSLGVGVGG 268 (321)
T ss_pred EEEecCcCccccccccccCccccccCccCCCCCCeEEEEEEEecC
Confidence 99986321 34688 9999999999987
No 15
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=8.5e-16 Score=136.31 Aligned_cols=113 Identities=27% Similarity=0.405 Sum_probs=87.2
Q ss_pred CCCeEeEEEeCccCCCCeEEEeeeEECCCCCCcccceeeeEeecC-CCCCCcEEEEEEeccCeeEEEECCEEEEEeeCCC
Q 043947 4 RHDEVGIEFLGTTFGKPYTLQTNVYIRGSGDGEIIGREMKFHLWF-DPTKDFHHYAILWSPKELIFLVDDVPIRRYPRKS 82 (187)
Q Consensus 4 ~~dEIDiE~lG~~~~~p~~vqtnv~~~G~~~~~~~g~~~~~~l~f-d~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~ 82 (187)
-++|||||+||++.. +..+|+|.+.++.+. .+....+.+ +..++||+|+++|.++.|+|||||++++++...
T Consensus 149 wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~-----~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p- 221 (355)
T COG2273 149 WPDEIDIEDLGGQST-NTVIQTNHYQGGGGG-----TSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP- 221 (355)
T ss_pred CCcceeeeeecCCCc-ccceEeeeeccCCCC-----ceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc-
Confidence 369999999997654 345999999888775 233444455 888999999999999999999999999999864
Q ss_pred CCCCCCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEE
Q 043947 83 AATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDF 126 (187)
Q Consensus 83 ~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~ 126 (187)
...|+.||++++|+|.++.+.+.-| .......|..+.+..+
T Consensus 222 -~~~~~~p~y~~~nl~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 262 (355)
T COG2273 222 -DYIPQIPFYVLVNLWMGGYAGGPPG--EALSAGSPLNIDYYRV 262 (355)
T ss_pred -ccCcCCcceeEEeecccCccCCCcc--ccccCCcceEeeeeee
Confidence 3458999999999999986654323 3444555666666554
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=98.79 E-value=2.5e-08 Score=91.86 Aligned_cols=86 Identities=19% Similarity=0.304 Sum_probs=68.3
Q ss_pred CCCcEEEEEEeccC-----eeEEEECCEEEEEeeCCCC--------CCCCCCcceEEEeeeeccccCcCCCccccCCC--
Q 043947 51 TKDFHHYAILWSPK-----ELIFLVDDVPIRRYPRKSA--------ATFPLRPMWVYGSIWDASSWATEDGKYKADYR-- 115 (187)
Q Consensus 51 s~dfH~Y~i~Wtp~-----~I~fyVDg~~vr~~~~~~~--------~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~-- 115 (187)
..+||+|++||.|. .|+|+|||+++.++....- ...|..||+|++||....+|+ .+||.
T Consensus 365 ~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~~~~I~~R~Ip~EPMyIIlNlgmS~sf~------~vd~~~L 438 (504)
T PF03935_consen 365 GGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGPNPNIGQRPIPEEPMYIILNLGMSSSFG------YVDWNHL 438 (504)
T ss_pred CCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCCCCCcCccccCcCCceeeeccccccccC------ccccccc
Confidence 37899999999874 8999999999999986531 357889999999999999998 67775
Q ss_pred CCCeEEEEeEEEEEeeecCCCCcCCCC
Q 043947 116 YQPFVARYTDFKACGCTAYAPAWCRPV 142 (187)
Q Consensus 116 ~~Pf~a~~~~~~v~~c~~~~~~~c~~~ 142 (187)
..|.+|.++.|+|.-=.....-.|...
T Consensus 439 ~FP~~M~IDYVRVYQ~~~~~~vgCDP~ 465 (504)
T PF03935_consen 439 CFPATMRIDYVRVYQPEDAINVGCDPP 465 (504)
T ss_pred cccceEEEeEEEEeccCCCCeeeeCCC
Confidence 478899999999963322223567643
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=96.21 E-value=0.014 Score=51.06 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCCcEEEEEEeccCeeEEEEC---CEEEEEeeCCC--C-------CCCCC---------CcceEEEeeeeccccC
Q 043947 51 TKDFHHYAILWSPKELIFLVD---DVPIRRYPRKS--A-------ATFPL---------RPMWVYGSIWDASSWA 104 (187)
Q Consensus 51 s~dfH~Y~i~Wtp~~I~fyVD---g~~vr~~~~~~--~-------~~~P~---------~Pm~l~lniW~gg~Wa 104 (187)
+.+=-+|+++|+.+.|+...= .+|-- ++... + ..||. ++++|++||-.=|+||
T Consensus 178 ~~GGGvyA~ew~~~~I~vWff~R~~iP~d-i~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 178 AAGGGVYAMEWTSDGIKVWFFPRGSIPAD-ITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred cCCCcEEEEEEccCcEEEEEecCCCCCcc-cccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 356689999999999975543 22211 11111 0 34553 8999999999999999
No 18
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=93.94 E-value=0.33 Score=39.92 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=24.9
Q ss_pred CCcEEEEEEecc--CeeEEEECCEEEEEe
Q 043947 52 KDFHHYAILWSP--KELIFLVDDVPIRRY 78 (187)
Q Consensus 52 ~dfH~Y~i~Wtp--~~I~fyVDg~~vr~~ 78 (187)
.+||.|.|.-.| ..-.|||||++|++.
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeec
Confidence 479999999988 889999999999985
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=88.43 E-value=2.3 Score=31.11 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=39.7
Q ss_pred CCCCcEEEEEEeccCeeEEEECCEEEEEeeCCCCCCCCCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEEE
Q 043947 50 PTKDFHHYAILWSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKAC 129 (187)
Q Consensus 50 ~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 129 (187)
+...+|..++.|....+.+||||+++.+.........+ ....+ -.|+.. ....+|...+++++|-
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~~~~~-~~~~~----~iG~~~----------~~~~~~~g~i~~~~i~ 147 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSNISLN-SNGPL----FIGGSG----------GGSSPFNGYIDDLRIY 147 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESSSSTT-SCCEE----EESS-S----------TT--B-EEEEEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCCcCCC-CcceE----EEeecC----------CCCCceEEEEEEEEEE
Confidence 35899999999999999999999998776432211111 11111 223221 2377899999999986
No 20
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=83.29 E-value=18 Score=29.32 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=40.4
Q ss_pred CCCCcEEEEEEec--cCeeEEEECCEEEEEeeCCCCCCCCCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEE
Q 043947 50 PTKDFHHYAILWS--PKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFK 127 (187)
Q Consensus 50 ~s~dfH~Y~i~Wt--p~~I~fyVDg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~ 127 (187)
....+|...+.|+ ..++.+||||+++..-.-.....++.. ..|.| |..--.-|| ..+ ....|.=.+.+|+
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~~~~~~~~~~~-g~l~l----G~~q~~~gg--~~~-~~~~f~G~I~~v~ 159 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKSLKKGYTVGPG-GSIIL----GQEQDSYGG--GFD-ATQSFVGEISDVN 159 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEeccccccCCCEECCC-CeEEE----eecccCCCC--CCC-CCcceEEEEceeE
Confidence 4568999999998 446999999998754321111122211 12222 211111134 233 2346888888888
Q ss_pred EE
Q 043947 128 AC 129 (187)
Q Consensus 128 v~ 129 (187)
|-
T Consensus 160 iw 161 (201)
T cd00152 160 MW 161 (201)
T ss_pred EE
Confidence 74
No 21
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=82.74 E-value=3.5 Score=32.13 Aligned_cols=32 Identities=13% Similarity=0.363 Sum_probs=29.0
Q ss_pred CCCCcEEEEEEeccCeeEEEECCEEEEEeeCC
Q 043947 50 PTKDFHHYAILWSPKELIFLVDDVPIRRYPRK 81 (187)
Q Consensus 50 ~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~ 81 (187)
+..++|++.|.-..++|+.+|||++|.++...
T Consensus 125 ~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 125 PPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp -TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 56899999999999999999999999999864
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=80.91 E-value=24 Score=28.70 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCCcEEEEEEecc--CeeEEEECCEEE
Q 043947 51 TKDFHHYAILWSP--KELIFLVDDVPI 75 (187)
Q Consensus 51 s~dfH~Y~i~Wtp--~~I~fyVDg~~v 75 (187)
...+|...+.|+. .++.+||||+++
T Consensus 89 ~g~W~hvc~tw~~~~g~~~lyvnG~~~ 115 (206)
T smart00159 89 DGKWHHICTTWESSSGIAELWVDGKPG 115 (206)
T ss_pred CCceEEEEEEEECCCCcEEEEECCEEc
Confidence 4789999999984 469999999986
No 23
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=80.06 E-value=10 Score=28.04 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCcEEEEEEeccCeeEEEECCEEEEEe
Q 043947 52 KDFHHYAILWSPKELIFLVDDVPIRRY 78 (187)
Q Consensus 52 ~dfH~Y~i~Wtp~~I~fyVDg~~vr~~ 78 (187)
..+|.-.|.+....+..+|||..+.+.
T Consensus 80 g~Wh~v~i~~~~~~~~l~VD~~~~~~~ 106 (151)
T cd00110 80 GQWHSVSVERNGRSVTLSVDGERVVES 106 (151)
T ss_pred CCEEEEEEEECCCEEEEEECCccEEee
Confidence 579999999999999999999854333
No 24
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=79.53 E-value=22 Score=26.58 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=44.0
Q ss_pred CCCCCcEEEEEEecc--CeeEEEECCEEEEEeeCCCCCCCCC-CcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeE
Q 043947 49 DPTKDFHHYAILWSP--KELIFLVDDVPIRRYPRKSAATFPL-RPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTD 125 (187)
Q Consensus 49 d~s~dfH~Y~i~Wtp--~~I~fyVDg~~vr~~~~~~~~~~P~-~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~ 125 (187)
++...+|--++-++. .+|++||||+++.+.... ..+. .|+.|-..+.. ++ ....+|.-.+++
T Consensus 58 ~~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~---~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Ide 122 (133)
T smart00560 58 DWIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ---PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLDE 122 (133)
T ss_pred CCCCCEEEEEEEEECCCCeEEEEECCEEccccccC---CcccCCceEEeeeccC-------CC-----CCCCCceEEeeE
Confidence 345789999999998 799999999998754321 1121 33332211111 11 124578889999
Q ss_pred EEEEeee
Q 043947 126 FKACGCT 132 (187)
Q Consensus 126 ~~v~~c~ 132 (187)
++|-.+.
T Consensus 123 vriy~~a 129 (133)
T smart00560 123 VRVYNRA 129 (133)
T ss_pred EEEeccc
Confidence 9987654
No 25
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=70.92 E-value=21 Score=29.99 Aligned_cols=59 Identities=19% Similarity=0.447 Sum_probs=39.0
Q ss_pred CCcEEEEEEeccCeeEEEECCEEEEEeeCCCCCCCCCCcceEEEeeeeccccCcCCCccccCCC-CCCeEEEEeEEEE
Q 043947 52 KDFHHYAILWSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYR-YQPFVARYTDFKA 128 (187)
Q Consensus 52 ~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~-~~Pf~a~~~~~~v 128 (187)
..++.-.|.=....|.|.|||.+|...........|- -.+| +|-.. -+|..|.|+++.|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~~~gPv----------------l~~G--~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGSTYGPV----------------LRGG--RIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SSSSSS-------------------SB--EEEEEEETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCCccCCc----------------ccCc--EeeeeccchhhhhhccccC
Confidence 3666668889999999999999999997543222331 0135 44443 5899999999986
No 26
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=62.57 E-value=10 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=24.4
Q ss_pred eeEEEECCEEEEEeeCCCCCCCCC-CcceEEEeeee
Q 043947 65 ELIFLVDDVPIRRYPRKSAATFPL-RPMWVYGSIWD 99 (187)
Q Consensus 65 ~I~fyVDg~~vr~~~~~~~~~~P~-~Pm~l~lniW~ 99 (187)
.+.|||||+++.+........|+- .|-.-.|.+=+
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD 79 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVD 79 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEc
Confidence 788999999997766544444554 66666666643
No 27
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=61.91 E-value=11 Score=30.14 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCCcEEEEEEeccCeeEEEECCEEEEEee
Q 043947 51 TKDFHHYAILWSPKELIFLVDDVPIRRYP 79 (187)
Q Consensus 51 s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~ 79 (187)
...||.-+|.+..+++++|||++.+.+..
T Consensus 116 dg~WH~lal~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 116 DGQWHKLALSVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred cCCceEEEEEEeCCEEEEEECCcccccee
Confidence 46899999999999999999999988764
No 28
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=58.51 E-value=14 Score=36.25 Aligned_cols=73 Identities=15% Similarity=0.290 Sum_probs=49.7
Q ss_pred CCcEEEEEEeccCeeEEEECCEEEEEeeCCCCCCCCCCcceEEEeeeeccccCcCCCccccCCCCC-CeEEEEeEEEEE
Q 043947 52 KDFHHYAILWSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQ-PFVARYTDFKAC 129 (187)
Q Consensus 52 ~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~-Pf~a~~~~~~v~ 129 (187)
+++|-|.+.-.--.+..||||+-..-..-. ..||-+|.++-..|=+|.=|- |++.+ .-.-+ -|--++.++.+.
T Consensus 442 ~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~--ddwplHpsk~~tqLvVGACW~--g~~~~-~l~~aqfFrG~Lasltlr 515 (952)
T KOG1834|consen 442 NEWHHYVLNVEFPDVTLYVDGKSFEPPLIT--DDWPLHPSKIETQLVVGACWQ--GRQQK-PLKLAQFFRGQLASLTLR 515 (952)
T ss_pred hhhheeEEeecCceEEEEEcCcccCCceec--cCCccCcccccceeEEeeecc--Ccccc-chhHHHHhhcccceeEEe
Confidence 589999999988889999999865332221 579999988888888898998 33222 11111 244455566655
No 29
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=57.37 E-value=49 Score=26.75 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=45.1
Q ss_pred ecCCCCCCcEEEEE--Eecc---CeeEEEECCEEEEEeeCCCCCCCCC-CcceEEEeeeeccccCcCCCccccCCCCCCe
Q 043947 46 LWFDPTKDFHHYAI--LWSP---KELIFLVDDVPIRRYPRKSAATFPL-RPMWVYGSIWDASSWATEDGKYKADYRYQPF 119 (187)
Q Consensus 46 l~fd~s~dfH~Y~i--~Wtp---~~I~fyVDg~~vr~~~~~~~~~~P~-~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf 119 (187)
+...+...+|.+.| .|++ ..|..++||++|..++.. ..++. +..++.+.|--.+ |.+..+ ..+-.
T Consensus 146 ~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~--~~~~~~~~~y~K~GiYr~~-~~~~~~--~~~~~---- 216 (224)
T PF14099_consen 146 LGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGP--TGYNDDRGPYFKFGIYRSG-WKNDPN--ESDTQ---- 216 (224)
T ss_dssp CCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEE--ECECCSSEEEEEEEEEEHC-CHHHSC----SS-----
T ss_pred CCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCC--ceeCCCCcceeEEEEECCC-CcCCCc--ccccE----
Confidence 33344589999887 5886 679999999999988762 33444 6778888777543 221111 11111
Q ss_pred EEEEeEEEE
Q 043947 120 VARYTDFKA 128 (187)
Q Consensus 120 ~a~~~~~~v 128 (187)
++|++|++
T Consensus 217 -vy~D~v~~ 224 (224)
T PF14099_consen 217 -VYYDNVRI 224 (224)
T ss_dssp -EEEEEEE-
T ss_pred -EEeccccC
Confidence 88888874
No 30
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=57.21 E-value=49 Score=28.21 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCCeEeE-EEeCccCCCCeEEEeeeEE-CCCCCCcccceeeeEeecC-CCCCCcEEEEEEeccC
Q 043947 3 GRHDEVGI-EFLGTTFGKPYTLQTNVYI-RGSGDGEIIGREMKFHLWF-DPTKDFHHYAILWSPK 64 (187)
Q Consensus 3 ~~~dEIDi-E~lG~~~~~p~~vqtnv~~-~G~~~~~~~g~~~~~~l~f-d~s~dfH~Y~i~Wtp~ 64 (187)
..++|.|| |+|..... .+.+.+|. +|..+....+-... .| -|++..-+++|.++.+
T Consensus 149 sGCGEfDifEVl~~g~~---k~~St~H~~qG~~~~~~g~G~~~---yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 149 SGCGEFDIFEVLNSGDD---KLKSTFHDYQGTDDINGGGGSSD---YFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred CCcccceeeeeccCCCc---eeEEEEecccCccccCCCCCCCC---cccCCCCCCeEEEEEEcCC
Confidence 46899999 99976433 67777876 44321100000111 23 2777888888888654
No 31
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=57.10 E-value=1e+02 Score=24.95 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=44.8
Q ss_pred CCCcEEEEEEecc--CeeEEEECCEEEEEeeCCCCCCCCCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEE
Q 043947 51 TKDFHHYAILWSP--KELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKA 128 (187)
Q Consensus 51 s~dfH~Y~i~Wtp--~~I~fyVDg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v 128 (187)
...+|-+-+.|+. ..+.+||||+....-....+...|.... |+| |-+=-.-|| ..| ....|.-++.+|++
T Consensus 83 ~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~~~~g~~i~~gG~-~vl----GQeQd~~gG--~fd-~~q~F~G~i~~~~i 154 (195)
T PF00354_consen 83 DGQWHHICVTWDSSTGRWQLYVDGVRLSSTGLATGHSIPGGGT-LVL----GQEQDSYGG--GFD-ESQAFVGEISDFNI 154 (195)
T ss_dssp TSS-EEEEEEEETTTTEEEEEETTEEEEEEESSTT--B-SSEE-EEE----SS-BSBTTB--TCS-GGGB--EEEEEEEE
T ss_pred CCCcEEEEEEEecCCcEEEEEECCEecccccccCCceECCCCE-EEE----CccccccCC--CcC-CccEeeEEEeceEE
Confidence 4789999999998 6799999999554332222223332222 222 111112244 233 34679999999987
Q ss_pred EeeecCCCCcCCCCCCCCCCCCCCCHHHHHHHHH
Q 043947 129 CGCTAYAPAWCRPVSVSPFHSGGLSRQQYWAMRW 162 (187)
Q Consensus 129 ~~c~~~~~~~c~~~~~~~~~~~~l~~~~~~~~~~ 162 (187)
= .+.|++.++++|..
T Consensus 155 W-------------------d~vLs~~eI~~l~~ 169 (195)
T PF00354_consen 155 W-------------------DRVLSPEEIRALAS 169 (195)
T ss_dssp E-------------------SS---HHHHHHHHH
T ss_pred E-------------------eeeCCHHHHHHHHh
Confidence 2 35677777777654
No 32
>smart00282 LamG Laminin G domain.
Probab=46.79 E-value=1e+02 Score=22.41 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=23.1
Q ss_pred CCcEEEEEEeccCeeEEEECCEEEEEe
Q 043947 52 KDFHHYAILWSPKELIFLVDDVPIRRY 78 (187)
Q Consensus 52 ~dfH~Y~i~Wtp~~I~fyVDg~~vr~~ 78 (187)
..+|.=.|.-....+..+|||......
T Consensus 62 g~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 62 GQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCEEEEEEEEeCCEEEEEECCCccccE
Confidence 589999999999999999999754433
No 33
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=45.82 E-value=1.1e+02 Score=22.04 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=35.3
Q ss_pred CCCcEEEEEEeccCeeEEEECCE--EEEEeeCCCCCCCCCCcceEEEeeeec
Q 043947 51 TKDFHHYAILWSPKELIFLVDDV--PIRRYPRKSAATFPLRPMWVYGSIWDA 100 (187)
Q Consensus 51 s~dfH~Y~i~Wtp~~I~fyVDg~--~vr~~~~~~~~~~P~~Pm~l~lniW~g 100 (187)
..+|..|.|.|.-..|.+..||. |+.++.-. . |....++-++-|..
T Consensus 51 ~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp--~--~~~v~yvGft~w~~ 98 (102)
T PF12248_consen 51 PSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDP--E--PIPVNYVGFTGWGS 98 (102)
T ss_pred CCccEEEEEEECCCEEEEEECCCccEEEEEECC--C--CCcccEEEEecCCC
Confidence 57999999999999999999987 88777632 2 44556666666643
No 34
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=42.89 E-value=1.2e+02 Score=21.33 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=47.0
Q ss_pred CCCcEEEEEEeccCeeEEEECCEEEEEeeCCCCCCCCCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEEE
Q 043947 51 TKDFHHYAILWSPKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKAC 129 (187)
Q Consensus 51 s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 129 (187)
...||.-.|.=....+...||+............. .-+.....++.||.-..... ...=....|.--++++.|.
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~~---~~~~~~~~l~iGg~~~~~~~--~~~~~~~~f~Gci~~l~vn 126 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSSS---DSLDPDGSLYIGGLPESNQP--SGSVDTPGFVGCIRDLRVN 126 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTTH---HCBESEEEEEESSTTTTCTC--TTSSTTSB-EEEEEEEEET
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccce---ecccCCCCEEEecccCcccc--ccccCCCCcEEEcCeEEEC
Confidence 47899999999999999999999888776532110 02233455777875442111 1111156677777777765
No 35
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.70 E-value=59 Score=23.97 Aligned_cols=30 Identities=10% Similarity=0.074 Sum_probs=25.1
Q ss_pred CCCCcEEEEEEeccCeeEEEECCEEEEEeeC
Q 043947 50 PTKDFHHYAILWSPKELIFLVDDVPIRRYPR 80 (187)
Q Consensus 50 ~s~dfH~Y~i~Wtp~~I~fyVDg~~vr~~~~ 80 (187)
|.++-|++.+. .-+.++++|||++|-....
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~~ 86 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNWG 86 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECSC
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCCc
Confidence 46788999999 8889999999999976653
No 36
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=27.72 E-value=2.5e+02 Score=20.64 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCCeEeEEEeCc--cCCCCeEEEeeeEECC-C------CCCcccceeee-EeecCCCCCCcEEEEEEeccCeeEEEECCE
Q 043947 4 RHDEVGIEFLGT--TFGKPYTLQTNVYIRG-S------GDGEIIGREMK-FHLWFDPTKDFHHYAILWSPKELIFLVDDV 73 (187)
Q Consensus 4 ~~dEIDiE~lG~--~~~~p~~vqtnv~~~G-~------~~~~~~g~~~~-~~l~fd~s~dfH~Y~i~Wtp~~I~fyVDg~ 73 (187)
..+.+-|.++.. .......+|.|..-.. . -....+|.|++ ....|.+-.. -+-.|.=+++.+..+|||+
T Consensus 25 ~~~~f~inl~~~~~~~~~~i~lH~~~rf~~~~~iv~Ns~~~g~Wg~Ee~~~~~pf~~g~~-F~i~I~~~~~~f~I~vng~ 103 (133)
T PF00337_consen 25 DAKRFSINLQTGPNDPDDDIALHFNPRFDEQNVIVRNSRINGKWGQEERESPFPFQPGQP-FEIRIRVEEDGFKIYVNGK 103 (133)
T ss_dssp TSSBEEEEEEES-STTTTEEEEEEEEECTTEEEEEEEEEETTEE-SEEEESSTSSTTTSE-EEEEEEEESSEEEEEETTE
T ss_pred CCCEEEEEecCCCcCCCCCEEEEEEEEeCCCceEEEeceECCEeccceeeeeeeecCCce-EEEEEEEecCeeEEEECCe
Confidence 345556666654 2223446666665433 0 00012445666 3445655444 4777888899999999999
Q ss_pred EEEEeeC
Q 043947 74 PIRRYPR 80 (187)
Q Consensus 74 ~vr~~~~ 80 (187)
.+..+..
T Consensus 104 ~~~~F~~ 110 (133)
T PF00337_consen 104 HFCSFPH 110 (133)
T ss_dssp EEEEEE-
T ss_pred EEEEeeC
Confidence 9998874
No 37
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=26.24 E-value=3.5e+02 Score=22.23 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=39.4
Q ss_pred CCcEEEEEEec--cCeeEEEECCEEEEEeeCCCCCCCCCCcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEEEE
Q 043947 52 KDFHHYAILWS--PKELIFLVDDVPIRRYPRKSAATFPLRPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFKAC 129 (187)
Q Consensus 52 ~dfH~Y~i~Wt--p~~I~fyVDg~~vr~~~~~~~~~~P~~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~v~ 129 (187)
..||+=++.=. ..+..+||||.++.++.... ..|-. -|-=.=++-.|+. .++| -..-||.=.++++.|.
T Consensus 103 ~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~-~~Fis-~i~~~n~~~iG~t--~R~g-----~~~y~f~G~I~~l~iY 173 (190)
T PF02973_consen 103 VTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS-GNFIS-DIPGLNSVQIGGT--NRAG-----SNAYPFNGTIDNLKIY 173 (190)
T ss_dssp ES-EEEEEEEETTTTEEEEEETTCEEEEEEECT-SS-GG-GSTT--EEEESSE--EETT-----EEES--EEEEEEEEEE
T ss_pred ceEEEEEEEEecCCCeEEEEeCCeeEEEecccc-ccHhh-cCcCCceEEEcce--EeCC-----CceecccceEEEEEEE
Confidence 35787777765 67899999998888775432 22211 1100111222331 1223 2467899999999997
Q ss_pred eee
Q 043947 130 GCT 132 (187)
Q Consensus 130 ~c~ 132 (187)
.++
T Consensus 174 n~a 176 (190)
T PF02973_consen 174 NRA 176 (190)
T ss_dssp SS-
T ss_pred cCc
Confidence 553
No 38
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=23.86 E-value=43 Score=30.21 Aligned_cols=12 Identities=33% Similarity=0.817 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhC
Q 043947 155 QQYWAMRWLQSH 166 (187)
Q Consensus 155 ~~~~~~~~v~~~ 166 (187)
.|+.+|+|||+|
T Consensus 188 Dq~~AL~WV~~n 199 (535)
T PF00135_consen 188 DQRLALKWVQDN 199 (535)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhh
Confidence 589999999987
No 39
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=21.45 E-value=1.1e+02 Score=23.71 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=20.1
Q ss_pred CcceEEEeeeeccccCcCCCccccCCCCCCeEEEEeEEE
Q 043947 89 RPMWVYGSIWDASSWATEDGKYKADYRYQPFVARYTDFK 127 (187)
Q Consensus 89 ~Pm~l~lniW~gg~Wat~gG~~~~d~~~~Pf~a~~~~~~ 127 (187)
-||.+.++|..+ .|+ |+ ++...+=.|++++|+
T Consensus 154 ~P~~~~~~~~~~-~w~--~~----~~~~~~~~m~vDwvr 185 (185)
T PF00722_consen 154 YPFSTPMNLALG-LWP--GG----DWAGPAGEMEVDWVR 185 (185)
T ss_dssp SSEEEEEEEEEE-ECE--BT----TTHSSECEEEEEEEE
T ss_pred CcccceeEEEEc-ccc--CC----CCCCCCCEEEEEeEC
Confidence 377777788776 777 22 444444477777764
Done!