Query 043949
Match_columns 142
No_of_seqs 125 out of 571
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 09:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 98.3 6.3E-07 1.4E-11 48.0 3.5 21 69-89 1-21 (21)
2 KOG0160 Myosin class V heavy c 98.2 5.4E-06 1.2E-10 79.0 9.6 71 64-138 668-739 (862)
3 smart00015 IQ Short calmodulin 98.0 6.9E-06 1.5E-10 45.9 2.9 22 68-89 2-23 (26)
4 KOG0160 Myosin class V heavy c 97.9 6E-05 1.3E-09 72.1 9.6 71 61-134 688-758 (862)
5 KOG2128 Ras GTPase-activating 97.3 0.00072 1.6E-08 67.2 8.0 79 60-138 555-643 (1401)
6 PTZ00014 myosin-A; Provisional 97.3 0.00051 1.1E-08 65.5 6.8 40 70-109 778-818 (821)
7 KOG0520 Uncharacterized conser 97.3 0.00026 5.5E-09 68.4 3.9 72 68-139 809-888 (975)
8 PF00612 IQ: IQ calmodulin-bin 96.7 0.0022 4.8E-08 34.1 3.0 18 93-110 3-20 (21)
9 COG5022 Myosin heavy chain [Cy 96.5 0.0096 2.1E-07 59.8 8.1 72 66-138 742-814 (1463)
10 KOG0164 Myosin class I heavy c 96.0 0.04 8.7E-07 52.8 8.7 26 68-93 695-720 (1001)
11 PTZ00014 myosin-A; Provisional 95.6 0.039 8.4E-07 53.0 7.2 41 93-136 779-819 (821)
12 smart00015 IQ Short calmodulin 95.5 0.014 3E-07 32.3 2.5 19 92-110 4-22 (26)
13 KOG0520 Uncharacterized conser 95.0 0.056 1.2E-06 52.8 6.3 112 5-137 817-934 (975)
14 KOG2128 Ras GTPase-activating 94.9 0.045 9.6E-07 55.0 5.4 65 74-141 540-616 (1401)
15 KOG0942 E3 ubiquitin protein l 92.5 0.11 2.4E-06 50.6 3.3 27 64-90 24-50 (1001)
16 KOG0161 Myosin class II heavy 92.0 0.31 6.6E-06 50.9 5.8 42 93-134 775-816 (1930)
17 COG5022 Myosin heavy chain [Cy 89.0 2 4.4E-05 43.9 8.4 74 64-138 788-863 (1463)
18 KOG4427 E3 ubiquitin protein l 88.9 0.44 9.5E-06 46.3 3.7 25 66-90 27-51 (1096)
19 KOG0377 Protein serine/threoni 87.5 1.2 2.7E-05 41.0 5.4 36 65-100 13-48 (631)
20 KOG0162 Myosin class I heavy c 82.6 1.7 3.6E-05 42.4 4.1 40 69-111 696-736 (1106)
21 KOG0161 Myosin class II heavy 72.5 9.3 0.0002 40.5 6.3 43 67-109 771-817 (1930)
22 PF15157 IQ-like: IQ-like 70.3 3.5 7.5E-05 30.1 2.0 23 68-90 46-68 (97)
23 KOG0164 Myosin class I heavy c 70.0 9.7 0.00021 37.2 5.4 42 94-135 699-752 (1001)
24 KOG0942 E3 ubiquitin protein l 65.6 9.1 0.0002 37.9 4.3 25 91-115 29-53 (1001)
25 KOG0163 Myosin class VI heavy 61.7 15 0.00032 36.4 5.0 23 68-90 812-834 (1259)
26 KOG0163 Myosin class VI heavy 55.2 15 0.00032 36.4 3.8 23 93-115 815-837 (1259)
27 PF08763 Ca_chan_IQ: Voltage g 54.6 19 0.0004 21.9 2.9 21 69-89 9-29 (35)
28 KOG0165 Microtubule-associated 47.8 44 0.00095 33.1 5.6 44 65-108 939-983 (1023)
29 KOG4229 Myosin VII, myosin IXB 40.0 9.1 0.0002 38.3 -0.1 81 5-111 926-1009(1062)
30 KOG1419 Voltage-gated K+ chann 39.5 19 0.00042 34.1 1.9 19 68-86 339-357 (654)
31 KOG4427 E3 ubiquitin protein l 32.2 1E+02 0.0022 30.7 5.5 23 93-115 32-54 (1096)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.35 E-value=6.3e-07 Score=48.02 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHH
Q 043949 69 DSAAIKIQAIFRAHLARRAFK 89 (142)
Q Consensus 69 ~~AAi~IQa~~RG~l~Rk~y~ 89 (142)
+.||+.||+.||||++|++|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999985
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.25 E-value=5.4e-06 Score=79.04 Aligned_cols=71 Identities=30% Similarity=0.338 Sum_probs=57.9
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949 64 EIAKEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS 138 (142)
Q Consensus 64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~ 138 (142)
+......+++.||..+|||+.|+.|..++ .++.+|+++||+++|+.. . ...+++.||+.+|++..|+++..
T Consensus 668 R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r~~y~~ 739 (862)
T KOG0160|consen 668 RSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNRRRYRA 739 (862)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHHHHHHH
Confidence 34556678888999999999999999976 799999999999999922 2 45788888888888888877643
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.99 E-value=6.9e-06 Score=45.91 Aligned_cols=22 Identities=50% Similarity=0.608 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHhHHHHHHHHH
Q 043949 68 EDSAAIKIQAIFRAHLARRAFK 89 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~ 89 (142)
.+.+|+.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4689999999999999999984
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.92 E-value=6e-05 Score=72.07 Aligned_cols=71 Identities=30% Similarity=0.283 Sum_probs=61.4
Q ss_pred hHHHHHHHhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949 61 LKKEIAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS 134 (142)
Q Consensus 61 ~~~~~~~~~~AAi~IQa~~RG~l~Rk~y~~l~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr 134 (142)
.++.+.....+++.||+.+||++.|........++.+|..+|+++.|+.|.... ++++.||+.+|+..+|.
T Consensus 688 ~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 688 ARKKFLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 455688899999999999999999984443347999999999999999994444 99999999999999987
No 5
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=97.33 E-value=0.00072 Score=67.19 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=61.1
Q ss_pred chHHHHHH-HhHHHHHHHHHHhHHHH---HHHHHh--HHHHHHHHHHhhhHHHHHHHHHHHH----HHhHHHHHHHHHHH
Q 043949 60 PLKKEIAK-EDSAAIKIQAIFRAHLA---RRAFKA--LRSLVKLQALVRGVCVRRQSRVAMH----AMHALVRLQVRIRA 129 (142)
Q Consensus 60 ~~~~~~~~-~~~AAi~IQa~~RG~l~---Rk~y~~--l~~iv~LQa~iRG~laRr~~~~~l~----~~~aav~IQa~vRg 129 (142)
+....++. .....+.||++|||+++ +-.|.. ...++.+|++.||+++|+.+...+. ++.++++||+.+|+
T Consensus 555 ~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~ 634 (1401)
T KOG2128|consen 555 RSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRK 634 (1401)
T ss_pred HhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 33344555 78899999999999996 111222 3379999999999999998875444 35899999999999
Q ss_pred HHhhhhhhh
Q 043949 130 RQLLSRQAS 138 (142)
Q Consensus 130 ~~aRr~~~~ 138 (142)
+..|..+..
T Consensus 635 f~~r~~y~~ 643 (1401)
T KOG2128|consen 635 FPNRKDYKL 643 (1401)
T ss_pred cccchHHHH
Confidence 999987754
No 6
>PTZ00014 myosin-A; Provisional
Probab=97.33 E-value=0.00051 Score=65.49 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHH
Q 043949 70 SAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQ 109 (142)
Q Consensus 70 ~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~ 109 (142)
..++.||++||||++|+.|..+. +++.||+.+||+++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999855 88999999999998875
No 7
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.25 E-value=0.00026 Score=68.44 Aligned_cols=72 Identities=31% Similarity=0.316 Sum_probs=60.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHhhhhhhhh
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMH-------AMHALVRLQVRIRARQLLSRQASQ 139 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~-------~~~aav~IQa~vRg~~aRr~~~~~ 139 (142)
...||..||..++||+.|+.|...+ .+|++|+.+||+.+|++|..... -+-+|-.+|+.+||+..+.-.+++
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~ 888 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQ 888 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhcc
Confidence 3468999999999999999999977 89999999999999999973322 247888999999999887765543
No 8
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.72 E-value=0.0022 Score=34.05 Aligned_cols=18 Identities=22% Similarity=0.384 Sum_probs=12.2
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 043949 93 SLVKLQALVRGVCVRRQS 110 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~ 110 (142)
+++.||+.+||+++|++|
T Consensus 3 aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 466677777777777665
No 9
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=96.53 E-value=0.0096 Score=59.80 Aligned_cols=72 Identities=25% Similarity=0.326 Sum_probs=57.0
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHh-HHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949 66 AKEDSAAIKIQAIFRAHLARRAFKA-LRSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS 138 (142)
Q Consensus 66 ~~~~~AAi~IQa~~RG~l~Rk~y~~-l~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~ 138 (142)
..-...++.||++|||+..|++|.. .+.+..+|...+|.+.++.+..-. ....+++||..++....|..+-+
T Consensus 742 ~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~r~~~~~ 814 (1463)
T COG5022 742 AKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYEL-KWRLFIKLQPLLSLLGSRKEYRS 814 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccch-HHHhHHHhhHHhHHHhhHHHHHH
Confidence 3356789999999999999999988 558888899999999997664222 24788888888888887776544
No 10
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=95.96 E-value=0.04 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhHHH
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKALRS 93 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~l~~ 93 (142)
--.-|+.||++|||+++|.+|+.++.
T Consensus 695 l~~lvtllQK~~RG~~~R~ry~rmka 720 (1001)
T KOG0164|consen 695 LPSLVTLLQKAWRGWLARQRYRRMKA 720 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999774
No 11
>PTZ00014 myosin-A; Provisional
Probab=95.60 E-value=0.039 Score=52.96 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ 136 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~ 136 (142)
.++.||+.+||+++|+.|... ..+++.||+.+|++..++.+
T Consensus 779 ~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 477899999999999999544 48999999999999998765
No 12
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.54 E-value=0.014 Score=32.30 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.4
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 043949 92 RSLVKLQALVRGVCVRRQS 110 (142)
Q Consensus 92 ~~iv~LQa~iRG~laRr~~ 110 (142)
..++.||+.+||+++|+.|
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3578888888888888877
No 13
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.00 E-value=0.056 Score=52.76 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=64.0
Q ss_pred hhhHHHH--HHHHHHhcccceeeecCCCCCCCccccCCcccccccccCccccccccc-c-hHHHHHHHhHHHHHHHHHHh
Q 043949 5 SNWFNVL--RRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLL-P-LKKEIAKEDSAAIKIQAIFR 80 (142)
Q Consensus 5 ~~Wf~~~--rr~f~r~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~AAi~IQa~~R 80 (142)
|+||+.- |+.||-+++..|.|+++ .+.+.+..+-.. + .+...++---++-.+|+++|
T Consensus 817 q~~f~~yk~r~~~l~tr~p~v~iqa~-------------------~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~R 877 (975)
T KOG0520|consen 817 QKKFRGYKQRKEFLSTRQPIVKIQAA-------------------VRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFR 877 (975)
T ss_pred hhhhhhHHhhhhhcccCCccccchhh-------------------hhchhHhhhhheechhhhHHHHHHHHHHHhhhhhc
Confidence 6788766 88899999998888864 222211111000 0 11233444556777777777
Q ss_pred HHHHHHHHHhHH-HHHHHHHHhhhHHHH-HHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 043949 81 AHLARRAFKALR-SLVKLQALVRGVCVR-RQSRVAMHAMHALVRLQVRIRARQLLSRQA 137 (142)
Q Consensus 81 G~l~Rk~y~~l~-~iv~LQa~iRG~laR-r~~~~~l~~~~aav~IQa~vRg~~aRr~~~ 137 (142)
||..|....... ..+.+|...+=|-.= +++.+.+ -.|++.||+.+|...++..+-
T Consensus 878 gfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~--~~A~~~VQsm~rs~~a~qqyr 934 (975)
T KOG0520|consen 878 GFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERL--TRAVVRVQSMFRSPKAQQQYR 934 (975)
T ss_pred ccccccchhccccccchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHH
Confidence 777776665533 344555555444332 2333333 277788888887777765443
No 14
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=94.90 E-value=0.045 Score=55.00 Aligned_cols=65 Identities=28% Similarity=0.302 Sum_probs=52.4
Q ss_pred HHHHHHhHHHHHHHHHhHH--------HHHHHHHHhhhHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhhhhhhc
Q 043949 74 KIQAIFRAHLARRAFKALR--------SLVKLQALVRGVCVRRQSRVA----MHAMHALVRLQVRIRARQLLSRQASQLE 141 (142)
Q Consensus 74 ~IQa~~RG~l~Rk~y~~l~--------~iv~LQa~iRG~laRr~~~~~----l~~~~aav~IQa~vRg~~aRr~~~~~~~ 141 (142)
+||+..||+..|..+.... .++.+|+++||++. |... .....-++++|+..||..+|+..++.++
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q 616 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQ 616 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3499999999999887722 69999999999997 3322 2224889999999999999999887664
No 15
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.11 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.3
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHh
Q 043949 64 EIAKEDSAAIKIQAIFRAHLARRAFKA 90 (142)
Q Consensus 64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~ 90 (142)
+..+++++|+++|+.||||++|++.+.
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999998666
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.96 E-value=0.31 Score=50.86 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=36.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS 134 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr 134 (142)
-|+.|||.||||++|+.|........++..||.-+|.++..+
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr 816 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLR 816 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 388889999999999999888888899999999999986543
No 17
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=89.01 E-value=2 Score=43.87 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=54.9
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHH-HHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949 64 EIAKEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQ-ALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS 138 (142)
Q Consensus 64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQ-a~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~ 138 (142)
+......+++.||..|+.+..|+.|+... -|..|| .+.+....+-.. +....+++.+.+|+++|...+.++...
T Consensus 788 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~~~kr~~~ 863 (1463)
T COG5022 788 DYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLKAKKRFSL 863 (1463)
T ss_pred ccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 45567789999999999999999999944 688888 444444444432 233335888999999999888887654
No 18
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.95 E-value=0.44 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.2
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHHh
Q 043949 66 AKEDSAAIKIQAIFRAHLARRAFKA 90 (142)
Q Consensus 66 ~~~~~AAi~IQa~~RG~l~Rk~y~~ 90 (142)
.+++.||+.||+.||||++|+++..
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999876
No 19
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=87.48 E-value=1.2 Score=41.03 Aligned_cols=36 Identities=28% Similarity=0.192 Sum_probs=28.8
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 043949 65 IAKEDSAAIKIQAIFRAHLARRAFKALRSLVKLQAL 100 (142)
Q Consensus 65 ~~~~~~AAi~IQa~~RG~l~Rk~y~~l~~iv~LQa~ 100 (142)
..+.-+||+.||.++|+|.+|.+-+..-.-..+|++
T Consensus 13 s~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 13 STRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 455679999999999999999998776555556654
No 20
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=82.60 E-value=1.7 Score=42.40 Aligned_cols=40 Identities=35% Similarity=0.514 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHH
Q 043949 69 DSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSR 111 (142)
Q Consensus 69 ~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~ 111 (142)
+.-|.+||.+||.|++|++|..++ ...+ ++-|-..|+.+.
T Consensus 696 d~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~S 736 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRYS 736 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHHH
Confidence 457899999999999999999977 2332 234556666654
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.47 E-value=9.3 Score=40.45 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHHH
Q 043949 67 KEDSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQ 109 (142)
Q Consensus 67 ~~~~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr~ 109 (142)
.-..-++.+|+.+|||++|+.|.... +|..||.=+|-++.-+.
T Consensus 771 ~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 771 KLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34567788999999999999998833 79999999998876664
No 22
>PF15157 IQ-like: IQ-like
Probab=70.29 E-value=3.5 Score=30.12 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=18.7
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHh
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKA 90 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~ 90 (142)
-+.-+..||.+||-|++|.....
T Consensus 46 Leskvkiiqrawre~lq~qd~~~ 68 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPLE 68 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcc
Confidence 45667889999999999987544
No 23
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=70.03 E-value=9.7 Score=37.23 Aligned_cols=42 Identities=24% Similarity=0.205 Sum_probs=27.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH------H------HhHHHHHHHHHHHHHhhhh
Q 043949 94 LVKLQALVRGVCVRRQSRVAMH------A------MHALVRLQVRIRARQLLSR 135 (142)
Q Consensus 94 iv~LQa~iRG~laRr~~~~~l~------~------~~aav~IQa~vRg~~aRr~ 135 (142)
++.||..+||.++|.+|..... . -..+-.||..+||...++-
T Consensus 699 vtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~ks~v~el~~~~rg~k~~r~ 752 (1001)
T KOG0164|consen 699 VTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLKSYVQELQRRFRGAKQMRD 752 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 7778999999999999842211 0 0344556666666665543
No 24
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=9.1 Score=37.89 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 043949 91 LRSLVKLQALVRGVCVRRQSRVAMH 115 (142)
Q Consensus 91 l~~iv~LQa~iRG~laRr~~~~~l~ 115 (142)
.+++|.+|+++||+.+|++.....+
T Consensus 29 e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 29 EKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888887654443
No 25
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=61.72 E-value=15 Score=36.35 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHh
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKA 90 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~ 90 (142)
+..+++++|+..|||++|+++..
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ 834 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRP 834 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhch
Confidence 44556666666666666666554
No 26
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=55.21 E-value=15 Score=36.36 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMH 115 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~ 115 (142)
.++++|+.+||||+|+++...+.
T Consensus 815 ~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 815 CVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred HHHHHHHHHHHHHHHhhhchHHH
Confidence 38888999999999998764443
No 27
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=54.55 E-value=19 Score=21.94 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHH
Q 043949 69 DSAAIKIQAIFRAHLARRAFK 89 (142)
Q Consensus 69 ~~AAi~IQa~~RG~l~Rk~y~ 89 (142)
--|+..||-.||-+..|+.-.
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999998643
No 28
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=47.76 E-value=44 Score=33.06 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHh-HHHHHHHHHHhhhHHHHH
Q 043949 65 IAKEDSAAIKIQAIFRAHLARRAFKA-LRSLVKLQALVRGVCVRR 108 (142)
Q Consensus 65 ~~~~~~AAi~IQa~~RG~l~Rk~y~~-l~~iv~LQa~iRG~laRr 108 (142)
++...+||+.||.+.||+.+|+.++. ...|-++.+++.-.++..
T Consensus 939 lenkKkaavviqkmirgfiarrkfqmeisniRnrmiqynhilaqe 983 (1023)
T KOG0165|consen 939 LENKKKAAVVIQKMIRGFIARRKFQMEISNIRNRMIQYNHILAQE 983 (1023)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56678999999999999999999988 335656666655555543
No 29
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=39.97 E-value=9.1 Score=38.30 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=58.1
Q ss_pred hhhHHHH--HHHHHHhcccceeeecCCCCCCCccccCCcccccccccCcccccccccchHHHHHHHhHHHHHHHHHHhHH
Q 043949 5 SNWFNVL--RRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLPLKKEIAKEDSAAIKIQAIFRAH 82 (142)
Q Consensus 5 ~~Wf~~~--rr~f~r~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AAi~IQa~~RG~ 82 (142)
|+||+.+ +..+++++++.++++.- +..... +.|. ......+|+-+|.+|+.|
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~ 979 (1062)
T KOG4229|consen 926 QKWFRLTLERKGLLRLSEGSVLIQRL-----ELLGRR------------------TCPV---AGAPAVAAASLQNAWPVY 979 (1062)
T ss_pred HHHHHhhhccccchhhcchhHHHHHH-----HHhccc------------------CCcc---hhhhhhhhhhccccchhh
Confidence 6899987 77799999999988731 000000 0010 344568899999999999
Q ss_pred HHHHHHHhHH-HHHHHHHHhhhHHHHHHHH
Q 043949 83 LARRAFKALR-SLVKLQALVRGVCVRRQSR 111 (142)
Q Consensus 83 l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~ 111 (142)
..+..+...+ +.+.+|...++...+..+.
T Consensus 980 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 1009 (1062)
T KOG4229|consen 980 RELSGRLGLRRSFIADQSPRSRPAYTMIFA 1009 (1062)
T ss_pred hhhhhhHHHhhhhcchhcccccchhhhhHH
Confidence 9999888844 7888888888888877664
No 30
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=39.49 E-value=19 Score=34.09 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHHhHHHHHH
Q 043949 68 EDSAAIKIQAIFRAHLARR 86 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk 86 (142)
+..||..||.+||-|.+=.
T Consensus 339 r~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 339 RNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred cchHHHHHHHHHHHHhccc
Confidence 5689999999999998765
No 31
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.21 E-value=1e+02 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMH 115 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~ 115 (142)
..+.||+.+|||++|++++..+.
T Consensus 32 aa~~iq~~lrsyl~Rkk~~~~I~ 54 (1096)
T KOG4427|consen 32 AALFIQRVLRSYLVRKKAQIEIQ 54 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999975554
Done!