Query 043949
Match_columns 142
No_of_seqs 125 out of 571
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 17:06:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 99.4 1.7E-13 5.8E-18 130.1 7.9 104 5-137 775-884 (1080)
2 2ix7_C Myosin-5A; contractIle 99.4 1.5E-12 5.2E-17 83.9 7.5 54 67-121 3-57 (58)
3 2dfs_A Myosin-5A; myosin-V, in 99.2 1.8E-10 6.1E-15 109.5 11.6 70 68-138 767-837 (1080)
4 1n2d_C IQ2 and IQ3 motifs from 99.1 1.1E-10 3.8E-15 72.4 6.5 42 69-110 3-47 (48)
5 1n2d_C IQ2 and IQ3 motifs from 98.9 7.7E-09 2.6E-13 63.9 6.8 44 92-136 4-47 (48)
6 2ix7_C Myosin-5A; contractIle 98.5 2.1E-07 7.3E-12 59.5 6.2 45 92-139 6-50 (58)
7 1wdc_A Scallop myosin; calcium 98.2 3.6E-06 1.2E-10 54.9 6.3 39 70-108 7-49 (64)
8 2bl0_A Major plasmodial myosin 98.2 3.1E-06 1.1E-10 55.2 5.8 41 94-134 7-47 (63)
9 1wdc_A Scallop myosin; calcium 97.8 5.5E-05 1.9E-09 49.2 6.6 42 93-134 8-49 (64)
10 2bl0_A Major plasmodial myosin 97.8 4E-05 1.4E-09 49.8 5.2 42 69-110 4-49 (63)
11 1kk8_A Myosin heavy chain, str 97.6 8.7E-05 3E-09 69.3 7.2 43 68-110 778-824 (837)
12 2kxw_B Sodium channel protein 97.6 5.5E-05 1.9E-09 42.7 3.1 22 66-87 3-24 (27)
13 2l53_B CAM, voltage-gated sodi 97.6 6.4E-05 2.2E-09 43.8 3.5 24 66-89 3-26 (31)
14 1kk8_A Myosin heavy chain, str 97.2 0.0009 3.1E-08 62.5 8.4 44 93-136 781-824 (837)
15 1i84_S Smooth muscle myosin he 97.0 0.00078 2.7E-08 64.2 6.4 42 68-109 791-836 (1184)
16 1i84_S Smooth muscle myosin he 96.6 0.0052 1.8E-07 58.6 8.1 43 93-135 794-836 (1184)
17 3gn4_A Myosin-VI; unconvention 96.0 0.016 5.4E-07 44.3 6.2 38 64-101 40-78 (148)
18 4dck_A Sodium channel protein 94.1 0.061 2.1E-06 41.6 4.7 27 64-90 125-151 (168)
19 1w7j_A Myosin VA; motor protei 93.7 0.063 2.1E-06 49.9 4.9 25 68-92 767-791 (795)
20 4anj_A Unconventional myosin-V 89.9 0.69 2.3E-05 44.3 7.2 41 69-110 775-816 (1052)
21 3gn4_A Myosin-VI; unconvention 88.6 0.52 1.8E-05 35.8 4.4 23 93-115 47-69 (148)
22 2kxw_B Sodium channel protein 87.7 0.54 1.9E-05 26.1 3.0 20 116-135 5-24 (27)
23 2l53_B CAM, voltage-gated sodi 87.0 0.64 2.2E-05 26.7 3.1 21 116-136 5-25 (31)
24 4anj_A Unconventional myosin-V 84.6 1.7 5.9E-05 41.6 6.6 42 92-136 775-816 (1052)
25 1w7j_A Myosin VA; motor protei 67.1 7.1 0.00024 36.3 5.3 18 93-110 770-787 (795)
26 3dvk_B Voltage-dependent R-typ 44.0 11 0.00036 20.2 1.4 16 70-85 7-22 (23)
27 4dck_A Sodium channel protein 40.5 28 0.00095 26.6 3.8 22 115-136 128-149 (168)
28 3bxl_B CAM, voltage-dependent 37.6 28 0.00095 19.1 2.5 18 70-87 3-20 (26)
29 1g4y_B Calcium-activated potas 32.7 1.3E+02 0.0045 21.3 7.6 32 52-87 16-47 (101)
30 2f3y_B Voltage-dependent L-typ 27.6 46 0.0016 18.2 2.3 18 71-88 4-21 (26)
31 2be6_D Voltage-dependent L-typ 25.8 65 0.0022 19.0 2.9 19 70-88 12-30 (37)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.43 E-value=1.7e-13 Score=130.08 Aligned_cols=104 Identities=25% Similarity=0.338 Sum_probs=79.8
Q ss_pred hhhHHHH--HHHHHHhcccceeeecCCCCCCCccccCCcccccccccCcccccccccchHH---HHHHHhHHHHHHHHHH
Q 043949 5 SNWFNVL--RRKVHRKSHRDITIRHSPTPSQGATIRKVPEEAANCIDNNTFVSSTLLPLKK---EIAKEDSAAIKIQAIF 79 (142)
Q Consensus 5 ~~Wf~~~--rr~f~r~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~AAi~IQa~~ 79 (142)
|+|+|.- |++|.+++.++++||+. |+.+ ..+ +..++..||+.||++|
T Consensus 775 Qa~~Rg~l~Rk~~~~~r~aai~IQ~~-------------------~Rg~---------~aR~~~~~lr~~~AAi~IQs~~ 826 (1080)
T 2dfs_A 775 QKTIRGWLMRKKYMRMRRAAITIQRY-------------------VRGH---------QARCYATFLRRTRAAIIIQKFQ 826 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH-------------------HHHH---------HHhhcccccccchhHHHHHHHH
Confidence 5566554 88899999999999996 6664 111 2345789999999999
Q ss_pred hHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 043949 80 RAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQA 137 (142)
Q Consensus 80 RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~ 137 (142)
|||++|+.|..++ +++.||+.+||+++|+.+.. +....+++.||+.|||+.+|+.+.
T Consensus 827 Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~y~ 884 (1080)
T 2dfs_A 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVHYH 884 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999966 89999999999999998853 333456666666666666665543
No 2
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.38 E-value=1.5e-12 Score=83.93 Aligned_cols=54 Identities=26% Similarity=0.410 Sum_probs=46.2
Q ss_pred HHhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHH
Q 043949 67 KEDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALV 121 (142)
Q Consensus 67 ~~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav 121 (142)
..+.||+.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. +...++|+
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA~ 57 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCcc
Confidence 46789999999999999999999977 89999999999999999954 44445543
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.15 E-value=1.8e-10 Score=109.50 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=58.7
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQAS 138 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~ 138 (142)
...+|+.||++||||++|+.|..++ +++.||+.+||+++|+.+. .+....||+.||+.|||+.+|+.+..
T Consensus 767 l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y~~ 837 (1080)
T 2dfs_A 767 LRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRYQC 837 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHHHH
Confidence 3679999999999999999999976 8899999999999999884 34456788888888888888876543
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.1e-10 Score=72.35 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHH---HHHHHHHHhhhHHHHHHH
Q 043949 69 DSAAIKIQAIFRAHLARRAFKALR---SLVKLQALVRGVCVRRQS 110 (142)
Q Consensus 69 ~~AAi~IQa~~RG~l~Rk~y~~l~---~iv~LQa~iRG~laRr~~ 110 (142)
..||+.||+.||||++|+.|..++ +++.||+.+||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 368899999999999999988754 677777777777777765
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.86 E-value=7.7e-09 Score=63.92 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949 92 RSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ 136 (142)
Q Consensus 92 ~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~ 136 (142)
.+++.||+.+||+++|+.+.. +....++++||+.|||+.+|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence 478999999999999999944 44567999999999999999864
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.52 E-value=2.1e-07 Score=59.50 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhh
Q 043949 92 RSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQASQ 139 (142)
Q Consensus 92 ~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~~~~ 139 (142)
..++.||+.+||+++|+.|... ..+++.||+.|||+.+|+.+...
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~~---r~aai~IQ~~~Rg~~aR~~~~~~ 50 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLCM---QRAAITVQRYVRGYQARCYAKFL 50 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999443 38999999999999999987653
No 7
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=98.20 E-value=3.6e-06 Score=54.94 Aligned_cols=39 Identities=33% Similarity=0.358 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHH
Q 043949 70 SAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRR 108 (142)
Q Consensus 70 ~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr 108 (142)
..++.||+.+|||++|+.|..+. ++..||.-+|+++..+
T Consensus 7 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 7 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555554431 3334455555444444
No 8
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=98.19 E-value=3.1e-06 Score=55.15 Aligned_cols=41 Identities=27% Similarity=0.187 Sum_probs=23.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949 94 LVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS 134 (142)
Q Consensus 94 iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr 134 (142)
++.||+.+||+++|+.|...+....|+..||..+|++..++
T Consensus 7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556666666666666554444455556666666665543
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.83 E-value=5.5e-05 Score=49.22 Aligned_cols=42 Identities=24% Similarity=0.280 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLS 134 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr 134 (142)
.++.|||.+||+++|+.|...+....|+..||..+|++..++
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999887777788889999999998875
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.77 E-value=4e-05 Score=49.80 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHHHH
Q 043949 69 DSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQS 110 (142)
Q Consensus 69 ~~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr~~ 110 (142)
...++.||+.+|||++|+.|..+. ++..||.-+|+++.++..
T Consensus 4 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 4 GEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 467899999999999999999963 677999999999998753
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.64 E-value=8.7e-05 Score=69.30 Aligned_cols=43 Identities=30% Similarity=0.257 Sum_probs=36.1
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhH----HHHHHHHHHhhhHHHHHHH
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKAL----RSLVKLQALVRGVCVRRQS 110 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~l----~~iv~LQa~iRG~laRr~~ 110 (142)
-..+|+.||++||||++|+.|..+ .+++.||+.+||+++++.+
T Consensus 778 l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 778 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 446788999999999999999886 3788889999999988865
No 12
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=97.58 E-value=5.5e-05 Score=42.75 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHhHHHHHHH
Q 043949 66 AKEDSAAIKIQAIFRAHLARRA 87 (142)
Q Consensus 66 ~~~~~AAi~IQa~~RG~l~Rk~ 87 (142)
.+++.||+.||.+||+|+.++.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999998753
No 13
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=97.58 E-value=6.4e-05 Score=43.77 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=20.5
Q ss_pred HHHhHHHHHHHHHHhHHHHHHHHH
Q 043949 66 AKEDSAAIKIQAIFRAHLARRAFK 89 (142)
Q Consensus 66 ~~~~~AAi~IQa~~RG~l~Rk~y~ 89 (142)
.+++.||+.||.+||+|+.|+...
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhc
Confidence 357899999999999999997643
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.21 E-value=0.0009 Score=62.49 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ 136 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~ 136 (142)
.++.||+.+||+++|++|...+....|++.||+.+|++..++..
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 58899999999999999976665668999999999999998753
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.05 E-value=0.00078 Score=64.21 Aligned_cols=42 Identities=31% Similarity=0.286 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhHH----HHHHHHHHhhhHHHHHH
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKALR----SLVKLQALVRGVCVRRQ 109 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~l~----~iv~LQa~iRG~laRr~ 109 (142)
-..+|+.||++||||++|+.|..++ +++.||+.+|||+.++.
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3468999999999999999999853 79999999999999975
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.59 E-value=0.0052 Score=58.59 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSR 135 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~ 135 (142)
.++.||+.+||+++|+.|........+++.||+.||++..++.
T Consensus 794 ~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~ 836 (1184)
T 1i84_S 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXH 836 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5889999999999999997766667899999999999999865
No 17
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=95.95 E-value=0.016 Score=44.26 Aligned_cols=38 Identities=34% Similarity=0.426 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHhH-HHHHHHHHHh
Q 043949 64 EIAKEDSAAIKIQAIFRAHLARRAFKAL-RSLVKLQALV 101 (142)
Q Consensus 64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~l-~~iv~LQa~i 101 (142)
...-+..|++.||+.+|||++|+.++.. .++.++-++-
T Consensus 40 KI~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 40 KIKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3555788999999999999999999884 4665554443
No 18
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=94.11 E-value=0.061 Score=41.63 Aligned_cols=27 Identities=37% Similarity=0.552 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHHHHHHhHHHHHHHHHh
Q 043949 64 EIAKEDSAAIKIQAIFRAHLARRAFKA 90 (142)
Q Consensus 64 ~~~~~~~AAi~IQa~~RG~l~Rk~y~~ 90 (142)
....+..||+.||.+||.|+.|+.+++
T Consensus 125 ~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 125 RRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 456789999999999999999988776
No 19
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=93.74 E-value=0.063 Score=49.93 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHhHHHHHHHHHhHH
Q 043949 68 EDSAAIKIQAIFRAHLARRAFKALR 92 (142)
Q Consensus 68 ~~~AAi~IQa~~RG~l~Rk~y~~l~ 92 (142)
...+|+.||++||||++|++|+.++
T Consensus 767 l~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 767 LRAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999998866
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=89.91 E-value=0.69 Score=44.35 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHHhhhHHHHHHH
Q 043949 69 DSAAIKIQAIFRAHLARRAFKALR-SLVKLQALVRGVCVRRQS 110 (142)
Q Consensus 69 ~~AAi~IQa~~RG~l~Rk~y~~l~-~iv~LQa~iRG~laRr~~ 110 (142)
..+|+.||. +|||++|++|+.++ .++.+|.+.|+...|+..
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777774 79999999999876 778888888887766654
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=88.65 E-value=0.52 Score=35.83 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHH
Q 043949 93 SLVKLQALVRGVCVRRQSRVAMH 115 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~~~~l~ 115 (142)
.++.+|+.+||||+|+++.-.+.
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~ 69 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRID 69 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH
Confidence 48888999999999998865443
No 22
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=87.67 E-value=0.54 Score=26.12 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHHHHHHhhhh
Q 043949 116 AMHALVRLQVRIRARQLLSR 135 (142)
Q Consensus 116 ~~~aav~IQa~vRg~~aRr~ 135 (142)
+..+|+.||..||++..++.
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999988753
No 23
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=87.04 E-value=0.64 Score=26.69 Aligned_cols=21 Identities=14% Similarity=0.048 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHHHHHHhhhhh
Q 043949 116 AMHALVRLQVRIRARQLLSRQ 136 (142)
Q Consensus 116 ~~~aav~IQa~vRg~~aRr~~ 136 (142)
+.-+|+.||..||++..++..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999987643
No 24
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=84.60 E-value=1.7 Score=41.62 Aligned_cols=42 Identities=7% Similarity=-0.040 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 043949 92 RSLVKLQALVRGVCVRRQSRVAMHAMHALVRLQVRIRARQLLSRQ 136 (142)
Q Consensus 92 ~~iv~LQa~iRG~laRr~~~~~l~~~~aav~IQa~vRg~~aRr~~ 136 (142)
..++.+|..+||+++|++|.. + ..+++.||...|+.+.|+..
T Consensus 775 ~~~~~~iq~~r~~l~r~~~~k-~--~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 775 DHLAELVKRVNHWLICSRWKK-V--QWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHc
Confidence 345556667899999999943 3 37889999988888877654
No 25
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=67.07 E-value=7.1 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 043949 93 SLVKLQALVRGVCVRRQS 110 (142)
Q Consensus 93 ~iv~LQa~iRG~laRr~~ 110 (142)
.++.||+.+||+++|++|
T Consensus 770 ~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 770 ACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355556666666665555
No 26
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=44.01 E-value=11 Score=20.21 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHH
Q 043949 70 SAAIKIQAIFRAHLAR 85 (142)
Q Consensus 70 ~AAi~IQa~~RG~l~R 85 (142)
-|+..||-.||-+..|
T Consensus 7 YA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 7 YAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5889999999988765
No 27
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=40.49 E-value=28 Score=26.56 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=17.9
Q ss_pred HHHhHHHHHHHHHHHHHhhhhh
Q 043949 115 HAMHALVRLQVRIRARQLLSRQ 136 (142)
Q Consensus 115 ~~~~aav~IQa~vRg~~aRr~~ 136 (142)
.+..||+.||.++|.+..|+.+
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~ 149 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSL 149 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4458999999999999887765
No 28
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=37.57 E-value=28 Score=19.09 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 043949 70 SAAIKIQAIFRAHLARRA 87 (142)
Q Consensus 70 ~AAi~IQa~~RG~l~Rk~ 87 (142)
-||..|+-.||-+..++.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 489999999999998876
No 29
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D
Probab=32.74 E-value=1.3e+02 Score=21.25 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=23.1
Q ss_pred ccccccccchHHHHHHHhHHHHHHHHHHhHHHHHHH
Q 043949 52 TFVSSTLLPLKKEIAKEDSAAIKIQAIFRAHLARRA 87 (142)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~AAi~IQa~~RG~l~Rk~ 87 (142)
.||+++.+. ...++.||-++|-.|.-|...+-
T Consensus 16 nFMmD~qlt----k~~K~aAAnVLrEtWliyK~tkl 47 (101)
T 1g4y_B 16 NFMMDTQLT----KRVKNAAANVLRETWLIYKNTKL 47 (101)
T ss_dssp ----CHHHH----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhHHh----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 478888655 35688999999999999998873
No 30
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=27.65 E-value=46 Score=18.18 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 043949 71 AAIKIQAIFRAHLARRAF 88 (142)
Q Consensus 71 AAi~IQa~~RG~l~Rk~y 88 (142)
|...||-.||.+..|++-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 456799999999988764
No 31
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=25.78 E-value=65 Score=18.96 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 043949 70 SAAIKIQAIFRAHLARRAF 88 (142)
Q Consensus 70 ~AAi~IQa~~RG~l~Rk~y 88 (142)
-|-..||-.||.+..|++-
T Consensus 12 YatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 12 YATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999874
Done!