BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043950
(458 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/445 (75%), Positives = 380/445 (85%), Gaps = 4/445 (0%)
Query: 2 LQSQRFLPSAPRPSLNLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED 61
LQ+Q +P++ + + KLE LPAM+ GV+SDDN+LQLEATTQFR LLSIERSP IE+
Sbjct: 55 LQAQAPVPASA--ATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEE 112
Query: 62 VIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP 121
VIQ+GVVPRFV+FL RED+PQLQ+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL S
Sbjct: 113 VIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS 172
Query: 122 SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181
SDDVREQAVWALGNVA DSP CR+LVL AL+PLLAQLNEH KLSMLR ATWTLS C+
Sbjct: 173 SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232
Query: 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241
GKPQP F+Q RPALPALA+LIH +DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLV
Sbjct: 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 292
Query: 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
ELL HPSPSVL PAL TVGNIV GDD QTQCII+H A+PCLL+LL N KKSIKK ACWT
Sbjct: 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352
Query: 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361
ISNITAGN++QIQAVI+AG+I PLVN+LQ AEFDIKKEAA AI+NAT G+H+QIKYLV
Sbjct: 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412
Query: 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK 421
EGCIKPLCDLL+C D +IVTVCLEGLENILKVGE +K + GDVN ++++++E EG +
Sbjct: 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 470
Query: 422 KIEGLKSHDNNGIREKAVKILETYW 446
KIE L+SHDNN I EKAVKILE YW
Sbjct: 471 KIENLQSHDNNEIYEKAVKILEAYW 495
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/422 (77%), Positives = 367/422 (86%), Gaps = 2/422 (0%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
LPAM+ GV+SDDN+LQLEATTQFR LLSIERSP IE+VIQ+GVVPRFV+FL RED+PQLQ
Sbjct: 38 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 85 YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
+EAAWALTNIASGTS NT VVIDHGAVPIFVKLL S SDDVREQAVWALGNVA DSP CR
Sbjct: 98 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL 204
+LVL AL+PLLAQLNEH KLSMLR ATWTLS C+GKPQP F+Q RPALPALA+LIH
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264
+DEEVL+DACW LSYLS GTNDKIQ VIEAGVC RLVELL HPSPSVL PAL TVGNIV
Sbjct: 218 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 277
Query: 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVP 324
GDD QTQCII+H A+PCLL+LL N KKSIKK ACWTISNITAGN++QIQAVI+AG+I P
Sbjct: 278 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 337
Query: 325 LVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCL 384
LVN+LQ AEFDIKKEAA AI+NAT G+H+QIKYLV EGCIKPLCDLL+C D +IVTVCL
Sbjct: 338 LVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 397
Query: 385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444
EGLENILKVGE +K + GDVN ++++++E EG +KIE L+SHDNN I EKAVKILE
Sbjct: 398 EGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 445 YW 446
YW
Sbjct: 456 YW 457
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/425 (55%), Positives = 293/425 (68%), Gaps = 5/425 (1%)
Query: 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQ 82
I M+ ++S QL AT +FR LLS E +P I++VI GVV RFVEFL R++
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
LQ+E+AW LTNIASG S+ T +VI GAVPIF++LL+S +DV+EQAVWALGN+A DS
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQL 201
CR+ VL L PLL ++ +L+M R A W LS LC+GK PP F +V P L L+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
+ + D +VL+DACW LSYLS G NDKIQ VI+AGVCRRLVELL H V++PAL VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
IV GDD QTQ I+N A+ L L+ + K+SIKK ACWTISNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
L+++LQ AEF +KEAA AI NAT G+ EQIKYLV GCIKPLCDLL +D KIV
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
V L GLENIL++GE E T +N Y L+EE G KIE L+SH+N I +KA +
Sbjct: 380 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 437
Query: 442 LETYW 446
+E Y+
Sbjct: 438 IEHYF 442
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/425 (55%), Positives = 293/425 (68%), Gaps = 5/425 (1%)
Query: 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQA-GVVPRFVEFLMREDYPQ 82
I M+ ++S QL AT +FR LLS E +P I++VI GVV RFVEFL R++
Sbjct: 18 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
LQ+E+AW LTNIASG S+ T +VI GAVPIF++LL+S +DV+EQAVWALGN+A DS
Sbjct: 78 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP-FDQVRPALPALAQL 201
CR+ VL L PLL ++ +L+M R A W LS LC+GK PP F +V P L L+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261
+ + D +VL+DACW LSYLS G NDKIQ VI+AGVCRRLVELL H V++PAL VGN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
IV GDD QTQ I+N A+ L L+ + K+SIKK ACWTISNITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
L+++LQ AEF +KEAA AI NAT G+ EQIKYLV GCIKPLCDLL +D KIV
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
V L GLENIL++GE E T +N Y L+EE G KIE L+SH+N I +KA +
Sbjct: 377 VALNGLENILRLGEQEAKRNGT--GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDL 434
Query: 442 LETYW 446
+E Y+
Sbjct: 435 IEHYF 439
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/426 (55%), Positives = 298/426 (69%), Gaps = 9/426 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
LP M + SDD QL AT +FR +LS E P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
Q EAAWALTNIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVA DS
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
R+ VL+ A+ P+L N + K S++R ATWTLS LC+G KPQP + V ALP LA+LI
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
+ D E L DACW +SYLS G + IQ VI+ + +RLVELL H S V TPAL VGNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G+D QTQ +IN G +P L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
PLV +L+ AE+ KKEA AI+NA+ G + I+YLV +GCIKPLCDLL D +I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
V L+ LENILK+GEA+K ++N+ A +E+ G +KI + ++N+ I EKA K
Sbjct: 446 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503
Query: 441 ILETYW 446
I+ETY+
Sbjct: 504 IIETYF 509
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/426 (55%), Positives = 298/426 (69%), Gaps = 9/426 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
LP M + SDD QL AT +FR +LS E P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
Q EAAWALTNIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVA DS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
R+ VL+ A+ P+L N + K S++R ATWTLS LC+G KPQP + V ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
+ D E L DACW +SYLS G + IQ VI+ + +RLVELL H S V TPAL VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G+D QTQ +IN G +P L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
PLV +L+ AE+ KKEA AI+NA+ G + I+YLV +GCIKPLCDLL D +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
V L+ LENILK+GEA+K ++N+ A +E+ G +KI + ++N+ I EKA K
Sbjct: 358 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 441 ILETYW 446
I+ETY+
Sbjct: 416 IIETYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/426 (55%), Positives = 298/426 (69%), Gaps = 9/426 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
LP M + SDD QL AT +FR +LS E P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
Q EAAWALTNIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVA DS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
R+ VL+ A+ P+L N + K S++R ATWTLS LC+G KPQP + V ALP LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
+ D E L DACW +SYLS G + IQ VI+ + +RLVELL H S V TPAL VGNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G+D QTQ +IN G +P L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
PLV +L+ AE+ KKEA AI+NA+ G + I+YLV +GCIKPLCDLL D +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
V L+ LENI+K+GEA+K ++N+ A +E+ G +KI + ++N+ I EKA K
Sbjct: 358 EVTLDALENIIKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 415
Query: 441 ILETYW 446
I+ETY+
Sbjct: 416 IIETYF 421
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
LP M + SDD QL AT +FR +LS E P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
Q EAAWALTNIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVA DS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
R+ VL+ A+ P+L N + K S++R ATWTLS LC+G KPQP + V ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
+ D E L DACW +SYLS G + IQ VI+ + +RLVELL H S V TPAL VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G+D QTQ +IN G +P L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
PLV +L+ AE KKEA AI+NA+ G + I+YLV +GCIKPLCDLL D +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
V L+ LENILK+GEA+K ++N+ A +E+ G +KI + ++N+ I EKA K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 441 ILETYW 446
I+ETY+
Sbjct: 417 IIETYF 422
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
LP M + SDD QL AT +FR +LS E P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
Q EAAWALTNIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVA DS
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
R+ VL+ A+ P+L N + K S++R ATWTLS LC+G KPQP + V ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
+ D E L DACW +SYLS G + IQ VI+ + +RLVELL H S V TPAL VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G+D QTQ +IN G +P L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
PLV +L+ AE KKEA AI+NA+ G + I+YLV +GCIKPLCDLL D +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
V L+ LENILK+GEA+K ++N+ A +E+ G +KI + ++N+ I EKA K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 441 ILETYW 446
I+ETY+
Sbjct: 418 IIETYF 423
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
LP M + SDD QL AT +FR +LS E P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
Q EAAWALTNIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVA DS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
R+ VL+ A+ P+L N + K S++R ATWTLS LC+G KPQP + V ALP LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
+ D E L DACW +SYLS G + IQ VI+ + +RLVELL H S V TPAL VGNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G+D QTQ +IN G +P L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
PLV +L+ AE KKEA AI+NA+ G + I+YLV +GCIKPLCDLL D +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
V L+ LENILK+GEA+K ++N+ A +E+ G +KI + ++N+ I EKA K
Sbjct: 359 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 416
Query: 441 ILETYW 446
I+ETY+
Sbjct: 417 IIETYF 422
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 419 bits (1077), Expect = e-117, Method: Compositional matrix adjust.
Identities = 236/426 (55%), Positives = 297/426 (69%), Gaps = 9/426 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-L 83
LP M + SDD QL AT +FR +LS E P I+ VIQAGVVPR VEF MRE+ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143
Q EAAWALTNIASGTS T VV+D AVP+F++LL + S +V+EQA+WALGNVA DS
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLI 202
R+ VL+ A+ P+L N + K S++R ATWTLS LC+G KPQP + V ALP LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
+ D E L DACW +SYLS G + IQ VI+ + +RLVELL H S V TPAL VGNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G+D QTQ +IN G +P L LL+ + K++IKK ACWTISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTH--EQIKYLVREGCIKPLCDLLLCVDPKIV 380
PLV +L+ AE KKEA AI+NA+ G + I+YLV +GCIKPLCDLL D +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440
V L+ LENILK+GEA+K ++N+ A +E+ G +KI + ++N+ I EKA K
Sbjct: 360 EVTLDALENILKMGEADKEARGL--NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 441 ILETYW 446
I+ETY+
Sbjct: 418 IIETYF 423
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 443 ETYWC 447
E Y+
Sbjct: 474 EKYFS 478
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 443 ETYWC 447
E Y+
Sbjct: 474 EKYFS 478
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 407 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 443 ETYWC 447
E Y+
Sbjct: 460 EKYFS 464
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 421 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 443 ETYWC 447
E Y+
Sbjct: 474 EKYFS 478
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 397 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 443 ETYW 446
E Y+
Sbjct: 450 EKYF 453
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 377 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 443 ETYWC 447
E Y+
Sbjct: 430 EKYFS 434
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 443 ETYW 446
E Y+
Sbjct: 419 EKYF 422
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 443 ETYW 446
E Y+
Sbjct: 423 EKYF 426
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 443 ETYW 446
E Y+
Sbjct: 424 EKYF 427
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/425 (45%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 443 ETYWC 447
E Y+
Sbjct: 424 EKYFS 428
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 370 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 443 ETYW 446
E Y+
Sbjct: 423 EKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 371 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 443 ETYW 446
E Y+
Sbjct: 424 EKYF 427
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 366 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 443 ETYW 446
E Y+
Sbjct: 419 EKYF 422
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/424 (45%), Positives = 275/424 (64%), Gaps = 13/424 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +KEAA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 405 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 443 ETYW 446
E Y+
Sbjct: 458 EKYF 461
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S + QL+AT R LLS E+ P I+++I+AG++P+FV FL R D +Q+E+
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A D R+LV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 148 LREEALIPLLAQLNEHAKLSM----LRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L S+ LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H DD EVL+D CW +SYL+ G N++I +V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV+VL A+F +KEA A+ N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L++H+N + + ++ ++
Sbjct: 372 ILDAISNIFQAAEK-------LGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 443 ETYWC 447
E Y+
Sbjct: 425 EKYFS 429
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/425 (45%), Positives = 273/425 (64%), Gaps = 13/425 (3%)
Query: 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEA 87
+V G+ S++ QL+AT R LLS E+ P I+++I+AG++P+FV FL + D +Q+E+
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 88 AWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147
AWALTNIASGTS T V+D GA+P F+ LLASP + EQAVWALGN+A R+LV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 148 LREEALIPLLAQLN----EHAKLSMLRIATWTLSKLCKGK-PQPPFDQVRPALPALAQLI 202
++ A+ PLLA L LR TWTLS LC+ K P PP D V LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 203 HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262
H +D EVL+D+CW +SYL+ G N++I++V++ GV +LV+LLG ++TPAL +GNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322
V G D QTQ +I+ GA+ +LL N K +I+K A WT+SNITAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV 382
LV VL A+F +K AA AI N T GT EQI YLV G I+PL +LL D KI+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 383 CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442
L+ + NI + E +G+ + + ++EE G KIE L+ H+N + + ++ ++
Sbjct: 440 ILDAISNIFQAAE-------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 443 ETYWC 447
E Y+
Sbjct: 493 EKYFS 497
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 15/249 (6%)
Query: 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254
LP + Q ++ DD + A S + N++IQ VI+AG LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314
ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374
AVIDAG + LV +L I +EA A++N G +EQI+ ++ G + L LL
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 375 VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGI 434
+ +I+ L L NI G N+ + V+E +K+E L+SH+N I
Sbjct: 192 PNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKI 238
Query: 435 REKAVKILE 443
+++A + LE
Sbjct: 239 QKEAQEALE 247
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 130/234 (55%), Gaps = 8/234 (3%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
LP M + SDD QL AT +F +LS + + +I+ VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 85 YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
EA WAL+NIASG + VID GA+P V+LL+SP++ + ++A+WAL N+A+
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG---KPQPPFDQVRPALPALAQL 201
V+ AL P L QL +L+ A W LS + G + Q D ALPAL QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQL 188
Query: 202 IHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255
+ +E++L +A W LS ++ G N++ Q V EAG +L +L H + + A
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 134/280 (47%), Gaps = 50/280 (17%)
Query: 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVRE 127
+P+ + L +D Q Q A + I S + VID GA+P V+LL+SP++ +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI-- 70
Query: 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG---KP 184
L+ A W LS + G +
Sbjct: 71 -----------------------------------------LQEALWALSNIASGGNEQI 89
Query: 185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL 244
Q D ALPAL QL+ +E++L +A W LS ++ G N++IQ VI+AG LV+LL
Sbjct: 90 QAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 245 GHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304
P+ +L ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SN
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSN 206
Query: 305 ITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344
I +G EQ QAV +AG + L + I+KEA A+
Sbjct: 207 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 58 RIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
+I+ VI AG +P V+ L + LQ EA WAL+NIASG + V + GA+ +L
Sbjct: 172 QIQAVIDAGALPALVQLLSSPNEQILQ-EALWALSNIASGGNEQKQAVKEAGALEKLEQL 230
Query: 118 LASPSDDVREQAVWAL 133
+ ++ ++++A AL
Sbjct: 231 QSHENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
Query: 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254
LP + Q ++ D++ L A LS ++ G N++IQ VI+AG LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314
ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374
AVIDAG + LV +L I +EA A++N G +EQ + + G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 375 VDPKIVTVCLEGLENI 390
+ KI E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
ALPAL QL+ +E++L +A W LS ++ G N++IQ VI+AG LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344
QAV +AG + L + I+KEA A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 15/205 (7%)
Query: 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA 298
++V+ L P L AL + I G + Q Q +I+ GA+P L+ LL +++ I + A
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEA 74
Query: 299 CWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKY 358
W +SNI +G EQIQAVIDAG + LV +L I +EA A++N G +EQI+
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQA 133
Query: 359 LVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE 418
++ G + L LL + +I+ L L NI G N+ + V+E
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEAG 180
Query: 419 GFKKIEGLKSHDNNGIREKAVKILE 443
+K+E L+SH+N I+++A + LE
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALE 205
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 8/199 (4%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIER--SPRIEDVIQAGVVPRFVEFLMREDYPQ 82
LP MV + S D Q E + R L I + +I+ VI AG +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
LQ EA WAL+NIASG + VID GA+P V+LL+SP++ + ++A+WAL N+A+
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK-GKPQPPFDQVRPALPALAQL 201
V+ AL P L QL +L+ A W LS + G Q + AL L QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 202 IHLDDEEVLSDACWTLSYL 220
++E++ +A L L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
Query: 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254
LP + Q ++ D++ L A LS ++ G N++IQ VI+AG LV+LL P+ +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314
ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374
AVIDAG + LV +L I +EA A++N G +EQ K V+E +P + L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQ-KQAVKEAGAEPALEQLQS 190
Query: 375 V-DPKIVTVCLEGLENI 390
+ KI E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
ALPAL QL+ +E++L +A W LS ++ G N++IQ VI+AG LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344
QAV +AG L + I+KEA A+
Sbjct: 174 QAVKEAGAEPALEQLQSSPNEKIQKEAQEAL 204
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 102/199 (51%), Gaps = 8/199 (4%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIER--SPRIEDVIQAGVVPRFVEFLMREDYPQ 82
LP MV + S D Q E + R L I + +I+ VI AG +P V+ L +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142
LQ EA WAL+NIASG + VID GA+P V+LL+SP++ + ++A+WAL N+A+
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK-GKPQPPFDQVRPALPALAQL 201
V+ AL P L QL +L+ A W LS + G Q + A PAL QL
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 202 IHLDDEEVLSDACWTLSYL 220
+E++ +A L +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 194 ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253
ALPAL QL+ +E++L +A W LS ++ G N++IQ VI+AG LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI 313
ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344
QAV +AG + L + I+KEA A+
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 2/196 (1%)
Query: 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254
LP + Q ++ DD + A S + N++IQ VI+AG LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314
ALW + NI G + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374
AVIDAG + LV +L I +EA A++N G +EQ + + G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 375 VDPKIVTVCLEGLENI 390
+ KI E LE +
Sbjct: 192 ENEKIQKEAQEALEKL 207
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 106/197 (53%), Gaps = 4/197 (2%)
Query: 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQ 84
LP M + SDD QL AT +F +LS + + +I+ VI AG +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 85 YEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR 144
EA WAL+NIASG + VID GA+P V+LL+SP++ + ++A+WAL N+A+
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 145 NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK-GKPQPPFDQVRPALPALAQLIH 203
V+ AL P L QL +L+ A W LS + G Q + AL L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 204 LDDEEVLSDACWTLSYL 220
++E++ +A L L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321
I+ + Q Q +I+ GA+P L+ LL +++ I + A W +SNI +G EQIQAVIDAG
Sbjct: 39 ILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGA 97
Query: 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVT 381
+ LV +L I +EA A++N G +EQI+ ++ G + L LL + +I+
Sbjct: 98 LPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 382 VCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKI 441
L L NI G N+ + V+E +K+E L+SH+N I+++A +
Sbjct: 157 EALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203
Query: 442 LE 443
LE
Sbjct: 204 LE 205
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 9/246 (3%)
Query: 151 EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA--LPALAQLIHLDDEE 208
E L+ LL + + R L+++ G P + A + L +L+ D E
Sbjct: 5 EKLVKLLTSTDSETQKEAAR----DLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSE 59
Query: 209 VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF 268
V +A L+ ++ G ++ I+ +++AG LV+LL V A + NI G D
Sbjct: 60 VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 119
Query: 269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNV 328
+ I++ G V L+ LL + ++K A ++NI +G E I+A++DAG + LV +
Sbjct: 120 AIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 178
Query: 329 LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE 388
L + +++KEAA A+AN G IK +V G ++ L LL D ++ LE
Sbjct: 179 LTSTDSEVQKEAARALAN-IASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237
Query: 389 NILKVG 394
NI G
Sbjct: 238 NIKSGG 243
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 114/280 (40%), Gaps = 53/280 (18%)
Query: 34 SDDNSLQLEATTQFRILLSIERSPR--IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWAL 91
S D+ Q EA R L I P I+ ++ AG V V+ L D ++Q EAA AL
Sbjct: 13 STDSETQKEAA---RDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARAL 68
Query: 92 TNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREE 151
NIASG ++D G V + VKLL S +V+++A AL N+A+
Sbjct: 69 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG------------ 116
Query: 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA--LPALAQLIHLDDEEV 209
P + A + L +L+ D EV
Sbjct: 117 --------------------------------PDEAIKAIVDAGGVEVLVKLLTSTDSEV 144
Query: 210 LSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 269
+A L+ ++ G ++ I+ +++AG LV+LL V A + NI G
Sbjct: 145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204
Query: 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN 309
+ I++ G V L LL + ++K A + NI +G
Sbjct: 205 IKAIVDAGGVEVLQKLLTSTDSE-VQKEAQRALENIKSGG 243
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 140
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 201 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 256
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 257 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 313
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 314 PAICALRHLTSR 325
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 289 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 348
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 349 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 390
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 95 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 153
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 214 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 269
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 270 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 326
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 327 PAICALRHLTSR 338
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 302 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 361
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 362 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 403
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 95 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 153
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 154 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 213
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 214 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 269
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 270 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 326
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 327 PAICALRHLTSR 338
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 302 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 361
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 362 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 403
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 98 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 156
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 157 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 216
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 217 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 272
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 273 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 329
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 330 PAICALRHLTSR 341
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 305 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 364
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 365 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 406
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 155
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 156 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 216 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 271
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 272 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 329 PAICALRHLTSR 340
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 304 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 364 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 82 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 140
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 141 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 200
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 201 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 256
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 257 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 313
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 314 PAICALRHLTSR 325
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 289 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 348
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 349 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 390
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 157
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 218 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 273
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 274 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 330
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 331 PAICALRHLTSR 342
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 306 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 365
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 366 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 407
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 86 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 144
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 145 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 204
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 205 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 260
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 261 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 317
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 318 PAICALRHLTSR 329
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 293 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 352
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 353 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 394
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 101 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 159
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 160 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 219
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 220 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 275
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 276 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 332
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 333 PAICALRHLTSR 344
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 308 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 367
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 368 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 409
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 100 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 158
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 159 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 218
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 219 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 274
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 275 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 331
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 332 PAICALRHLTSR 343
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 307 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 366
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 367 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 408
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 84 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 142
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 143 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 202
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 203 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 258
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 259 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 315
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 316 PAICALRHLTSR 327
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 291 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 350
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 351 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 392
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 99 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 157
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 158 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 217
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 218 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 273
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 274 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 330
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 331 PAICALRHLTSR 342
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 306 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 365
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 366 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 407
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 152
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 153 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 213 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 268
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 269 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 325
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 326 PAICALRHLTSR 337
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 301 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 361 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 402
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 101/254 (39%), Gaps = 18/254 (7%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P VK L SP D V A+ L N+ G + V L +A LN+
Sbjct: 39 IFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVALLNK-T 97
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWT----LSYL 220
+ L I T L L G + + P L+++ WT L L
Sbjct: 98 NVKFLAITTDCLQILAYGNQESKLIILASGGPQ--ALVNIXRTYTYEKLLWTTSRVLKVL 155
Query: 221 SYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVP 280
S +++K ++EAG + L L PS ++ LWT+ N+ D T+ G +
Sbjct: 156 SVCSSNK-PAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGXEGLLG 211
Query: 281 CLLALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDI 336
L+ LL I V C +SN+T N + V G I LV + A DI
Sbjct: 212 TLVQLL---GSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGDREDI 268
Query: 337 KKEAALAIANATVR 350
+ A A+ + T R
Sbjct: 269 TEPAICALRHLTSR 282
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264
+D E TL LS+ + + + ++G LV+ LG P SVL A+ T+ N+++
Sbjct: 14 NDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLL 72
Query: 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLI 322
+ + G + +ALL +K ++K +A T + + GN+E ++ +G
Sbjct: 73 HQEGAKXAVRLAGGLQKXVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 129
Query: 323 VPLVNVLQDAEFD 335
LVN+ + ++
Sbjct: 130 QALVNIXRTYTYE 142
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 64 QAGVVPRFVEFLMREDY----------PQLQYEAAWALTNIASGTS----------MNTN 103
+ G +PR V+ L+R Q Q+ I G + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ N V H +P+ VKL
Sbjct: 246 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEXAQNAVRLHYGLPVVVKL 305
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 306 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 347
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 104/252 (41%), Gaps = 14/252 (5%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P V +L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-T 288
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLIH-LDDEEVLSDACWTLSYLSY 222
+ L I T L L G + + P AL ++ E++L L LS
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
+++K ++EAG + L L PS ++ LWT+ N+ D T+ G + L
Sbjct: 349 CSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL---SDAATKQEGMEGLLGTL 404
Query: 283 LALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKK 338
+ LL I V C +SN+T N + V G I LV + A DI +
Sbjct: 405 VQLL---GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 461
Query: 339 EAALAIANATVR 350
A A+ + T R
Sbjct: 462 PAICALRHLTSR 473
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264
+D E TL LS+ + + + ++G LV +LG P SVL A+ T+ N+++
Sbjct: 205 NDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263
Query: 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT--ISNITAGNREQIQAVIDAGLI 322
+ + G + ++ALL +K ++K +A T + + GN+E ++ +G
Sbjct: 264 HQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 320
Query: 323 VPLVNVLQDAEFD 335
LVN+++ ++
Sbjct: 321 QALVNIMRTYTYE 333
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 21/111 (18%)
Query: 62 VIQAGVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117
V Q G + V ++R ED + A LT+ M N V H +P+ VKL
Sbjct: 437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKL 496
Query: 118 LASPSDDVREQAVWALGNVAADSPGCRNLV--------LREEALIPLLAQL 160
L PS W L + A RNL LRE+ IP L QL
Sbjct: 497 LHPPSH-------WPL--IKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 82 QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
Q Q A TN+ T+ +V+ D +P+ + LL P+ DVR A +A+ D+
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191
Query: 142 GCRNLVLREEALIPLLAQLNEHAKLSML-----RIATWTLSKLCKG-KPQPPFDQV---- 191
R + + L NE ++ + R LS LC K +D +
Sbjct: 192 DIR------DCFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAA 245
Query: 192 -----RPALPAL-AQLIHLDDEEVLSDA 213
+ LP L L DD E+++ A
Sbjct: 246 GELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 16/253 (6%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA 164
+ G +P V++L+SP + V A+ L N+ G + V + L ++ LN++
Sbjct: 99 IFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNN 158
Query: 165 KLSMLRIATWTLSKLCKGKPQPPFDQVRPALP-ALAQLI-HLDDEEVLSDACWTLSYLSY 222
L I T L L G + + P AL Q++ + E++L L LS
Sbjct: 159 P-KFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSV 217
Query: 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282
++K ++EAG + L + L SP ++ LWT+ N+ D T+ + +
Sbjct: 218 CPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL---SDVATK----QEGLESV 269
Query: 283 LALLIHN---HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIK 337
L +L++ ++ A T+SN+T N + V + L++ + A + DI
Sbjct: 270 LKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDIT 329
Query: 338 KEAALAIANATVR 350
+ A A+ + T R
Sbjct: 330 EPAVCALRHLTSR 342
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 46/271 (16%)
Query: 83 LQYEAAWALTNIASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
L+ A ALTN+ G N + G + V L S S+D+++ L N++ +
Sbjct: 102 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 161
Query: 142 GCRNLVLRE----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
LRE +AL+ ++ + + L + A W LS C + + V AL
Sbjct: 162 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 220
Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
L + L+Y + +IE+G L
Sbjct: 221 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 245
Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKVACWTISNITAGNREQIQA 315
V +++ ++ Q + + CL LL H +H +I AC T+ N++A N + +A
Sbjct: 246 NVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 302
Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
+ D G + L N++ I +A A+ N
Sbjct: 303 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 333
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 46/271 (16%)
Query: 83 LQYEAAWALTNIASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
L+ A ALTN+ G N + G + V L S S+D+++ L N++ +
Sbjct: 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 275
Query: 142 GCRNLVLRE----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
LRE +AL+ ++ + + L + A W LS C + + V AL
Sbjct: 276 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 334
Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
L + L+Y + +IE+G L
Sbjct: 335 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 359
Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKVACWTISNITAGNREQIQA 315
V +++ ++ Q + + CL LL H +H +I AC T+ N++A N + +A
Sbjct: 360 NVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416
Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
+ D G + L N++ I +A A+ N
Sbjct: 417 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 46/271 (16%)
Query: 83 LQYEAAWALTNIASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
L+ A ALTN+ G N + G V L S S+D+++ L N++ +
Sbjct: 109 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWRAD 168
Query: 142 GCRNLVLRE----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
LRE +AL ++ + + L + A W LS C + + V AL
Sbjct: 169 VNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 227
Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
L + L+Y + +IE+G L
Sbjct: 228 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 252
Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKVACWTISNITAGNREQIQA 315
V +++ ++ Q + + CL LL H +H +I AC T+ N++A N + +A
Sbjct: 253 NVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 309
Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
+ D G + L N++ I +A A+ N
Sbjct: 310 LWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 340
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 46/271 (16%)
Query: 83 LQYEAAWALTNIASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
L+ A ALTN+ G N + G + V L S S+D+++ L N++ +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 142 GCRNLVLRE----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
LRE +AL+ ++ + + L + A W LS C + + V AL
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 218
Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
L + L+Y + +IE+G L
Sbjct: 219 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 243
Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKVACWTISNITAGNREQIQA 315
V +++ ++ Q + + CL LL H +H +I AC T+ N++A N + +A
Sbjct: 244 NVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300
Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
+ D G + L N++ I +A A+ N
Sbjct: 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 46/271 (16%)
Query: 83 LQYEAAWALTNIASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
L+ A ALTN+ G N + G + V L S S+D+++ L N++ +
Sbjct: 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 142 GCRNLVLRE----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
LRE +AL+ ++ + + L + A W LS C + + V AL
Sbjct: 160 VNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 218
Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
L + L+Y + +IE+G L
Sbjct: 219 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 243
Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKVACWTISNITAGNREQIQA 315
V +++ ++ Q + + CL LL H +H +I AC T+ N++A N + +A
Sbjct: 244 NVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300
Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
+ D G + L N++ I +A A+ N
Sbjct: 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 104/271 (38%), Gaps = 46/271 (16%)
Query: 83 LQYEAAWALTNIASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141
L+ A ALTN+ G N + G V L S S+D+++ L N++ +
Sbjct: 100 LRRYAGXALTNLTFGDVANKATLCSXKGCXRALVAQLKSESEDLQQVIASVLRNLSWRAD 159
Query: 142 GCRNLVLRE----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197
LRE +AL ++ + + L + A W LS C + + V AL
Sbjct: 160 VNSKKTLREVGSVKALXECALEVKKESTLKSVLSALWNLSAHCT-ENKADICAVDGALAF 218
Query: 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257
L + L+Y + +IE+G L
Sbjct: 219 L------------------VGTLTYRSQTNTLAIIESG-----------------GGILR 243
Query: 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKVACWTISNITAGNREQIQA 315
V +++ ++ Q + + CL LL H +H +I AC T+ N++A N + +A
Sbjct: 244 NVSSLIATNEDHRQILRENN---CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300
Query: 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIAN 346
+ D G + L N++ I +A A+ N
Sbjct: 301 LWDXGAVSXLKNLIHSKHKXIAXGSAAALRN 331
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 131 WALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ 190
+AL +A +P ++R+ + +L+ N KL+ L + + F
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTALN--------FIEAMGENSFKY 178
Query: 191 VRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243
V P LP + L+H DE V + A L +L+ NDK++ V V +RL EL
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|4B4T|N Chain N, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 945
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 33/179 (18%)
Query: 75 LMREDYPQLQYEAAWALTNIASGTSMNTNVV-IDHGAVPIFVKLLASPSDDVREQAVWAL 133
++ D L+Y A+ + +GT N+ V + H AV + +DDVR AV AL
Sbjct: 539 MLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIAL 591
Query: 134 GNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT-WTLSKLCKGK--------- 183
G V +LR+ +P + QL + + +R T + L C GK
Sbjct: 592 GFV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 641
Query: 184 ---PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTL--SYLSYGTNDKIQVVIEAGVC 237
+ P D VR A +I + E L+ + ++LS TN + + + G C
Sbjct: 642 DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGAC 700
>pdb|4ADY|A Chain A, Crystal Structure Of 26s Proteasome Subunit Rpn2
pdb|4ADY|B Chain B, Crystal Structure Of 26s Proteasome Subunit Rpn2
Length = 963
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 33/178 (18%)
Query: 76 MREDYPQLQYEAAWALTNIASGTSMNTNVV-IDHGAVPIFVKLLASPSDDVREQAVWALG 134
+ D L+Y A+ + +GT N+ V + H AV + +DDVR AV ALG
Sbjct: 551 LASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV-------SDSNDDVRRAAVIALG 603
Query: 135 NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT-WTLSKLCKGK---------- 183
V +LR+ +P + QL + + +R T + L C GK
Sbjct: 604 FV----------LLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653
Query: 184 --PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTL--SYLSYGTNDKIQVVIEAGVC 237
+ P D VR A I + E L+ + ++LS TN + + + G C
Sbjct: 654 PLTKDPVDFVRQAAXIALSXILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGAC 711
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHAKLSML 169
+P+ +LL V+E + LG +A GC + ++ LIP L Q K +
Sbjct: 361 LPLLKELLFHHEWVVKESGILVLGAIAE---GCMQGMIPYLPELIPHLIQCLSDKKALVR 417
Query: 170 RIATWTLSKLCKG-KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220
I WTLS+ QPP ++P + L + I ++ V AC + L
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATL 469
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH------NHKKS 293
L ELL H V + +G I G C+ G +P L L+ H + K
Sbjct: 364 LKELLFHHEWVVKESGILVLGAIAEG------CM--QGMIPYLPELIPHLIQCLSDKKAL 415
Query: 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH 353
++ + CWT+S Q L+ L+ + D+ +++ A A A
Sbjct: 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475
Query: 354 EQIKYL 359
E + YL
Sbjct: 476 ELVPYL 481
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHAKLSML 169
+P+ +LL V+E + LG +A GC + ++ LIP L Q K +
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAE---GCMQGMIPYLPELIPHLIQCLSDKKALVR 455
Query: 170 RIATWTLSKLCKG-KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220
I WTLS+ QPP ++P + L + I ++ V AC + L
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATL 507
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH------NHKKS 293
L ELL H V + +G I G C+ G +P L L+ H + K
Sbjct: 402 LKELLFHHEWVVKESGILVLGAIAEG------CM--QGMIPYLPELIPHLIQCLSDKKAL 453
Query: 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH 353
++ + CWT+S Q L+ L+ + D+ +++ A A A
Sbjct: 454 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 513
Query: 354 EQIKYL 359
E + YL
Sbjct: 514 ELVPYL 519
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHAKLSML 169
+P+ +LL V+E + LG +A GC + ++ LIP L Q K +
Sbjct: 374 LPLLKELLFHHEWVVKESGILVLGAIAE---GCMQGMIPYLPELIPHLIQCLSDKKALVR 430
Query: 170 RIATWTLSKLCKG-KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI 228
I WTLS+ QPP ++P + L + I ++ V AC + L
Sbjct: 431 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATL-------- 482
Query: 229 QVVIEAGVCRRLVELLGH 246
E C LV L +
Sbjct: 483 ----EEEACTELVPYLAY 496
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 14/126 (11%)
Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH------NHKKS 293
L ELL H V + +G I G C+ G +P L L+ H + K
Sbjct: 377 LKELLFHHEWVVKESGILVLGAIAEG------CM--QGMIPYLPELIPHLIQCLSDKKAL 428
Query: 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH 353
++ + CWT+S Q L+ L+ + D+ +++ A A A
Sbjct: 429 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 488
Query: 354 EQIKYL 359
E + YL
Sbjct: 489 ELVPYL 494
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE 162
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 93 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264
+D E TL LS+ + + + ++G LV++LG P SVL A+ T+ N+++
Sbjct: 68 NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 126
Query: 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
+ + G + ++ALL +K ++K +A T
Sbjct: 127 HQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITT 160
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE 162
+ G +P VK+L SP D V A+ L N+ G + V L ++A LN+
Sbjct: 93 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 150
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264
+D E TL LS+ + + + ++G LV++LG P SVL A+ T+ N+++
Sbjct: 68 NDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 126
Query: 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301
+ + G + ++ALL +K ++K +A T
Sbjct: 127 HQEGAKMAVRLAGGLQKMVALL---NKTNVKFLAITT 160
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 111 VPIFVKLLASPSDDVREQAVWALGNV--AADSPGCRNLVLREEALIPLLAQLNEHAKLSM 168
+P + + +P R+ AV A G + + + LV++ +P L +L + + +
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 424
Query: 169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEE--VLSDACWTLSYLS 221
A WT+ ++C+ P+ + V A P L LI E V S+ CW S L+
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLA 478
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKV 297
L+EL+ PS V A WTVG I + + IN + LL LI + + +
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASN 469
Query: 298 ACWTISNITAGNRE 311
CW S++ E
Sbjct: 470 VCWAFSSLAEAAYE 483
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHAKLSML 169
+P+ +LL V+E + LG +A GC + + LIP L Q K +
Sbjct: 399 LPLLKELLFHHEWVVKESGILVLGAIAE---GCXQGXIPYLPELIPHLIQCLSDKKALVR 455
Query: 170 RIATWTLSKLCKG-KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI 228
I WTLS+ QPP ++P L + I ++ V AC + L
Sbjct: 456 SITCWTLSRYAHWVVSQPPDTYLKPLXTELLKRILDSNKRVQEAACSAFATL-------- 507
Query: 229 QVVIEAGVCRRLVELLGH 246
E C LV L +
Sbjct: 508 ----EEEACTELVPYLAY 521
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
Query: 60 EDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA 119
ED I V+P E + D+ + + A A +I G N + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDW-RYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMK 418
Query: 120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--HAKLSMLRIATWTLS 177
PS VR+ W +G + P + + L PLL L E A+ + W S
Sbjct: 419 DPSVVVRDTTAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475
Query: 178 KLCKGKPQP---PFDQVRPALPALAQLIHL 204
L + + DQ PA L+ L
Sbjct: 476 SLAEAAYEAADVADDQEEPATYCLSSSFEL 505
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKV 297
L+EL+ PS V A WTVG I + + IN + LL LI + + +
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASN 469
Query: 298 ACWTISNITAGNRE 311
CW S++ E
Sbjct: 470 VCWAFSSLAEAAYE 483
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--HAKLS 167
A+P ++L+ PS VR+ A W +G + P + + L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 168 MLRIATWTLSKLCKGKPQP---PFDQVRPALPALAQLIHL 204
+ W S L + + DQ PA L+ L
Sbjct: 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKV 297
L+EL+ PS V A WTVG I + + IN + LL LI + + +
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASN 469
Query: 298 ACWTISNITAGNRE 311
CW S++ E
Sbjct: 470 VCWAFSSLAEAAYE 483
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--HAKLS 167
A+P ++L+ PS VR+ A W +G + P + + L PLL L E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 465
Query: 168 MLRIATWTLSKLCKGKPQP---PFDQVRPALPALAQLIHL 204
+ W S L + + DQ PA L+ L
Sbjct: 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 505
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH--NHKKSIKKV 297
L+EL+ PS V A WTVG I + + IN + LL LI + + +
Sbjct: 288 LIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEPRVASN 344
Query: 298 ACWTISNITAGNRE 311
CW S++ E
Sbjct: 345 VCWAFSSLAEAAYE 358
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--HAKLS 167
A+P ++L+ PS VR+ A W +G + P + + L PLL L E A+
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEGLSAEPR 340
Query: 168 MLRIATWTLSKLCKGKPQP---PFDQVRPALPALAQLIHL 204
+ W S L + + DQ PA L+ L
Sbjct: 341 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFEL 380
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 57 PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
PR+ ++A + ++ L +D P ++ AA L A ++ + +P+F
Sbjct: 147 PRVSSAVKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 202
Query: 117 LLASPSDDVREQAVWALGNVA 137
L + D VR AV A N+A
Sbjct: 203 LASDEQDSVRLLAVEACVNIA 223
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 57 PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
PR+ ++A + ++ L +D P ++ AA L A ++ + +P+F
Sbjct: 149 PRVSSAVKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 204
Query: 117 LLASPSDDVREQAVWALGNVA 137
L + D VR AV A N+A
Sbjct: 205 LASDEQDSVRLLAVEACVNIA 225
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 57 PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
PR+ ++A + ++ L +D P ++ AA L A ++ + +P+F
Sbjct: 156 PRVSSAVKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 211
Query: 117 LLASPSDDVREQAVWALGNVA 137
L + D VR AV A N+A
Sbjct: 212 LASDEQDSVRLLAVEACVNIA 232
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 57 PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
PR+ ++A + ++ L +D P ++ AA L A ++ + +P+F
Sbjct: 155 PRVSSAVKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210
Query: 117 LLASPSDDVREQAVWALGNVA 137
L + D VR AV A N+A
Sbjct: 211 LASDEQDSVRLLAVEACVNIA 231
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 57 PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
PR+ ++A + ++ L +D P ++ AA L A ++ + +P+F
Sbjct: 156 PRVSSAVKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 211
Query: 117 LLASPSDDVREQAVWALGNVA 137
L + D VR AV A N+A
Sbjct: 212 LASDEQDSVRLLAVEACVNIA 232
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 57 PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116
PR+ ++A + ++ L +D P ++ AA L A ++ + +P+F
Sbjct: 155 PRVSSAVKAEL-RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210
Query: 117 LLASPSDDVREQAVWALGNVA 137
L + D VR AV A N+A
Sbjct: 211 LASDEQDSVRLLAVEACVNIA 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,319,112
Number of Sequences: 62578
Number of extensions: 541573
Number of successful extensions: 2193
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 191
length of query: 458
length of database: 14,973,337
effective HSP length: 102
effective length of query: 356
effective length of database: 8,590,381
effective search space: 3058175636
effective search space used: 3058175636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)