Query 043950
Match_columns 458
No_of_seqs 302 out of 2214
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 09:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 1.8E-62 3.9E-67 440.3 45.9 425 25-454 68-493 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 1.8E-60 3.9E-65 396.1 32.4 426 23-451 71-500 (526)
3 KOG0166 Karyopherin (importin) 100.0 8.5E-49 1.8E-53 352.3 31.9 390 4-397 90-491 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 3.2E-48 6.9E-53 323.1 23.8 388 3-394 94-498 (526)
5 PLN03200 cellulose synthase-in 100.0 5.2E-40 1.1E-44 338.2 44.3 411 19-451 185-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.6E-38 3.4E-43 327.4 44.7 418 21-449 402-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 3.2E-32 6.9E-37 229.7 22.6 405 23-450 85-496 (550)
8 KOG4224 Armadillo repeat prote 100.0 2.9E-30 6.3E-35 217.9 26.5 366 20-396 123-497 (550)
9 PF05804 KAP: Kinesin-associat 100.0 5.3E-26 1.1E-30 217.3 33.4 388 17-426 284-677 (708)
10 PF05804 KAP: Kinesin-associat 100.0 5.1E-25 1.1E-29 210.6 38.1 391 26-446 253-648 (708)
11 KOG1048 Neural adherens juncti 99.9 1.6E-20 3.5E-25 175.7 22.3 399 24-450 234-687 (717)
12 KOG0168 Putative ubiquitin fus 99.9 3.2E-19 7E-24 166.5 30.2 390 24-430 168-655 (1051)
13 PF10508 Proteasom_PSMB: Prote 99.8 3E-16 6.6E-21 149.3 36.1 369 69-447 41-420 (503)
14 PF10508 Proteasom_PSMB: Prote 99.8 6.3E-16 1.4E-20 147.2 37.2 396 27-446 42-461 (503)
15 KOG4500 Rho/Rac GTPase guanine 99.8 2.8E-17 6.1E-22 142.8 23.3 379 34-431 53-458 (604)
16 KOG1222 Kinesin associated pro 99.8 6.8E-16 1.5E-20 136.2 29.5 393 18-432 299-697 (791)
17 KOG1048 Neural adherens juncti 99.8 1E-16 2.2E-21 150.5 22.5 369 18-395 270-687 (717)
18 KOG4199 Uncharacterized conser 99.8 1.1E-15 2.5E-20 128.8 24.3 309 34-349 118-444 (461)
19 KOG2122 Beta-catenin-binding p 99.7 4.7E-16 1E-20 152.8 23.1 333 15-350 227-602 (2195)
20 KOG4500 Rho/Rac GTPase guanine 99.7 5.6E-15 1.2E-19 128.7 26.4 404 22-440 86-512 (604)
21 KOG2171 Karyopherin (importin) 99.7 1.7E-14 3.6E-19 140.7 31.7 392 24-439 80-538 (1075)
22 KOG1222 Kinesin associated pro 99.7 2.1E-14 4.6E-19 126.9 28.6 381 35-444 275-660 (791)
23 PRK09687 putative lyase; Provi 99.7 8.1E-15 1.8E-19 128.1 22.8 256 66-389 23-279 (280)
24 KOG4199 Uncharacterized conser 99.7 9.1E-14 2E-18 117.5 26.3 318 64-390 102-442 (461)
25 KOG1293 Proteins containing ar 99.7 1.4E-13 3E-18 126.5 29.7 406 27-448 13-534 (678)
26 PRK09687 putative lyase; Provi 99.7 2.2E-14 4.8E-19 125.4 23.6 254 24-346 24-279 (280)
27 KOG1293 Proteins containing ar 99.7 8.8E-14 1.9E-18 127.7 26.1 375 18-396 46-537 (678)
28 KOG2171 Karyopherin (importin) 99.7 5.3E-13 1.1E-17 130.4 33.0 396 24-444 37-501 (1075)
29 KOG2023 Nuclear transport rece 99.6 3.2E-14 7E-19 130.3 19.4 355 22-394 127-548 (885)
30 PF04826 Arm_2: Armadillo-like 99.6 1.6E-13 3.5E-18 117.0 22.5 239 191-438 10-253 (254)
31 KOG2122 Beta-catenin-binding p 99.6 2.4E-14 5.2E-19 141.1 18.9 270 37-309 311-603 (2195)
32 PRK13800 putative oxidoreducta 99.6 5E-13 1.1E-17 136.7 29.6 275 23-388 621-895 (897)
33 PF04826 Arm_2: Armadillo-like 99.6 1.5E-13 3.2E-18 117.2 19.8 195 63-264 9-205 (254)
34 PRK13800 putative oxidoreducta 99.6 2.1E-12 4.6E-17 132.1 28.3 276 66-444 621-896 (897)
35 PF01602 Adaptin_N: Adaptin N 99.6 2.6E-12 5.6E-17 125.8 26.6 330 23-395 42-372 (526)
36 PF01602 Adaptin_N: Adaptin N 99.6 1.1E-12 2.3E-17 128.5 23.6 359 24-449 80-446 (526)
37 KOG2023 Nuclear transport rece 99.5 5.6E-13 1.2E-17 122.3 18.5 314 66-393 128-506 (885)
38 cd00256 VATPase_H VATPase_H, r 99.5 7E-11 1.5E-15 107.6 29.5 321 109-446 53-424 (429)
39 PTZ00429 beta-adaptin; Provisi 99.5 3.3E-10 7.2E-15 111.2 36.3 259 25-310 70-329 (746)
40 cd00020 ARM Armadillo/beta-cat 99.5 6.3E-13 1.4E-17 102.3 14.1 119 61-181 2-120 (120)
41 cd00020 ARM Armadillo/beta-cat 99.5 5.8E-13 1.2E-17 102.6 13.7 118 231-349 3-120 (120)
42 KOG0168 Putative ubiquitin fus 99.5 3.1E-11 6.7E-16 114.1 25.2 342 24-373 212-653 (1051)
43 cd00256 VATPase_H VATPase_H, r 99.4 1.1E-10 2.3E-15 106.4 23.7 282 23-308 101-426 (429)
44 PTZ00429 beta-adaptin; Provisi 99.4 4.3E-09 9.4E-14 103.5 35.2 294 23-349 32-326 (746)
45 KOG1241 Karyopherin (importin) 99.4 3.2E-10 6.9E-15 106.3 25.5 367 24-396 173-588 (859)
46 KOG0213 Splicing factor 3b, su 99.4 4.4E-10 9.5E-15 105.0 24.1 393 19-449 709-1144(1172)
47 KOG1241 Karyopherin (importin) 99.3 4.2E-10 9E-15 105.5 22.8 358 25-395 366-766 (859)
48 KOG0946 ER-Golgi vesicle-tethe 99.3 9.6E-09 2.1E-13 97.0 31.5 329 18-352 17-402 (970)
49 KOG2759 Vacuolar H+-ATPase V1 99.2 6.2E-08 1.3E-12 85.5 29.2 320 111-446 67-437 (442)
50 KOG2759 Vacuolar H+-ATPase V1 99.2 1.7E-09 3.6E-14 95.1 19.5 280 25-308 116-439 (442)
51 KOG0946 ER-Golgi vesicle-tethe 99.2 6.7E-08 1.4E-12 91.5 31.2 326 66-397 22-404 (970)
52 KOG2160 Armadillo/beta-catenin 99.2 5.4E-09 1.2E-13 90.8 21.6 191 204-396 94-286 (342)
53 COG5181 HSH155 U2 snRNP splice 99.2 3.1E-09 6.7E-14 97.5 19.8 313 109-449 604-949 (975)
54 KOG2160 Armadillo/beta-catenin 99.2 3E-09 6.6E-14 92.3 17.9 187 163-349 94-282 (342)
55 KOG1059 Vesicle coat complex A 99.2 6.3E-07 1.4E-11 84.2 32.9 217 25-264 146-365 (877)
56 PF03224 V-ATPase_H_N: V-ATPas 99.1 3E-09 6.6E-14 95.8 17.5 226 111-339 57-304 (312)
57 KOG1061 Vesicle coat complex A 99.1 3E-08 6.6E-13 94.0 23.6 342 23-397 49-420 (734)
58 KOG1062 Vesicle coat complex A 99.1 1.4E-07 3.1E-12 89.6 27.7 292 27-354 111-419 (866)
59 KOG1062 Vesicle coat complex A 99.1 5.3E-08 1.2E-12 92.4 24.6 377 23-445 142-542 (866)
60 KOG0212 Uncharacterized conser 99.0 2.4E-08 5.3E-13 90.9 17.0 320 63-396 81-410 (675)
61 PF03224 V-ATPase_H_N: V-ATPas 99.0 3.2E-08 6.9E-13 89.2 17.2 227 153-382 57-304 (312)
62 KOG1242 Protein containing ada 99.0 2E-06 4.3E-11 80.2 27.4 315 66-397 96-449 (569)
63 KOG1517 Guanine nucleotide bin 98.9 9.5E-08 2.1E-12 93.1 19.2 271 37-318 450-743 (1387)
64 KOG4413 26S proteasome regulat 98.9 6.7E-06 1.5E-10 70.4 27.1 363 25-392 84-484 (524)
65 COG5215 KAP95 Karyopherin (imp 98.9 1.9E-06 4.1E-11 79.1 24.7 348 35-396 53-441 (858)
66 COG5215 KAP95 Karyopherin (imp 98.9 8.1E-07 1.8E-11 81.4 22.3 350 36-397 147-534 (858)
67 KOG1061 Vesicle coat complex A 98.9 3E-07 6.5E-12 87.4 19.9 347 19-397 82-458 (734)
68 KOG3678 SARM protein (with ste 98.9 1.4E-07 3.1E-12 84.2 16.4 272 18-306 175-451 (832)
69 KOG1060 Vesicle coat complex A 98.9 3.6E-06 7.7E-11 80.2 26.3 215 68-309 110-352 (968)
70 KOG0212 Uncharacterized conser 98.9 9.8E-07 2.1E-11 80.7 21.5 350 23-393 84-445 (675)
71 KOG1517 Guanine nucleotide bin 98.8 2.9E-07 6.4E-12 89.8 18.7 248 23-274 472-742 (1387)
72 KOG1059 Vesicle coat complex A 98.8 5E-06 1.1E-10 78.4 25.9 276 66-373 144-423 (877)
73 KOG1789 Endocytosis protein RM 98.8 1.7E-05 3.8E-10 78.0 30.1 329 39-374 1741-2141(2235)
74 KOG1824 TATA-binding protein-i 98.8 4.8E-06 1E-10 80.9 26.1 356 27-397 9-407 (1233)
75 KOG0213 Splicing factor 3b, su 98.8 1.2E-05 2.5E-10 76.3 27.2 386 25-445 638-1063(1172)
76 KOG0211 Protein phosphatase 2A 98.8 3.7E-06 8E-11 82.5 24.8 387 21-444 235-661 (759)
77 KOG1060 Vesicle coat complex A 98.8 1.3E-05 2.8E-10 76.5 27.2 288 73-392 150-496 (968)
78 KOG1242 Protein containing ada 98.8 7.1E-06 1.5E-10 76.5 24.9 329 24-374 97-464 (569)
79 KOG3678 SARM protein (with ste 98.8 4.8E-07 1E-11 80.9 16.7 271 60-347 174-450 (832)
80 PF05536 Neurochondrin: Neuroc 98.7 4.5E-05 9.8E-10 73.6 29.3 382 23-426 5-459 (543)
81 KOG1789 Endocytosis protein RM 98.7 3.5E-05 7.6E-10 75.9 28.1 307 18-332 1766-2142(2235)
82 KOG2973 Uncharacterized conser 98.7 9.9E-06 2.1E-10 68.9 20.4 274 25-308 5-316 (353)
83 KOG1824 TATA-binding protein-i 98.7 2.2E-05 4.8E-10 76.5 25.1 318 25-361 522-898 (1233)
84 KOG2973 Uncharacterized conser 98.6 4.7E-05 1E-09 64.9 23.6 272 153-447 5-315 (353)
85 KOG4646 Uncharacterized conser 98.6 1.2E-06 2.5E-11 64.7 12.1 153 279-447 18-170 (173)
86 KOG4413 26S proteasome regulat 98.6 2.5E-05 5.4E-10 67.1 21.4 304 20-329 125-461 (524)
87 COG5181 HSH155 U2 snRNP splice 98.6 5.9E-06 1.3E-10 76.6 18.9 336 24-395 605-949 (975)
88 COG5369 Uncharacterized conser 98.6 3.6E-07 7.8E-12 83.0 11.0 305 128-445 408-739 (743)
89 TIGR02270 conserved hypothetic 98.6 2.6E-05 5.7E-10 72.1 22.9 241 24-349 55-296 (410)
90 COG5369 Uncharacterized conser 98.6 5.9E-07 1.3E-11 81.6 11.6 286 59-347 424-739 (743)
91 PF14664 RICTOR_N: Rapamycin-i 98.5 3.9E-05 8.4E-10 70.1 22.3 314 111-447 27-364 (371)
92 KOG0915 Uncharacterized conser 98.5 2E-05 4.2E-10 80.6 21.5 379 25-435 820-1233(1702)
93 KOG2259 Uncharacterized conser 98.5 7.5E-05 1.6E-09 70.1 22.6 222 156-393 203-440 (823)
94 KOG4646 Uncharacterized conser 98.5 6.5E-06 1.4E-10 60.9 12.4 127 20-150 13-140 (173)
95 KOG0915 Uncharacterized conser 98.5 0.00015 3.2E-09 74.5 26.0 343 37-393 971-1345(1702)
96 COG5231 VMA13 Vacuolar H+-ATPa 98.4 3.9E-05 8.5E-10 65.6 17.8 238 196-447 152-428 (432)
97 KOG1077 Vesicle coat complex A 98.4 0.00058 1.3E-08 64.9 26.9 297 25-349 113-433 (938)
98 COG5231 VMA13 Vacuolar H+-ATPa 98.4 2.4E-05 5.2E-10 66.8 16.3 231 73-307 156-428 (432)
99 COG1413 FOG: HEAT repeat [Ener 98.4 0.00018 4E-09 66.0 23.5 250 23-349 43-304 (335)
100 COG5240 SEC21 Vesicle coat com 98.4 0.00063 1.4E-08 63.2 24.7 352 35-448 202-556 (898)
101 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00011 2.4E-09 67.2 20.0 238 192-450 24-272 (371)
102 KOG1058 Vesicle coat complex C 98.3 0.0002 4.3E-09 68.4 21.4 319 74-450 107-466 (948)
103 PF12460 MMS19_C: RNAPII trans 98.3 0.0012 2.5E-08 62.4 27.1 347 25-396 1-398 (415)
104 COG5096 Vesicle coat complex, 98.3 0.0012 2.5E-08 64.9 27.0 139 26-182 58-196 (757)
105 TIGR02270 conserved hypothetic 98.3 0.00029 6.3E-09 65.3 21.8 209 25-307 88-296 (410)
106 KOG1240 Protein kinase contain 98.3 4.9E-05 1.1E-09 76.1 17.1 270 25-307 424-725 (1431)
107 PF00514 Arm: Armadillo/beta-c 98.3 1.7E-06 3.7E-11 51.4 4.7 41 98-138 1-41 (41)
108 KOG1077 Vesicle coat complex A 98.3 0.0034 7.4E-08 59.9 27.7 288 68-382 113-423 (938)
109 PF00514 Arm: Armadillo/beta-c 98.2 2.4E-06 5.2E-11 50.7 4.7 41 266-307 1-41 (41)
110 KOG2259 Uncharacterized conser 98.2 6.3E-05 1.4E-09 70.6 15.9 253 113-388 202-471 (823)
111 PF12348 CLASP_N: CLASP N term 98.2 1.3E-05 2.8E-10 69.1 10.9 186 244-446 16-205 (228)
112 PF05536 Neurochondrin: Neuroc 98.2 0.00013 2.9E-09 70.4 18.7 238 67-307 6-261 (543)
113 PF10165 Ric8: Guanine nucleot 98.2 0.00043 9.3E-09 65.4 21.7 270 56-329 12-356 (446)
114 COG1413 FOG: HEAT repeat [Ener 98.2 0.00036 7.8E-09 64.1 20.9 249 66-391 43-303 (335)
115 KOG1991 Nuclear transport rece 98.2 0.0046 9.9E-08 61.5 28.6 339 40-395 389-760 (1010)
116 KOG1240 Protein kinase contain 98.2 6.1E-05 1.3E-09 75.4 15.9 298 67-398 423-731 (1431)
117 KOG0211 Protein phosphatase 2A 98.2 0.00022 4.9E-09 70.3 18.9 351 19-391 272-663 (759)
118 PF12348 CLASP_N: CLASP N term 98.1 4.7E-05 1E-09 65.7 12.4 189 33-229 17-213 (228)
119 KOG1991 Nuclear transport rece 98.1 0.0066 1.4E-07 60.4 27.6 399 23-440 410-884 (1010)
120 PF13646 HEAT_2: HEAT repeats; 98.1 1.6E-05 3.6E-10 56.8 6.9 87 68-177 1-88 (88)
121 COG5240 SEC21 Vesicle coat com 98.0 0.0014 2.9E-08 61.1 19.6 285 68-391 266-554 (898)
122 KOG2734 Uncharacterized conser 98.0 0.0015 3.4E-08 58.7 19.3 226 19-245 121-371 (536)
123 KOG1943 Beta-tubulin folding c 98.0 0.021 4.6E-07 57.5 28.8 195 23-226 341-577 (1133)
124 PF13513 HEAT_EZ: HEAT-like re 98.0 1.5E-05 3.3E-10 51.0 5.2 55 292-347 1-55 (55)
125 PF12460 MMS19_C: RNAPII trans 98.0 0.0093 2E-07 56.3 25.6 300 36-351 56-396 (415)
126 KOG2274 Predicted importin 9 [ 98.0 0.0017 3.8E-08 63.6 20.5 314 34-361 461-792 (1005)
127 PF13646 HEAT_2: HEAT repeats; 98.0 2.4E-05 5.2E-10 55.9 6.4 87 195-303 1-88 (88)
128 KOG2734 Uncharacterized conser 98.0 0.0049 1.1E-07 55.6 21.3 222 191-426 123-369 (536)
129 KOG1248 Uncharacterized conser 97.9 0.0079 1.7E-07 61.1 24.9 237 155-396 657-902 (1176)
130 PF12755 Vac14_Fab1_bd: Vacuol 97.9 9.1E-05 2E-09 53.2 8.5 95 294-392 2-96 (97)
131 KOG2062 26S proteasome regulat 97.9 0.00077 1.7E-08 64.4 16.1 160 193-379 519-681 (929)
132 KOG4535 HEAT and armadillo rep 97.9 0.001 2.3E-08 60.4 15.7 225 206-444 362-600 (728)
133 KOG1943 Beta-tubulin folding c 97.9 0.016 3.5E-07 58.3 25.0 260 66-349 341-611 (1133)
134 PF10165 Ric8: Guanine nucleot 97.8 0.013 2.7E-07 55.7 23.2 230 34-266 43-339 (446)
135 PF13513 HEAT_EZ: HEAT-like re 97.8 2.3E-05 4.9E-10 50.1 3.0 55 249-305 1-55 (55)
136 PF11841 DUF3361: Domain of un 97.7 0.0013 2.8E-08 51.4 12.7 130 228-358 4-140 (160)
137 KOG1058 Vesicle coat complex C 97.7 0.0077 1.7E-07 58.1 20.1 339 25-397 101-468 (948)
138 KOG0567 HEAT repeat-containing 97.7 0.0066 1.4E-07 51.1 17.0 251 27-348 7-279 (289)
139 KOG4535 HEAT and armadillo rep 97.7 0.00077 1.7E-08 61.3 11.9 302 37-349 269-603 (728)
140 COG5096 Vesicle coat complex, 97.7 0.057 1.2E-06 53.5 25.2 167 118-307 28-195 (757)
141 PF09759 Atx10homo_assoc: Spin 97.6 0.00038 8.2E-09 49.9 7.2 67 83-149 2-70 (102)
142 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.00071 1.5E-08 48.6 8.6 94 251-348 2-95 (97)
143 smart00185 ARM Armadillo/beta- 97.6 0.00024 5.1E-09 42.1 5.2 39 99-137 2-40 (41)
144 KOG2274 Predicted importin 9 [ 97.5 0.035 7.5E-07 55.0 21.5 238 73-318 456-700 (1005)
145 PF08569 Mo25: Mo25-like; Int 97.5 0.0065 1.4E-07 54.7 15.3 209 229-451 70-287 (335)
146 KOG1078 Vesicle coat complex C 97.5 0.006 1.3E-07 59.1 15.7 141 192-348 390-531 (865)
147 KOG3036 Protein involved in ce 97.5 0.0062 1.3E-07 50.6 13.5 143 39-183 95-249 (293)
148 KOG1078 Vesicle coat complex C 97.5 0.13 2.8E-06 50.3 25.3 223 22-268 63-315 (865)
149 KOG4151 Myosin assembly protei 97.4 0.01 2.2E-07 57.8 16.8 239 143-388 496-737 (748)
150 KOG1248 Uncharacterized conser 97.4 0.0071 1.5E-07 61.4 15.9 232 121-361 666-910 (1176)
151 PF12717 Cnd1: non-SMC mitotic 97.4 0.0075 1.6E-07 49.5 13.8 93 248-350 1-93 (178)
152 PF08569 Mo25: Mo25-like; Int 97.4 0.0066 1.4E-07 54.7 14.3 202 104-307 71-283 (335)
153 smart00185 ARM Armadillo/beta- 97.4 0.00051 1.1E-08 40.6 5.1 38 268-306 3-40 (41)
154 PF12717 Cnd1: non-SMC mitotic 97.3 0.012 2.6E-07 48.3 14.3 109 81-203 2-111 (178)
155 PF09759 Atx10homo_assoc: Spin 97.3 0.0023 5.1E-08 45.9 8.3 68 251-318 2-70 (102)
156 PF11698 V-ATPase_H_C: V-ATPas 97.3 0.0013 2.9E-08 48.5 7.1 70 364-446 44-114 (119)
157 PF05004 IFRD: Interferon-rela 97.2 0.038 8.2E-07 49.6 17.1 191 25-221 45-256 (309)
158 PF11841 DUF3361: Domain of un 97.2 0.015 3.3E-07 45.5 12.5 126 270-397 4-136 (160)
159 PF05004 IFRD: Interferon-rela 97.2 0.067 1.5E-06 48.0 18.4 197 195-396 45-261 (309)
160 PF05918 API5: Apoptosis inhib 97.2 0.15 3.3E-06 48.9 21.4 296 69-396 26-349 (556)
161 KOG0567 HEAT repeat-containing 97.2 0.11 2.4E-06 44.0 17.9 203 61-307 62-280 (289)
162 PF04078 Rcd1: Cell differenti 97.2 0.0088 1.9E-07 50.8 11.5 176 41-220 68-260 (262)
163 KOG4653 Uncharacterized conser 97.2 0.014 3E-07 57.3 14.3 222 72-304 733-961 (982)
164 PRK14707 hypothetical protein; 97.2 0.57 1.2E-05 51.4 28.4 399 25-446 165-570 (2710)
165 PRK14707 hypothetical protein; 97.1 0.62 1.3E-05 51.2 27.9 381 37-441 137-523 (2710)
166 KOG1967 DNA repair/transcripti 97.1 0.006 1.3E-07 60.2 11.5 191 111-306 817-1023(1030)
167 KOG2032 Uncharacterized conser 97.1 0.26 5.5E-06 45.8 20.5 258 119-392 268-531 (533)
168 KOG4653 Uncharacterized conser 97.1 0.047 1E-06 53.8 16.8 226 155-393 731-965 (982)
169 KOG2062 26S proteasome regulat 97.1 0.25 5.4E-06 48.2 21.0 132 238-393 522-654 (929)
170 KOG4151 Myosin assembly protei 97.0 0.011 2.3E-07 57.7 12.3 234 20-259 501-736 (748)
171 PF05918 API5: Apoptosis inhib 97.0 0.36 7.8E-06 46.5 22.5 182 20-222 20-207 (556)
172 KOG0414 Chromosome condensatio 96.9 0.021 4.7E-07 58.0 13.4 160 66-247 919-1083(1251)
173 KOG3036 Protein involved in ce 96.9 0.035 7.6E-07 46.3 12.2 142 296-448 97-248 (293)
174 PF12719 Cnd3: Nuclear condens 96.9 0.024 5.2E-07 50.9 12.5 111 235-351 26-145 (298)
175 KOG0414 Chromosome condensatio 96.8 0.056 1.2E-06 55.2 15.7 149 188-352 914-1067(1251)
176 PF06025 DUF913: Domain of Unk 96.8 0.08 1.7E-06 48.9 15.8 221 86-318 3-243 (379)
177 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0025 5.3E-08 47.1 4.6 73 277-349 43-115 (119)
178 KOG2032 Uncharacterized conser 96.8 0.45 9.7E-06 44.3 20.8 160 174-338 239-405 (533)
179 KOG2025 Chromosome condensatio 96.8 0.22 4.7E-06 48.3 18.3 129 168-304 62-190 (892)
180 PF04078 Rcd1: Cell differenti 96.8 0.073 1.6E-06 45.4 13.7 146 297-449 69-220 (262)
181 COG5656 SXM1 Importin, protein 96.7 0.49 1.1E-05 46.4 20.0 301 40-354 387-716 (970)
182 PF06025 DUF913: Domain of Unk 96.7 0.35 7.6E-06 44.8 19.0 102 104-205 100-208 (379)
183 KOG2956 CLIP-associating prote 96.7 0.16 3.5E-06 46.7 15.9 147 152-307 330-477 (516)
184 KOG1967 DNA repair/transcripti 96.7 0.038 8.3E-07 54.8 12.8 155 192-348 866-1023(1030)
185 COG5116 RPN2 26S proteasome re 96.6 0.099 2.2E-06 49.2 14.7 155 197-376 520-675 (926)
186 PF12719 Cnd3: Nuclear condens 96.6 0.17 3.6E-06 45.5 16.3 172 66-248 26-210 (298)
187 PF11701 UNC45-central: Myosin 96.6 0.018 3.9E-07 46.0 8.6 136 246-389 16-156 (157)
188 KOG2956 CLIP-associating prote 96.3 0.43 9.4E-06 44.0 16.5 172 167-349 302-477 (516)
189 PF06371 Drf_GBD: Diaphanous G 96.3 0.03 6.5E-07 46.5 8.9 112 23-137 66-186 (187)
190 PF08045 CDC14: Cell division 96.3 0.15 3.3E-06 43.7 12.7 105 336-454 107-214 (257)
191 KOG1020 Sister chromatid cohes 96.2 2.1 4.6E-05 45.7 33.0 145 25-183 818-962 (1692)
192 KOG2025 Chromosome condensatio 96.2 0.47 1E-05 46.2 16.8 105 151-261 85-190 (892)
193 PF02985 HEAT: HEAT repeat; I 96.2 0.0077 1.7E-07 32.9 3.2 29 278-307 1-29 (31)
194 KOG3665 ZYG-1-like serine/thre 96.2 0.82 1.8E-05 46.1 19.3 176 258-446 494-696 (699)
195 KOG1020 Sister chromatid cohes 96.2 0.12 2.6E-06 54.4 13.5 165 169-350 794-961 (1692)
196 PF08045 CDC14: Cell division 96.0 0.16 3.4E-06 43.7 11.8 101 39-140 107-209 (257)
197 PF12530 DUF3730: Protein of u 96.0 0.91 2E-05 39.1 18.6 204 196-433 3-218 (234)
198 PF02985 HEAT: HEAT repeat; I 96.0 0.0096 2.1E-07 32.5 2.9 30 321-350 1-30 (31)
199 PF11701 UNC45-central: Myosin 96.0 0.2 4.4E-06 40.0 11.6 136 204-346 16-156 (157)
200 PF13764 E3_UbLigase_R4: E3 ub 95.9 2.2 4.8E-05 43.5 20.7 241 192-449 116-408 (802)
201 PF11865 DUF3385: Domain of un 95.9 0.14 3.1E-06 40.9 10.3 147 66-221 10-156 (160)
202 PF01603 B56: Protein phosphat 95.9 0.64 1.4E-05 43.8 16.2 260 43-316 110-379 (409)
203 KOG1566 Conserved protein Mo25 95.7 1.2 2.7E-05 39.0 15.8 203 146-352 74-289 (342)
204 KOG1243 Protein kinase [Genera 95.7 1.2 2.5E-05 43.6 17.0 194 190-397 327-520 (690)
205 KOG1243 Protein kinase [Genera 95.6 0.72 1.6E-05 45.0 15.5 188 106-307 327-515 (690)
206 PF11864 DUF3384: Domain of un 95.6 2.3 4.9E-05 41.0 30.2 252 36-306 42-329 (464)
207 PF11707 Npa1: Ribosome 60S bi 95.6 1.8 4E-05 39.5 18.5 157 237-393 58-238 (330)
208 PF11864 DUF3384: Domain of un 95.5 2.5 5.3E-05 40.8 25.4 290 37-349 4-330 (464)
209 KOG1820 Microtubule-associated 95.5 0.31 6.8E-06 49.3 13.2 192 195-396 255-447 (815)
210 KOG2933 Uncharacterized conser 95.5 0.086 1.9E-06 45.7 8.0 145 236-391 89-233 (334)
211 KOG1566 Conserved protein Mo25 95.5 1.6 3.6E-05 38.3 17.1 209 228-450 72-289 (342)
212 PF13251 DUF4042: Domain of un 95.4 0.48 1E-05 38.6 11.9 141 83-223 2-175 (182)
213 PF14668 RICTOR_V: Rapamycin-i 95.4 0.11 2.4E-06 34.9 6.7 67 252-320 4-70 (73)
214 KOG1820 Microtubule-associated 95.4 0.56 1.2E-05 47.6 14.5 193 115-316 259-453 (815)
215 cd03567 VHS_GGA VHS domain fam 95.3 0.12 2.7E-06 39.9 7.9 75 321-395 39-119 (139)
216 KOG1949 Uncharacterized conser 95.3 0.6 1.3E-05 45.4 13.7 236 148-391 126-369 (1005)
217 PF07814 WAPL: Wings apart-lik 95.3 2.1 4.7E-05 39.6 17.4 276 68-352 23-358 (361)
218 COG5116 RPN2 26S proteasome re 95.3 0.46 1E-05 45.0 12.7 156 27-208 520-677 (926)
219 COG5656 SXM1 Importin, protein 95.3 3.4 7.3E-05 40.9 26.0 279 108-396 407-715 (970)
220 COG5098 Chromosome condensatio 95.3 0.079 1.7E-06 51.0 7.8 134 247-396 908-1041(1128)
221 PF01603 B56: Protein phosphat 95.3 0.44 9.6E-06 44.9 12.9 237 22-271 132-377 (409)
222 PF08506 Cse1: Cse1; InterPro 95.2 0.62 1.3E-05 43.1 13.5 139 196-344 213-370 (370)
223 KOG1993 Nuclear transport rece 95.2 3.7 7.9E-05 41.0 22.6 304 37-352 501-815 (978)
224 cd03568 VHS_STAM VHS domain fa 95.0 0.17 3.7E-06 39.5 7.9 75 321-395 38-113 (144)
225 PF14668 RICTOR_V: Rapamycin-i 94.9 0.19 4E-06 33.8 6.7 67 40-109 4-70 (73)
226 KOG2611 Neurochondrin/leucine- 94.9 3.3 7.1E-05 38.7 17.1 230 71-306 16-273 (698)
227 COG5218 YCG1 Chromosome conden 94.9 3.9 8.4E-05 39.3 20.2 109 188-302 86-194 (885)
228 KOG2999 Regulator of Rac1, req 94.8 1.7 3.6E-05 41.3 14.7 165 193-359 83-252 (713)
229 PF11707 Npa1: Ribosome 60S bi 94.8 3.2 6.9E-05 37.9 22.3 170 271-451 51-241 (330)
230 PF14500 MMS19_N: Dos2-interac 94.8 2.6 5.7E-05 36.9 16.9 222 28-266 4-239 (262)
231 KOG3665 ZYG-1-like serine/thre 94.7 3.3 7E-05 42.0 17.8 194 132-344 494-692 (699)
232 cd03569 VHS_Hrs_Vps27p VHS dom 94.7 0.25 5.4E-06 38.6 8.0 75 321-395 42-117 (142)
233 PF13251 DUF4042: Domain of un 94.6 1.1 2.3E-05 36.6 11.8 145 251-395 2-177 (182)
234 PF14500 MMS19_N: Dos2-interac 94.6 2.9 6.4E-05 36.6 19.7 225 112-353 2-241 (262)
235 cd03568 VHS_STAM VHS domain fa 94.6 0.2 4.3E-06 39.2 7.2 81 364-456 38-119 (144)
236 KOG1949 Uncharacterized conser 94.5 0.61 1.3E-05 45.4 11.3 149 67-221 175-330 (1005)
237 PF12530 DUF3730: Protein of u 94.3 3.2 6.8E-05 35.8 17.8 202 68-289 2-215 (234)
238 PF13764 E3_UbLigase_R4: E3 ub 94.3 7.3 0.00016 39.9 21.8 240 64-306 115-405 (802)
239 COG5098 Chromosome condensatio 94.2 1.2 2.5E-05 43.5 12.5 168 205-395 908-1079(1128)
240 KOG2999 Regulator of Rac1, req 94.2 2.4 5.3E-05 40.2 14.2 158 25-186 85-247 (713)
241 PF07814 WAPL: Wings apart-lik 94.2 4.7 0.0001 37.4 16.5 95 22-119 20-116 (361)
242 PF01347 Vitellogenin_N: Lipop 94.1 2.3 4.9E-05 43.0 15.7 161 111-299 433-614 (618)
243 PF08167 RIX1: rRNA processing 94.0 0.32 6.9E-06 39.2 7.6 114 235-351 25-145 (165)
244 PLN03076 ARF guanine nucleotid 93.9 14 0.0003 41.8 25.4 270 28-307 1142-1489(1780)
245 PF10363 DUF2435: Protein of u 93.8 0.34 7.3E-06 34.5 6.5 73 24-100 4-76 (92)
246 cd03572 ENTH_epsin_related ENT 93.7 1.6 3.5E-05 32.8 10.3 104 328-449 9-121 (122)
247 KOG1848 Uncharacterized conser 93.7 5.1 0.00011 42.7 16.7 97 120-221 853-957 (1610)
248 PF10363 DUF2435: Protein of u 93.7 0.3 6.6E-06 34.7 6.1 84 237-331 5-88 (92)
249 PF03378 CAS_CSE1: CAS/CSE pro 93.7 5.7 0.00012 37.8 16.2 275 68-350 28-325 (435)
250 PF04063 DUF383: Domain of unk 93.6 0.89 1.9E-05 37.5 9.6 94 66-160 52-156 (192)
251 PF04063 DUF383: Domain of unk 93.4 1 2.2E-05 37.2 9.7 113 245-361 5-142 (192)
252 cd03569 VHS_Hrs_Vps27p VHS dom 93.4 0.49 1.1E-05 36.9 7.4 80 364-455 42-122 (142)
253 COG5209 RCD1 Uncharacterized p 93.3 0.64 1.4E-05 38.5 8.0 146 35-182 111-269 (315)
254 KOG2137 Protein kinase [Signal 93.0 4 8.7E-05 40.3 14.2 137 188-333 384-521 (700)
255 KOG2199 Signal transducing ada 92.8 0.26 5.7E-06 44.2 5.6 83 363-457 45-128 (462)
256 KOG2137 Protein kinase [Signal 92.7 3.3 7.2E-05 40.8 13.2 135 233-376 387-521 (700)
257 cd03561 VHS VHS domain family; 92.6 0.79 1.7E-05 35.4 7.5 76 321-396 38-116 (133)
258 PF12231 Rif1_N: Rap1-interact 92.5 9.1 0.0002 35.7 20.0 307 33-349 3-352 (372)
259 smart00288 VHS Domain present 92.4 0.85 1.8E-05 35.2 7.5 74 321-394 38-113 (133)
260 COG5218 YCG1 Chromosome conden 92.4 4.9 0.00011 38.7 13.4 110 18-140 86-198 (885)
261 KOG2933 Uncharacterized conser 92.4 1.4 3E-05 38.6 9.2 146 192-350 87-235 (334)
262 KOG2611 Neurochondrin/leucine- 92.2 10 0.00022 35.6 18.4 191 27-221 15-224 (698)
263 COG5209 RCD1 Uncharacterized p 92.2 0.69 1.5E-05 38.3 6.9 103 296-399 118-225 (315)
264 smart00638 LPD_N Lipoprotein N 92.1 11 0.00024 37.7 16.9 159 110-297 394-568 (574)
265 KOG1993 Nuclear transport rece 91.9 15 0.00033 36.9 21.2 321 23-354 526-869 (978)
266 PF12830 Nipped-B_C: Sister ch 91.8 6.5 0.00014 32.5 14.2 145 25-182 10-168 (187)
267 KOG1525 Sister chromatid cohes 91.8 22 0.00048 38.6 28.7 115 276-393 258-406 (1266)
268 PF14726 RTTN_N: Rotatin, an a 91.7 1.7 3.6E-05 31.3 7.6 70 361-444 28-97 (98)
269 PF12830 Nipped-B_C: Sister ch 91.6 6.8 0.00015 32.4 13.2 71 67-143 9-79 (187)
270 KOG1822 Uncharacterized conser 91.6 27 0.00058 39.1 21.3 231 68-306 878-1126(2067)
271 PF11865 DUF3385: Domain of un 91.6 3.6 7.8E-05 32.9 10.4 146 191-348 8-156 (160)
272 PF06371 Drf_GBD: Diaphanous G 91.4 1.6 3.5E-05 36.1 8.8 107 324-445 70-185 (187)
273 PF00790 VHS: VHS domain; Int 91.4 2 4.3E-05 33.6 8.6 74 321-394 43-120 (140)
274 PLN03076 ARF guanine nucleotid 91.3 31 0.00067 39.2 21.8 270 121-395 1149-1492(1780)
275 KOG1992 Nuclear export recepto 91.2 18 0.0004 36.6 17.7 188 185-373 490-705 (960)
276 smart00288 VHS Domain present 91.2 1 2.3E-05 34.7 6.8 74 23-96 37-111 (133)
277 cd03567 VHS_GGA VHS domain fam 91.0 1.2 2.6E-05 34.5 6.9 74 23-96 38-116 (139)
278 cd03561 VHS VHS domain family; 90.9 1.7 3.7E-05 33.6 7.8 74 23-96 37-112 (133)
279 KOG1832 HIV-1 Vpr-binding prot 90.8 6.8 0.00015 39.7 13.1 342 35-396 365-777 (1516)
280 KOG0413 Uncharacterized conser 90.7 23 0.00049 36.7 24.3 127 251-394 947-1075(1529)
281 cd03565 VHS_Tom1 VHS domain fa 90.0 3.6 7.9E-05 32.1 8.9 74 321-394 39-117 (141)
282 PF08506 Cse1: Cse1; InterPro 89.9 17 0.00036 33.8 19.6 146 231-386 206-369 (370)
283 PF08167 RIX1: rRNA processing 89.5 9.8 0.00021 30.7 11.4 117 66-186 25-148 (165)
284 PF13001 Ecm29: Proteasome sta 88.9 6.9 0.00015 38.2 11.9 218 164-395 249-491 (501)
285 PF08324 PUL: PUL domain; Int 88.5 11 0.00024 33.2 12.1 159 68-229 65-238 (268)
286 cd03572 ENTH_epsin_related ENT 88.3 9.2 0.0002 28.8 10.2 88 301-393 24-120 (122)
287 PF04388 Hamartin: Hamartin pr 88.1 21 0.00045 36.3 14.8 157 24-202 5-161 (668)
288 KOG4464 Signaling protein RIC- 87.3 13 0.00028 34.3 11.2 156 153-308 47-232 (532)
289 PF00790 VHS: VHS domain; Int 87.0 13 0.00027 29.0 11.0 79 364-454 43-125 (140)
290 KOG1992 Nuclear export recepto 87.0 38 0.00082 34.5 27.0 327 34-396 16-395 (960)
291 KOG1525 Sister chromatid cohes 86.8 52 0.0011 35.9 20.8 126 319-447 258-405 (1266)
292 smart00638 LPD_N Lipoprotein N 86.8 36 0.00078 34.0 17.3 162 192-384 392-570 (574)
293 cd03565 VHS_Tom1 VHS domain fa 86.6 13 0.00029 28.9 10.4 80 364-455 39-123 (141)
294 KOG0891 DNA-dependent protein 86.6 7.3 0.00016 44.8 11.5 269 31-307 489-763 (2341)
295 PF10521 DUF2454: Protein of u 86.2 13 0.00029 33.1 11.2 138 67-205 120-277 (282)
296 PF10521 DUF2454: Protein of u 86.2 22 0.00048 31.7 12.6 118 277-395 119-256 (282)
297 PF08324 PUL: PUL domain; Int 84.5 3.2 6.9E-05 36.7 6.5 134 34-170 121-263 (268)
298 PF12031 DUF3518: Domain of un 84.1 2.5 5.5E-05 35.7 5.2 83 37-121 138-228 (257)
299 PF01347 Vitellogenin_N: Lipop 83.9 52 0.0011 33.3 17.6 197 110-342 396-615 (618)
300 PF12463 DUF3689: Protein of u 83.9 32 0.00068 30.8 13.7 105 293-397 47-178 (303)
301 PF12074 DUF3554: Domain of un 83.6 18 0.0004 33.2 11.3 219 63-289 19-256 (339)
302 PF04499 SAPS: SIT4 phosphatas 83.4 11 0.00024 36.3 9.8 116 276-395 20-151 (475)
303 PF09758 FPL: Uncharacterised 82.7 12 0.00025 29.4 7.9 124 98-221 15-148 (149)
304 KOG2005 26S proteasome regulat 82.5 54 0.0012 32.6 15.7 290 24-355 416-710 (878)
305 cd00197 VHS_ENTH_ANTH VHS, ENT 82.4 7.1 0.00015 29.1 6.8 70 321-390 38-113 (115)
306 KOG1788 Uncharacterized conser 82.3 72 0.0016 33.8 17.5 288 21-329 464-783 (2799)
307 PF10274 ParcG: Parkin co-regu 81.8 26 0.00056 28.6 9.9 73 152-225 39-112 (183)
308 PF12031 DUF3518: Domain of un 81.4 3.5 7.6E-05 34.9 5.0 79 82-161 139-226 (257)
309 PF12231 Rif1_N: Rap1-interact 81.4 47 0.001 31.0 24.0 220 165-393 59-304 (372)
310 KOG2199 Signal transducing ada 80.9 12 0.00025 34.2 8.2 72 321-392 46-118 (462)
311 KOG0392 SNF2 family DNA-depend 80.7 25 0.00054 37.6 11.5 235 23-266 77-327 (1549)
312 KOG2038 CAATT-binding transcri 80.2 71 0.0015 32.4 18.6 103 67-180 305-408 (988)
313 PF12726 SEN1_N: SEN1 N termin 79.0 85 0.0018 32.5 26.9 109 322-448 443-554 (727)
314 PF13001 Ecm29: Proteasome sta 78.7 69 0.0015 31.4 25.4 162 278-452 320-493 (501)
315 KOG0891 DNA-dependent protein 78.6 78 0.0017 37.2 15.4 251 126-392 461-719 (2341)
316 PF10274 ParcG: Parkin co-regu 78.4 36 0.00077 27.9 10.9 72 277-350 38-110 (183)
317 PF06685 DUF1186: Protein of u 77.0 49 0.0011 28.7 13.5 103 38-159 57-161 (249)
318 PF11229 DUF3028: Protein of u 76.3 76 0.0016 30.5 13.0 236 150-394 96-355 (589)
319 PF14225 MOR2-PAG1_C: Cell mor 76.1 54 0.0012 28.8 17.4 176 66-263 64-253 (262)
320 PF14225 MOR2-PAG1_C: Cell mor 76.0 55 0.0012 28.8 18.4 180 109-306 64-253 (262)
321 KOG1087 Cytosolic sorting prot 75.6 19 0.0004 34.4 8.5 76 321-396 39-116 (470)
322 cd08050 TAF6 TATA Binding Prot 75.5 27 0.00059 32.1 9.5 112 192-305 209-338 (343)
323 PF08767 CRM1_C: CRM1 C termin 74.3 69 0.0015 29.2 13.8 179 251-446 43-243 (319)
324 KOG0413 Uncharacterized conser 73.8 1.2E+02 0.0027 31.8 19.7 145 37-201 945-1091(1529)
325 cd00197 VHS_ENTH_ANTH VHS, ENT 73.8 34 0.00074 25.4 10.5 70 364-445 38-113 (115)
326 PF11791 Aconitase_B_N: Aconit 73.1 15 0.00032 28.7 5.9 49 293-352 78-126 (154)
327 PF04821 TIMELESS: Timeless pr 72.7 56 0.0012 28.8 10.4 75 376-450 133-211 (266)
328 KOG1988 Uncharacterized conser 72.6 1.2E+02 0.0026 31.3 15.8 251 26-307 27-281 (970)
329 PF09324 DUF1981: Domain of un 72.5 11 0.00024 26.4 4.9 71 148-218 14-84 (86)
330 PF14726 RTTN_N: Rotatin, an a 71.6 35 0.00076 24.6 8.4 68 64-133 28-95 (98)
331 PF11791 Aconitase_B_N: Aconit 71.6 30 0.00064 27.1 7.2 100 195-307 24-123 (154)
332 PF06685 DUF1186: Protein of u 71.4 69 0.0015 27.8 14.2 130 233-368 71-202 (249)
333 PF12726 SEN1_N: SEN1 N termin 71.3 1.2E+02 0.0026 31.5 13.9 142 27-183 445-587 (727)
334 PF04499 SAPS: SIT4 phosphatas 69.8 57 0.0012 31.6 10.5 82 269-350 54-149 (475)
335 KOG1822 Uncharacterized conser 69.5 2.1E+02 0.0046 32.7 22.0 272 111-391 878-1188(2067)
336 KOG0889 Histone acetyltransfer 69.2 2.6E+02 0.0055 34.4 16.3 179 189-373 1122-1329(3550)
337 PF04388 Hamartin: Hamartin pr 68.4 1.2E+02 0.0025 31.1 12.8 92 236-330 71-162 (668)
338 PF01417 ENTH: ENTH domain; I 68.1 50 0.0011 25.0 8.7 101 329-448 12-122 (125)
339 KOG4464 Signaling protein RIC- 67.9 1.1E+02 0.0023 28.7 19.1 81 81-161 111-197 (532)
340 KOG2229 Protein required for a 67.6 36 0.00079 32.4 8.2 128 259-396 3-133 (616)
341 PF12054 DUF3535: Domain of un 67.5 51 0.0011 31.6 9.6 79 37-120 101-179 (441)
342 PF09324 DUF1981: Domain of un 67.2 16 0.00034 25.7 4.7 66 274-344 14-83 (86)
343 KOG0301 Phospholipase A2-activ 67.0 1.4E+02 0.0031 29.8 17.3 161 81-246 558-727 (745)
344 PF08389 Xpo1: Exportin 1-like 66.7 42 0.00091 26.1 7.8 49 207-259 100-148 (148)
345 KOG2149 Uncharacterized conser 66.2 60 0.0013 30.1 9.2 131 237-372 60-191 (393)
346 PF12783 Sec7_N: Guanine nucle 66.2 59 0.0013 26.2 8.7 106 37-146 36-154 (168)
347 KOG2549 Transcription initiati 65.2 1.4E+02 0.003 29.1 11.8 140 155-306 211-369 (576)
348 KOG0392 SNF2 family DNA-depend 65.1 2.1E+02 0.0045 31.3 13.6 180 207-396 143-329 (1549)
349 smart00509 TFS2N Domain in the 63.5 40 0.00086 22.9 6.0 50 381-444 19-68 (75)
350 PF03378 CAS_CSE1: CAS/CSE pro 62.3 1.5E+02 0.0032 28.4 12.7 261 121-394 42-326 (435)
351 KOG1848 Uncharacterized conser 61.0 2.5E+02 0.0054 31.0 13.5 54 296-349 1071-1132(1610)
352 KOG4524 Uncharacterized conser 60.9 54 0.0012 34.1 8.6 94 23-119 803-899 (1014)
353 KOG2676 Uncharacterized conser 60.0 14 0.00031 33.3 4.1 62 87-148 376-439 (478)
354 KOG2140 Uncharacterized conser 60.0 1.1E+02 0.0024 29.5 9.9 117 313-451 231-347 (739)
355 PF06012 DUF908: Domain of Unk 59.2 46 0.00099 30.5 7.5 75 40-116 239-323 (329)
356 KOG2149 Uncharacterized conser 59.1 80 0.0017 29.3 8.7 132 152-287 59-192 (393)
357 KOG2038 CAATT-binding transcri 58.7 2.2E+02 0.0048 29.2 17.3 92 34-137 315-408 (988)
358 PF12054 DUF3535: Domain of un 57.8 1.8E+02 0.0039 27.9 13.0 109 123-236 101-211 (441)
359 smart00802 UME Domain in UVSB 57.4 67 0.0014 23.7 6.6 80 277-361 11-95 (107)
360 PF08064 UME: UME (NUC010) dom 57.2 68 0.0015 23.6 6.8 79 277-360 11-94 (107)
361 PF12074 DUF3554: Domain of un 56.9 1.6E+02 0.0035 27.0 18.2 212 126-352 4-238 (339)
362 PF08711 Med26: TFIIS helical 56.7 32 0.00069 21.3 4.3 34 411-444 13-47 (53)
363 smart00567 EZ_HEAT E-Z type HE 56.6 14 0.0003 19.5 2.4 14 293-306 2-15 (30)
364 PF09758 FPL: Uncharacterised 56.5 14 0.0003 29.0 3.1 125 266-390 15-147 (149)
365 cd00183 TFIIS_I N-terminal dom 55.8 62 0.0014 22.0 6.0 34 411-444 37-70 (76)
366 KOG1087 Cytosolic sorting prot 55.7 34 0.00073 32.8 6.1 73 23-95 38-111 (470)
367 COG5101 CRM1 Importin beta-rel 55.5 2.3E+02 0.005 28.4 18.6 116 237-355 483-605 (1053)
368 PF01365 RYDR_ITPR: RIH domain 55.2 52 0.0011 27.6 6.8 119 271-395 37-172 (207)
369 KOG2011 Sister chromatid cohes 55.2 3E+02 0.0065 29.6 14.4 132 291-445 300-433 (1048)
370 PF08216 CTNNBL: Catenin-beta- 55.2 14 0.00031 27.0 2.8 40 43-85 66-105 (108)
371 PF04064 DUF384: Domain of unk 54.1 56 0.0012 20.9 5.4 43 410-452 11-54 (58)
372 KOG2011 Sister chromatid cohes 53.0 2E+02 0.0043 30.9 11.2 97 330-442 297-394 (1048)
373 PF12463 DUF3689: Protein of u 52.8 1.8E+02 0.0038 26.3 9.8 85 233-317 93-183 (303)
374 KOG2676 Uncharacterized conser 51.7 14 0.0003 33.3 2.7 56 128-183 375-431 (478)
375 PF08216 CTNNBL: Catenin-beta- 51.5 21 0.00045 26.2 3.1 42 84-126 63-104 (108)
376 KOG1086 Cytosolic sorting prot 50.6 25 0.00053 32.6 4.1 129 323-451 48-206 (594)
377 KOG2549 Transcription initiati 49.8 2.6E+02 0.0057 27.4 13.4 140 113-263 211-369 (576)
378 KOG0803 Predicted E3 ubiquitin 48.7 4.3E+02 0.0093 29.5 14.2 200 237-445 43-261 (1312)
379 KOG4524 Uncharacterized conser 48.0 1E+02 0.0022 32.3 8.2 96 190-287 800-899 (1014)
380 KOG1832 HIV-1 Vpr-binding prot 47.6 53 0.0011 33.9 6.1 72 36-109 675-785 (1516)
381 KOG1788 Uncharacterized conser 47.0 4E+02 0.0088 28.8 16.0 51 111-161 468-519 (2799)
382 cd08050 TAF6 TATA Binding Prot 46.4 2.4E+02 0.0052 26.0 12.5 110 152-262 211-338 (343)
383 PF06012 DUF908: Domain of Unk 46.3 1.1E+02 0.0023 28.1 7.7 65 82-147 237-306 (329)
384 KOG1924 RhoA GTPase effector D 45.9 3.6E+02 0.0077 27.8 14.3 113 322-442 236-359 (1102)
385 PF03130 HEAT_PBS: PBS lyase H 45.6 37 0.0008 17.5 2.8 13 294-306 1-13 (27)
386 PF08713 DNA_alkylation: DNA a 45.0 43 0.00093 28.2 4.8 83 236-326 121-205 (213)
387 PF13925 Katanin_con80: con80 44.8 1.6E+02 0.0036 23.6 8.1 72 150-222 27-98 (164)
388 PF08064 UME: UME (NUC010) dom 44.1 94 0.002 22.8 5.8 72 320-397 11-88 (107)
389 PF12765 Cohesin_HEAT: HEAT re 41.3 19 0.00041 21.1 1.4 24 235-258 18-41 (42)
390 PLN03205 ATR interacting prote 40.5 3.1E+02 0.0068 25.6 11.9 162 190-352 320-519 (652)
391 KOG0301 Phospholipase A2-activ 40.4 4E+02 0.0088 26.9 16.4 162 204-373 555-726 (745)
392 KOG2073 SAP family cell cycle 40.2 4.7E+02 0.01 27.6 16.1 173 192-374 189-376 (838)
393 PF04869 Uso1_p115_head: Uso1 40.2 2.9E+02 0.0062 25.1 16.5 184 236-426 35-261 (312)
394 KOG1410 Nuclear transport rece 40.0 4.2E+02 0.0091 26.9 21.5 276 153-445 7-332 (1082)
395 KOG1791 Uncharacterized conser 38.6 6.3E+02 0.014 28.6 13.7 119 273-393 1536-1661(1758)
396 PF04869 Uso1_p115_head: Uso1 38.4 3.1E+02 0.0067 24.9 15.7 150 291-453 51-237 (312)
397 PF14663 RasGEF_N_2: Rapamycin 38.3 68 0.0015 24.0 4.3 39 67-107 9-47 (115)
398 PF04064 DUF384: Domain of unk 38.1 1.1E+02 0.0023 19.6 5.0 44 352-395 8-52 (58)
399 PF04510 DUF577: Family of unk 37.4 2.2E+02 0.0049 23.0 11.7 151 238-394 6-166 (174)
400 KOG2005 26S proteasome regulat 37.2 4.6E+02 0.01 26.6 16.4 78 190-269 45-130 (878)
401 PF07923 N1221: N1221-like pro 36.6 49 0.0011 29.7 4.0 55 319-373 59-126 (293)
402 KOG0889 Histone acetyltransfer 36.0 9.9E+02 0.021 30.1 18.6 298 24-328 985-1327(3550)
403 KOG2152 Sister chromatid cohes 35.7 4.7E+02 0.01 26.8 10.3 64 139-203 363-426 (865)
404 PF08389 Xpo1: Exportin 1-like 35.5 64 0.0014 25.0 4.1 63 278-344 83-148 (148)
405 PF01365 RYDR_ITPR: RIH domain 34.9 97 0.0021 26.0 5.3 95 250-350 76-170 (207)
406 PF04821 TIMELESS: Timeless pr 34.7 3.2E+02 0.007 24.1 15.1 63 20-96 10-72 (266)
407 smart00802 UME Domain in UVSB 34.2 1.7E+02 0.0036 21.6 5.7 72 320-397 11-88 (107)
408 PRK09169 hypothetical protein; 34.2 8.8E+02 0.019 29.0 28.3 107 25-135 165-274 (2316)
409 KOG2073 SAP family cell cycle 31.4 6.5E+02 0.014 26.6 13.5 39 144-182 183-221 (838)
410 KOG0803 Predicted E3 ubiquitin 31.4 7.9E+02 0.017 27.6 18.6 253 23-287 41-330 (1312)
411 COG5537 IRR1 Cohesin [Cell div 30.9 5.6E+02 0.012 25.7 12.4 136 121-266 287-424 (740)
412 PF13981 SopA: SopA-like centr 30.8 1.4E+02 0.003 23.1 5.0 36 419-454 95-130 (135)
413 KOG2085 Serine/threonine prote 30.7 4.7E+02 0.01 24.7 11.5 47 99-145 167-213 (457)
414 PF14631 FancD2: Fanconi anaem 30.3 8.7E+02 0.019 27.8 17.3 101 242-349 442-542 (1426)
415 PF14228 MOR2-PAG1_mid: Cell m 30.3 7.8E+02 0.017 27.2 18.6 70 109-183 196-277 (1120)
416 PF10257 RAI16-like: Retinoic 30.1 4.5E+02 0.0098 24.4 12.0 130 229-361 3-169 (353)
417 PF07923 N1221: N1221-like pro 29.5 1.7E+02 0.0037 26.2 6.2 60 18-77 55-127 (293)
418 PF08767 CRM1_C: CRM1 C termin 29.4 4.4E+02 0.0096 24.0 17.2 178 168-348 43-243 (319)
419 KOG2022 Nuclear transport rece 29.0 7.1E+02 0.015 26.3 15.8 134 208-352 482-622 (982)
420 PF14868 DUF4487: Domain of un 28.7 4E+02 0.0086 26.6 8.8 75 278-352 480-555 (559)
421 PF14631 FancD2: Fanconi anaem 28.2 2.5E+02 0.0054 31.8 8.1 129 162-297 445-573 (1426)
422 PF12243 CTK3: CTD kinase subu 28.1 2.9E+02 0.0063 21.5 7.8 58 281-349 12-69 (139)
423 cd06561 AlkD_like A new struct 28.1 1.4E+02 0.0031 24.6 5.2 74 238-318 108-181 (197)
424 KOG2213 Apoptosis inhibitor 5/ 27.0 5.3E+02 0.012 24.2 15.0 214 210-443 4-222 (460)
425 TIGR03504 FimV_Cterm FimV C-te 26.7 1.2E+02 0.0026 18.1 3.1 28 417-444 16-43 (44)
426 PF12783 Sec7_N: Guanine nucle 25.9 3.5E+02 0.0075 21.7 8.8 77 231-308 69-147 (168)
427 KOG4231 Intracellular membrane 25.3 1.3E+02 0.0027 29.1 4.6 71 236-307 329-399 (763)
428 PF14676 FANCI_S2: FANCI solen 25.0 3.1E+02 0.0068 21.9 6.2 81 255-345 75-157 (158)
429 PLN03205 ATR interacting prote 24.8 2.5E+02 0.0054 26.2 6.1 113 236-348 324-445 (652)
430 PF12397 U3snoRNP10: U3 small 24.2 3.1E+02 0.0067 20.5 9.9 69 191-265 4-75 (121)
431 cd06561 AlkD_like A new struct 23.9 3.3E+02 0.0073 22.3 6.7 66 280-352 108-173 (197)
432 cd03562 CID CID (CTD-Interacti 23.1 3.1E+02 0.0067 20.2 7.1 87 164-259 17-103 (114)
433 PF09450 DUF2019: Domain of un 22.6 12 0.00027 27.2 -1.8 26 25-50 49-74 (106)
434 PF11935 DUF3453: Domain of un 22.6 4.8E+02 0.01 22.5 7.5 70 371-445 1-70 (239)
435 KOG2085 Serine/threonine prote 22.4 6.7E+02 0.015 23.7 13.9 77 59-137 170-247 (457)
436 PF14663 RasGEF_N_2: Rapamycin 22.0 3.4E+02 0.0074 20.2 10.3 39 321-361 9-47 (115)
437 PF08623 TIP120: TATA-binding 21.3 2.2E+02 0.0047 23.1 4.7 92 124-220 42-145 (169)
438 PF01465 GRIP: GRIP domain; I 21.2 2E+02 0.0044 17.2 4.1 34 239-272 11-44 (46)
439 PF12397 U3snoRNP10: U3 small 20.8 3.6E+02 0.0079 20.1 10.6 69 152-223 7-75 (121)
440 cd03562 CID CID (CTD-Interacti 20.8 3.5E+02 0.0076 19.9 7.7 86 291-387 18-103 (114)
441 KOG2219 Uncharacterized conser 20.3 2.1E+02 0.0046 28.5 5.1 68 331-398 38-109 (864)
442 PF07539 DRIM: Down-regulated 20.1 2E+02 0.0043 22.5 4.2 35 411-445 10-44 (141)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-62 Score=440.28 Aligned_cols=425 Identities=65% Similarity=0.990 Sum_probs=403.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
.+..++.+.|+++..+..+...++++.+.+..++...++..|++|.|++.+...+.+.++..|+|+|.|++.++++....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 78889999999999999999999999999878889999999999999999987666999999999999999999999999
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-
Q 043950 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK- 183 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~- 183 (458)
+++.|.+|.++.++.+++..++++|+|+|+|++.+++.+|+.+++.|++++|+.++..+....+.+++.|+|+|||++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999965555579999999999999998
Q ss_pred CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhh
Q 043950 184 PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV 263 (458)
Q Consensus 184 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~ 263 (458)
|.+....+..++|.|..++++.|+++...++|++++++.++++.++.+++.|+++.|+.+|.+.+..++..|+++++|++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHH
Q 043950 264 MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALA 343 (458)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~ 343 (458)
.+++.+++.+++.|+++.|..++...+...+|++|+|+++|++.|++++++.+++.|++|.|++++++.+.++|++|+|+
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999965477899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHH
Q 043950 344 IANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI 423 (458)
Q Consensus 344 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 423 (458)
++|++.++++++..++++.|+++.++++|.-+|.++...++.++.++++.++..... +. +++...++++||++++
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKI 462 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHH
Confidence 999999999999999999999999999999999999999999999999999987532 11 7899999999999999
Q ss_pred HhhhcCCChHHHHHHHHHHHHhcCCCCCCCC
Q 043950 424 EGLKSHDNNGIREKAVKILETYWCGRVVGPQ 454 (458)
Q Consensus 424 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 454 (458)
..|++|++.++++.|..++++||..|++++.
T Consensus 463 E~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~ 493 (514)
T KOG0166|consen 463 ENLQSHENEEIYKKAYKIIDTYFSEEDDEDD 493 (514)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCccccc
Confidence 9999999999999999999999999866553
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.8e-60 Score=396.12 Aligned_cols=426 Identities=56% Similarity=0.851 Sum_probs=397.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
.-+|.+.+.|.|+|.+.++.|..-++++++.+..++++.++++|++|.+++++........+.+|+|+|.|++++.....
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 45799999999999999999999999999999889999999999999999999655436789999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc-cHHHHHHHHHHHHHhhc
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA-KLSMLRIATWTLSKLCK 181 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~l~~l~~ 181 (458)
..+++.|.+|.++++|.+++.+++++++|+|+|++.+++.+|+.+.+.|++++++.++..+. +..+.+.+.|+|+|||+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999996443 35899999999999999
Q ss_pred CC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 182 GK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 182 ~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
.. |.+....+...+|.|.+++.+.|+++...++|++++++..+.+.++.+++.|+.+.|+++|.+++..++..|++.++
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 88 77777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA 340 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a 340 (458)
|+..+++.+.+.+++.|+++.+..+|+++ ...+|++|||+++|+..++.++++.+++.+++|+|+++|+..+..++++|
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC--CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcc
Q 043950 341 ALAIANATVRG--THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDE 418 (458)
Q Consensus 341 ~~~L~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (458)
+|++.|.+.++ .++.++++++.|+++.|+++|.-.+..+.+.+++++.++++.++....... ...|.|...+++.|
T Consensus 390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~Ag 467 (526)
T COG5064 390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKAG 467 (526)
T ss_pred HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhcc
Confidence 99999999875 568899999999999999999999988999999999999998887654421 13566888898999
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950 419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
|++.+..++++.|.+++.+|-.++++||.+|+.
T Consensus 468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~ 500 (526)
T COG5064 468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA 500 (526)
T ss_pred cHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence 999999999999999999999999999987754
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-49 Score=352.30 Aligned_cols=390 Identities=25% Similarity=0.402 Sum_probs=346.8
Q ss_pred ccccCCCCCCCCChhhHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH
Q 043950 4 SQRFLPSAPRPSLNLQTKLEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ 82 (458)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 82 (458)
||+++++...||-......|.+|.+|+.|.. +++.+|++|+|+|.+++++. ++..+.+++.|.+|.|++++.+++ .+
T Consensus 90 ~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~ 167 (514)
T KOG0166|consen 90 FRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-AD 167 (514)
T ss_pred HHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HH
Confidence 5566666666666666777999999999985 55999999999999999987 788899999999999999999999 89
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc
Q 043950 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN 161 (458)
Q Consensus 83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~ 161 (458)
++++|+|+|+|++.+++.+|+.+++.|+++.|+.++..... ...++++|+|+|+|++.......-.-..+++.|..++
T Consensus 168 v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll- 246 (514)
T KOG0166|consen 168 VREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL- 246 (514)
T ss_pred HHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999988665 7888999999999977622222222345788888888
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH
Q 043950 162 EHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL 240 (458)
Q Consensus 162 ~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L 240 (458)
++.|+++...++|++++|+.+.+.. ......|++|.++.+|.+.+..++..++++++|++.+++.+.+.+++.|+++.|
T Consensus 247 ~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l 326 (514)
T KOG0166|consen 247 HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVL 326 (514)
T ss_pred hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHH
Confidence 8999999999999999999887444 444458999999999999999999999999999999999999999999999999
Q ss_pred HHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHH
Q 043950 241 VELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVID 318 (458)
Q Consensus 241 ~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~ 318 (458)
..++. ++...+++.|+|+++|++.++.++++.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++
T Consensus 327 ~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~ 405 (514)
T KOG0166|consen 327 SNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVE 405 (514)
T ss_pred HHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 99999 56677999999999999999999999999999999999999999 99999999999999997 78999999999
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC-------HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT-------HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~ 391 (458)
.|++++++++|.-.|.++...++.++.++...+. ......+-+.|+++.+..+-.+++.++...|...+.++|
T Consensus 406 ~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 406 QGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred cCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhc
Confidence 9999999999998999999999999999987542 234566778999999999999999999999999999999
Q ss_pred Hhchhh
Q 043950 392 KVGEAE 397 (458)
Q Consensus 392 ~~~~~~ 397 (458)
..++..
T Consensus 486 ~~e~~~ 491 (514)
T KOG0166|consen 486 SEEDDE 491 (514)
T ss_pred CCCccc
Confidence 876443
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-48 Score=323.10 Aligned_cols=388 Identities=25% Similarity=0.365 Sum_probs=341.8
Q ss_pred cccccCCCCCCCCChhhHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCH
Q 043950 3 QSQRFLPSAPRPSLNLQTKLEILPAMVAGV-WSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYP 81 (458)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 81 (458)
.||+.|+.+..||-......|.+|++++++ ..+..-.+++|+|+|.+++++. ....+.+++.|.+|.++++|.+++ .
T Consensus 94 kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~ 171 (526)
T COG5064 94 KFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-D 171 (526)
T ss_pred HHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-H
Confidence 477788888888877888899999999999 4667778999999999999987 677888899999999999999999 8
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHH
Q 043950 82 QLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQ 159 (458)
Q Consensus 82 ~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~ 159 (458)
+++++++|+|+|++.+++.+|+.+.+.|++..++.++.+.. ..+.+++.|+|+|+|++.....+.-.-...++.|.++
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 4788999999999997652211211112357777777
Q ss_pred hcccccHHHHHHHHHHHHHhhcCCCCCCh-hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHH
Q 043950 160 LNEHAKLSMLRIATWTLSKLCKGKPQPPF-DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238 (458)
Q Consensus 160 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~ 238 (458)
+ .+.|+++...|+|++++|+........ ....|+.+.|+++|.+++..++..+++.++|+...++.+.+.+++.|+++
T Consensus 252 i-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 252 I-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred H-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH
Confidence 7 899999999999999999988643333 33378888899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC---CHHHHHH
Q 043950 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG---NREQIQA 315 (458)
Q Consensus 239 ~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~~~ 315 (458)
.+..+|.++...+|+.|||+++|+..++.++.+.+++.+++|+|+.+|.+. +..++++|||+++|..++ -|+.+.+
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iry 409 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRY 409 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999873 5788999
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCH----------HHHHHHHHCCChHHHHhhccCCCHHHHHHHHH
Q 043950 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH----------EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385 (458)
Q Consensus 316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~ 385 (458)
+++.|++.+|+++|...+.++.+-++.++.|+...+.. .+..++.+.|+++.+..+.++.+..+..++..
T Consensus 410 Lv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYs 489 (526)
T COG5064 410 LVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYS 489 (526)
T ss_pred HHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHH
Confidence 99999999999999999998999999999999886632 34455566899999999999999999999999
Q ss_pred HHHHHHHhc
Q 043950 386 GLENILKVG 394 (458)
Q Consensus 386 ~l~~l~~~~ 394 (458)
++..+|..+
T Consensus 490 IIe~fFgee 498 (526)
T COG5064 490 IIEKFFGEE 498 (526)
T ss_pred HHHHHcccc
Confidence 999998543
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=338.21 Aligned_cols=411 Identities=21% Similarity=0.213 Sum_probs=344.1
Q ss_pred hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950 19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT 98 (458)
Q Consensus 19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 98 (458)
....|.+|.++++|+++++..|..|+++|.+++... .+....+++.|++|.|++++.+++++.+|+.|+|+|++++.++
T Consensus 185 IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s 263 (2102)
T PLN03200 185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQS 263 (2102)
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCC
Confidence 456799999999999999999999999998887764 5678889999999999999987654799999999999999999
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhcCCCc-----------hhhH---HhhhCCHHH
Q 043950 99 SMNTNVVIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAADSPG-----------CRNL---VLREEALIP 155 (458)
Q Consensus 99 ~~~~~~~~~~~~i~~L~~ll~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~~---~~~~~~l~~ 155 (458)
+++++.+++.|+++.|++++.+++ ..++++++|+|+|+|.+.+. .++. ....|++.+
T Consensus 264 ~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALay 343 (2102)
T PLN03200 264 KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAY 343 (2102)
T ss_pred HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHH
Confidence 999999999999999999998654 34699999999999986433 1111 133477777
Q ss_pred HHHHhcccccHHHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhhhHHHHHHhhcCCChHHHH
Q 043950 156 LLAQLNEHAKLSML----RIATWTLSKLCKGK-PQPPFDQ-------------------VRPALPALAQLIHLDDEEVLS 211 (458)
Q Consensus 156 l~~~l~~~~~~~~~----~~a~~~l~~l~~~~-~~~~~~~-------------------~~~~l~~l~~ll~~~~~~~~~ 211 (458)
++..+ +.++...+ ..++|+|.+|+++. +...... ..++++.|+.++...+.+++.
T Consensus 344 ll~l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~ 422 (2102)
T PLN03200 344 ALMVF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE 422 (2102)
T ss_pred HHHhc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence 87777 33333333 25679999999876 3221211 134567788888889999999
Q ss_pred HHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCCh
Q 043950 212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHK 291 (458)
Q Consensus 212 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 291 (458)
.++++|++++.++.+..+.+.+.|+++.|+++|.+++..++..|++++++++.++++.+..+++.|++|.|+++|.++ +
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~ 501 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-S 501 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-C
Confidence 999999999998888899999999999999999999999999999999999998988889999999999999999998 9
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 043950 292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL 371 (458)
Q Consensus 292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l 371 (458)
.+++++|+|+|+|++.++++....+.+.|+++.|+++|.+++.++++.|+++|.+++..++.+. ++.++.+
T Consensus 502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~L 572 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTAL 572 (2102)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHH
Confidence 9999999999999998754444444478999999999999999999999999999998766553 3667888
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950 372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 372 l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
+.++++.++..++.++.+++...+.... ........||++.|.+|+.++++++++.|.++|.+||.+...
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~----------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDL----------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHH----------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 9999999999999999999876554320 122234679999999999999999999999999999986643
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=327.37 Aligned_cols=418 Identities=19% Similarity=0.183 Sum_probs=369.7
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
..++++.|+.+++..+.++|..++++|..++.++ .+.++.+.+.|++|.|+++|.+++ +.+|..|++.+++++.++++
T Consensus 402 ~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 402 HAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred hccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHH
Confidence 3467889999999999999999999999997765 788999999999999999999988 89999999999999998889
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
.+..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+..+ .+.++..++.++|+|.+++
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998777888887889999999999 6678899999999999996
Q ss_pred cCCCCC---------------------------------C---h--hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950 181 KGKPQP---------------------------------P---F--DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY 222 (458)
Q Consensus 181 ~~~~~~---------------------------------~---~--~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 222 (458)
...... . . ....++++.|..+++++++.+++.++|+|.+++.
T Consensus 559 ~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 559 RTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred hccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 432110 0 0 0124789999999999999999999999999999
Q ss_pred CChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHH
Q 043950 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWT 301 (458)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~ 301 (458)
...+..+.++..|+++.++.+|.+.+.+++..++|+|++++.... .+...+++.|++++|+++|+++ +.+++..|+.+
T Consensus 639 ~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~A 717 (2102)
T PLN03200 639 SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCA 717 (2102)
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHH
Confidence 888888889999999999999999999999999999999997544 4456678999999999999998 99999999999
Q ss_pred HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH--HHHHHHCCChHHHHhhccCCCHHH
Q 043950 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ--IKYLVREGCIKPLCDLLLCVDPKI 379 (458)
Q Consensus 302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~v 379 (458)
|.|++.+. +....+.+.|+++.|++++.+++++.|++|+++|.+++...+.+. ...+...|.+..|+++|+..|.+.
T Consensus 718 LanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 718 LANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred HHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence 99999865 566777788999999999999999999999999999998876544 366678999999999999988876
Q ss_pred HHH--HHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950 380 VTV--CLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 380 ~~~--~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 449 (458)
... ++++|..+.+..+...+ ..+++...++..++++.|.....+.+|.++++|..+|+++..+.
T Consensus 797 ~~~~~al~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 797 SATSEALEALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred hhHHHHHHHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 665 89999999986665543 35678999999999999988889999999999999999998764
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-32 Score=229.65 Aligned_cols=405 Identities=20% Similarity=0.211 Sum_probs=340.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+...++.-++++.++.+|..|..++.+++-. .++.-.++..+++..|+.-+..+. .++|..++.|+.|++.. .+++
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhcc-ccch
Confidence 3467777888999999999999999999876 455555667777777776666666 59999999999999994 8899
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..+...|++.++.++-++.+..++.++..+|.|++... +.|+.++..|+++.++..+ .+.++.++..++.+++++.-.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd 238 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVD 238 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhh
Confidence 99999999999999888999999999999999997655 4577888999999999999 899999999999999999877
Q ss_pred CCCCChhhh--hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHh
Q 043950 183 KPQPPFDQV--RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVG 260 (458)
Q Consensus 183 ~~~~~~~~~--~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~ 260 (458)
...+..... ..++|.++.++.++++.++..+..++++++.... +...++++|.+|.++++++++..........|+.
T Consensus 239 ~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIr 317 (550)
T KOG4224|consen 239 RRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIR 317 (550)
T ss_pred HHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHh
Confidence 544443333 4499999999999999999999999999996555 5566999999999999999988888888899999
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHH
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEA 340 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a 340 (458)
|++- ++-....+.+.|++.+|+.+|..+.+.+++-.|..+|.|++..+..+...+.+.|.+|.+..++-+....++.+.
T Consensus 318 nisi-hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISI-HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hccc-ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 9975 444556677999999999999998566799999999999999888889999999999999999999999999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh----
Q 043950 341 ALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE---- 416 (458)
Q Consensus 341 ~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---- 416 (458)
..++..++.. ......+.+.|.++.|+.+..+.+.+++-++..+|.++....+. |...++.
T Consensus 397 sac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P 461 (550)
T KOG4224|consen 397 SACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHP 461 (550)
T ss_pred HHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCc
Confidence 9999999884 35678889999999999999999999999999999999876554 3333322
Q ss_pred -cchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950 417 -DEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV 450 (458)
Q Consensus 417 -~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 450 (458)
.|.-..|..+..+..-.++..+.|.|..+.++-+
T Consensus 462 ~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 462 VQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 2334456666677777777778887777765543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-30 Score=217.88 Aligned_cols=366 Identities=19% Similarity=0.260 Sum_probs=316.1
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
..++++..|+.-+.++...+|..++.++.+++.. +.+...+...|++..+.++-++.+ ..+|..+..+|.++.. +.
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~ 198 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR 198 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence 3456677788777888899999999999999988 577788899999999999877777 7999999999999998 79
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC--CHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREE--ALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
++|+.++..|++|.|+.+++++++.++..|+.+++|++.+.. .|..+.+.+ .++.++.++ +++++.++-.+.-+|.
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR 276 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987753 467777777 899999999 8888999999999999
Q ss_pred HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHH
Q 043950 178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPAL 256 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~ 256 (458)
+++............+.+|.++++++++..........|+.|++-++- +...+.+.|++..|+++|... +++++-.|.
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHH
Confidence 999886555555568999999999999988888899999999996654 445588999999999999986 455999999
Q ss_pred HHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhh
Q 043950 257 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDI 336 (458)
Q Consensus 257 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~ 336 (458)
.+|.||+..+......++++|.++.+..++.+. ...++.+...+++.++... .....+.+.|+++.|+.++.+.+.++
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccchhh
Confidence 999999998888889999999999999999998 8889999999999998643 56678899999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHH------CCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 337 KKEAALAIANATVRGTHEQIKYLVR------EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 337 ~~~a~~~L~~l~~~~~~~~~~~l~~------~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
+.+|+.+|.|++.. .+....+.+ .|.-..|.+.+.+.+..++..+.|.+..++.....
T Consensus 434 ~gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 434 RGNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred cccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999874 344444444 35556778888888888888899999988876443
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=5.3e-26 Score=217.34 Aligned_cols=388 Identities=17% Similarity=0.178 Sum_probs=319.2
Q ss_pred hhhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950 17 NLQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 17 ~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 96 (458)
.-+.+-+.++.|++.|.+++.++...++.+|.+++.. .++...+.+.|+++.|.+++++++ .+++..++++|.|++.
T Consensus 284 ~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 284 LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF 360 (708)
T ss_pred HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc
Confidence 3566778999999999999999999999999999766 678999999999999999999998 8999999999999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950 97 GTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTL 176 (458)
Q Consensus 97 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l 176 (458)
+++.|..++..|++|.|+.++.++ ..+..++.+|.+++.++ ..+..+...++++.++..+..++++.+...+++.+
T Consensus 361 -d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~ 436 (708)
T PF05804_consen 361 -DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALL 436 (708)
T ss_pred -CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHH
Confidence 689999999999999999999754 45677999999998865 46788888899999999987777777888889999
Q ss_pred HHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-Cccchhh
Q 043950 177 SKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTP 254 (458)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~ 254 (458)
.|++.+..+.......++++.++.... ..|+ ..+..+.|++.+++.....+. +.+..|+.++..+ +++....
T Consensus 437 iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE 510 (708)
T PF05804_consen 437 INLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVE 510 (708)
T ss_pred HHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHH
Confidence 999998755554444677888776554 3443 245789999988754444343 4677888888774 6778889
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-
Q 043950 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA- 332 (458)
Q Consensus 255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~- 332 (458)
++++|+|+...+......+.+.+++|.+.+.|..+. ++++.-+++..++.++. .+.....+.+.|+++.|+.++...
T Consensus 511 ~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kq 589 (708)
T PF05804_consen 511 CLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQ 589 (708)
T ss_pred HHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhC
Confidence 999999998776667666668899999999997652 45788899999998885 457778888999999999999754
Q ss_pred -ChhhHHHHHHHHHHhhcCCCHHHHHHH-HHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHH
Q 043950 333 -EFDIKKEAALAIANATVRGTHEQIKYL-VREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQY 410 (458)
Q Consensus 333 -~~~~~~~a~~~L~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 410 (458)
|.++..+.++++..+..+. +.+..+ .+.++...|+++++++|+.+++.|-.+|.-+.+.++++... .+.-
T Consensus 590 eDdE~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r------i~~~ 661 (708)
T PF05804_consen 590 EDDEIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER------IRRE 661 (708)
T ss_pred chHHHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH------hhHH
Confidence 7899999999999999863 444555 45889999999999999999999999999999999988654 2223
Q ss_pred HHHHHhcchHHHHHhh
Q 043950 411 ARLVEEDEGFKKIEGL 426 (458)
Q Consensus 411 ~~~~~~~~~~~~l~~l 426 (458)
+....+..+++.+..-
T Consensus 662 kF~~hN~~WLe~v~~~ 677 (708)
T PF05804_consen 662 KFRWHNAQWLEMVESQ 677 (708)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4445577788888643
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.96 E-value=5.1e-25 Score=210.64 Aligned_cols=391 Identities=19% Similarity=0.167 Sum_probs=319.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 26 PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 26 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
+++-.+++.. ..+...+...|.|++.+ ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+
T Consensus 253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m 327 (708)
T PF05804_consen 253 KKLQTLIRKQ-EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM 327 (708)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence 3444444443 44555788899999876 677888999999999999999998 8999999999999999 68899999
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC
Q 043950 106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ 185 (458)
Q Consensus 106 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 185 (458)
.+.|+++.|.+++.+++..++..++++|.|++.+. ..|..+++.|.+|.++.++.+ +..+..++.+|+++|.....
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence 99999999999999999999999999999997765 558889999999999999943 34567789999999998766
Q ss_pred CChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950 186 PPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264 (458)
Q Consensus 186 ~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~ 264 (458)
.......+++|.++.++. .+++.+...++..+.|++... .+.+.+.+.++++.|++...+... ...+.++.|++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~ 479 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ 479 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence 666666889999988765 456777778889999998555 466778888899999988765433 234568889988
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHH
Q 043950 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAAL 342 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~ 342 (458)
+.+.....+. +.+..++..+..+.+.+...++..+|+|+...+....+.+-+.+++|.+.+.|..+ ++++..+++.
T Consensus 480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi 557 (708)
T PF05804_consen 480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI 557 (708)
T ss_pred cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence 7654434333 57888888888876889999999999999876545555555789999999999765 5679999999
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH
Q 043950 343 AIANATVRGTHEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF 420 (458)
Q Consensus 343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (458)
.++.++. ++..+..+.+.|.++.|++++.. +|++++.+.+.++++++...+.. ...+.+.++.
T Consensus 558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr-------------~~ll~~~~~~ 622 (708)
T PF05804_consen 558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR-------------EVLLKETEIP 622 (708)
T ss_pred HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH-------------HHHHhccchH
Confidence 9999986 66788888999999999999974 56789999999999999876643 4566778999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 421 KKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 421 ~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
..+.+++++.|++|++.|...++-.-
T Consensus 623 ~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 623 AYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988887776543
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=1.6e-20 Score=175.68 Aligned_cols=399 Identities=22% Similarity=0.248 Sum_probs=290.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--h
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM--N 101 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~--~ 101 (458)
.+|..+.+|.+.++.+|-.|+..+..++.++ ......+.+.|+|+.|+.++.+.+ ++++.+|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 4789999999999999999999999886654 666778889999999999999999 89999999999999997766 7
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc---------c----cHH
Q 043950 102 TNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH---------A----KLS 167 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~---------~----~~~ 167 (458)
+-.+.+.++++.+++++.. .+.++++.+..+|+||+..+ .++..++ ...+..|....... + +.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccce
Confidence 8888899999999999986 88999999999999998774 3333332 34566666555311 1 367
Q ss_pred HHHHHHHHHHHhhcCCCC--CChhhhhhhHHHHHHhhc------CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950 168 MLRIATWTLSKLCKGKPQ--PPFDQVRPALPALAQLIH------LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRR 239 (458)
Q Consensus 168 ~~~~a~~~l~~l~~~~~~--~~~~~~~~~l~~l~~ll~------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~ 239 (458)
+..++..+|.|++..... ..+....|++..|+..++ ..|....+.+...+.|++..-... +-+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E--------vp~~ 461 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE--------VPPK 461 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh--------cCHh
Confidence 889999999999986522 223334888998888887 356788899999999998432211 1111
Q ss_pred HHHHhCCCC--ccc--hhhHHHHHhHhhcC---------------ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950 240 LVELLGHPS--PSV--LTPALWTVGNIVMG---------------DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW 300 (458)
Q Consensus 240 L~~ll~~~~--~~~--~~~a~~~l~~l~~~---------------~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~ 300 (458)
....+...+ ... ......+++.-... .+.....++...++...+.++....++.+.+.++.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG 541 (717)
T KOG1048|consen 462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG 541 (717)
T ss_pred hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence 111111100 000 00222222222221 11112223344566776666765547889999999
Q ss_pred HHHHhhcCCHHH---H-HHH-HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 043950 301 TISNITAGNREQ---I-QAV-IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV 375 (458)
Q Consensus 301 ~l~nl~~~~~~~---~-~~l-~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 375 (458)
+|-|++.+.... + ..+ .+..+++.+++++..++..+...++.+|.|+..+. . .+.++..++++.|++.|...
T Consensus 542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--r-nk~ligk~a~~~lv~~Lp~~ 618 (717)
T KOG1048|consen 542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--R-NKELIGKYAIPDLVRCLPGS 618 (717)
T ss_pred hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--h-hhhhhhcchHHHHHHhCcCC
Confidence 999999753222 2 223 46789999999999999999999999999999853 3 34456689999999999743
Q ss_pred ------CHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHHHHHHHHHHhcCC
Q 043950 376 ------DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIREKAVKILETYWCG 448 (458)
Q Consensus 376 ------~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~ 448 (458)
++++...++..|.+++...... +..+.+.+++++|..+..+ .++++.+.|..++..+|..
T Consensus 619 ~~~~~~sedtv~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 619 GPSTSLSEDTVRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred CCCcCchHHHHHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3578888899999998654443 5666699999999999544 5679999999999999876
Q ss_pred CC
Q 043950 449 RV 450 (458)
Q Consensus 449 ~~ 450 (458)
.|
T Consensus 686 ~e 687 (717)
T KOG1048|consen 686 KE 687 (717)
T ss_pred HH
Confidence 54
No 12
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.2e-19 Score=166.51 Aligned_cols=390 Identities=20% Similarity=0.260 Sum_probs=309.9
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 24 ILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 24 ~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
-+..|++.|+.. |+..|+.|+.-|+.+++..+++...-+--.-++|.|+.+|+++.+.++...|+++|.+++.--|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 367788888865 9999999999999998876555555444556899999999998889999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 103 NVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
..+++.+.||.|+.-|.. ...++.++++.+|..|++.++. .+.+.|++...+.++ +--+...++.|+.+..|+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999986655 7899999999999999988765 477899999999999 66778899999999999999
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc---CChhhHHHHHHhCcHHHHHHHhCCCC----ccchhh
Q 043950 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY---GTNDKIQVVIEAGVCRRLVELLGHPS----PSVLTP 254 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~ 254 (458)
.-+...+..+...+|.|..+|...|....+.++.|+..++. +.++..+.+...|++.....++.-.. ..+.-.
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 98888888999999999999999999999999999999984 35566777888999999999987653 234455
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-------------hhhHHHHHHHHHH------------------
Q 043950 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-------------KKSIKKVACWTIS------------------ 303 (458)
Q Consensus 255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-------------~~~v~~~a~~~l~------------------ 303 (458)
.++.+..++++++.....+.+.++...+..+|.... .+.-..+....+.
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~ 483 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL 483 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence 677788888887877777777777777777664320 0000000000000
Q ss_pred ------------------------------Hhh--------------------------cCCHHHHHHHHHcCChHHHHH
Q 043950 304 ------------------------------NIT--------------------------AGNREQIQAVIDAGLIVPLVN 327 (458)
Q Consensus 304 ------------------------------nl~--------------------------~~~~~~~~~l~~~~~~~~L~~ 327 (458)
.+. ...++..+.+.+ .++|.|++
T Consensus 484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve 562 (1051)
T KOG0168|consen 484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE 562 (1051)
T ss_pred hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence 000 011122222222 47899999
Q ss_pred HhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCC
Q 043950 328 VLQDA-EFDIKKEAALAIANATVRGTHEQIKYLV-REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIG 405 (458)
Q Consensus 328 ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 405 (458)
++.+. ++.||..++.+|..++...+.+.+..++ +..+-..+-.++.+++..|...++.....+++..++.
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~-------- 634 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT-------- 634 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH--------
Confidence 98765 8999999999999999888877777665 4567778888999999999999999999999876654
Q ss_pred chhHHHHHHHhcchHHHHHhhhcCC
Q 043950 406 DVNQYARLVEEDEGFKKIEGLKSHD 430 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~~~l~~l~~~~ 430 (458)
|...|.+.|.+..+.+|....
T Consensus 635 ----F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 635 ----FSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred ----hhhhHhhhhHHHHHHHHhccC
Confidence 788899999999999997633
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.81 E-value=3e-16 Score=149.34 Aligned_cols=369 Identities=17% Similarity=0.169 Sum_probs=279.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh
Q 043950 69 PRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL 148 (458)
Q Consensus 69 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 148 (458)
+.++..+++.+ .+....++.+|..+... ...... ..+..+.|...|.++++.+|..+++.+.++..++......+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34778888877 67778888999988873 222222 346689999999999999999999999999988777677788
Q ss_pred hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhH
Q 043950 149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI 228 (458)
Q Consensus 149 ~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 228 (458)
+.+.++.++..+ .+++..+...|+.+|..++...+........+.++.+..++..++..++..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999 8889999999999999999876444333346668889999998888999999999999999999999
Q ss_pred HHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh-----HHHHHHHHHH
Q 043950 229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS-----IKKVACWTIS 303 (458)
Q Consensus 229 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----v~~~a~~~l~ 303 (458)
+.+.+.|+++.++..+++++.-++.+++.++..++. .+...+.+.+.|+++.+..++.+..... .-.......+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 989999999999999999888899999999999998 6777888999999999999997652222 1123346677
Q ss_pred HhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHH-HHC-----CChHHHHhhccCCCH
Q 043950 304 NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYL-VRE-----GCIKPLCDLLLCVDP 377 (458)
Q Consensus 304 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l-~~~-----~~l~~L~~ll~~~~~ 377 (458)
+++...+..+.... ..++..+.+++.+.|...+..|+.+++.++. +.+....+ ... .++..+.....+...
T Consensus 275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 77764444332222 2366677788888999999999999999986 45665555 332 245566666667788
Q ss_pred HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 378 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
+++.+++.++.+++...+..... .-......+...+.+......+..+.+.|-++++-.+..++...+.
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~-~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDN-DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 99999999999998766542110 0000111122222222222267788889999999999998887754
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.81 E-value=6.3e-16 Score=147.20 Aligned_cols=396 Identities=16% Similarity=0.148 Sum_probs=294.9
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950 27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI 106 (458)
Q Consensus 27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 106 (458)
.+..++++.+.+....++..|.++.... .. ..+ ..+..+.|...|.+++ +.+|..+++.+++++.++......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 3677788877777788888899887753 22 222 4567899999999999 89999999999999998777778888
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC
Q 043950 107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP 186 (458)
Q Consensus 107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 186 (458)
+.++++.++..+.+++..+...|+.+|.+++...+.. +.+...+.+..|...+ ...+..++..+..++.+++...+..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 8999999999999999999999999999999876655 4456767788888888 5556678888999999998876433
Q ss_pred Ch-hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccc-----h-hhHHHHH
Q 043950 187 PF-DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV-----L-TPALWTV 259 (458)
Q Consensus 187 ~~-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-----~-~~a~~~l 259 (458)
.. ....|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+.+- . -..+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 32 2336899999999999999999999999999998 5556788999999999999998743222 1 2234667
Q ss_pred hHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH-HHc-C----ChHHHHHHhccCC
Q 043950 260 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV-IDA-G----LIVPLVNVLQDAE 333 (458)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l-~~~-~----~~~~L~~ll~~~~ 333 (458)
++++...+....... ..++..+..++.+. |+..+..|..+++.+++. .+....+ .+. + ++........++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 777775444333222 24566677777788 999999999999999854 4555555 332 2 3444445556677
Q ss_pred hhhHHHHHHHHHHhhcCCCH---HH----HHHH---HHCCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCC
Q 043950 334 FDIKKEAALAIANATVRGTH---EQ----IKYL---VREGCIK-PLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGS 402 (458)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~---~~----~~~l---~~~~~l~-~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 402 (458)
.++|..++.++.++...... +. .+.. ...+-.. .+..+++.+=++++..++..+..++...-.
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg------ 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG------ 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH------
Confidence 89999999999999654432 11 1111 1234444 788888888899999999999999976432
Q ss_pred CCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 403 TIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
........|.++.+.+=....+.+.++.=-.++.++.
T Consensus 425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2556667777888877666667776655555555544
No 15
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.80 E-value=2.8e-17 Score=142.78 Aligned_cols=379 Identities=15% Similarity=0.102 Sum_probs=268.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCC--CCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 043950 34 SDDNSLQLEATTQFRILLSIE--RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAV 111 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i 111 (458)
..+..+...+..++...+..+ ++...+.-+.++++..|.+...+++ .++..++.++|+|++.++.+.|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 344556666777777775432 1112333456778888888888886 7999999999999999999999999999998
Q ss_pred HHHHHhhCC-------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHHhhcCC
Q 043950 112 PIFVKLLAS-------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-EHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 112 ~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
..++++|+. .+.+....+...|.|..-++...+..+.+.|+++.+...+. ...+...-+.......++.+-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 888888865 23467777888899999888899999999999999888874 2233333333333333332211
Q ss_pred C--CCChhhhhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchh------
Q 043950 184 P--QPPFDQVRPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLT------ 253 (458)
Q Consensus 184 ~--~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~------ 253 (458)
. -........+.-.+.+++.+ -.+++.+.++..+...++++.-. -.+.+.|.++.++.++.. +...-+.
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 0 01111223444445555553 35667777888888888665533 337788999999998876 3222222
Q ss_pred -hHHHHHhHhhcCChhhHHHHHhcC-ChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950 254 -PALWTVGNIVMGDDFQTQCIINHG-AVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD 331 (458)
Q Consensus 254 -~a~~~l~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~ 331 (458)
.++....-+..+ ++..+.+...+ +++.+..++.++ +....-.+..+++|+++.. ....++++.+++..|++.+..
T Consensus 291 k~~~el~vllltG-DeSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTG-DESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcC-chHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333 44445566555 899999999999 9999999999999999865 677889999999999999864
Q ss_pred -----CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCc
Q 043950 332 -----AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGD 406 (458)
Q Consensus 332 -----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~ 406 (458)
++.+++..++.+|.|++-- ......+...|+.+.+...++...|.|..+-+..++.+....+..
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~--------- 436 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI--------- 436 (604)
T ss_pred hcCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence 4778899999999999873 345567789999999999999999999999999998887655533
Q ss_pred hhHHHHHHHhcchHHHHHhhhcCCC
Q 043950 407 VNQYARLVEEDEGFKKIEGLKSHDN 431 (458)
Q Consensus 407 ~~~~~~~~~~~~~~~~l~~l~~~~~ 431 (458)
..+...+-..+++|..-..+++
T Consensus 437 ---a~eL~kn~~l~ekLv~Wsks~D 458 (604)
T KOG4500|consen 437 ---ACELAKNPELFEKLVDWSKSPD 458 (604)
T ss_pred ---HHHHhcCHHHHHHHHHhhhCCc
Confidence 2444445555666666655554
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.8e-16 Score=136.19 Aligned_cols=393 Identities=15% Similarity=0.134 Sum_probs=298.3
Q ss_pred hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950 18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~ 97 (458)
-++.-..+..||+.|..++.++.......|.++.-. .++...+.+.|++..|++++...+ ++++...++.+.|++.
T Consensus 299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF- 374 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF- 374 (791)
T ss_pred HHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-
Confidence 455556788999999999999999999999998666 678889999999999999999999 9999999999999999
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
+...+..++..|.+|.+..++.+... ...|+..+..++.++ ..+.++.....++.+++.+..+.+.++-...+....
T Consensus 375 D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci 451 (791)
T KOG1222|consen 375 DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI 451 (791)
T ss_pred cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH
Confidence 57889999999999999999976543 345777888887665 456777788889999988877777777777777778
Q ss_pred HhhcCCCCCChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhH
Q 043950 178 KLCKGKPQPPFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPA 255 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a 255 (458)
|+|.+..+.+.......+..++. .+++.|.- .+..+.|++++.......+++ .+..|...++.. +++....+
T Consensus 452 Nl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EC 525 (791)
T KOG1222|consen 452 NLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLEC 525 (791)
T ss_pred HHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHH
Confidence 99988766666555666666654 45555543 345678888776645555554 466677777664 55677788
Q ss_pred HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--
Q 043950 256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-- 332 (458)
Q Consensus 256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-- 332 (458)
+.+++|+.-..-.+...+.+.+++|.+-..|..+. ..++.-...-+++.++... .....+...++++.++++|+..
T Consensus 526 lGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~-~cA~Lla~a~~i~tlieLL~a~Qe 604 (791)
T KOG1222|consen 526 LGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL-DCARLLAPAKLIDTLIELLQACQE 604 (791)
T ss_pred HHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-HHHHHhCccccHHHHHHHHHhhcc
Confidence 99999998767777777778899999999997653 2355666667777776542 4455566789999999999764
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHH
Q 043950 333 EFDIKKEAALAIANATVRGTHEQIKYLV-REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYA 411 (458)
Q Consensus 333 ~~~~~~~a~~~L~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 411 (458)
|.+.....++++..+..+ ...+..++ +...-..+++++...+.++++.|-.+|..+....+++.+.+. .+.|
T Consensus 605 DDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~----~EkF- 677 (791)
T KOG1222|consen 605 DDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA----GEKF- 677 (791)
T ss_pred cchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh----hhhc-
Confidence 788899999999999875 23444444 556677899999999999999999999999998888765411 1111
Q ss_pred HHHHhcchHHHHHhhhcCCCh
Q 043950 412 RLVEEDEGFKKIEGLKSHDNN 432 (458)
Q Consensus 412 ~~~~~~~~~~~l~~l~~~~~~ 432 (458)
.-.++++++.++.-+.++++
T Consensus 678 -rwHNsQWLeMVEs~q~ddsE 697 (791)
T KOG1222|consen 678 -RWHNSQWLEMVESQQRDDSE 697 (791)
T ss_pred -ccchhHHHHHHHHhhccchh
Confidence 12356677777755544443
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.77 E-value=1e-16 Score=150.53 Aligned_cols=369 Identities=15% Similarity=0.137 Sum_probs=262.9
Q ss_pred hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC-ccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950 18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERS-PRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 96 (458)
..+.+|+|+.|+.++.+...++|..|+++|+|+..+... ++.-.+.+.++++.++++|....+.++++....+|.|+++
T Consensus 270 ~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS 349 (717)
T KOG1048|consen 270 RVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS 349 (717)
T ss_pred HHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc
Confidence 346789999999999999999999999999999776532 3677888999999999999985558999999999999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC----------C----CHHHHHHHHHHHHHhhcCCCchhhHHhhh-CCHHHHHHHhc
Q 043950 97 GTSMNTNVVIDHGAVPIFVKLLAS----------P----SDDVREQAVWALGNVAADSPGCRNLVLRE-EALIPLLAQLN 161 (458)
Q Consensus 97 ~~~~~~~~~~~~~~i~~L~~ll~~----------~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~l~~~l~ 161 (458)
++..+..++... +..|..-+-. + ...+..++..+|.|++....+.|+.+.+. |.++.|+..+.
T Consensus 350 -~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq 427 (717)
T KOG1048|consen 350 -NDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQ 427 (717)
T ss_pred -hhHHHHHHHHHH-HHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHH
Confidence 466666666543 6666554422 1 25677899999999998777777777654 67888888775
Q ss_pred -----ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-------------
Q 043950 162 -----EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG------------- 223 (458)
Q Consensus 162 -----~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~------------- 223 (458)
...|....+++..++.|++..............+...-.......+. ....|++.....
T Consensus 428 ~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~ 504 (717)
T KOG1048|consen 428 TAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPER 504 (717)
T ss_pred HHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCccc
Confidence 23456678999999999986532111000111111111111111111 223333333222
Q ss_pred --ChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhh----HHHH-HhcCChHHHHHHhccCChhhHH
Q 043950 224 --TNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQ----TQCI-INHGAVPCLLALLIHNHKKSIK 295 (458)
Q Consensus 224 --~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~----~~~~-~~~~~~~~l~~ll~~~~~~~v~ 295 (458)
.+.-.+.+....++..-..++.. .+....+.++.+|-|++.+.... +..+ .+..+++.++++|+.+ ++.|.
T Consensus 505 ~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv 583 (717)
T KOG1048|consen 505 ATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVV 583 (717)
T ss_pred ccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHH
Confidence 11111223334455554444543 46778899999999999876433 3333 4778999999999999 99999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC------ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 043950 296 KVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA------EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLC 369 (458)
Q Consensus 296 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~ 369 (458)
..++.+|.|++.+- ..+.++..++++.|++.|... +.++...++..|.+++.. +....+.+.+.++++.|+
T Consensus 584 ~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~ 660 (717)
T KOG1048|consen 584 RSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLR 660 (717)
T ss_pred HHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHH
Confidence 99999999999753 234555678999999999754 468889999999999864 678888999999999999
Q ss_pred hhccCC-CHHHHHHHHHHHHHHHHhch
Q 043950 370 DLLLCV-DPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 370 ~ll~~~-~~~v~~~~~~~l~~l~~~~~ 395 (458)
.+..+. ++++.+.+...+..+..+.+
T Consensus 661 ~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 661 LISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 998764 55788888888888876644
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.1e-15 Score=128.79 Aligned_cols=309 Identities=14% Similarity=0.150 Sum_probs=248.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-DYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVP 112 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 112 (458)
+++..+.+.++.+|..+... ...+.+..+...++++|... ++.++....+.++..-+...+.+|+.+++.++++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~-----qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHK-----QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred CCchhHHHHHHHHHHHhhcC-----CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 56788888888888887443 23466778889999998653 2367888888999988888899999999999999
Q ss_pred HHHHhhCC-CCHHHHHHHHHHHHHhhcCCC---------chhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 113 IFVKLLAS-PSDDVREQAVWALGNVAADSP---------GCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 113 ~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
.+.+.+.. +...+.+...|++.-+..+++ .....+...|++..|++.+.-.-+|.+....+.+|..++-.
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99987765 444677889999999886653 23445677788899999997777899999999999999877
Q ss_pred CCCCChhhhhhhHHHHHHhhcCC-ChH---HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHH
Q 043950 183 KPQPPFDQVRPALPALAQLIHLD-DEE---VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPAL 256 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~-~~~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~ 256 (458)
+.........|++..++.++.+. +.. ....+++.|..++ .+++....+++.|+.+.++.++.. +++.+...++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~ 351 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVM 351 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHH
Confidence 54444455589999999999873 333 4466788888888 445567779999999999998754 6788999999
Q ss_pred HHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChh
Q 043950 257 WTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFD 335 (458)
Q Consensus 257 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 335 (458)
.+++-++-..++....+++.|+-...++.++..+ ...++++|||.+.|++.++.++...++.. +++.|+......++.
T Consensus 352 a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~t 430 (461)
T KOG4199|consen 352 AIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHET 430 (461)
T ss_pred HHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999887543 45899999999999999887887777775 577888888888888
Q ss_pred hHHHHHHHHHHhhc
Q 043950 336 IKKEAALAIANATV 349 (458)
Q Consensus 336 ~~~~a~~~L~~l~~ 349 (458)
+...|-.+|..+-.
T Consensus 431 ce~~akaALRDLGc 444 (461)
T KOG4199|consen 431 CEAAAKAALRDLGC 444 (461)
T ss_pred HHHHHHHHHHhcCc
Confidence 88888888887743
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.74 E-value=4.7e-16 Score=152.80 Aligned_cols=333 Identities=18% Similarity=0.162 Sum_probs=255.4
Q ss_pred CChhhHhhccHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCCCcc--HHHHHHcCCHHHHHHhh-------cCC----
Q 043950 15 SLNLQTKLEILPAMVAGVWSD---DNSLQLEATTQFRILLSIERSPR--IEDVIQAGVVPRFVEFL-------MRE---- 78 (458)
Q Consensus 15 ~~~~~~~~~~i~~l~~~l~~~---~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~ll-------~~~---- 78 (458)
..-.++..|.+|.|++++..+ +.+.+..|-.+|.++.....++. ++++.-..+++.+...+ +..
T Consensus 227 sCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~ 306 (2195)
T KOG2122|consen 227 SCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAI 306 (2195)
T ss_pred hhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345788899999999999954 46788889999999987653222 22221112222222222 111
Q ss_pred --CCHHHHH-HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhcCCCch
Q 043950 79 --DYPQLQY-EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAADSPGC 143 (458)
Q Consensus 79 --~~~~i~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~------------~~~~~~~~a~~~L~~l~~~~~~~ 143 (458)
...+-+. .|+.+|..++. ++++|..+-+.|++.++-.|+.- ....+|..+..+|.||+.++...
T Consensus 307 apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~N 385 (2195)
T KOG2122|consen 307 APASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVAN 385 (2195)
T ss_pred CCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccc
Confidence 1123344 67778888887 69999999999999999988742 23579999999999999777554
Q ss_pred hh-HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh--hhhHHHHHH-hhcCCChHHHHHHHHHHHH
Q 043950 144 RN-LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV--RPALPALAQ-LIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 144 ~~-~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~~~l~~l~~-ll~~~~~~~~~~~~~~l~~ 219 (458)
+. .+-..|++..++..| .+...++......+|.||+..-....+... .|-+..|+. .++.........++.+|||
T Consensus 386 Ka~LCs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWN 464 (2195)
T KOG2122|consen 386 KATLCSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWN 464 (2195)
T ss_pred hhhhhhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhh
Confidence 44 445678899999999 555567888999999999988644444433 344444544 4556677889999999999
Q ss_pred hccCChhhHHHHHHh-CcHHHHHHHhCCC----CccchhhHHHHHhHhh---cCChhhHHHHHhcCChHHHHHHhccCCh
Q 043950 220 LSYGTNDKIQVVIEA-GVCRRLVELLGHP----SPSVLTPALWTVGNIV---MGDDFQTQCIINHGAVPCLLALLIHNHK 291 (458)
Q Consensus 220 l~~~~~~~~~~~~~~-~~i~~L~~ll~~~----~~~~~~~a~~~l~~l~---~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 291 (458)
++.+..++...+... |.+..|+.+|... .-.+.+.+-.+|.|++ ..++.+++.+.+++.+..|++.|++. .
T Consensus 465 LSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-S 543 (2195)
T KOG2122|consen 465 LSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-S 543 (2195)
T ss_pred hhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-c
Confidence 998877666656554 8899999999875 2357778878877765 35677888888999999999999999 9
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
..+..++|.+|+||...+++..+.+++.|.++.|..++.+.+..+..-++.+|.|++.+
T Consensus 544 LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 544 LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.73 E-value=5.6e-15 Score=128.70 Aligned_cols=404 Identities=11% Similarity=0.030 Sum_probs=282.7
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHc
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR------EDYPQLQYEAAWALTNIA 95 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~i~~~a~~~L~~l~ 95 (458)
.+.++.|.+..+|++.++..+..++|.|++..+ .+.+..+.+.|+-..+++.|+. +...+....+...|.|..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 567888888889999999999999999996665 8889999999997777777753 222356677788999999
Q ss_pred CCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950 96 SGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIA 172 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a 172 (458)
.++.+.+...++.|+++.|...+.- .+....+.....+.|+.+- .+...+...+......+++++.....+++.+.+
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~ 244 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI 244 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence 9999999999999999988887643 5566666666666665532 122234445566777788888777778888999
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC-CC-------hHHHHHHHHHHHHhccCChhhHHHHHHhC-cHHHHHHH
Q 043950 173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHL-DD-------EEVLSDACWTLSYLSYGTNDKIQVVIEAG-VCRRLVEL 243 (458)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~-~~-------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~-~i~~L~~l 243 (458)
...+...+.++...-.....|.+..+..+++. .+ ......++....-+..+++. .+.+...+ +++.+...
T Consensus 245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw 323 (604)
T KOG4500|consen 245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES-MQKLHADPQFLDFLESW 323 (604)
T ss_pred HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHH
Confidence 99999999886444444447777777777764 22 12223333334434444443 33344444 89999999
Q ss_pred hCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC----hhhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 043950 244 LGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH----KKSIKKVACWTISNITAGNREQIQAVIDA 319 (458)
Q Consensus 244 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 319 (458)
+.+++....-.+..+++|+++ .+..+.++++.+++..+++++.... +..++..++.++.|++-.. .+...++..
T Consensus 324 ~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~a 401 (604)
T KOG4500|consen 324 FRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPA 401 (604)
T ss_pred hcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-Cchhhcccc
Confidence 999999999999999999998 4556677888999999999996521 4577889999999998633 345678889
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHH-HHHHHHHHHHHHHHhchhhc
Q 043950 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPK-IVTVCLEGLENILKVGEAEK 398 (458)
Q Consensus 320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~-v~~~~~~~l~~l~~~~~~~~ 398 (458)
|+.+.+...++...+.+...-+..+.-+....+.-..+.......++.|++--+++|-. |.-.....+.-+++..-..
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k- 480 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK- 480 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh-
Confidence 99999999999999999888888777766533222222222334566666666666643 4444555555555432211
Q ss_pred ccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHH
Q 043950 399 NTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440 (458)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~ 440 (458)
...-.+-+.||++.......+++-..++.|..
T Consensus 481 ----------dv~~tvpksg~ik~~Vsm~t~~hi~mqnEalV 512 (604)
T KOG4500|consen 481 ----------DVILTVPKSGGIKEKVSMFTKNHINMQNEALV 512 (604)
T ss_pred ----------hhHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence 12444556777777776655555555554443
No 21
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.7e-14 Score=140.73 Aligned_cols=392 Identities=15% Similarity=0.158 Sum_probs=270.5
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 24 ILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 24 ~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
.-..++..+.+ ..+.++..-+..+..+++..-++.+. ++++.|++..++++ +..|+.|+.+|..+........
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WP-----ell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWP-----ELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchH-----HHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhcccc
Confidence 34556666665 45888888888888888875333222 46778888888999 8999999999999887332221
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-hCCHHHHHHHhc---ccccHHHHHHHHHHHHH
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-EEALIPLLAQLN---EHAKLSMLRIATWTLSK 178 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~ 178 (458)
...+ ..+.+.+.+.+.+++..+|..++++++.++...+.....+.. ...+|.++..+. +..+......++.++..
T Consensus 154 ~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 1111 123455556666666669999999999998655322222211 235666776664 34555666778888888
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhhHHH--------------------------
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLD--DEEVLSDACWTLSYLSYGTNDKIQV-------------------------- 230 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~-------------------------- 230 (458)
+....|..-......++........+. +..+|..++.++..+++..+...+.
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 887766555555566666666666644 4677777777777666542211000
Q ss_pred -------------------HHH------------hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCCh
Q 043950 231 -------------------VIE------------AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV 279 (458)
Q Consensus 231 -------------------~~~------------~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 279 (458)
.++ .-+++.+-.++.++++..|..++.+|+.++.++.+.....+ ..++
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il 391 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKIL 391 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHH
Confidence 000 01456666777888889999999999999999988777655 4689
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHH
Q 043950 280 PCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKY 358 (458)
Q Consensus 280 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 358 (458)
+.++..|+++ ++.||..|+.+++.++.+-...+++-...-+.+.|+..+.+. +++++..|+.++.|+...+.++....
T Consensus 392 ~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p 470 (1075)
T KOG2171|consen 392 PIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP 470 (1075)
T ss_pred HHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999999999 999999999999999987666677777777888899988765 77999999999999999877666554
Q ss_pred HHHCCChH-HHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHH
Q 043950 359 LVREGCIK-PLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIRE 436 (458)
Q Consensus 359 l~~~~~l~-~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~ 436 (458)
..+ ++++ .+..++++..+.+++.+..+|.......++. -.+|...+ +..|...+.. .+++.+.
T Consensus 471 YLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~---------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~ 535 (1075)
T KOG2171|consen 471 YLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK---------FIPYFDRL-----MPLLKNFLQNADDKDLRE 535 (1075)
T ss_pred HHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh---------hHhHHHHH-----HHHHHHHHhCCCchhhHH
Confidence 333 3455 4555667888899999999999998866653 33344444 5566655433 3344444
Q ss_pred HHH
Q 043950 437 KAV 439 (458)
Q Consensus 437 ~a~ 439 (458)
..-
T Consensus 536 Lrg 538 (1075)
T KOG2171|consen 536 LRG 538 (1075)
T ss_pred HHh
Confidence 333
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.1e-14 Score=126.91 Aligned_cols=381 Identities=18% Similarity=0.108 Sum_probs=286.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 043950 35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF 114 (458)
Q Consensus 35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 114 (458)
....+...|+..|.+++.. ......+...+++..|++.|+.++ .++.......|..++- ..+++..+.+.|++..|
T Consensus 275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL 350 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence 4466777788899999876 455667888899999999999999 7899999999999988 57889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhh
Q 043950 115 VKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA 194 (458)
Q Consensus 115 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 194 (458)
++++....++++..++..+.|++.+.. .+..++..|.+|.+..++.++.. ..-|...++.++.+...........+
T Consensus 351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdc 426 (791)
T KOG1222|consen 351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDC 426 (791)
T ss_pred HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHH
Confidence 999999999999999999999987764 46677888999999999954332 34567778888887665566666889
Q ss_pred HHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950 195 LPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI 273 (458)
Q Consensus 195 l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 273 (458)
++.++..+- ..+.++-...+..-.|++-+. .+.+.+.+..++..|++.--..... .-...+.|++.+.......+
T Consensus 427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~---lLmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 427 IKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDL---LLMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccch---HHHHHHHHhhhccchHHHHH
Confidence 998886554 445555555555555676333 3456566666777777654332222 23456677776555454555
Q ss_pred HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCC
Q 043950 274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRG 351 (458)
Q Consensus 274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~ 351 (458)
++ .+..+...+....+...-.++..+++|+....-+..+.+.+...+|.+-..|..+ ..+++...+.+++.++.
T Consensus 503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-- 578 (791)
T KOG1222|consen 503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-- 578 (791)
T ss_pred HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence 53 4667777777765677888999999999875555556666788999999988765 45678888888888876
Q ss_pred CHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC
Q 043950 352 THEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH 429 (458)
Q Consensus 352 ~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 429 (458)
+......+...++++.++++++. .+.+++...+.++..+++..... .-.+.+...-..+.+|+++
T Consensus 579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr-------------~~miket~~~AylIDLMHD 645 (791)
T KOG1222|consen 579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTR-------------RLMIKETALGAYLIDLMHD 645 (791)
T ss_pred hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH-------------HHHHhhccchHHHHHHHhc
Confidence 44566667788999999999974 56677777777888887763332 5566677777889999999
Q ss_pred CChHHHHHHHHHHHH
Q 043950 430 DNNGIREKAVKILET 444 (458)
Q Consensus 430 ~~~~v~~~a~~~l~~ 444 (458)
.|.++++-+...+.-
T Consensus 646 kN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 646 KNAEIRKVCDNALDI 660 (791)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999998877766543
No 23
>PRK09687 putative lyase; Provisional
Probab=99.70 E-value=8.1e-15 Score=128.08 Aligned_cols=256 Identities=14% Similarity=0.107 Sum_probs=203.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
--++.|.++|.+++ ..+|..|++.|..+... ..++.+..++.++++.+|..++++|+.+......
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 45788999999999 89999999999988652 4478888899999999999999999998543211
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
....++.|...+.+++++.++..++.+|.+++...... ....++.+...+.++++.++..+.++|+.+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 11246667777568889999999999999997543211 23456667788888999999999999987631
Q ss_pred hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
...++.|+.++.++++.++..|+.+|+.+...++ ..++.|+..+.+. +..||..|.++|+.+
T Consensus 158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR 219 (280)
T ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence 1257899999999999999999999999943333 3577799999888 999999999999986
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHH
Q 043950 306 TAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCL 384 (458)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~ 384 (458)
- ++ .+++.|++.+.+++ ++..++.+|+.+-. +. .++.|..+++ ++|+.++..+.
T Consensus 220 ~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 K--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred C--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 3 32 37899999999765 67889999999853 22 4778888886 78999999998
Q ss_pred HHHHH
Q 043950 385 EGLEN 389 (458)
Q Consensus 385 ~~l~~ 389 (458)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 88753
No 24
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=9.1e-14 Score=117.48 Aligned_cols=318 Identities=17% Similarity=0.171 Sum_probs=246.6
Q ss_pred HcCCHHHHHH---hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhc
Q 043950 64 QAGVVPRFVE---FLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAA 138 (458)
Q Consensus 64 ~~~~i~~L~~---ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~ 138 (458)
..|..+.++- +-.+++ ..+...++.+|..+....|+ +.+..++..++.+|.. .+.++.-..+..+..-|.
T Consensus 102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~ 176 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI 176 (461)
T ss_pred cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 4455554443 334455 67788888888888886665 4456778999998864 667888888888888888
Q ss_pred CCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC----------hhhhhhhHHHHHHhhcC-CCh
Q 043950 139 DSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP----------FDQVRPALPALAQLIHL-DDE 207 (458)
Q Consensus 139 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~----------~~~~~~~l~~l~~ll~~-~~~ 207 (458)
.++..|+.+++.++++-+...+...+...+.+..+|+++.+...+..+- .....+++..|.+.++. -||
T Consensus 177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence 8888999999999998888788665555789999999999987753211 11224567778888774 468
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC-ccc---hhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950 208 EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS-PSV---LTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 283 (458)
Q Consensus 208 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~---~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 283 (458)
.+....+.+|..++-.+ +..+.+.+.|++..+++++.+.+ ... .+.++..|..++. ++.....+++.|+.+.++
T Consensus 257 ~~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii 334 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII 334 (461)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence 99999999999998544 45667999999999999999843 333 3566777777764 777888899999999999
Q ss_pred HHhc-cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCCCHHHHHHHH
Q 043950 284 ALLI-HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRGTHEQIKYLV 360 (458)
Q Consensus 284 ~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~ 360 (458)
.++. +..+|.|-.+++.+++-++..+|++-...++.|+-...++.++.. ...+++++++++.|++..+ .+++..++
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l 413 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILL 413 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHH
Confidence 8774 333789999999999999998889999999999999999988764 4678999999999999864 46666666
Q ss_pred HCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950 361 REGCIKPLCDLLLCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 361 ~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l 390 (458)
.. +++.|+..-...++.....+-.+|.-+
T Consensus 414 ~~-GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 414 AN-GIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hc-cHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 65 488899988888887777776676654
No 25
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.68 E-value=1.4e-13 Score=126.49 Aligned_cols=406 Identities=15% Similarity=0.075 Sum_probs=275.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY-PQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
.++..+.+.+++....|..-..+++.+. .++...+++.|.++.|+.+++..+. .+.+...+.++.....+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3455566778888888889999988876 5556678999999999999987652 4667677778888888788888899
Q ss_pred HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCchhh--HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 106 IDHGAVPIFVKLLASPS-DDVREQAVWALGNVAADSPGCRN--LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 106 ~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
.+.+.++.|.+++.+++ ..+++.++.++.++...++.... .......+..+...+ ..+.....+.-+....++|..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence 99999999999999888 88999999999999876643211 112222333333333 223333444445555566655
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH---HhccCChhhHH----HHHHhCcHH--HHHHHhCCCCccchh
Q 043950 183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLS---YLSYGTNDKIQ----VVIEAGVCR--RLVELLGHPSPSVLT 253 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~---~l~~~~~~~~~----~~~~~~~i~--~L~~ll~~~~~~~~~ 253 (458)
..........++.+.+.-++.......+..++.+++ ++..+++.... ...+.|+.+ .+.+++++++.+.+-
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 433333344777778887887778889999999999 77666554332 233445555 566677777766666
Q ss_pred hHHHHHhHhhcCChh---------------------------------------------------hHHHHHhcCChHHH
Q 043950 254 PALWTVGNIVMGDDF---------------------------------------------------QTQCIINHGAVPCL 282 (458)
Q Consensus 254 ~a~~~l~~l~~~~~~---------------------------------------------------~~~~~~~~~~~~~l 282 (458)
.++.++.++...+.. ......+....+..
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 666666665543200 00000001111111
Q ss_pred HHHh----------------------------------------------------ccCChhhHHHHHHHHHHHhhcCCH
Q 043950 283 LALL----------------------------------------------------IHNHKKSIKKVACWTISNITAGNR 310 (458)
Q Consensus 283 ~~ll----------------------------------------------------~~~~~~~v~~~a~~~l~nl~~~~~ 310 (458)
.+++ ... |..++..|+.++-++++.-.
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence 1111 111 33444555555555543211
Q ss_pred HHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHH
Q 043950 311 EQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 311 ~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l 390 (458)
.....+-...+..+|+.++..++..++..++.+++|++...+ .....++..|+++.+..++..+++.++..++|+|+++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 222223345689999999999999999999999999987544 4457778999999999999999999999999999999
Q ss_pred HHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 391 LKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
+-...+.. ...+-.-=+...|..+.++++..|++.+.+++.++..+
T Consensus 489 ~f~~de~~------------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 489 MFNCDEEE------------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcchHHH------------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 86554432 22222222367888899999999999999999998776
No 26
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=2.2e-14 Score=125.35 Aligned_cols=254 Identities=14% Similarity=0.124 Sum_probs=200.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.++.|.+.|.+++..++..|+++|..+-. ..+++.+..++++++ +.+|..|+++|+.+..... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~-~-- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAKR-C-- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcc-c--
Confidence 58889999999999999999999988722 135778888888888 8999999999999876321 1
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 104 VVIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 104 ~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
....++.|..+ ++++++.||..++.+|++++...... ....+..+...+ .++++.++..+.++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 11346788876 67789999999999999996443221 111344555555 67789999999999976532
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950 183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l 262 (458)
...++.|+.++.++++.++..++.+|+.+...++ ..++.|+..+.+.++.++..|.+.|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 4588999999999999999999999999842222 3567899999999999999999999886
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhhHHHHH
Q 043950 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDIKKEAA 341 (458)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~ 341 (458)
-. ...++.|++.|.++ + ++..++.+|+++. +++ .+|.|..++. .+|..++..+.
T Consensus 220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig--~~~---------a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELG--DKT---------LLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcC--CHh---------HHHHHHHHHhhCCChhHHHHHH
Confidence 32 25789999999877 4 7788999999985 332 7899999997 77999999999
Q ss_pred HHHHH
Q 043950 342 LAIAN 346 (458)
Q Consensus 342 ~~L~~ 346 (458)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 88753
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.67 E-value=8.8e-14 Score=127.73 Aligned_cols=375 Identities=13% Similarity=0.079 Sum_probs=253.6
Q ss_pred hhHhhccHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 043950 18 LQTKLEILPAMVAGVWSDD--NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIA 95 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~ 95 (458)
-..+.|+++.+..++..++ +..+...+..+..+.+++ ......+.+.+.++.|++++.+++...++...++++..+.
T Consensus 46 ~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~If 124 (678)
T KOG1293|consen 46 TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIF 124 (678)
T ss_pred hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHH
Confidence 4677899999999988665 556656666777777776 7788899999999999999999885588999999999998
Q ss_pred CCChhhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 96 SGTSMNTNVVI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 96 ~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
..++..-..+. ...+++.+..++.-+.......-+....+++.. +..+....+.|+.+.+--.+ ...+...+..+.
T Consensus 125 et~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL 202 (678)
T KOG1293|consen 125 ETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAAL 202 (678)
T ss_pred hcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHH
Confidence 85543333322 223455555555424344444444444555443 34455566666666555444 555677888888
Q ss_pred HHHH---HhhcCCCCCChhhh-----hhhHH--HHHHhhcCCChHHHHHHHHHHHHhccCChh-----------------
Q 043950 174 WTLS---KLCKGKPQPPFDQV-----RPALP--ALAQLIHLDDEEVLSDACWTLSYLSYGTND----------------- 226 (458)
Q Consensus 174 ~~l~---~l~~~~~~~~~~~~-----~~~l~--~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~----------------- 226 (458)
.+++ ++..+++....... .++.+ .+.+++++++...+..++.++.++...+..
T Consensus 203 ~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~ 282 (678)
T KOG1293|consen 203 LCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSL 282 (678)
T ss_pred HHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHH
Confidence 8888 66666543333222 34444 345566666666666666666655533310
Q ss_pred ----------------------------------hHHHHHHhCcHHHHHHHhC---------------------------
Q 043950 227 ----------------------------------KIQVVIEAGVCRRLVELLG--------------------------- 245 (458)
Q Consensus 227 ----------------------------------~~~~~~~~~~i~~L~~ll~--------------------------- 245 (458)
......+....+.+.+++.
T Consensus 283 i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~ 362 (678)
T KOG1293|consen 283 IVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLE 362 (678)
T ss_pred HHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhh
Confidence 0000011111222222211
Q ss_pred -------------------------CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950 246 -------------------------HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW 300 (458)
Q Consensus 246 -------------------------~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~ 300 (458)
..+...+.+|+.++.++++.-......+-...+..++++++..+ +..++..+..
T Consensus 363 ~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lg 441 (678)
T KOG1293|consen 363 YGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLG 441 (678)
T ss_pred hhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHH
Confidence 01123444555555555443222222233567899999999888 8999999999
Q ss_pred HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH
Q 043950 301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV 380 (458)
Q Consensus 301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 380 (458)
+|+|++.........++..|++..+..++.+.++.++..+.|+|.++..+++......+...-....+..+.+++++.|+
T Consensus 442 ai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vq 521 (678)
T KOG1293|consen 442 AICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQ 521 (678)
T ss_pred HHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHH
Confidence 99999986667778899999999999999999999999999999999998877776666666667788888899999999
Q ss_pred HHHHHHHHHHHHhchh
Q 043950 381 TVCLEGLENILKVGEA 396 (458)
Q Consensus 381 ~~~~~~l~~l~~~~~~ 396 (458)
+.|+.+++|+....++
T Consensus 522 eq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 522 EQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHHHHHHHHhhcCcHH
Confidence 9999999999876443
No 28
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.3e-13 Score=130.44 Aligned_cols=396 Identities=17% Similarity=0.155 Sum_probs=271.0
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 24 ILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 24 ~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
.++.|...+. +.|+++|..|+..+++++..- -.....=.+..+-..|+..+.++..+.+|..-+.++..++...-..
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 5777777777 578999999999999997752 2222222344566677777777665899999999999998842221
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
. =.++++.|.+..+++++..|+.|+.+|+++...-+.. +..+.+ ..+.+.+.+ .+++..++..+..++..++.
T Consensus 115 -~--WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 -K--WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred -c--hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHHHHHH
Confidence 0 0245778888888999999999999999997543321 111111 222233333 44444499999999988876
Q ss_pred CCC--CCChhhhhhhHHHHHH----hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--Cccchh
Q 043950 182 GKP--QPPFDQVRPALPALAQ----LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPSVLT 253 (458)
Q Consensus 182 ~~~--~~~~~~~~~~l~~l~~----ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~ 253 (458)
..+ ..........+|.++. .+..+|.+....++.++..++...+......... ++....++.++. ++.+|.
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~-ii~~~l~Ia~n~~l~~~~R~ 267 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ-IIQFSLEIAKNKELENSIRH 267 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHhhcccccHHHHH
Confidence 653 2222333556665554 4456677778888888888887766555544432 455555555543 456677
Q ss_pred hHHHHHhHhhcCChhhHH---------------------------------------------HHH-----h---c----
Q 043950 254 PALWTVGNIVMGDDFQTQ---------------------------------------------CII-----N---H---- 276 (458)
Q Consensus 254 ~a~~~l~~l~~~~~~~~~---------------------------------------------~~~-----~---~---- 276 (458)
.|+.+|..++...+...+ ..+ . .
T Consensus 268 ~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p 347 (1075)
T KOG2171|consen 268 LALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLP 347 (1075)
T ss_pred HHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehH
Confidence 776666665533111100 000 0 1
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH
Q 043950 277 GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI 356 (458)
Q Consensus 277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 356 (458)
-+++.+-.++.++ ++.-|..+..+|+.++.|+.+.+...++ .+++..+..+.++++.||..|+.+++.++..-.++..
T Consensus 348 ~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq 425 (1075)
T KOG2171|consen 348 PLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ 425 (1075)
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH
Confidence 1345555677788 9999999999999999999888877665 4899999999999999999999999999987655544
Q ss_pred HHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHH-HHHhhhcCCChHH
Q 043950 357 KYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFK-KIEGLKSHDNNGI 434 (458)
Q Consensus 357 ~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~v 434 (458)
++ ....+++.|+..+++ .++.|...+..++-+++....+.. ..+|...+ ++ .+..|..++.+.+
T Consensus 426 k~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~--------l~pYLd~l-----m~~~l~~L~~~~~~~v 491 (1075)
T KOG2171|consen 426 KK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI--------LEPYLDGL-----MEKKLLLLLQSSKPYV 491 (1075)
T ss_pred HH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH--------HHHHHHHH-----HHHHHHHHhcCCchhH
Confidence 44 556678888888876 466999999999999998766642 44556555 44 6667778888888
Q ss_pred HHHHHHHHHH
Q 043950 435 REKAVKILET 444 (458)
Q Consensus 435 ~~~a~~~l~~ 444 (458)
++.+...|..
T Consensus 492 ~e~vvtaIas 501 (1075)
T KOG2171|consen 492 QEQAVTAIAS 501 (1075)
T ss_pred HHHHHHHHHH
Confidence 8877766643
No 29
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.2e-14 Score=130.32 Aligned_cols=355 Identities=17% Similarity=0.176 Sum_probs=227.2
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHH-HH---HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIED-VI---QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~---~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~ 97 (458)
.+.+|.|.++|.+++...+..|..+|.+++.+. .+..+. .. -.-.+|.++++.++++ +.+|..|+.|+..+.-.
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFIII 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheeec
Confidence 456899999999999999999999999997653 221111 11 1236899999999998 99999999999988774
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTL 176 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l 176 (458)
.++....-++ ..+..+..+-.+.++++|.+.+.++..+....+. ..+-. .+++++++... ++.++.+.-.||...
T Consensus 205 ~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~t-qd~dE~VALEACEFw 280 (885)
T KOG2023|consen 205 QTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRT-QDVDENVALEACEFW 280 (885)
T ss_pred CcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHc-cCcchhHHHHHHHHH
Confidence 4443332222 3467777788889999999999999999876554 11111 24556666665 677888999999999
Q ss_pred HHhhcCCCCCChhhhh----hhHHHHHHhhcCCC----------------------------------------------
Q 043950 177 SKLCKGKPQPPFDQVR----PALPALAQLIHLDD---------------------------------------------- 206 (458)
Q Consensus 177 ~~l~~~~~~~~~~~~~----~~l~~l~~ll~~~~---------------------------------------------- 206 (458)
..++..+ ....... .++|.++.-+.-++
T Consensus 281 la~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 281 LALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHhcCc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 9999875 4444444 44444443222100
Q ss_pred ----------hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhc
Q 043950 207 ----------EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 276 (458)
Q Consensus 207 ----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 276 (458)
+.+|.....++.-++..-. +.+.. -++|.|-+.|.++++.+|+.+..++|.++.++-...-.-. .
T Consensus 359 e~DDdD~~~dWNLRkCSAAaLDVLanvf~---~elL~-~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-p 433 (885)
T KOG2023|consen 359 EDDDDDAFSDWNLRKCSAAALDVLANVFG---DELLP-ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-P 433 (885)
T ss_pred ccccccccccccHhhccHHHHHHHHHhhH---HHHHH-HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-H
Confidence 2233333333332221111 11111 2456666667778999999999999999875532211111 1
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhhcC--CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHH
Q 043950 277 GAVPCLLALLIHNHKKSIKKVACWTISNITAG--NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHE 354 (458)
Q Consensus 277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (458)
.++|.++.+|.+. .+-||..+||+|+..+.. ..+ .+.... .++..|++.+-+.+.+|++.|+.++..+-+....+
T Consensus 434 eLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 434 ELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred HHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence 3789999999998 999999999999998751 111 112222 14445566666779999999999999998766555
Q ss_pred HHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 043950 355 QIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 355 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~ 394 (458)
...++.. .+..|...+..-..+-.....++++.+++..
T Consensus 511 LVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 511 LVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred hHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 5554322 3444444443211111123345555555543
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=1.6e-13 Score=117.00 Aligned_cols=239 Identities=17% Similarity=0.184 Sum_probs=184.5
Q ss_pred hhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh
Q 043950 191 VRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 269 (458)
Q Consensus 191 ~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~ 269 (458)
..+-++.++.+|+ +.|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+ .
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-N 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-h
Confidence 3667788999998 568999999999999987544 466778889999999999999999999999999999987443 3
Q ss_pred HHHHHhcCChHHHHHHhcc-CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950 270 TQCIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT 348 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 348 (458)
...+ +. .++.+.+...+ +.+..++..+..+|.|++..+ ++ +.++. +.++.++.++..++..+|..++.+|.|++
T Consensus 88 ~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DY-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-ch-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3333 22 45555554433 346789999999999998643 22 33332 37999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhchhhcccCC-CCCchhHHHHHHHhcc-hHHHHHh
Q 043950 349 VRGTHEQIKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKVGEAEKNTGS-TIGDVNQYARLVEEDE-GFKKIEG 425 (458)
Q Consensus 349 ~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~l~~ 425 (458)
. ++.....++..+++..++.+++.. +.++...++..+.+|-.........-. .-.....+...|.+.+ .-++|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 8 667888899999999999999875 668888999999999665444321110 0012334457777776 7889999
Q ss_pred hhcCCChHHHHHH
Q 043950 426 LKSHDNNGIREKA 438 (458)
Q Consensus 426 l~~~~~~~v~~~a 438 (458)
|.+|++++|+.+.
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999999763
No 31
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.62 E-value=2.4e-14 Score=141.14 Aligned_cols=270 Identities=20% Similarity=0.187 Sum_probs=225.2
Q ss_pred HHHHH-HHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC--------C---CHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 37 NSLQL-EATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE--------D---YPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 37 ~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~---~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
..-++ .|+..|.++ +++ ++.++.+-+.|++..+-+|+.-. + ...+|..|..+|.||..++..++..
T Consensus 311 ~~H~lcaA~~~lMK~-SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~ 388 (2195)
T KOG2122|consen 311 DEHQLCAALCTLMKL-SFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKAT 388 (2195)
T ss_pred cchhhHHHHHHHHHh-hcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhh
Confidence 34555 667777777 444 78899999999999988887421 1 2368999999999999988888877
Q ss_pred HHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC-CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 105 VID-HGAVPIFVKLLASPSDDVREQAVWALGNVAAD-SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 105 ~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
+.. .|++..++..|.+...++.+....+|.||+-. +...+..+.+.|-+..|.........+..++..+.+|+||+.+
T Consensus 389 LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 389 LCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred hhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 774 59999999999999999999999999999943 4456777888899999998887777777889999999999988
Q ss_pred C--CCCChhhhhhhHHHHHHhhcC----CChHHHHHHHHHHHHhcc---CChhhHHHHHHhCcHHHHHHHhCCCCccchh
Q 043950 183 K--PQPPFDQVRPALPALAQLIHL----DDEEVLSDACWTLSYLSY---GTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253 (458)
Q Consensus 183 ~--~~~~~~~~~~~l~~l~~ll~~----~~~~~~~~~~~~l~~l~~---~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 253 (458)
. +...+-.+.|++..|+.+|.- +.-.+++.+-.+|.|++. ......+.+.++..+..|+..|++.+-.+..
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVS 548 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVS 548 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEee
Confidence 7 333445569999999999974 346778888888888773 3455667788899999999999999999999
Q ss_pred hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN 309 (458)
Q Consensus 254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 309 (458)
++|.+|+||+..++...+.+++.|.++.+..++.+. +..+..-++.+|.|+....
T Consensus 549 NaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 549 NACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred cchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999 8889999999999998643
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.62 E-value=5e-13 Score=136.68 Aligned_cols=275 Identities=20% Similarity=0.187 Sum_probs=219.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
..++.|++.|.++++.+|..|+..|..+.. .+.++.|.+.|.+++ +.+|..|+..|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence 357899999999999999999999988732 246899999998888 8999999999988854211
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..+.|...|.++++.+|..++.+|..+... ....++..+ .++++.++..++.+|..+-.
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 136788888999999999999999887422 123456666 78899999999999997621
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950 183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l 262 (458)
.+.+..++.++++.++..+..+|+.+..... ..++.|..+++++++.+|..|+..|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1346778999999999999999998864322 2367888999999999999999999888
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL 342 (458)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~ 342 (458)
.... ...+.+...|.++ ++.||..|+++|+.+... ..++.|+.+|.+++..||..|++
T Consensus 803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence 5321 1335688889888 999999999999987421 25689999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHH
Q 043950 343 AIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE 388 (458)
Q Consensus 343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~ 388 (458)
+|+.+- .++.. .+.|...+++++..|+..+..+|.
T Consensus 861 aL~~~~--~~~~a---------~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 861 ALTRWP--GDPAA---------RDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccC--CCHHH---------HHHHHHHHhCCCHHHHHHHHHHHh
Confidence 999972 23332 556778889999999999998875
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.61 E-value=1.5e-13 Score=117.21 Aligned_cols=195 Identities=20% Similarity=0.223 Sum_probs=162.5
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 043950 63 IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142 (458)
Q Consensus 63 ~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 142 (458)
++.+-++.|+.+|+..++|.+++.++.++++.+. .+..++.+.+.|+++.+..++.++++.+++.|++++.|++.+.+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4556789999999987779999999999999988 689999999999999999999999999999999999999877655
Q ss_pred hhhHHhhhCCHHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 143 CRNLVLREEALIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 143 ~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
. ..+.. .++.+++..... -+..++..++.+|.+++.... ........+|.++.++.+++..++..++++|.|++
T Consensus 88 ~-~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~--~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 Q-EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND--YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred H-HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc--hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3 33322 466666665433 467889999999999986632 23445678999999999999999999999999999
Q ss_pred cCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhc
Q 043950 222 YGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVM 264 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~ 264 (458)
.++. ....++..++...++.++..+ +.++...++..+.|+..
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 6655 566688889999999999885 67788899999999964
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=2.1e-12 Score=132.13 Aligned_cols=276 Identities=16% Similarity=0.149 Sum_probs=217.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
..++.|+..|.+++ +.+|..|+..|+.+.. .+.++.|...|.++++.+|..|+.+|..+....+
T Consensus 621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 621 PSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred hhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 46789999999999 9999999999998764 2458999999999999999999999988843221
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
..+.+...+ .++++.++..++.+|..+.... ...+...+.++|+.++..++.+|+.+-.
T Consensus 685 ------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--- 743 (897)
T PRK13800 685 ------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--- 743 (897)
T ss_pred ------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence 124566677 6788999999999988864221 2356778999999999999999987621
Q ss_pred hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 226 DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 226 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
.+.|...+.++++.+|..++.+|+.+..... ..++.|..++.++ ++.||..|+.+|+.+
T Consensus 744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAEL 802 (897)
T ss_pred -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence 1346678999999999999999998864321 2377888999988 999999999999998
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHH
Q 043950 306 TAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385 (458)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~ 385 (458)
.... ..++.+...+.++++.+|..|+.+|+.+-. ...++.|..+++++++.|+..+..
T Consensus 803 g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRASAWQVRQGAARALAGAAA------------DVAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhccc------------cchHHHHHHHhcCCCHHHHHHHHH
Confidence 5321 134568888999999999999999998742 123688999999999999999999
Q ss_pred HHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHH
Q 043950 386 GLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444 (458)
Q Consensus 386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 444 (458)
+|..+ ...+ .....|...+++++++|+..|.+.|+.
T Consensus 861 aL~~~-~~~~----------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRW-PGDP----------------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhcc-CCCH----------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99885 1111 124566778889999999999998863
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.56 E-value=2.6e-12 Score=125.80 Aligned_cols=330 Identities=19% Similarity=0.190 Sum_probs=236.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
.+++.+++++.+++...+..+--++..+...+ ++ .-.+ +++.+.+=+.+++ +.++..|+++++++.. ++..
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~-~~~l----~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~ 112 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED-PE-LLIL----IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMA 112 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HH-HHHH----HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hh-HHHH----HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchh
Confidence 35778888989999999999988888886653 22 1212 5777888888988 8999999999999985 5555
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..+ ++.+.+++.++++.+|..|+.++.++....|+. +... .++.+...+ .++++.++..|+.++..+ ..
T Consensus 113 ~~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 113 EPL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp HHH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HC
T ss_pred hHH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-cc
Confidence 544 688999999999999999999999998766553 2222 467777777 888899999999999999 22
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950 183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l 262 (458)
.+..........++.+..++...++-.+..++.++..++......... ..+++.+..++.+.++.+...++.++..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKL 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 211111445667777777778899999999999999988665544321 45778888888888888888898888877
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL 342 (458)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~ 342 (458)
....+ .-..+++.+..++.++ ++.+|..++..+..++...+.... .....+..+..+++..++..++.
T Consensus 259 ~~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~ 326 (526)
T PF01602_consen 259 SPSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALD 326 (526)
T ss_dssp SSSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHH
T ss_pred hcchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHH
Confidence 65333 1235688899999977 888999999999999875533222 11222333334778889999999
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhc-cCCCHHHHHHHHHHHHHHHHhch
Q 043950 343 AIANATVRGTHEQIKYLVREGCIKPLCDLL-LCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
.+..++. +..... +++.|...+ +..+++++..++..+..++...+
T Consensus 327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 9998875 233333 356666666 34466777777777777665544
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.56 E-value=1.1e-12 Score=128.52 Aligned_cols=359 Identities=16% Similarity=0.174 Sum_probs=250.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.+..+.+-++++++.++-.|++++.++.. .+..+ .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---~~~~~-----~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT---PEMAE-----PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S---HHHHH-----HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc---cchhh-----HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 56778888999999999999999999853 22222 25788899999999 89999999999999886555432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhh
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~ 180 (458)
. . .++.+.+++.+.++.++..|+.++..+ ...+.... ..++.++..+. ...++-.+..++.++..++
T Consensus 151 ~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 D---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp G---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred H---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 1 2 589999999999999999999999998 22221100 23444444443 6778888888888888877
Q ss_pred cCCCCCChhhh--hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 181 KGKPQPPFDQV--RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 181 ~~~~~~~~~~~--~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
... .... ..+++.+..++++.++.+...++.++..+..... .-..+++.+.+++.++++.++..++..
T Consensus 221 ~~~----~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 221 PME----PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp SSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cCC----hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence 543 2222 5788889999999999999999999998875433 223478999999998888899999999
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhc-cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhh
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLI-HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDI 336 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~ 336 (458)
+..++...+.. +. .....+..+. ++ +..+|..++..+..++. +.+... +++.|...+. ..+.++
T Consensus 291 L~~l~~~~~~~---v~---~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 291 LSQLAQSNPPA---VF---NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHCCHCHHH---HG---THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred HHHhhcccchh---hh---hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence 99998766222 21 2333344555 55 88999999999999974 445444 5667888884 447889
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh
Q 043950 337 KKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE 416 (458)
Q Consensus 337 ~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (458)
+..++..++.++......... .++.+++++...++.+...+...+.+++...++.+ ...
T Consensus 357 ~~~~i~~I~~la~~~~~~~~~------~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~--- 415 (526)
T PF01602_consen 357 RRELIKAIGDLAEKFPPDAEW------YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI--- 415 (526)
T ss_dssp HHHHHHHHHHHHHHHGSSHHH------HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH---
T ss_pred hhhHHHHHHHHHhccCchHHH------HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH---
Confidence 999999999987643211111 36667777776666666666777777765544321 111
Q ss_pred cchHHHHHhh-hcCCChHHHHHHHHHHHHhcCCC
Q 043950 417 DEGFKKIEGL-KSHDNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 417 ~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~ 449 (458)
++.+.++ .+-.++++...+.|++..|-+..
T Consensus 416 ---l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~ 446 (526)
T PF01602_consen 416 ---LKKLIELLEDISSPEALAAAIWILGEYGELI 446 (526)
T ss_dssp ---HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHH
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHhhhcccCCcc
Confidence 3333333 33466777777788777775433
No 37
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=5.6e-13 Score=122.35 Aligned_cols=314 Identities=15% Similarity=0.126 Sum_probs=220.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH----GAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 141 (458)
.++|.|+.+|.+++ ....+-|..+|.+++.++++..+.-... -.+|.++++.+++++.+|..|+.++..+....+
T Consensus 128 elLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 46899999999998 5889999999999999877765542221 357999999999999999999999988775543
Q ss_pred chhhHHhh-hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950 142 GCRNLVLR-EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 142 ~~~~~~~~-~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 220 (458)
.. .... ...+..+..+. ++.+++++++.|.++..|....+.....-..++++.+....++.|.++...|+.....+
T Consensus 207 qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 207 QA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred HH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 31 1111 12344444444 78899999999999999998877777777789999999999999999999999999999
Q ss_pred ccCChhhHHHHHH--hCcHHHHHHHhCCCC--------------------------------------------------
Q 043950 221 SYGTNDKIQVVIE--AGVCRRLVELLGHPS-------------------------------------------------- 248 (458)
Q Consensus 221 ~~~~~~~~~~~~~--~~~i~~L~~ll~~~~-------------------------------------------------- 248 (458)
++.+. ....+.. ..++|.|+.-+...+
T Consensus 284 aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DD 362 (885)
T KOG2023|consen 284 AEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDD 362 (885)
T ss_pred hcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccc
Confidence 86652 2221211 145555554332110
Q ss_pred ------ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH-HHHHHcCC
Q 043950 249 ------PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI-QAVIDAGL 321 (458)
Q Consensus 249 ------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~~ 321 (458)
+.+|+.++.+|..++..-.+. +. .-++|.+-+.|.++ +..+|+.+..+++.++.|.-..+ .++- .+
T Consensus 363 dD~~~dWNLRkCSAAaLDVLanvf~~e---lL-~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eL 435 (885)
T KOG2023|consen 363 DDAFSDWNLRKCSAAALDVLANVFGDE---LL-PILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLP--EL 435 (885)
T ss_pred ccccccccHhhccHHHHHHHHHhhHHH---HH-HHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchH--HH
Confidence 235555555554444322211 11 12466667777777 99999999999999997643322 2222 37
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH-HHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI-KYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 322 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
+|.|+.+|.+..+-||.-++|.|+.....-..+.. +++.. ++..|.+.+-+.+..|+++++.++..+-+.
T Consensus 436 ip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p--vL~~ll~~llD~NK~VQEAAcsAfAtleE~ 506 (885)
T KOG2023|consen 436 IPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP--VLEGLLRRLLDSNKKVQEAACSAFATLEEE 506 (885)
T ss_pred HHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999988653211111 22222 455566666678889999999888766543
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.51 E-value=7e-11 Score=107.56 Aligned_cols=321 Identities=14% Similarity=0.184 Sum_probs=228.3
Q ss_pred CChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhh-----CCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 109 GAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLRE-----EALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 109 ~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..+..++.++.. ..+++.+.++..+..+..+.|.....+.+. ....+++.++ ..+|..+...++.+++.+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 456777777765 668888999999999888877655555543 4567788877 567888999999999999876
Q ss_pred CCCCCh-hhhhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--CccchhhHHHH
Q 043950 183 KPQPPF-DQVRPALPALAQLIHLD-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPSVLTPALWT 258 (458)
Q Consensus 183 ~~~~~~-~~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~ 258 (458)
.+.... ......++.+...+++. +...+..++.++..+...+..+ ..+.+.++++.|+.+|+.. +..+...++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 533222 12233445566666654 4677777889999998776654 5577788999999999863 44678889999
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC------HHHHHHHHHcCChHHHHHHhccC
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN------REQIQAVIDAGLIVPLVNVLQDA 332 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~------~~~~~~l~~~~~~~~L~~ll~~~ 332 (458)
++-++...+ ........++++.++++++.....++-+-+..++.|+...+ ......+++.|+.+ ++..|...
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~r 288 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQR 288 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcC
Confidence 998886444 55556678999999999998878899999999999998732 22344566777665 44545432
Q ss_pred ---ChhhHHHHHHHH-------HHhhcCC------------------C----HHHHHHHHHCC--ChHHHHhhcc-CCCH
Q 043950 333 ---EFDIKKEAALAI-------ANATVRG------------------T----HEQIKYLVREG--CIKPLCDLLL-CVDP 377 (458)
Q Consensus 333 ---~~~~~~~a~~~L-------~~l~~~~------------------~----~~~~~~l~~~~--~l~~L~~ll~-~~~~ 377 (458)
|+++....-..- ..++... + .++...+.+.+ +++.|..+++ +.|+
T Consensus 289 k~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 289 KYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 555543221111 1111100 1 12344444443 4678888885 5677
Q ss_pred HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 378 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
.+...|+.=++.+++..+.. +..+.+.|+.+.+..|++|+|++|+..|...++.+.
T Consensus 369 ~~laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 369 IILAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred ceeehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78888888899999887654 677889999999999999999999999999988763
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.51 E-value=3.3e-10 Score=111.21 Aligned_cols=259 Identities=14% Similarity=0.086 Sum_probs=179.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
++.+++++.++|..++......+.+.+... ++.. + -.++.|.+=+.+++ +.+|..|+++++++-. ++....
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~ 140 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY 140 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence 555566666677777777766666664432 2211 1 14777888888888 8999999999988766 343333
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC
Q 043950 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP 184 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 184 (458)
+ ++.+.+.+.+.++.||..|+.++.++...+|+ .+.+.+.++.+.+++ .+.++.+..+|+.+|..+....+
T Consensus 141 l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 141 T-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred H-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence 3 57788888899999999999999999776654 334556778888877 78899999999999999987654
Q ss_pred CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950 185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264 (458)
Q Consensus 185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~ 264 (458)
. ........+..+...+..-++-.+..++.++......+... ...++..+...|++.++.|...|+.++.++..
T Consensus 212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e-----~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES-----AETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 3 23445666777777777777778888888886643222211 12577888899999999999999999998875
Q ss_pred CC-hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH
Q 043950 265 GD-DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR 310 (458)
Q Consensus 265 ~~-~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 310 (458)
.. +....... ..+-+.++.++ ++ +++++..+...+.-++...+
T Consensus 286 ~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 286 RCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred cCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCH
Confidence 43 22222221 12335556554 44 66788777777766665443
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.51 E-value=6.3e-13 Score=102.33 Aligned_cols=119 Identities=36% Similarity=0.572 Sum_probs=109.8
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q 043950 61 DVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS 140 (458)
Q Consensus 61 ~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 140 (458)
.+++.|+++.+++++.+++ ..++..++++|.+++..+++....+++.|+++.++.++.++++.++..++++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999998 899999999999999988999999999999999999999999999999999999999988
Q ss_pred CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 141 PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 141 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
+..+..+.+.|.++.++..+ ...+..+++.++|++.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77778888889999999999 66688999999999999874
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.51 E-value=5.8e-13 Score=102.55 Aligned_cols=118 Identities=32% Similarity=0.537 Sum_probs=110.5
Q ss_pred HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH
Q 043950 231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR 310 (458)
Q Consensus 231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 310 (458)
+++.|+++.+++++.++++.++..+++++++++...++....+.+.++++.+++++.++ ++.++..++|+++|++.+.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56789999999999999999999999999999998888888889999999999999998 99999999999999999887
Q ss_pred HHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 311 EQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 311 ~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
.....+.+.|+++.+++.+...+.+++..++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999863
No 42
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.1e-11 Score=114.05 Aligned_cols=342 Identities=15% Similarity=0.165 Sum_probs=252.1
Q ss_pred cHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 24 ILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 24 ~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
.+|.|+.+|+.+ +.++...|+++|..++.-- +.....+++.++||.|++-|..-...++.++++.+|..++.. ..
T Consensus 212 lvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~ 287 (1051)
T KOG0168|consen 212 LVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HP 287 (1051)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---cc
Confidence 478999999964 6999999999999997665 566778889999999998887766689999999999999984 34
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
..+.+.|++.+.+.++.--+..+++.|+.+.+|.|..- ++--..+++ .+|.|..++ ...|....+.++-++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHHH
Confidence 56778899999999998888999999999999999533 222234444 788888888 66667788889999998887
Q ss_pred CC-CCCCh---hhhhhhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc----
Q 043950 182 GK-PQPPF---DQVRPALPALAQLIHLDD----EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP---- 249 (458)
Q Consensus 182 ~~-~~~~~---~~~~~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---- 249 (458)
.. +...+ ....+++..+.+++.-.+ ..+....++.+..++...+.....+...++...+..+|.....
T Consensus 365 ~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 365 GFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCccc
Confidence 65 22211 222788888888887543 3455667788888888877777777888888888887754211
Q ss_pred ----cc-h------hhHHH-----------------------------------------------HHhHhhc-------
Q 043950 250 ----SV-L------TPALW-----------------------------------------------TVGNIVM------- 264 (458)
Q Consensus 250 ----~~-~------~~a~~-----------------------------------------------~l~~l~~------- 264 (458)
.+ + +.... +...+..
T Consensus 445 s~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~ 524 (1051)
T KOG0168|consen 445 SLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTG 524 (1051)
T ss_pred ccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcc
Confidence 00 0 00000 0001110
Q ss_pred -------------------CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHH-cCChH
Q 043950 265 -------------------GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVID-AGLIV 323 (458)
Q Consensus 265 -------------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~-~~~~~ 323 (458)
..++..+.++ ..++|.|+++..+..++.||..+..+|..+.. .+.+.+..++. ..+-.
T Consensus 525 t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS 603 (1051)
T KOG0168|consen 525 TSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSS 603 (1051)
T ss_pred cchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHH
Confidence 0111122222 24788899999888899999999999999986 67788887775 44556
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950 324 PLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 324 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 373 (458)
.+-.+|.+.|..+..-|+...--++..-..-+...+.++|++..+-.+..
T Consensus 604 ~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 604 HLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 67778899999998888888888887766677788889998888877776
No 43
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.42 E-value=1.1e-10 Score=106.37 Aligned_cols=282 Identities=16% Similarity=0.144 Sum_probs=203.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+....++.+|+++|.-++..|+..|..+++.. ..........-..+.|...+++++....+..++.++..+.. .+++|
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R 178 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYR 178 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHH
Confidence 44677788899999999999999999998764 22222111112445666677665435788889999999998 68899
Q ss_pred HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 103 NVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
..+.+.++++.|..+|+. .+.+++..++.+++-++.+.+ ........+.++.++..+..+..+.+.+.++.++.|+.
T Consensus 179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 999888899999999976 356889999999999987765 34555667899999999988888899999999999999
Q ss_pred cCCCCC------ChhhhhhhHHHHHHhhcC---CChHHHHHHHHHH-------HHhccCCh-------------------
Q 043950 181 KGKPQP------PFDQVRPALPALAQLIHL---DDEEVLSDACWTL-------SYLSYGTN------------------- 225 (458)
Q Consensus 181 ~~~~~~------~~~~~~~~l~~l~~ll~~---~~~~~~~~~~~~l-------~~l~~~~~------------------- 225 (458)
...... ...++...++.++..|.. .|+++.+..-..- ..++..+.
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se 337 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE 337 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence 854111 112233344555555542 3555543322111 11111000
Q ss_pred ----hhHHHHHHh--CcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHH
Q 043950 226 ----DKIQVVIEA--GVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA 298 (458)
Q Consensus 226 ----~~~~~~~~~--~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a 298 (458)
++...+.+. .++..|+++|. +.++.+..-||.=++.+++..|.....+-+.|+=..+++++.++ +++||.+|
T Consensus 338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eA 416 (429)
T cd00256 338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEA 416 (429)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHH
Confidence 011122222 36888999995 45777888899999999999988888777899999999999999 99999999
Q ss_pred HHHHHHhhcC
Q 043950 299 CWTISNITAG 308 (458)
Q Consensus 299 ~~~l~nl~~~ 308 (458)
..++.-+..+
T Consensus 417 L~avQklm~~ 426 (429)
T cd00256 417 LLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 44
>PTZ00429 beta-adaptin; Provisional
Probab=99.40 E-value=4.3e-09 Score=103.48 Aligned_cols=294 Identities=15% Similarity=0.067 Sum_probs=202.8
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
|-+..+-+.|.+.+...+..+++.+....... .+.. .+.+..++++.+++ .+++.-.-..+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 34566777888888888888887666554433 2322 25677788888888 8999999889999988655543
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
-. .++.+.+=+.++++.+|..|+++++++... ...+ -.+.++.+.+ .+.++.+++.|+.++.++...
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e-----~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLE-----YTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHH-----HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 267888888899999999999999998432 1111 1345566666 788999999999999999876
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950 183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l 262 (458)
.+. .....+.++.+..++.+.|+.++..++.++..+....+.... ...+.+..++..+..-++..+...+.+|...
T Consensus 171 ~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Ccc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 543 223356788899999999999999999999999865543332 2345667777777766666666666666443
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHH
Q 043950 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAA 341 (458)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~ 341 (458)
.+...... ..++..+...|++. ++.|.-+|+.++.++... +++....... .+-+.++.++ +.+++++--++
T Consensus 247 ---~P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaL 318 (746)
T PTZ00429 247 ---RPSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVC 318 (746)
T ss_pred ---CCCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHH
Confidence 22221211 25688888889998 899999999999988753 2333332222 1334555553 44667777777
Q ss_pred HHHHHhhc
Q 043950 342 LAIANATV 349 (458)
Q Consensus 342 ~~L~~l~~ 349 (458)
..+.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 66655554
No 45
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.2e-10 Score=106.30 Aligned_cols=367 Identities=16% Similarity=0.168 Sum_probs=239.7
Q ss_pred cHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 24 ILPAMVAGVWS--DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 24 ~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
.+..++....+ ++..+|+.|+.+|.+-+...+.....+.-..-+....++.-++++ .+++..|..||..+..-..+.
T Consensus 173 iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~ 251 (859)
T KOG1241|consen 173 ILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEF 251 (859)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 35555666553 468899999999998765542222223333334556666767777 899999999999998866666
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc----------------hhhHH--hhhCCHHHHHHHhcc-
Q 043950 102 TNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG----------------CRNLV--LREEALIPLLAQLNE- 162 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~--~~~~~l~~l~~~l~~- 162 (458)
....+....+..-+.-++++++++.-+++...+++|...-+ ..... .-.+++|.|++.|.+
T Consensus 252 m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq 331 (859)
T KOG1241|consen 252 MEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQ 331 (859)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhC
Confidence 66666667778888888899999999999999999853211 00000 012467778888753
Q ss_pred cc-----cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcH
Q 043950 163 HA-----KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVC 237 (458)
Q Consensus 163 ~~-----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i 237 (458)
++ +-..-..|..||.-++.... ...+..++|.+-+-++++|+.-++.+..+++.+..+.....-.-+..+.+
T Consensus 332 de~~d~DdWnp~kAAg~CL~l~A~~~~---D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qal 408 (859)
T KOG1241|consen 332 DEDDDDDDWNPAKAAGVCLMLFAQCVG---DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQAL 408 (859)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHhc---ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhh
Confidence 11 22344555555555544321 22345788888889999999999999999999997766544444556789
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHH-HHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQC-IINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV 316 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 316 (458)
+.++.++.++.-.++..+.|+++.++...++.+.. ......++.++.-|.+ .|.+...+||++.+++.+.++....-
T Consensus 409 p~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s~ 486 (859)
T KOG1241|consen 409 PSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVSN 486 (859)
T ss_pred HHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999888889999999999999877654332 2234567777777764 57899999999999995322211110
Q ss_pred -----HH---cCChHHHHHHhcc---CChhhHHHHHHHHHHhhcCCCHHHHHHHHHC--CChHHHHhhc-----cCCC--
Q 043950 317 -----ID---AGLIVPLVNVLQD---AEFDIKKEAALAIANATVRGTHEQIKYLVRE--GCIKPLCDLL-----LCVD-- 376 (458)
Q Consensus 317 -----~~---~~~~~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--~~l~~L~~ll-----~~~~-- 376 (458)
.. ..++..|+..... .+...|..|..+|+.++..+..+....+.+. -.+..|-..+ ...+
T Consensus 487 ~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~ 566 (859)
T KOG1241|consen 487 GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRA 566 (859)
T ss_pred CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 00 0123333333332 3578999999999999998766554443221 1122222222 2222
Q ss_pred --HHHHHHHHHHHHHHHHhchh
Q 043950 377 --PKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 377 --~~v~~~~~~~l~~l~~~~~~ 396 (458)
.+++...+..|..+.+....
T Consensus 567 q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 567 QLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 24555566666666665444
No 46
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.36 E-value=4.4e-10 Score=104.99 Aligned_cols=393 Identities=13% Similarity=0.129 Sum_probs=248.4
Q ss_pred hHhhcc---HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHH
Q 043950 19 QTKLEI---LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY-PQLQYEAAWALTNI 94 (458)
Q Consensus 19 ~~~~~~---i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~i~~~a~~~L~~l 94 (458)
..+.|. +..++.-++++.+..+..++....++...-+.....+-.+.-.+..++..++.++. ..+-.....++.+-
T Consensus 709 a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~ 788 (1172)
T KOG0213|consen 709 AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA 788 (1172)
T ss_pred HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 344443 66667778888888888888888877665433333334444556666666665542 12222233333322
Q ss_pred cCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh--HHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950 95 ASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN--LVLREEALIPLLAQLNEHAKLSMLRIA 172 (458)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a 172 (458)
... |-.-.-..++..++..|++.++.+|++|+..++.++.--..+.+ .+...|. .|.+.+ ....+++.-..
T Consensus 789 lg~----r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsI 861 (1172)
T KOG0213|consen 789 LGG----RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSI 861 (1172)
T ss_pred Hhh----ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHH
Confidence 221 10111113456677788999999999999999999743222211 2222232 244555 67789999988
Q ss_pred HHHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccc
Q 043950 173 TWTLSKLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSV 251 (458)
Q Consensus 173 ~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~ 251 (458)
+.++..++... -.....-..+++|.|...|++....++++.+..++.++...++....-.-..+.--|+.+|+..+.++
T Consensus 862 LgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~i 941 (1172)
T KOG0213|consen 862 LGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEI 941 (1172)
T ss_pred HHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777653 22334445899999999999999999999999999999777664432222345556778888888899
Q ss_pred hhhHHHHHhHhhcCC--hhhHHHHHh-----------------------c---CChHHHHHHhccCChhhHHHHHHHHHH
Q 043950 252 LTPALWTVGNIVMGD--DFQTQCIIN-----------------------H---GAVPCLLALLIHNHKKSIKKVACWTIS 303 (458)
Q Consensus 252 ~~~a~~~l~~l~~~~--~~~~~~~~~-----------------------~---~~~~~l~~ll~~~~~~~v~~~a~~~l~ 303 (458)
|++|..+++.++..- .+....+++ . .++|.|+.=...+ +..|+.-...+++
T Consensus 942 RRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkals 1020 (1172)
T KOG0213|consen 942 RRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALS 1020 (1172)
T ss_pred HHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHH
Confidence 999999998887531 111111111 1 2455555555556 7778888888888
Q ss_pred HhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh-------ccCC
Q 043950 304 NITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL-------LLCV 375 (458)
Q Consensus 304 nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l-------l~~~ 375 (458)
.+..- .....+++. .+.|.|.+.|.+.|.--|..|..++.+++.+.. -.|..+.++.+ +-.+
T Consensus 1021 f~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~ 1090 (1172)
T KOG0213|consen 1021 FMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILET 1090 (1172)
T ss_pred HHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCC
Confidence 77641 112222222 378888999999999999999999999988632 12223333333 3356
Q ss_pred CHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950 376 DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 376 ~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 449 (458)
.|.++.....++..+-.. +.-.-.++.+.+=+-|+...|++..-.+++.++.+.
T Consensus 1091 sPhviqa~~e~~eg~r~~--------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1091 SPHVIQAFDEAMEGLRVA--------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred ChHHHHHHHHHHHHHHHH--------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence 777777766666555332 212222455566678888889888877777765543
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=4.2e-10 Score=105.53 Aligned_cols=358 Identities=16% Similarity=0.158 Sum_probs=238.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
+|-+-+.++++|..-+..|+.++..+..+. .+....-.-.+++|.++.++.++. -.++..++|+++.++...++....
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~n 443 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAIIN 443 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhccc
Confidence 444445777999999999999999998876 344434444578999999999877 688999999999999977754432
Q ss_pred H-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-----hhHHhhhCCHHHHHHHhc------ccccHHHHHHH
Q 043950 105 V-IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC-----RNLVLREEALIPLLAQLN------EHAKLSMLRIA 172 (458)
Q Consensus 105 ~-~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~l~~l~~~l~------~~~~~~~~~~a 172 (458)
- ...+.++.++.-|. ..|.+..+++|++.+|+...++. ...... ...+.++..|. +..+..++..+
T Consensus 444 ~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 444 QELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred HhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence 2 22344556666554 55889999999999998422111 000111 23444554443 22445688899
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHH---------hhcCCC----hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950 173 TWTLSKLCKGKPQPPFDQVRPALPALAQ---------LIHLDD----EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRR 239 (458)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~---------ll~~~~----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~ 239 (458)
..+|..+....+........+....+.. .+...| .+++...+.+|..+............+ .++..
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~l 600 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGL 600 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHH
Confidence 9999999988765555555555444443 222222 355666666776666433333333333 47788
Q ss_pred HHHHhCC-CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043950 240 LVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID 318 (458)
Q Consensus 240 L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 318 (458)
+++++.+ .+.-+.+.|+.+++.++..-......-. ..+.|.|..-|++..+..|...|...++.++..-...+....+
T Consensus 601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym-~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d 679 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM-PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCD 679 (859)
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 8888888 4556778899988888764433332222 3578888888866558899999999999999755455555554
Q ss_pred cCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-------CC--------CHHHHH
Q 043950 319 AGLIVPLVNVLQDA--EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-------CV--------DPKIVT 381 (458)
Q Consensus 319 ~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-------~~--------~~~v~~ 381 (458)
+++..|+..|+++ +..++-..+.+++.++..-..++..++ +.++.+++ .+ -.++++
T Consensus 680 -~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl------~~vm~llq~as~~~~d~~~~~~~dYvd~LRe 752 (859)
T KOG1241|consen 680 -ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL------EMVMPLLQQASSVQTDPADDSMVDYVDELRE 752 (859)
T ss_pred -HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHhccCCCCcccHHHHHHHHHH
Confidence 5888999999887 678999999999999886666666663 22333332 11 135788
Q ss_pred HHHHHHHHHHHhch
Q 043950 382 VCLEGLENILKVGE 395 (458)
Q Consensus 382 ~~~~~l~~l~~~~~ 395 (458)
.++.+...++....
T Consensus 753 ~~leay~gi~qglk 766 (859)
T KOG1241|consen 753 GILEAYTGIIQGLK 766 (859)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888877776544
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9.6e-09 Score=96.96 Aligned_cols=329 Identities=17% Similarity=0.183 Sum_probs=244.1
Q ss_pred hhHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHc
Q 043950 18 LQTKLEILPAMVAGVWSD-DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-DYPQLQYEAAWALTNIA 95 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~ 95 (458)
.....++|+.|+..+.+. -.+-|+.|++.|..++. .-+..+...+++.|++.|+.. .++++...++.++.++.
T Consensus 17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr-----kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR-----KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH-----HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 455567899999988854 58889999999998843 234455566789999999764 34899999999999988
Q ss_pred CCCh------hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-chhhHHhh-hCCHHHH
Q 043950 96 SGTS------MN----------TNVVI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-GCRNLVLR-EEALIPL 156 (458)
Q Consensus 96 ~~~~------~~----------~~~~~-~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~-~~~l~~l 156 (458)
.+.+ +. .+.++ ..+.|..++..+...+-.||..++..+.++....| +.++.+.. .-++..+
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 7442 11 12233 45789999999999999999999999999987664 45555543 3568889
Q ss_pred HHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh-hhhHHHHHHhhcCC---C-hHHHHHHHHHHHHhccCChhhHHHH
Q 043950 157 LAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV-RPALPALAQLIHLD---D-EEVLSDACWTLSYLSYGTNDKIQVV 231 (458)
Q Consensus 157 ~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~ll~~~---~-~~~~~~~~~~l~~l~~~~~~~~~~~ 231 (458)
+..+ .+..+.++..++..|..++...+..++... ..++..|..++..+ | .-+.+.++..+.|+..++..+.+.+
T Consensus 172 mdlL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 172 MDLL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHHH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 9999 566667899999999999998876665544 88899999999743 3 4678899999999999888889999
Q ss_pred HHhCcHHHHHHHhCCC---C-----ccc-----hhhHHHHHhHhhcCC------hhhHHHHHhcCChHHHHHHhccC-Ch
Q 043950 232 IEAGVCRRLVELLGHP---S-----PSV-----LTPALWTVGNIVMGD------DFQTQCIINHGAVPCLLALLIHN-HK 291 (458)
Q Consensus 232 ~~~~~i~~L~~ll~~~---~-----~~~-----~~~a~~~l~~l~~~~------~~~~~~~~~~~~~~~l~~ll~~~-~~ 291 (458)
.+.+.++.|.++|... + |.- ...++.++..+..-. ......+...+++..|..++-++ -.
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence 9999999999988652 2 111 123455555554321 22234566889999999999877 35
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcC----------ChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCC
Q 043950 292 KSIKKVACWTISNITAGNREQIQAVIDAG----------LIVPLVNVLQD-AEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~----------~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~ 352 (458)
.+++.++..+++++.+++..+...+.+.. ++-.++.+..+ ..+..|..+.+++..+.....
T Consensus 331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcch
Confidence 58999999999999998877777776421 22223333333 367899999999998887544
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.24 E-value=6.2e-08 Score=85.47 Aligned_cols=320 Identities=13% Similarity=0.158 Sum_probs=214.4
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHh------hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 111 VPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVL------REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 111 i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
+..++.++.. ..++..+.++..+..+-..+......+. ..-.-...+.++ ...+.-+.....++++.++...
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHhc
Confidence 5566666655 4455666666666665544433222211 112355677777 6667777777889999888765
Q ss_pred CCCChh-hhhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHH
Q 043950 184 PQPPFD-QVRPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTV 259 (458)
Q Consensus 184 ~~~~~~-~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l 259 (458)
+..... ...-....+...+++ .++..+..+.+||..+...+..+.. ++...++..++..+.+ .+-.++...+.++
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYA-FVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhhe-eeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 332222 223334445556665 6677888888999999877775555 5666777888888843 4567888899999
Q ss_pred hHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH------HHHHHHHHcCChHHHHHHhccC-
Q 043950 260 GNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR------EQIQAVIDAGLIVPLVNVLQDA- 332 (458)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~------~~~~~l~~~~~~~~L~~ll~~~- 332 (458)
+-|+. ++...+.+...+.++.+.++++.....+|-+-.+.++.|++...+ +....++..++.+.+-.+-...
T Consensus 225 WlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 98876 555557677789999999999988678999999999999997542 3445566666666555444332
Q ss_pred -ChhhHHHHHHHHHH-------hhcCC--------------C--------HHHHHHHHHC--CChHHHHhhccCC-CHHH
Q 043950 333 -EFDIKKEAALAIAN-------ATVRG--------------T--------HEQIKYLVRE--GCIKPLCDLLLCV-DPKI 379 (458)
Q Consensus 333 -~~~~~~~a~~~L~~-------l~~~~--------------~--------~~~~~~l~~~--~~l~~L~~ll~~~-~~~v 379 (458)
|+++....-..-.. ++... + .+++..+-++ .+++.|+.+|+.. ||.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 55544322211111 11110 0 1233344333 2578888988865 4777
Q ss_pred HHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 380 VTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 380 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
...|+.=++.+.+..+.. ...+...||.+.+.+|++|+|++|+..|...++++.
T Consensus 384 L~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred eehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 778888888888887764 778889999999999999999999999988888764
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.24 E-value=1.7e-09 Score=95.14 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=201.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
.+..+.+|..++.-+...+.+.+..+++.. ......-...-....|-..++++...+-...|++||..+.. -++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence 567888999999999888999999998765 22211100001123344455553436778889999999998 5889999
Q ss_pred HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 105 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
++..+++..++..+.+ .+-.++.+.+.+++-++.+.... +.+...+.++.+...+..+..+.+.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9988889999998833 56789999999999997766554 56677788999999998888889999999999999988
Q ss_pred CCCCCh------hhhhhhHHHHHHhhcC---CChHHHHHHHHHHHH-------hccCChh--------------------
Q 043950 183 KPQPPF------DQVRPALPALAQLIHL---DDEEVLSDACWTLSY-------LSYGTND-------------------- 226 (458)
Q Consensus 183 ~~~~~~------~~~~~~l~~l~~ll~~---~~~~~~~~~~~~l~~-------l~~~~~~-------------------- 226 (458)
.+.... .+...-++..++.|.. .|+++....-..-.. +++.+..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 643322 2234444555555542 355444333222111 1111110
Q ss_pred ---hHHHHHH--hCcHHHHHHHhCCCC-ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950 227 ---KIQVVIE--AGVCRRLVELLGHPS-PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW 300 (458)
Q Consensus 227 ---~~~~~~~--~~~i~~L~~ll~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~ 300 (458)
+...+-+ ..++..|+++|+.++ +.+..-||.=++...+..|+....+.+.|+=+.+++++.++ |++||.+|..
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 1111111 247899999999864 77888899999999999999988888999999999999999 9999999999
Q ss_pred HHHHhhcC
Q 043950 301 TISNITAG 308 (458)
Q Consensus 301 ~l~nl~~~ 308 (458)
++.-+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 98877654
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.7e-08 Score=91.47 Aligned_cols=326 Identities=15% Similarity=0.165 Sum_probs=238.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCC--
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSP-- 141 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~-- 141 (458)
..|+.|+.-+.+....+-|..|++.|..++. .+|..+...| ++.|++.|+. .++++...++.++.++....+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 4689999988888778899999999999987 6777777666 8999999986 678999999999999986542
Q ss_pred ----chh----------h-HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh---hhhhHHHHHHhhc
Q 043950 142 ----GCR----------N-LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ---VRPALPALAQLIH 203 (458)
Q Consensus 142 ----~~~----------~-~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~~~~l~~l~~ll~ 203 (458)
..+ + .+...+.+..++..+ ...|-.++..++..+.++.+..|..-... ...++..++.++.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 111 1 123345566666666 66778899999999999988764332222 2778899999999
Q ss_pred CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC----CccchhhHHHHHhHhhcCChhhHHHHHhcCCh
Q 043950 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP----SPSVLTPALWTVGNIVMGDDFQTQCIINHGAV 279 (458)
Q Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 279 (458)
+.-..+|..++..|..++..++...+.+.=.+++..|+.++... ..-|...|+..+.||...+..+...+.+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 99999999999999999988886666555568899999999863 23477889999999999998888888899999
Q ss_pred HHHHHHhccCC--h--------hhH--HHHHHHHHHHhhc-CCH----HHH-HHHHHcCChHHHHHHhccC--ChhhHHH
Q 043950 280 PCLLALLIHNH--K--------KSI--KKVACWTISNITA-GNR----EQI-QAVIDAGLIVPLVNVLQDA--EFDIKKE 339 (458)
Q Consensus 280 ~~l~~ll~~~~--~--------~~v--~~~a~~~l~nl~~-~~~----~~~-~~l~~~~~~~~L~~ll~~~--~~~~~~~ 339 (458)
|.|.++|.... + .+| ...+..++..++. +++ ... ..+...+++..|+.++.++ ..+++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 99998885321 1 111 1345566666665 222 222 3456789999999998876 5789999
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHCC----------ChHHHHhhccC-CCHHHHHHHHHHHHHHHHhchhh
Q 043950 340 AALAIANATVRGTHEQIKYLVREG----------CIKPLCDLLLC-VDPKIVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 340 a~~~L~~l~~~~~~~~~~~l~~~~----------~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~~~ 397 (458)
++.++++.+.++. .....+.+.. .+-.+..+..+ .....|..++.++..++-.....
T Consensus 337 siitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 337 SIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 9999999998653 3333333321 12223333333 34567888888888887665554
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.4e-09 Score=90.77 Aligned_cols=191 Identities=19% Similarity=0.197 Sum_probs=159.5
Q ss_pred CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 283 (458)
Q Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 283 (458)
+.+.+-++.++.-|..++..-+ ....++..|+...++..+++++..+|+.|+++++..+..+|.....+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 3456777778888877774443 566688999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950 284 ALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD--AEFDIKKEAALAIANATVRGTHEQIKYLVR 361 (458)
Q Consensus 284 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~ 361 (458)
..+.++.+..+|..|.++++.+.++++.....+...+....|.+++++ .+..++..++..+..++... ......+..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHHHH
Confidence 999988667889999999999999988888888888889999999998 57788899999999998753 233345566
Q ss_pred CCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 362 EGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 362 ~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.++...+..+...-+.++...++.++.........
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 77777788888888888888888887777654443
No 53
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.20 E-value=3.1e-09 Score=97.50 Aligned_cols=313 Identities=15% Similarity=0.141 Sum_probs=204.6
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh--hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-
Q 043950 109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR--NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ- 185 (458)
Q Consensus 109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~- 185 (458)
-++..++.+|++..+.+|..|+...+.++.--..|. ..+...|. .|.+.+ ...++++....+.+++.+.+....
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 356778889999999999999999988863222211 12222232 234444 567888888888888877665422
Q ss_pred CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC
Q 043950 186 PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265 (458)
Q Consensus 186 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 265 (458)
....-..+++|.+.+.|++....+....+..++.++...++.+..-.-..+.--|+..|++.+.++|++|..+++.++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 22334589999999999999999999999999999987776543222234555677888888899999999888888753
Q ss_pred C-h-hhHHHHHh-----------------------c---CChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHH
Q 043950 266 D-D-FQTQCIIN-----------------------H---GAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAV 316 (458)
Q Consensus 266 ~-~-~~~~~~~~-----------------------~---~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l 316 (458)
- + +....+.+ . .++|.++.=...+ +..|+.-...+++.+.. ......+++
T Consensus 761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TP-e~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETP-EANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCc-hhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 11111110 1 2344444444455 66777777777777764 111223333
Q ss_pred HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH-HHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ-IKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
. .+.|.|-+.+.+.|+--+..|...+.+++.++.--. ...++. ++..|...+-.+.|.+.......+..+...-.
T Consensus 840 y--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg 915 (975)
T COG5181 840 Y--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQSFDEGMESFATVLG 915 (975)
T ss_pred H--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc
Confidence 3 377888889999999999999999999988752110 111111 23334444446778887776666665543322
Q ss_pred hhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950 396 AEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 449 (458)
..-.++.+++=+-|++..|+++.-...+.++..+
T Consensus 916 --------------------~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~ 949 (975)
T COG5181 916 --------------------SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFD 949 (975)
T ss_pred --------------------cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcc
Confidence 1112566777788999999998888877765543
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3e-09 Score=92.30 Aligned_cols=187 Identities=17% Similarity=0.176 Sum_probs=156.1
Q ss_pred cccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH
Q 043950 163 HAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE 242 (458)
Q Consensus 163 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ 242 (458)
+.+.+-+..++.-|..++.+-.+.......+++..+..++++.+..++..|+++++.++++++...+.+.+.|+++.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 44566777788888888877655555555677777777999999999999999999999999999999999999999999
Q ss_pred HhCCC-CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 043950 243 LLGHP-SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAG 320 (458)
Q Consensus 243 ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 320 (458)
.+.++ +..++..|+++++.+.+.++.....+...+++..|.+.++++ .+...++.++..++.+...........-..+
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 99875 456779999999999999999999999999999999999984 2778889999999999975545555444566
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
+-..+..+....+.+++..++.++..+..
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 77777777788899999999999888865
No 55
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.3e-07 Score=84.24 Aligned_cols=217 Identities=16% Similarity=0.144 Sum_probs=157.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
.+.++.+|++.-+.++..|+..+.++...- ++..+ ..+|.|.+-|.+++ +.++..|+.+++.++..+|.+--
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence 567888899999999999998888875542 33333 35899999999999 89999999999999998776543
Q ss_pred HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH--Hhhc
Q 043950 105 VIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS--KLCK 181 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~--~l~~ 181 (458)
..-|.+.+++.+ .+.=+--..+..+++|+--.|.... ..++++..++....-..+...+..++. +++.
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 235788888765 3333344467788888766665433 367889888843222334444433332 2222
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
+ .........-+++.|-.++.+.|+..+.-++-+++.+....+...+. .-+.++++|.+.++++|..|+..+.-
T Consensus 289 g-~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 G-MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred C-CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence 2 12344556788899999999999999999999999999776655442 24778999999999999999999877
Q ss_pred hhc
Q 043950 262 IVM 264 (458)
Q Consensus 262 l~~ 264 (458)
+..
T Consensus 363 mVs 365 (877)
T KOG1059|consen 363 MVS 365 (877)
T ss_pred Hhh
Confidence 764
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.15 E-value=3e-09 Score=95.77 Aligned_cols=226 Identities=20% Similarity=0.274 Sum_probs=158.4
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCchhhHHhh------hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 111 VPIFVKLLA--SPSDDVREQAVWALGNVAADSPGCRNLVLR------EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 111 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
...++.+++ +.++++.+.++..+..+..+++...+.+.. .....++++++ ..+|..+...++..+..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 455555554 368899999999999999988876666554 22578888866 677999999999999999988
Q ss_pred CCCCChhhhhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-----CC--CCccc
Q 043950 183 KPQPPFDQVRPALPALAQLIH----LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-----GH--PSPSV 251 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~~ 251 (458)
.+........+.++.+...+. +++.+.+..++.++.++..... ....+.+.++++.+..++ .+ .+..+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 766555544566666666655 4566778999999999985544 556688899999999999 22 34567
Q ss_pred hhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHH-HHHHHHHcCChHHHHHHhc
Q 043950 252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNRE-QIQAVIDAGLIVPLVNVLQ 330 (458)
Q Consensus 252 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~ll~ 330 (458)
...++.+++-++. +++....+.+.++++.+.++++.....+|-+-+..++.|++...+. ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 7889999998875 6777788888889999999999887889999999999999974433 6777778777765555544
Q ss_pred c--CChhhHHH
Q 043950 331 D--AEFDIKKE 339 (458)
Q Consensus 331 ~--~~~~~~~~ 339 (458)
. .|+++...
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 3 26666543
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3e-08 Score=93.98 Aligned_cols=342 Identities=17% Similarity=0.157 Sum_probs=235.5
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+.+|.++++....|.+.....-..+.+.+... ++. ..+.++.+++=..+++ +.+|..|++.++.+--+ ...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~-P~~-----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~--~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK-PDL-----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD--KIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC-chH-----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh--HHH
Confidence 45677777777777777777767777776653 111 2256888888888888 89999999888876652 222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
. .....+...+++.++.+|..+..+..++-..++ +.+...|.++.|-.++ .+.++.+..+|+.++..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 2 236889999999999999999999999866554 3566778888888888 688899999999999999987
Q ss_pred CCC-CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 183 KPQ-PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 183 ~~~-~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
.++ .........+..++..+..-+.--+..++.++.+-...++...+ .++..+...+.+.+..+...+..++.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 654 33344456666666666655666666677777666544432222 367888899999999999999999988
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHH-------------------------H
Q 043950 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA-------------------------V 316 (458)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~-------------------------l 316 (458)
+....+.... .+-..+-++++.++.+. . .+...|..-+.-+..+.++.... +
T Consensus 266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 8765555323 33345677777777766 3 45554444444333333331110 0
Q ss_pred HH-c---CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950 317 ID-A---GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 317 ~~-~---~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~ 392 (458)
.. . .++..+......-|.+....+++|+++++...+.. ++.++.|.++++...+.+...+...+..+++
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 00 0 13333444444558888999999999998743211 6789999999998877888888888998888
Q ss_pred hchhh
Q 043950 393 VGEAE 397 (458)
Q Consensus 393 ~~~~~ 397 (458)
+-++.
T Consensus 416 kyP~~ 420 (734)
T KOG1061|consen 416 KYPNK 420 (734)
T ss_pred cCCCc
Confidence 76654
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.4e-07 Score=89.61 Aligned_cols=292 Identities=16% Similarity=0.114 Sum_probs=179.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950 27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI 106 (458)
Q Consensus 27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 106 (458)
.+.+-|++.+.-++-.|+.+|+++++. +..+ .+.|..-+++++.+ +-+|..|+.|...+....|+....+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~---Emar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSP---EMAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCH---HHhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence 334455566666777777777777543 2222 35666677777776 7777777777777777656554433
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc--------------cccHHHHHHH
Q 043950 107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE--------------HAKLSMLRIA 172 (458)
Q Consensus 107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~--------------~~~~~~~~~a 172 (458)
++....+|.+.+..|--.++..+..+|..+++.-....+ .++.++..|++ -++|-++..+
T Consensus 181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 455566666655555555555666666554432222222 34444444421 1355666666
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc
Q 043950 173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHLD---DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP 249 (458)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~ 249 (458)
+..|+-|-.+.+ .....+..++..+..-..++ ...+...+..++..+-..+.-+ .-.+..|-++|.+.+.
T Consensus 255 LrlLriLGq~d~-daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr------vlainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 255 LRLLRILGQNDA-DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR------VLAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHhcCCCc-cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH------HHHHHHHHHHhcCCcc
Confidence 666666665532 22223333333333322221 1345555555555543332211 1246778888888888
Q ss_pred cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh
Q 043950 250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL 329 (458)
Q Consensus 250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll 329 (458)
.+|.-|+..|......++...+.- -..++++|+++ |..+|+.|......+... .++.. ++..|+.+|
T Consensus 328 NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL 394 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFL 394 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHH
Confidence 888888888888887666554432 34588999999 999999999998888753 34443 455788999
Q ss_pred ccCChhhHHHHHHHHHHhhcCCCHH
Q 043950 330 QDAEFDIKKEAALAIANATVRGTHE 354 (458)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~~~~ 354 (458)
...+++++..++.-+..++....++
T Consensus 395 ~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 395 ESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCc
Confidence 8889999999999999998765543
No 59
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.3e-08 Score=92.39 Aligned_cols=377 Identities=14% Similarity=0.095 Sum_probs=236.9
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+..|.+.+++++.++.++..|+.+..++.... ++... .+++..-++|.+.+ .-+-..++..+..++..+++..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e-----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVE-----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHH-----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHH
Confidence 34778888999999999999999999997764 33222 35777788888887 6888889999999998877766
Q ss_pred HHHHhCCChHHHHHhh----CC-----------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc--c
Q 043950 103 NVVIDHGAVPIFVKLL----AS-----------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA--K 165 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll----~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~ 165 (458)
..+.+ .++-++..| .+ ++|-++-..++.|.-+..+++...+.+.+ ++..+......+. .
T Consensus 215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~G 290 (866)
T KOG1062|consen 215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccch
Confidence 65554 444444444 22 46888999999999998888776554432 2222222221111 2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC
Q 043950 166 LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG 245 (458)
Q Consensus 166 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 245 (458)
..+...+..++..+-.+. ....-++..|.+++.+.|..++.-++..|......++...+.. =..++.+|+
T Consensus 291 nAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~ 360 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLK 360 (866)
T ss_pred hHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhc
Confidence 345555556665554332 2334556778899999999999999999999997776554432 267889999
Q ss_pred CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHH
Q 043950 246 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVP 324 (458)
Q Consensus 246 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~ 324 (458)
+++..+++.|+.....+.. +.+... +++.|+..|.+. +++.|...+.-+..++. -.|+.+. .+..
T Consensus 361 DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------~idt 426 (866)
T KOG1062|consen 361 DPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------HIDT 426 (866)
T ss_pred CCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------HHHH
Confidence 9999999999999988874 334343 467789999988 99999999999998886 2333333 3445
Q ss_pred HHHHhccCChhhHHHHHHHHHHhhcCCCH----HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhccc
Q 043950 325 LVNVLQDAEFDIKKEAALAIANATVRGTH----EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNT 400 (458)
Q Consensus 325 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~ 400 (458)
+.+.+...-.-++..+...+..+...+.. .....+... +..-. ++.-+++.+...+.|+|+.+-+..-.....
T Consensus 427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~~~~~ 503 (866)
T KOG1062|consen 427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLDGANE 503 (866)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhcCccc
Confidence 56666555444444444445444443311 111111110 00000 223344556777888888765432221100
Q ss_pred CCCCCchhHHHHHHHhcchHHHHHhhhcC--CChHHHHHHHHHHHHh
Q 043950 401 GSTIGDVNQYARLVEEDEGFKKIEGLKSH--DNNGIREKAVKILETY 445 (458)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~ 445 (458)
.-.....+...+..|..++.+ .+..++.+|...+-++
T Consensus 504 --------~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KL 542 (866)
T KOG1062|consen 504 --------EEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKL 542 (866)
T ss_pred --------cCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 002223345556666666422 3355555555555443
No 60
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.4e-08 Score=90.86 Aligned_cols=320 Identities=17% Similarity=0.109 Sum_probs=208.5
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 043950 63 IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142 (458)
Q Consensus 63 ~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 142 (458)
.-+++++..+..+.+++ ..+|..|+..+.|++.. ...........+...++++..+.+..++. +...+-.+..+...
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34578899999999998 79999999999999873 22222223345567788888777666664 44555555433221
Q ss_pred hhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950 143 CRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 143 ~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 219 (458)
-+.. .--++.++.++. ...++..+.....-+..+-..++.........+++.+..++.++..+++.-.=.++++
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1110 112444444442 5567888888877777776654333334458889999999999999998655554444
Q ss_pred hc---cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh-hHH
Q 043950 220 LS---YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK-SIK 295 (458)
Q Consensus 220 l~---~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~v~ 295 (458)
+. .+++... --...++.++.-+.++++.++..|+..+..+..-.+...- ..-+|++..++.++.+. +. .++
T Consensus 235 fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~-e~~~i~ 309 (675)
T KOG0212|consen 235 FLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDT-EEMSIK 309 (675)
T ss_pred HHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCC-ccccHH
Confidence 43 1222211 1225678899999999999999999888888765544322 23467888888888877 44 355
Q ss_pred HHHHHHHHHhhc--CCHHHHHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 043950 296 KVACWTISNITA--GNREQIQAVID-AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL 372 (458)
Q Consensus 296 ~~a~~~l~nl~~--~~~~~~~~l~~-~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll 372 (458)
..+...-..+.+ +.+..... ++ ..++..+...+.++..+.|..++.-+..+-.....+... ........|..-+
T Consensus 310 ~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tL 386 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTL 386 (675)
T ss_pred HHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhh
Confidence 444333222222 11111111 22 236778888889989999999988888886543322211 2345778888888
Q ss_pred cCCCHHHHHHHHHHHHHHHHhchh
Q 043950 373 LCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 373 ~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.+.+++|+..++..+..++.....
T Consensus 387 sd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 387 SDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cCchhHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999987655
No 61
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.99 E-value=3.2e-08 Score=89.21 Aligned_cols=227 Identities=15% Similarity=0.151 Sum_probs=160.6
Q ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCCChhhhh-------hhHHHHHHhhcCCChHHHHHHHHHHHHhccCC
Q 043950 153 LIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQPPFDQVR-------PALPALAQLIHLDDEEVLSDACWTLSYLSYGT 224 (458)
Q Consensus 153 l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-------~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~ 224 (458)
...++.++..- +++++.++++..+..+....+........ .....+..++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 34455555444 77889999999999999887644433332 14566777888999999999999999999776
Q ss_pred hhhHHHHHHhCcHHHHHHHhCC----CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh------ccCChhhH
Q 043950 225 NDKIQVVIEAGVCRRLVELLGH----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL------IHNHKKSI 294 (458)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~ll~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll------~~~~~~~v 294 (458)
+....... .+.++.++..+.+ ++..++..++.++.++.. .+..+..+.+.++++.+..++ .++...++
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 65444222 4556677766654 445677889999999986 777888888999999999999 44447789
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950 295 KKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 295 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 373 (458)
+.+++.++..++- +++....+.+.++++.|.++++.. .+++..-++.++.|++..........++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999999998875 567888888888999999999764 67899999999999998876567888888888877777665
Q ss_pred --CCCHHHHHH
Q 043950 374 --CVDPKIVTV 382 (458)
Q Consensus 374 --~~~~~v~~~ 382 (458)
..|+++.+-
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 367777654
No 62
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=2e-06 Score=80.15 Aligned_cols=315 Identities=15% Similarity=0.087 Sum_probs=214.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
.++..|+.-+..+. +.+|.....++..+......... ..+.+.+.+++......-+..+.+.++.+..+... .
T Consensus 96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~ 168 (569)
T KOG1242|consen 96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI--E 168 (569)
T ss_pred HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH--h
Confidence 35677788888888 89999888888766552111111 12357788888888888888899999988776533 3
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
...+.+.+..+.....+..+...++.+..+.-..+..-...........+|.+..-+.+..+.++..+..+...+...-+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 45567788888888854444444444555544444443333344456777777777778888999888877766653322
Q ss_pred -hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950 226 -DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304 (458)
Q Consensus 226 -~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n 304 (458)
.... .+++.++.-+....+.-+..++..++.++...+.+.... -..++|.+.+.|-+. .+++|+.+..++..
T Consensus 249 ~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~-lp~iiP~lsevl~DT-~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 249 AYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLC-LPDLIPVLSEVLWDT-KPEVRKAGIETLLK 321 (569)
T ss_pred cchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHH-HhHhhHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 2222 234555555555588899999999999988777665544 468999999999999 99999999999999
Q ss_pred hhc--CCHHHHHHHHHc----------------------------------CChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950 305 ITA--GNREQIQAVIDA----------------------------------GLIVPLVNVLQDAEFDIKKEAALAIANAT 348 (458)
Q Consensus 305 l~~--~~~~~~~~l~~~----------------------------------~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 348 (458)
+++ .+++ ++.++.. -++|.|.+-+...+...++.++..+.|++
T Consensus 322 ~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 322 FGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 986 3433 4333210 02555555666668888899999999998
Q ss_pred cCC-CHHH-HHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhh
Q 043950 349 VRG-THEQ-IKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 349 ~~~-~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~ 397 (458)
.-- ++.. ..++-+ +++.+-..+....|++|..+..+|+.+.+.....
T Consensus 401 ~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred HhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 643 3333 233222 5566666666778999999999998888765554
No 63
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=9.5e-08 Score=93.08 Aligned_cols=271 Identities=18% Similarity=0.226 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 116 (458)
..-|+.|........+..+.++.+ +|..++.|-++ --|..|+..|+.+..-.+-....-..-|++|..++
T Consensus 450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 456777777776666655444333 56667766653 34788999999999877888888888899999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc--ccHHHHHHHHHHHHHhhcCCCCCChhhh-hh
Q 043950 117 LLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH--AKLSMLRIATWTLSKLCKGKPQPPFDQV-RP 193 (458)
Q Consensus 117 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~ 193 (458)
+|+++-.++|..-+.+.+.|..-++.|+..+++.++-.+.+..+..+ -+++-+..++.+|..++.+.+..+.... .+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 99999999999999999998888888888888888887888777542 2457888999999999998755555444 66
Q ss_pred hHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC----Chh
Q 043950 194 ALPALAQLIHLD-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG----DDF 268 (458)
Q Consensus 194 ~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~----~~~ 268 (458)
++..+...+.++ .+-.+..++-||+.+-++.+...=.-.+.+..+.|+.+|.++-++||..|+++|+.+... .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 777788888874 688899999999999977665444355667899999999999999999999999999874 222
Q ss_pred hHHHH------------HhcCCh---HHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043950 269 QTQCI------------INHGAV---PCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID 318 (458)
Q Consensus 269 ~~~~~------------~~~~~~---~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 318 (458)
..... ++..+. -.++.+++.. .+-++.+.+-+++.++.+...++...+-
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~ 743 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAG 743 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence 22221 122222 2667777777 8999999999999999876666554443
No 64
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.7e-06 Score=70.44 Aligned_cols=363 Identities=16% Similarity=0.154 Sum_probs=239.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCcc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPR---IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
.|.|-..|..++..+..-++..+..++.+.+... +..+++.++.+.++..+..++ .++...|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 5566666778889999999999988877653222 344568899999999999998 7999999999999998 6888
Q ss_pred HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 102 TNVVIDHGAVPIFV--KLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 102 ~~~~~~~~~i~~L~--~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
...+++++..+.+- .+-...+.-.|..+...+..+..-++.....+...|.+..+..-+....|.-++..++.....|
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88888877665543 3333455666777888888888888888888888899999998886557888889999999999
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcC--CChHHHHHHHHHHHHhccCCh--h-hHHHHHHh--CcHHHHHHHhCCCCccch
Q 043950 180 CKGKPQPPFDQVRPALPALAQLIHL--DDEEVLSDACWTLSYLSYGTN--D-KIQVVIEA--GVCRRLVELLGHPSPSVL 252 (458)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~l~~ll~~--~~~~~~~~~~~~l~~l~~~~~--~-~~~~~~~~--~~i~~L~~ll~~~~~~~~ 252 (458)
.............++++.+...+.. .+|--.-.++...+.+-.... + .-+.+.+. -.++..++.+..+++...
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 8776666666678899988888873 344444444444443331110 0 00111111 234555667777899999
Q ss_pred hhHHHHHhHhhcCChhhHHHHHhcCC--hHHHH-HHhccCChhhHHHHHHHHHHHhhcC---CHHHH---------HHHH
Q 043950 253 TPALWTVGNIVMGDDFQTQCIINHGA--VPCLL-ALLIHNHKKSIKKVACWTISNITAG---NREQI---------QAVI 317 (458)
Q Consensus 253 ~~a~~~l~~l~~~~~~~~~~~~~~~~--~~~l~-~ll~~~~~~~v~~~a~~~l~nl~~~---~~~~~---------~~l~ 317 (458)
..|..+++.+.+.. +..+.+.+.|- .+.++ .....+ ...-+..+..+|.++++. .++++ ..++
T Consensus 322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 99999999997643 33344443332 22222 222222 233455677888888751 22221 1111
Q ss_pred -H-------cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC---CHHHHHHHHHH
Q 043950 318 -D-------AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV---DPKIVTVCLEG 386 (458)
Q Consensus 318 -~-------~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~~~~ 386 (458)
+ -.-...+..+++.+.++++..++..+..++.. .......+...++++...+.--.. ..+-+..++++
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDastEhaKaakdAkYeccKA 478 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKA 478 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHH
Confidence 1 13355667778888999999999999999864 333444445667776666543321 12345556666
Q ss_pred HHHHHH
Q 043950 387 LENILK 392 (458)
Q Consensus 387 l~~l~~ 392 (458)
+.+-+-
T Consensus 479 iaeafl 484 (524)
T KOG4413|consen 479 IAEAFL 484 (524)
T ss_pred HHHHHH
Confidence 655444
No 65
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.90 E-value=1.9e-06 Score=79.11 Aligned_cols=348 Identities=11% Similarity=0.029 Sum_probs=225.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHH----------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 35 DDNSLQLEATTQFRILLSIERSPRIEDVI----------QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----------~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
.++..|..|..+|.|-+....+....... ..-+-...++.|.++. |..-..|+..++.++.-.
T Consensus 53 s~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~e-pr~~~~Aaql~aaIA~~E------ 125 (858)
T COG5215 53 SNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPE-PRFCTMAAQLLAAIARME------ 125 (858)
T ss_pred CcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhh------
Confidence 35778888888888765543222111111 1111223345566777 777788888888877621
Q ss_pred HHhCCChHHHHH----hhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC-HHHHHHH-hcccccHHHHHHHHHHHH
Q 043950 105 VIDHGAVPIFVK----LLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEA-LIPLLAQ-LNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 105 ~~~~~~i~~L~~----ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~l~~~-l~~~~~~~~~~~a~~~l~ 177 (458)
+..+..|-|.. .... .....+..++.++++.|..... ...+...+. +-.++.. +...++..++-.++.+|.
T Consensus 126 -lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~ 203 (858)
T COG5215 126 -LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALM 203 (858)
T ss_pred -CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence 12233444433 3333 4457888899999999966533 233333333 3333333 335567778888888888
Q ss_pred Hhh-cCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhH
Q 043950 178 KLC-KGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPA 255 (458)
Q Consensus 178 ~l~-~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 255 (458)
+-+ .-. .........-+++...+.-+.+|.+++..+..|+..+..-.-...+...+.-+.....+.++++++++...+
T Consensus 204 dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qa 283 (858)
T COG5215 204 DSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQA 283 (858)
T ss_pred HHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 722 111 111222234566777788889999999999999999986655566667777788888899999999999999
Q ss_pred HHHHhHhhcCChhhHHHHH----------------hcCChHHHHHHhccC------ChhhHHHHHHHHHHHhhcCCHHHH
Q 043950 256 LWTVGNIVMGDDFQTQCII----------------NHGAVPCLLALLIHN------HKKSIKKVACWTISNITAGNREQI 313 (458)
Q Consensus 256 ~~~l~~l~~~~~~~~~~~~----------------~~~~~~~l~~ll~~~------~~~~v~~~a~~~l~nl~~~~~~~~ 313 (458)
....+.+|....+...... -.+++|.++++|... .+..+...|..+|--++....
T Consensus 284 vEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--- 360 (858)
T COG5215 284 VEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--- 360 (858)
T ss_pred HHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh---
Confidence 9888888754322111111 124789999999762 145677777777777764211
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 314 QAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 314 ~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
+.+++. ++..+-.-+.+++..-++.+..+++.+..+.......++.. ..++.+..++.++---++..+.|+++.|.+.
T Consensus 361 d~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 361 DKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 122222 44455556778888899999999999999877777666544 5677788877766667888899999999876
Q ss_pred chh
Q 043950 394 GEA 396 (458)
Q Consensus 394 ~~~ 396 (458)
...
T Consensus 439 va~ 441 (858)
T COG5215 439 VAM 441 (858)
T ss_pred HHH
Confidence 444
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.90 E-value=8.1e-07 Score=81.40 Aligned_cols=350 Identities=13% Similarity=0.047 Sum_probs=211.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh----CCCh
Q 043950 36 DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID----HGAV 111 (458)
Q Consensus 36 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~----~~~i 111 (458)
......+++.++..++....++........-++.....-++.+.+..+|..|+.+|.+-+.. .+..+.. +-++
T Consensus 147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~m 223 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFM 223 (858)
T ss_pred chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhh
Confidence 35677888888888876542322222222223333344455655578999999998873221 1111111 1235
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC----
Q 043950 112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP---- 187 (458)
Q Consensus 112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~---- 187 (458)
+..+..-+.++.+++..+..+|..+..-.-.+-...++ +.+..+.....++++.++...+....+.+|.......
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 66777778899999999999999886432111122222 2344444444478888888888888777776541111
Q ss_pred -------------hhhhhhhHHHHHHhhcC-------CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950 188 -------------FDQVRPALPALAQLIHL-------DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247 (458)
Q Consensus 188 -------------~~~~~~~l~~l~~ll~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 247 (458)
......++|.+..+|.. +|+.+...+..||--.++...+ .+.+. ++..+-+-+.++
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~p-Vl~FvEqni~~~ 378 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMRP-VLGFVEQNIRSE 378 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHHH-HHHHHHHhccCc
Confidence 11135688999999864 3466667777777666543222 12222 455555667788
Q ss_pred CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHH
Q 043950 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVN 327 (458)
Q Consensus 248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ 327 (458)
++.-++.|..+++.+..+..+....-+-...+|.+...+.++ .-.++..++|+++.++.+-+..+. ..|-++..+.
T Consensus 379 ~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vs 454 (858)
T COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVS 454 (858)
T ss_pred hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHH
Confidence 999999999999999987766655555567899999999877 788999999999999854333222 2333333333
Q ss_pred Hhc---cCChhhHHHHHHHHHHhhcCCCHHH---HHHHHH--CCChHHHHhhcc--CCCHHHHHHHHHHHHHHHHhchhh
Q 043950 328 VLQ---DAEFDIKKEAALAIANATVRGTHEQ---IKYLVR--EGCIKPLCDLLL--CVDPKIVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 328 ll~---~~~~~~~~~a~~~L~~l~~~~~~~~---~~~l~~--~~~l~~L~~ll~--~~~~~v~~~~~~~l~~l~~~~~~~ 397 (458)
... .+.+.+..++.|...|++.+-.+.. ...+.. ...+..|+..-+ ..+...+..+..+|+.++.+.+..
T Consensus 455 a~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~ 534 (858)
T COG5215 455 ASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDA 534 (858)
T ss_pred HHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchh
Confidence 222 2367788889999999976432211 111111 011222222111 234467777788888877765553
No 67
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=3e-07 Score=87.41 Aligned_cols=347 Identities=16% Similarity=0.142 Sum_probs=225.1
Q ss_pred hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950 19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT 98 (458)
Q Consensus 19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 98 (458)
....++++.+++-..++++.+|..|++.+..+-- ..... -+...+.+.+++.+ +-+|..++.+..++-..+
T Consensus 82 ~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~e-----y~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 82 DLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITE-----YLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID 152 (734)
T ss_pred hHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHH-----HHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC
Confidence 4556678888888888899999988877665511 11121 25678889999998 899999999988887743
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
.+.....|.++.|..++.+.++.+..+|+.+|..+...++...........+..++..+... .--.-+.++..
T Consensus 153 ---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~EW~qi~IL~~ 225 (734)
T KOG1061|consen 153 ---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TEWGQIFILDC 225 (734)
T ss_pred ---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hhhhHHHHHHH
Confidence 44566789999999999999999999999999999876654211222222344444444221 12222445566
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
++...+... .....++..+...+.+.++.+...+...+.+....-..... ..-..+-+.++.++.+.. ++...++.-
T Consensus 226 l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrN 302 (734)
T KOG1061|consen 226 LAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRN 302 (734)
T ss_pred HHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhh
Confidence 666654444 45577888888889999988888888888777754443222 233345566777776655 555555544
Q ss_pred HhHhhcCChhhHHHH-------------------------H-hcCChHHHHHHh---ccCChhhHHHHHHHHHHHhhcCC
Q 043950 259 VGNIVMGDDFQTQCI-------------------------I-NHGAVPCLLALL---IHNHKKSIKKVACWTISNITAGN 309 (458)
Q Consensus 259 l~~l~~~~~~~~~~~-------------------------~-~~~~~~~l~~ll---~~~~~~~v~~~a~~~l~nl~~~~ 309 (458)
+.-+....+.....- . +.++-+.+-++. ..- |.+..+.+.+++++++..-
T Consensus 303 i~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~ 381 (734)
T KOG1061|consen 303 INLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKA 381 (734)
T ss_pred HHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhh
Confidence 444333222211100 0 111111122222 222 6677889999999998643
Q ss_pred HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHH
Q 043950 310 REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLE 388 (458)
Q Consensus 310 ~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~ 388 (458)
++. .+.+..|++++...-..+..+++..+..+........ +. ++..+...+++ ++|+.+....|+++
T Consensus 382 e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~-----vv~~l~~~~~sl~epeak~amiWilg 449 (734)
T KOG1061|consen 382 EQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ES-----VVAILCENLDSLQEPEAKAALIWILG 449 (734)
T ss_pred hhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hh-----hhhhhcccccccCChHHHHHHHHHHh
Confidence 221 5789999999998877788888889999887654222 22 35555555553 67888888899998
Q ss_pred HHHHhchhh
Q 043950 389 NILKVGEAE 397 (458)
Q Consensus 389 ~l~~~~~~~ 397 (458)
......++.
T Consensus 450 ~y~~~i~~a 458 (734)
T KOG1061|consen 450 EYAERIENA 458 (734)
T ss_pred hhhhccCcH
Confidence 887765554
No 68
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.88 E-value=1.4e-07 Score=84.19 Aligned_cols=272 Identities=14% Similarity=0.081 Sum_probs=184.3
Q ss_pred hhHhhccHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 043950 18 LQTKLEILPAMVAGVWSDD--NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIA 95 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~ 95 (458)
..+.-|.+..|++++.+++ .+++.++.+.|..+... ++.+.+...| ...++.+-+....++.+...+.+|.++.
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 3455678999999999887 45699999999999774 5666777666 5556666665554799999999999999
Q ss_pred CCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHH
Q 043950 96 SGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATW 174 (458)
Q Consensus 96 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~ 174 (458)
.++++....++..|+++.++-.....++.+.++|+.+|+|++-.. ...+..+++..+-..|+-+. .+.|.-++.++|-
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHH
Confidence 999999999999999999999999889999999999999998433 34555666777777777666 6668888999999
Q ss_pred HHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhh
Q 043950 175 TLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP 254 (458)
Q Consensus 175 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 254 (458)
+.+.+..+..........+.+...-.++.+-|+.--.. ...+..+ --..+.++.|+.+|.+...+.+.-
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i 398 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCI 398 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhh
Confidence 99999987644444444566655556666655533211 1111111 111235788888888654333332
Q ss_pred HHHHHhHhhc-CCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 255 ALWTVGNIVM-GDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 255 a~~~l~~l~~-~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
+.+-++.=+. ... ...+.+.+-|.++.|.++.+++ +..-.+.|..+|.-+.
T Consensus 399 ~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG 451 (832)
T KOG3678|consen 399 GAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence 2222211111 111 1223344668899999988877 6544444555554443
No 69
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=3.6e-06 Score=80.16 Aligned_cols=215 Identities=18% Similarity=0.171 Sum_probs=123.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 147 (458)
|..+-+-|++++ +.+|..|+++|..+--. ++..-.+-++-+...+.++.+|..|+.++-.+-.-+++....
T Consensus 110 IntfQk~L~DpN-~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q- 180 (968)
T KOG1060|consen 110 INTFQKALKDPN-QLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ- 180 (968)
T ss_pred HHHHHhhhcCCc-HHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH-
Confidence 455555666777 67777777776654331 111111233444455677788888888877776555554332
Q ss_pred hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC---
Q 043950 148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT--- 224 (458)
Q Consensus 148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~--- 224 (458)
+..+++.|..+.++-+...|..++-.+|-+ ....+.+-...+..++.+-+.--+..++..|...+...
T Consensus 181 -----L~e~I~~LLaD~splVvgsAv~AF~evCPe----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 181 -----LEEVIKKLLADRSPLVVGSAVMAFEEVCPE----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred -----HHHHHHHHhcCCCCcchhHHHHHHHHhchh----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 334555555777777778777777777643 34445566666666666555544555555554444220
Q ss_pred hhhH---------------------HH-HHHh---CcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCCh
Q 043950 225 NDKI---------------------QV-VIEA---GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAV 279 (458)
Q Consensus 225 ~~~~---------------------~~-~~~~---~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 279 (458)
+... .. ..+. -+++..-.++.+.++.+...++.+...++-.+ .. ..++
T Consensus 252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~-----~~i~ 324 (968)
T KOG1060|consen 252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QV-----TKIA 324 (968)
T ss_pred ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HH-----HHHH
Confidence 0000 00 0000 02344445666778888888888888887433 11 2457
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhcCC
Q 043950 280 PCLLALLIHNHKKSIKKVACWTISNITAGN 309 (458)
Q Consensus 280 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~ 309 (458)
+.|+.+|.++ ..++......+..++...
T Consensus 325 kaLvrLLrs~--~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 325 KALVRLLRSN--REVQYVVLQNIATISIKR 352 (968)
T ss_pred HHHHHHHhcC--CcchhhhHHHHHHHHhcc
Confidence 7888888754 456666666666666443
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=9.8e-07 Score=80.73 Aligned_cols=350 Identities=11% Similarity=0.093 Sum_probs=212.3
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCC
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNI----ASGT 98 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l----~~~~ 98 (458)
+.+|+++.++...|..++..|+..+.+++..-+.+.. ..-..+...+.++..+++ +.++.. +..+-.+ ....
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~--~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVL--VYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTES 159 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcc--cchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhcccc
Confidence 3478888888899999999999999888765322221 222346677788877776 565543 3333333 3221
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh-hhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL-REEALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
.. .+-=.+.+|.|-.-+...++..|...+.-+..+- ..|.. +++. -...++.++..+ .+++++++..+-.+++
T Consensus 160 ~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 160 AS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDL-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLS 233 (675)
T ss_pred cc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcH-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHH
Confidence 11 1111234555555555578888887776666653 33332 3322 223566777777 6777888877776666
Q ss_pred HhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc-cchhhH
Q 043950 178 KLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP-SVLTPA 255 (458)
Q Consensus 178 ~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a 255 (458)
++...- ..+........++.++.-++++++.++..++.-+..+..-.+... ...-+|++..+.+++.+.++ .++..+
T Consensus 234 ~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 234 EFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHH
Confidence 665433 122222456778889999999999999988877777765444322 23446788888888888766 355554
Q ss_pred HHHH---hHhhcCChhhHHHHHh-cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950 256 LWTV---GNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD 331 (458)
Q Consensus 256 ~~~l---~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~ 331 (458)
...- ..++.... .... ++ ..+++.+.+.+.++ ..+.|..+..-+..+-...+.++- .....+++.|...|++
T Consensus 313 ~~~n~~l~~l~s~~~-~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd 388 (675)
T KOG0212|consen 313 QMVNGLLLKLVSSER-LKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSD 388 (675)
T ss_pred HHHHHHHHHHHhhhh-hccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcC
Confidence 4332 22222111 1111 22 24677888888888 888888877666655543333222 2235689999999999
Q ss_pred CChhhHHHHHHHHHHhhcCCCHH-HHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 332 AEFDIKKEAALAIANATVRGTHE-QIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
.+.++...++..+.+++...+.. .+++ +..|..++..+..-+..++--++..++-.
T Consensus 389 ~sd~vvl~~L~lla~i~~s~~~~~~~~f------l~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 389 RSDEVVLLALSLLASICSSSNSPNLRKF------LLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred chhHHHHHHHHHHHHHhcCcccccHHHH------HHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 99999999999999999865432 2222 33344444444433444454455555443
No 71
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.9e-07 Score=89.81 Aligned_cols=248 Identities=17% Similarity=0.202 Sum_probs=191.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+.+|.+++.|-| .-.|+.|+..|.+++... ......-..-|+.|..++||+++. .+++..-+.+...+..-++.+.
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 456777777655 456778889999997765 777887788899999999999999 7999999999999887778888
Q ss_pred HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 103 NVVIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
..+++.++-..+++.|.. -+++-|..|+.+|+.++.+-+..++...+.+.+...+.+++++..+-++.-++-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 888888777788887765 24688999999999999887777888888888888888885545678899999999999
Q ss_pred hcCCCCCChhhh-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC----hhhHHHH------------HHhCcH---HH
Q 043950 180 CKGKPQPPFDQV-RPALPALAQLIHLDDEEVLSDACWTLSYLSYGT----NDKIQVV------------IEAGVC---RR 239 (458)
Q Consensus 180 ~~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~------------~~~~~i---~~ 239 (458)
-.+.+.....-. ......|..++.++-++++..+..+|+.+..+. ++....+ ++.-+. -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 888754444433 678889999999999999999999999988652 2222211 121122 25
Q ss_pred HHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 274 (458)
Q Consensus 240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 274 (458)
++..++...+-++....-+++.+..++......+.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 66677777888888888888888776665544443
No 72
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=5e-06 Score=78.43 Aligned_cols=276 Identities=14% Similarity=0.132 Sum_probs=191.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
++.+.++.+|.++. +-+|..|+.++..+....|+... ..+|.|..-|.++++.++..|+.+++.|++.+|..
T Consensus 144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn-- 215 (877)
T KOG1059|consen 144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN-- 215 (877)
T ss_pred HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--
Confidence 35677788999988 89999999999999886666543 34799999999999999999999999999888763
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC-hHHHHHHHHHHH--Hhcc
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD-EEVLSDACWTLS--YLSY 222 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~--~l~~ 222 (458)
.+ ..-|.+.++|..+.+.=+....+..+.+|+--. ......+++.+..++.+.. ..+...++.++. +++.
T Consensus 216 yL---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE----PRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 216 YL---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE----PRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred cc---cccHHHHHHHhccCCCeehHHHHHHHhhccccC----chhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 11 234666777766666556666777777776443 3445778888888888654 344444444443 2332
Q ss_pred CChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 223 GTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI 302 (458)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l 302 (458)
+.++... .+. -.+..|-.++.+.++.++.-++.+++.+...++...+. --+.++.+|.+. |+.+|..|...+
T Consensus 289 g~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL 360 (877)
T ss_pred CCCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence 2211111 111 14678888889999999999999999999888766553 356789999998 999999999999
Q ss_pred HHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950 303 SNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 303 ~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 373 (458)
.-+.. .+++.. ++..|+..+... ....+.+.+.-+..+|..++...+..+-- ++..|+++..
T Consensus 361 ~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW--YlsVlveLa~ 423 (877)
T KOG1059|consen 361 YGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW--YLSVLVELAR 423 (877)
T ss_pred HHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH--HHHHHHHHHh
Confidence 98874 344443 444566655443 34778888888888877654443333221 3455555554
No 73
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.7e-05 Score=77.98 Aligned_cols=329 Identities=16% Similarity=0.162 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHhcCCCCcc----HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 043950 39 LQLEATTQFRILLSIERSPR----IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIF 114 (458)
Q Consensus 39 ~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L 114 (458)
-...++.+|.|+.+.. ++- ..+..--|.++.+..++.....+.++.-|+.++..+.. +.++...+++.|.+..|
T Consensus 1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 5567899999998875 222 12223347788888888766558899999999988777 78999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC---CCCChhhh
Q 043950 115 VKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK---PQPPFDQV 191 (458)
Q Consensus 115 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~ 191 (458)
+.+|.+. |..|+.++.+|..++.... ......+.|++..+...+-...++..+..+...+..+...+ |......+
T Consensus 1819 L~lLHS~-PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHSQ-PSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHHhcC-hHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 9999764 6678889999999976654 44556678999999988878888899999999999998776 33333322
Q ss_pred hhhHHHHHH-----------hhc--CCChHH------HHHHHHHHHHhccC-------Ch-------h------------
Q 043950 192 RPALPALAQ-----------LIH--LDDEEV------LSDACWTLSYLSYG-------TN-------D------------ 226 (458)
Q Consensus 192 ~~~l~~l~~-----------ll~--~~~~~~------~~~~~~~l~~l~~~-------~~-------~------------ 226 (458)
..+-..++. .+. +++++. +...-..+..++.. ++ +
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence 222222333 332 122221 22222222222210 00 0
Q ss_pred ------hHHHHHH------------hCcHHHHHHHhCCCCcc--chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh
Q 043950 227 ------KIQVVIE------------AGVCRRLVELLGHPSPS--VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 286 (458)
Q Consensus 227 ------~~~~~~~------------~~~i~~L~~ll~~~~~~--~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 286 (458)
....+.+ .++++.+..++..++++ ....-..++-.|.+..+...+.+-..|.+|.++..+
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence 0000111 13566666666665433 233334445556667777777777889999999999
Q ss_pred ccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChH
Q 043950 287 IHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIK 366 (458)
Q Consensus 287 ~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~ 366 (458)
... +..+-..|..+|-.++.. .-....+.....+..++..+... .....-|+.+|..+......+........|.++
T Consensus 2057 ~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVP 2133 (2235)
T ss_pred Hhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHH
Confidence 877 666778899999988753 35666677666677777777654 444558899999998866666666778899999
Q ss_pred HHHhhccC
Q 043950 367 PLCDLLLC 374 (458)
Q Consensus 367 ~L~~ll~~ 374 (458)
.|..+++.
T Consensus 2134 yLL~LLd~ 2141 (2235)
T KOG1789|consen 2134 YLLQLLDS 2141 (2235)
T ss_pred HHHHHhcc
Confidence 99999984
No 74
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.83 E-value=4.8e-06 Score=80.86 Aligned_cols=356 Identities=13% Similarity=0.094 Sum_probs=224.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950 27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI 106 (458)
Q Consensus 27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 106 (458)
.+++.+.+.|-+.|+.|..-|.+=+..+ .-..+.=-+..++..++++|.+.+ .++|..|++|++-++..-++.+-.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le-- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLE-- 84 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHH--
Confidence 6788889999999999988776554433 222222223457899999999999 899999999999998744333322
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc----c-cccHHHHHHHHHHHHHhhc
Q 043950 107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN----E-HAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~----~-~~~~~~~~~a~~~l~~l~~ 181 (458)
..+..|+.-+-++....|....-.|.....+-+..........+.+.+...+. . .....++-.++..+.-+..
T Consensus 85 --~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 85 --TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred --HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 22455666544555555555544444433332222222233334444544443 2 2233366666666665555
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHh
Q 043950 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVG 260 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~ 260 (458)
.....-..+...++..+..-+.++-..++..++.+++.++...+.. .-.+++..+.+-|..+ +....+.-..+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 4433333355677777888888888999999999999998544321 1123556666666553 4445555677777
Q ss_pred HhhcCChhhHHHHHhcCChHHHHHHh---ccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc------
Q 043950 261 NIVMGDDFQTQCIINHGAVPCLLALL---IHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD------ 331 (458)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~~~~l~~ll---~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~------ 331 (458)
.+++........- -..+++.+.+.. +.. +.+.|+....++..+....|..+...+. .++..+++.+..
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 7776443222211 135788888888 666 7889999999999988766655543332 133333333310
Q ss_pred -------------------------C---ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHH
Q 043950 332 -------------------------A---EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVC 383 (458)
Q Consensus 332 -------------------------~---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~ 383 (458)
+ +.+||.+|+.++..+... ..+....+.+ ..-+.++.-++..++.|+.-.
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence 0 246899999999999874 4455555444 345678888888888898888
Q ss_pred HHHHHHHHHhchhh
Q 043950 384 LEGLENILKVGEAE 397 (458)
Q Consensus 384 ~~~l~~l~~~~~~~ 397 (458)
+.++..++..-...
T Consensus 394 f~~yi~ll~qt~~~ 407 (1233)
T KOG1824|consen 394 FHAYIALLKQTRPV 407 (1233)
T ss_pred HHHHHHHHHcCCCC
Confidence 88888887755443
No 75
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.81 E-value=1.2e-05 Score=76.29 Aligned_cols=386 Identities=14% Similarity=0.119 Sum_probs=225.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-------CCCHHHHHHHHHHHHHHcCC
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-------EDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~~i~~~a~~~L~~l~~~ 97 (458)
+-.+.+-..++|.+.....+..+.+++..++ .........++|.++...-. .+...+...+..+-..+..
T Consensus 638 mlil~rEf~sPDeemkkivLKVv~qcc~t~G--v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~- 714 (1172)
T KOG0213|consen 638 MLILIREFGSPDEEMKKIVLKVVKQCCATDG--VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS- 714 (1172)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHhcccC--CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc-
Confidence 3445555667888888878888877766532 22233444566666554422 1222233333322222222
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch-hhHHhhhCCHHHHHHHhcccc-cHHHHHHHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC-RNLVLREEALIPLLAQLNEHA-KLSMLRIATWT 175 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~l~~~l~~~~-~~~~~~~a~~~ 175 (458)
...+..++.=+++.++..|..++.+..++...-+.. -+.-.+...+..++..+.... +..+.-.+..+
T Consensus 715 ----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 715 ----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred ----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence 123555566667778888887777777665432210 011122334555665554322 23344445555
Q ss_pred HHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhh--HHHHHHhCcHHHHHHHhCCCCccchh
Q 043950 176 LSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDK--IQVVIEAGVCRRLVELLGHPSPSVLT 253 (458)
Q Consensus 176 l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~ 253 (458)
+.+-.. .+.+.....++..+...|++..+.++..++..++.++..-... .+.+-..| -.|.+.|....+++.-
T Consensus 785 V~~~lg---~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLg 859 (1172)
T KOG0213|consen 785 VVNALG---GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLG 859 (1172)
T ss_pred HHHHHh---hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHH
Confidence 444322 2334455778888899999999999999999988887321111 12233333 3567778888888887
Q ss_pred hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH--HHHHHcCChHHHHHHhcc
Q 043950 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI--QAVIDAGLIVPLVNVLQD 331 (458)
Q Consensus 254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~--~~l~~~~~~~~L~~ll~~ 331 (458)
..+.++..+.....-....-=-.+++|.|..+|++. ..+|+.++...++.++...++.+ ...+. +---|+++|..
T Consensus 860 sILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLka 936 (1172)
T KOG0213|consen 860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKA 936 (1172)
T ss_pred HHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHH
Confidence 777777666542211100000247899999999999 99999999999999996443321 11111 22347788888
Q ss_pred CChhhHHHHHHHHHHhhcCCCH-HHHHHHH----------------------H-CC---ChHHHHhhccCCCHHHHHHHH
Q 043950 332 AEFDIKKEAALAIANATVRGTH-EQIKYLV----------------------R-EG---CIKPLCDLLLCVDPKIVTVCL 384 (458)
Q Consensus 332 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~l~----------------------~-~~---~l~~L~~ll~~~~~~v~~~~~ 384 (458)
.+.++|.+|...++.++..-.+ +....++ + .| +++.|.+=-..++-.|+...+
T Consensus 937 hkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVL 1016 (1172)
T KOG0213|consen 937 HKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVL 1016 (1172)
T ss_pred HHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHH
Confidence 8899999999999999864322 2221111 1 11 345555544567788999999
Q ss_pred HHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 385 EGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 385 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
++++-+|++-.+..+ .|.-.+ ...|.+-+.+.+.--++.|..++.++
T Consensus 1017 kalsf~Feyigemsk---------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1017 KALSFMFEYIGEMSK---------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHHHHHHHHHHHhh---------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence 999999988666432 223222 34445555555555555565555544
No 76
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=3.7e-06 Score=82.49 Aligned_cols=387 Identities=13% Similarity=0.095 Sum_probs=244.9
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 21 KLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 21 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
+.+.-|..-++.+...+.++..++.-+.+++..- ..+....++++.+.++..+.. ..+++.|...+.++..-...
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~ 309 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDD 309 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCC
Confidence 3344455555666777999999999999887653 226677789999999999988 69999999888887662111
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc--------------------h-h---------------
Q 043950 101 NTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG--------------------C-R--------------- 144 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--------------------~-~--------------- 144 (458)
.. -....+.+.+++...+++..++..+......+...-.. - +
T Consensus 310 ~~--d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~ 387 (759)
T KOG0211|consen 310 DD--DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLN 387 (759)
T ss_pred ch--hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcC
Confidence 11 11223467777777777777776665555444421000 0 0
Q ss_pred ----hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950 145 ----NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 145 ----~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 220 (458)
..+.....++.+-.+. .+.++.++...+.....+.-. ......+....|.....++..++.++....+.+..+
T Consensus 388 ~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~--~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 388 ASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPI--LPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred cccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCcc--CCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 0000111112111111 333333333333333332211 112233466778888888899999999998777655
Q ss_pred ccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHH
Q 043950 221 SYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACW 300 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~ 300 (458)
-...+..-........++.+..+-....+.++....+.+..++.... ..+++...-+.+...+.+. ...++..|+.
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~ 540 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAAR 540 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHH
Confidence 43333222224455678888888887788899999998888875332 3344444566666667666 7789999998
Q ss_pred HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH
Q 043950 301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV 380 (458)
Q Consensus 301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 380 (458)
.+.-++.... ........++.++.....++...|...+.++..++...+.+ +..+.+++.+..+..++.++|+
T Consensus 541 ~l~~l~~~~G---~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~vanVR 613 (759)
T KOG0211|consen 541 NLPALVETFG---SEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVANVR 613 (759)
T ss_pred HhHHHHHHhC---cchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCchhhh
Confidence 8888875211 11112236777777777767888988888888776543322 3445578899999999999999
Q ss_pred HHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHH
Q 043950 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444 (458)
Q Consensus 381 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 444 (458)
.++++.+..+........ .+......++.|..+++.+++.+|......
T Consensus 614 ~nvak~L~~i~~~L~~~~----------------~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 614 INVAKHLPKILKLLDESV----------------RDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred hhHHHHHHHHHhhcchHH----------------HHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 999999999988755432 233345666777778888887766655543
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.3e-05 Score=76.53 Aligned_cols=288 Identities=17% Similarity=0.152 Sum_probs=173.8
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC
Q 043950 73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEA 152 (458)
Q Consensus 73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 152 (458)
+...+.. +-+|..|+.++-.+-.-.++....+ +..+-.+|.+.++.+.-.|+.++-.+|-+.- +.+ .+-
T Consensus 150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkn 218 (968)
T KOG1060|consen 150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKN 218 (968)
T ss_pred HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHH
Confidence 3345666 8999999999999988777777644 5777888999999999999999988875431 111 123
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCC-CCC----------------------------ChhhhhhhHHHHHHhhc
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQP----------------------------PFDQVRPALPALAQLIH 203 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~----------------------------~~~~~~~~l~~l~~ll~ 203 (458)
...+.+.+. +-+.=-+...+.+|...++.. +.. ...-..-++.....++.
T Consensus 219 yrklC~ll~-dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~ 297 (968)
T KOG1060|consen 219 YRKLCRLLP-DVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ 297 (968)
T ss_pred HHHHHhhcc-chhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence 445555552 222112233334444444332 111 01112345566677888
Q ss_pred CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH---------
Q 043950 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII--------- 274 (458)
Q Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--------- 274 (458)
+.++.+...++.+++.++.... . .++++.|+++|.++ ..++...+..+..++...+......+
T Consensus 298 S~n~sVVmA~aql~y~lAP~~~--~-----~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssD 369 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKNQ--V-----TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSD 369 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHHH--H-----HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCC
Confidence 9999999999999999984331 1 24578888877654 34566666666666543322221111
Q ss_pred ----------------hc----CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCCh
Q 043950 275 ----------------NH----GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEF 334 (458)
Q Consensus 275 ----------------~~----~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 334 (458)
+. .+++.+...+.+. +..+...|..+|+.++...... ....+.-|+.++.+.+.
T Consensus 370 p~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde 443 (968)
T KOG1060|consen 370 PTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDE 443 (968)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccc
Confidence 11 1344444555556 5567778888888887532221 12356678889999899
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC-HHHHHHHHHHHHHHHH
Q 043950 335 DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD-PKIVTVCLEGLENILK 392 (458)
Q Consensus 335 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~v~~~~~~~l~~l~~ 392 (458)
.|..+++..+..+......+..+. +..|.++++.-. +.-+...+|.++.++.
T Consensus 444 ~Vv~eaV~vIk~Llq~~p~~h~~i------i~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQKDPAEHLEI------LFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred hhHHHHHHHHHHHHhhChHHHHHH------HHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 999999999999987655444333 344555554321 2233334454444443
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=7.1e-06 Score=76.55 Aligned_cols=329 Identities=16% Similarity=0.168 Sum_probs=213.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.+..+++-+..+.+++|.....++..+......... ..+.+.+.+++.... ..-+..+.+.+..+..+ ....
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g--~~i~ 168 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNG--LGIE 168 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcC--cHHh
Confidence 466777788888899999999888877543212222 235677888888766 68888899998888874 3445
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHH-HHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVRE-QAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
.+.+.+++..+.....+.....++ .+..++...+..- +.....+. ..++.++... .+..+.++..+..+...+-+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence 556678889999988875443333 3433333333221 11111121 2455555555 56677888888777776655
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
.- ....+.-++|.++.-+....+.....++..++.++...+.+.. ..-..++|.+.+.|.+..++++..+..++.+
T Consensus 246 ~~---~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~ 321 (569)
T KOG1242|consen 246 CL---SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK 321 (569)
T ss_pred hc---CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence 42 1223355566655555555788889999999999877776655 4556799999999999999999999999888
Q ss_pred hhcCCh-hhHHHHH------------------------------hcCChHHHHHHh----ccCChhhHHHHHHHHHHHhh
Q 043950 262 IVMGDD-FQTQCII------------------------------NHGAVPCLLALL----IHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 262 l~~~~~-~~~~~~~------------------------------~~~~~~~l~~ll----~~~~~~~v~~~a~~~l~nl~ 306 (458)
++..-+ ..++.++ +..-+..++.++ ... +...++.++.++.|++
T Consensus 322 ~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-st~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 322 FGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-STSIKRKTAIIIDNMC 400 (569)
T ss_pred HHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc-cchhhhhHHHHHHHHH
Confidence 865211 0111111 111233333333 333 5678899999999999
Q ss_pred c--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC
Q 043950 307 A--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374 (458)
Q Consensus 307 ~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 374 (458)
. .++..+..++. .++|-+-..+.+..+++|..+..+|+.+.+.-... .+ .+.++.+.+.+..
T Consensus 401 ~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f--~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SF--DDLIPELSETLTS 464 (569)
T ss_pred HhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cc--cccccHHHHhhcc
Confidence 7 34555544443 26777777777778999999999999998642211 11 4556666666643
No 79
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.79 E-value=4.8e-07 Score=80.89 Aligned_cols=271 Identities=16% Similarity=0.144 Sum_probs=185.1
Q ss_pred HHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 043950 60 EDVIQAGVVPRFVEFLMREDY-PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVA 137 (458)
Q Consensus 60 ~~~~~~~~i~~L~~ll~~~~~-~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~ 137 (458)
+.+...|++..|++++..++. ..++.+|.+.|..+.. .++++.++..| +..++.+-+. ..++.++..+.+|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 445567899999999999873 2469999999999887 67888888877 6666666554 56788999999999999
Q ss_pred cCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-CCCChhhh-hhhHHHHHHhhcCCChHHHHHHHH
Q 043950 138 ADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFDQV-RPALPALAQLIHLDDEEVLSDACW 215 (458)
Q Consensus 138 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~ 215 (458)
.++.+....++..|+++.++-.+ ...+|.+.+++..+|.|+..+. ......++ ...-+-+..+-.+.|.-.+..+|-
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 88877777788999999998888 6777999999999999998775 22333333 344444666666778888999999
Q ss_pred HHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHH
Q 043950 216 TLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIK 295 (458)
Q Consensus 216 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~ 295 (458)
+++.++.... ....+..+|-+..+-.++.+-++. .+++...+..+ --....++.|+.+|++. ..+.+
T Consensus 330 AV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~----------~FARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EAq 396 (832)
T KOG3678|consen 330 AVAVLATNKE-VEREVRKSGTLALVEPLVASLDPG----------RFARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEAQ 396 (832)
T ss_pred HHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcc----------hhhhhhhhhhc-cCChHHHHHhhhhhhcc-hhhhh
Confidence 9999985544 344456666665555555554431 12221111111 11234688899999877 66666
Q ss_pred HHHHHHHHHhhc-CC-HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 296 KVACWTISNITA-GN-REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 296 ~~a~~~l~nl~~-~~-~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
..+++-++.=+. .+ ....+.+.+-|.+..|-++.++.|.--.+.|-.+|.-+
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 555555544332 11 11223445678999999998877655445555555544
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=98.72 E-value=4.5e-05 Score=73.55 Aligned_cols=382 Identities=15% Similarity=0.089 Sum_probs=229.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCC--ccHHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERS--PRIEDVIQAGVVPRFVEFLMRED------YPQLQYEAAWALTNI 94 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~i~~L~~ll~~~~------~~~i~~~a~~~L~~l 94 (458)
..+...+++|++.+-+-++.++..+.+++...+. ...+.+.++-+.+.|-++|.+.. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4577889999998888889999999999776421 12345778877888889997722 246778899999999
Q ss_pred cCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 95 ASGTSMNTNVVIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
+. .++....---.+-||.|+..+.+.+. .+..-|+.+|..++ ..+..++.+.+.|.++.+...+.+ .+.....+.
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 98 45543211112568999999987666 89999999999999 555667888899999999999954 445678888
Q ss_pred HHHHHhhcCCCC----CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhh-HHHH----HHhCcHHHHHHHh
Q 043950 174 WTLSKLCKGKPQ----PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDK-IQVV----IEAGVCRRLVELL 244 (458)
Q Consensus 174 ~~l~~l~~~~~~----~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~----~~~~~i~~L~~ll 244 (458)
.++.+++..... ........+++.+...+.......+-.++..+..+....+.. .... .-..+...+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 888887765431 122233566677777777777777778888888887555311 1111 1123445555666
Q ss_pred CC-CCccchhhHHHHHhHhhcCChhhHHHHH-hc-----CChHHHHHH---------------hccCChh----------
Q 043950 245 GH-PSPSVLTPALWTVGNIVMGDDFQTQCII-NH-----GAVPCLLAL---------------LIHNHKK---------- 292 (458)
Q Consensus 245 ~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~-----~~~~~l~~l---------------l~~~~~~---------- 292 (458)
.+ ..+.-|..++...+.+..... .+-++ +. .++-.++++ .+.+...
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf 318 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF 318 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence 55 345566667666666653211 01111 11 111112211 1111001
Q ss_pred hHHHHHHHHHHHhhc-----CCHHHHHHHHH--cCChHHHHHHhccC------ChhhHHHHHHHHHHhhcCCCHHHHHHH
Q 043950 293 SIKKVACWTISNITA-----GNREQIQAVID--AGLIVPLVNVLQDA------EFDIKKEAALAIANATVRGTHEQIKYL 359 (458)
Q Consensus 293 ~v~~~a~~~l~nl~~-----~~~~~~~~l~~--~~~~~~L~~ll~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~l 359 (458)
.+-+.....+.+-.. -.++...++.. .+.+...+.+|... ++.....++++|+......+....+.+
T Consensus 319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v 398 (543)
T PF05536_consen 319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV 398 (543)
T ss_pred HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 111112222222111 12334444432 34555666666432 333667788889888775544444443
Q ss_pred HHCCChHHHHhhccCCCH----------HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh
Q 043950 360 VREGCIKPLCDLLLCVDP----------KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL 426 (458)
Q Consensus 360 ~~~~~l~~L~~ll~~~~~----------~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 426 (458)
.+.++.++.+.+.... +.+...+=+|..+.... ..+..+...||.+.+.+.
T Consensus 399 --~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~--------------~gr~~l~~~~g~~~l~~~ 459 (543)
T PF05536_consen 399 --YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEE--------------EGRKILLSNGGWKLLCDD 459 (543)
T ss_pred --HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccH--------------HHHHHHHhCCcHHHHHHH
Confidence 3688888888764322 23444455555554322 237777778887776643
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=3.5e-05 Score=75.95 Aligned_cols=307 Identities=13% Similarity=0.184 Sum_probs=203.1
Q ss_pred hhHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950 18 LQTKLEILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 96 (458)
..+.+|.++-+...+. ..++.++.-++..+..+... .++...+...+++..|+.+|.+. |..|..++.+|..+++
T Consensus 1766 e~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S 1841 (2235)
T KOG1789|consen 1766 EILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYALSS 1841 (2235)
T ss_pred hhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhc
Confidence 3556677888887777 46789999999998887665 78999999999999999999765 5889999999999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCC---CchhhHHhh----------hCCHHHHHHHhcc
Q 043950 97 GTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADS---PGCRNLVLR----------EEALIPLLAQLNE 162 (458)
Q Consensus 97 ~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~l~~l~~~l~~ 162 (458)
+++....-.+.|++..+..++- +.++..|.+++..++.+..+. |..+-.++. .+.....+..+..
T Consensus 1842 -~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~ 1920 (2235)
T KOG1789|consen 1842 -NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFES 1920 (2235)
T ss_pred -CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhc
Confidence 6777777778888877777654 577899999999999997543 222111111 0011222222211
Q ss_pred -cccH------HHHHHHHHHHHHhh----cCC---C--------------------------------------CCChhh
Q 043950 163 -HAKL------SMLRIATWTLSKLC----KGK---P--------------------------------------QPPFDQ 190 (458)
Q Consensus 163 -~~~~------~~~~~a~~~l~~l~----~~~---~--------------------------------------~~~~~~ 190 (458)
+.+| ..+......+..+. ++. + .....+
T Consensus 1921 T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~F 2000 (2235)
T KOG1789|consen 1921 TSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLF 2000 (2235)
T ss_pred cCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHH
Confidence 1111 12222222222211 110 0 111223
Q ss_pred hhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh
Q 043950 191 VRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF 268 (458)
Q Consensus 191 ~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 268 (458)
..+++..+.+++..++ .........++..+....+...+.+-..|.+|.++..+...+..+-..|+++|..|+. +..
T Consensus 2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~ 2079 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQF 2079 (2235)
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccH
Confidence 3455666666666443 2233333334444444555555656667999999999999888888999999999986 555
Q ss_pred hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccC
Q 043950 269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDA 332 (458)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~ 332 (458)
+.+.+.....+..+++.+... ....--|+.+|..+.. ...+......+.|.+|.|+.+|...
T Consensus 2080 C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2080 CCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 666676667777788888765 2334477888888775 3445556667899999999999754
No 82
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=9.9e-06 Score=68.88 Aligned_cols=274 Identities=14% Similarity=0.167 Sum_probs=174.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
...+++++.+.+|.++..|+..+..+... .-....-.+...++.+.+++.... + ...|+.++.|++. ....++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHHHH
Confidence 45788999999999999999998888554 111111123356888999998887 4 6789999999999 6788888
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhh-----CCHHHHHHHhcc-ccc-HHHHHHHHHHHH
Q 043950 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLRE-----EALIPLLAQLNE-HAK-LSMLRIATWTLS 177 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~l~~~l~~-~~~-~~~~~~a~~~l~ 177 (458)
+++. .+..+...+.++...+....+..|.|++.+...+....... .++..++...-+ +.+ ..-..+...++.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8776 77778888877766777888899999998877665543322 234444444322 222 123455667778
Q ss_pred HhhcCCCCCChhhhhhhH--HHHHHhhcCCChHHHH-HHHHHHHHhccCChhhHHHHHHh--CcHHHHH-----------
Q 043950 178 KLCKGKPQPPFDQVRPAL--PALAQLIHLDDEEVLS-DACWTLSYLSYGTNDKIQVVIEA--GVCRRLV----------- 241 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l--~~l~~ll~~~~~~~~~-~~~~~l~~l~~~~~~~~~~~~~~--~~i~~L~----------- 241 (458)
++++....+........+ +.+..+-. .+..++. ..+.+|.|+|-... ....+++. .+++.+.
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 887765333332222222 23444444 5666654 46778888774433 22223322 2233322
Q ss_pred ----------HHhC-----CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 242 ----------ELLG-----HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 242 ----------~ll~-----~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
+.+. .+++.++..-+.+|.-||. ....++.+.+.|+.+.+-.+-+...+++++..+-.....+.
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1121 1345788888999988887 44556777888888888888777757777766555555555
Q ss_pred cC
Q 043950 307 AG 308 (458)
Q Consensus 307 ~~ 308 (458)
..
T Consensus 315 ~~ 316 (353)
T KOG2973|consen 315 RL 316 (353)
T ss_pred hc
Confidence 43
No 83
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.67 E-value=2.2e-05 Score=76.46 Aligned_cols=318 Identities=18% Similarity=0.172 Sum_probs=178.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----------CCccHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIE----------RSPRIEDVIQAGVVPRFVEFLMR-EDYPQLQYEAAWALTN 93 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~----------~~~~~~~~~~~~~i~~L~~ll~~-~~~~~i~~~a~~~L~~ 93 (458)
.|.++.....+.+.+..+|+.....+..-- .++....+ +...++.|.. ..++++++.|+.+++.
T Consensus 522 s~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m-----~~~tl~rL~a~d~DqeVkeraIscmgq 596 (1233)
T KOG1824|consen 522 SPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTM-----YDCTLQRLKATDSDQEVKERAISCMGQ 596 (1233)
T ss_pred hhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 455556666777778888877777664321 11112222 2223334433 2348999999999999
Q ss_pred HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHH
Q 043950 94 IASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIAT 173 (458)
Q Consensus 94 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~ 173 (458)
+.....+...... ...++.++.-+ +++-.|-.|+.++..++...-.....-.-..+++.+...+.... ...+...+
T Consensus 597 ~i~~fgD~l~~eL-~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~-r~lr~~~l 672 (1233)
T KOG1824|consen 597 IIANFGDFLGNEL-PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ-RALRLATL 672 (1233)
T ss_pred HHHHHhhhhhhhh-HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 8763222211111 13355555555 56667788999999988654332211112235666777764322 23444445
Q ss_pred HHHHHhhcCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc---
Q 043950 174 WTLSKLCKGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP--- 249 (458)
Q Consensus 174 ~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--- 249 (458)
.++..|..+. ..........++..+..++...|-.+-..++.++..+....+... .-+...+++.++.+++++--
T Consensus 673 ~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~Spllqg~ 751 (1233)
T KOG1824|consen 673 TALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRSPLLQGG 751 (1233)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhCccccch
Confidence 5555555443 344555667777778888888888888888888877775554322 12233345555555543310
Q ss_pred ---------------------------------------cchhhHHH----HHhHhhcCChhhHHHHHhcCChHHHH-HH
Q 043950 250 ---------------------------------------SVLTPALW----TVGNIVMGDDFQTQCIINHGAVPCLL-AL 285 (458)
Q Consensus 250 ---------------------------------------~~~~~a~~----~l~~l~~~~~~~~~~~~~~~~~~~l~-~l 285 (458)
.+.+.|.. +.+.++...++... .....++ ++
T Consensus 752 al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~-----s~a~kl~~~~ 826 (1233)
T KOG1824|consen 752 ALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK-----SLATKLIQDL 826 (1233)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHH
Confidence 11122222 22222222221111 1223333 33
Q ss_pred hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950 286 LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361 (458)
Q Consensus 286 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~ 361 (458)
.+...+..++..|...++.+-.+....- ..++...+++.+++++.+++..|.+||++++.+.-+.+..++.+
T Consensus 827 ~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~ 898 (1233)
T KOG1824|consen 827 QSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILE 898 (1233)
T ss_pred hCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHH
Confidence 3334366788899999999987421110 12345577888899999999999999999998776666665544
No 84
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=4.7e-05 Score=64.91 Aligned_cols=272 Identities=15% Similarity=0.145 Sum_probs=177.0
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI 232 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 232 (458)
+..++.++ .+.+|.++..|..-+..++......-.......++.+.+++...++ .+.+..++.|++.... ..+.++
T Consensus 5 l~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLL 80 (353)
T ss_pred HHHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHH
Confidence 34567777 8889999999998888888762111222235677888899988777 7889999999986544 444455
Q ss_pred HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH--h----cCChHHHHHHhccCChhhH-HHHHHHHHHHh
Q 043950 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII--N----HGAVPCLLALLIHNHKKSI-KKVACWTISNI 305 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~--~----~~~~~~l~~ll~~~~~~~v-~~~a~~~l~nl 305 (458)
+. ++..++..+.++........+..++|+++..+.....+. . .++++.......++.+... -...+.+++|+
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 55 888899999988888999999999999987665543333 2 4566666666665533111 23456677777
Q ss_pred hcCCHHHHHHHHHcCChH--HHHHHhccCChhhH-HHHHHHHHHhhcCCCHHHHHHHHHC--CChHHH------------
Q 043950 306 TAGNREQIQAVIDAGLIV--PLVNVLQDAEFDIK-KEAALAIANATVRGTHEQIKYLVRE--GCIKPL------------ 368 (458)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~--~L~~ll~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~l~~~--~~l~~L------------ 368 (458)
... +..+..+.+...++ .+.. +.+.+..+| ...+..|.|++... .....++.. ++++.|
T Consensus 160 s~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sE 235 (353)
T KOG2973|consen 160 SQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSE 235 (353)
T ss_pred hhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCH
Confidence 653 34455555433222 2222 233445554 45577788877643 222222221 111111
Q ss_pred ---------Hhhcc-----CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh-hcCCChH
Q 043950 369 ---------CDLLL-----CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL-KSHDNNG 433 (458)
Q Consensus 369 ---------~~ll~-----~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~ 433 (458)
..++. .+++.+++..+.+|..++.-.. .++.++.-|+...+..+ .+-++++
T Consensus 236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~--------------GRe~lR~kgvYpilRElhk~e~ded 301 (353)
T KOG2973|consen 236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA--------------GREVLRSKGVYPILRELHKWEEDED 301 (353)
T ss_pred HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH--------------hHHHHHhcCchHHHHHHhcCCCcHH
Confidence 12232 3578899999999988875333 38899999999999988 5668899
Q ss_pred HHHHHHHHHHHhcC
Q 043950 434 IREKAVKILETYWC 447 (458)
Q Consensus 434 v~~~a~~~l~~~~~ 447 (458)
+.+.+.++.+-...
T Consensus 302 ~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 302 IREACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHHHh
Confidence 98888887766555
No 85
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.64 E-value=1.2e-06 Score=64.72 Aligned_cols=153 Identities=8% Similarity=0.010 Sum_probs=123.0
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHH
Q 043950 279 VPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKY 358 (458)
Q Consensus 279 ~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 358 (458)
+..|+.-.....+.+.++....-|+|++.+ |-+...+.+.+++..+++.+..++..+++.++.+|||+|. ++...+.
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~~ 94 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAKF 94 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHHH
Confidence 444555555554778899999999999864 4677888899999999999999999999999999999998 6678899
Q ss_pred HHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHH
Q 043950 359 LVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKA 438 (458)
Q Consensus 359 l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a 438 (458)
+.+.++++.++..+.++...++..++..+..+...+.. .+..+-....++.++....+.+.+.+..|
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt-------------~r~ell~p~Vv~~v~r~~~s~s~~~rnLa 161 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT-------------ERDELLSPAVVRTVQRWRESKSHDERNLA 161 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc-------------hhHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999998888888777766554433 35555566667888877777777788888
Q ss_pred HHHHHHhcC
Q 043950 439 VKILETYWC 447 (458)
Q Consensus 439 ~~~l~~~~~ 447 (458)
...++.+..
T Consensus 162 ~~fl~~~~~ 170 (173)
T KOG4646|consen 162 SAFLDKHVH 170 (173)
T ss_pred HHHHHhhcc
Confidence 888877654
No 86
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.5e-05 Score=67.08 Aligned_cols=304 Identities=13% Similarity=0.114 Sum_probs=205.1
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHH--HHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRF--VEFLMREDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L--~~ll~~~~~~~i~~~a~~~L~~l~~~ 97 (458)
.+.+.++.++.++-.+|.++-..|...+.+++.. +.....+.+.+....+ ..+-...+ .-.|......+..+.+-
T Consensus 125 vNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSi 201 (524)
T KOG4413|consen 125 VNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSI 201 (524)
T ss_pred hhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhc
Confidence 3567788999999999999999999999999776 5677777776665433 33434444 46788888899999988
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-cccHHHHHHHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-HAKLSMLRIATWT 175 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~ 175 (458)
+++.....-.+|.+..|..-++. .+.-++.+++.....++... ..++.+.+.|.++.+...+.. +.+|.-...++-.
T Consensus 202 SpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmg 280 (524)
T KOG4413|consen 202 SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMG 280 (524)
T ss_pred CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH
Confidence 89999999999999999988876 67778888888888887543 346778888888888888742 3344433334444
Q ss_pred HHHhhcCCC------CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc--HHHHHHHhCCC
Q 043950 176 LSKLCKGKP------QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV--CRRLVELLGHP 247 (458)
Q Consensus 176 l~~l~~~~~------~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~--i~~L~~ll~~~ 247 (458)
...+..+.. ..........+....+++..+|++.++.++.+++.+-++.. ..+.+...|- .+.++.-..+.
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte-GadlllkTgppaaehllarafdq 359 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE-GADLLLKTGPPAAEHLLARAFDQ 359 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc-hhHHHhccCChHHHHHHHHHhcc
Confidence 444443321 11112223444556677888999999999999998875443 4454555442 33344333333
Q ss_pred C-ccchhhHHHHHhHhhcCC---hhh----------HHHHHh-------cCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 248 S-PSVLTPALWTVGNIVMGD---DFQ----------TQCIIN-------HGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 248 ~-~~~~~~a~~~l~~l~~~~---~~~----------~~~~~~-------~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
+ ..-+..++++|.+++..- +++ +..+++ ..-...+..+++.+ .++++-.+..++..++
T Consensus 360 nahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAia 438 (524)
T KOG4413|consen 360 NAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIA 438 (524)
T ss_pred cccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHH
Confidence 3 334566788888876431 111 111111 13355667778877 8899999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHHHh
Q 043950 307 AGNREQIQAVIDAGLIVPLVNVL 329 (458)
Q Consensus 307 ~~~~~~~~~l~~~~~~~~L~~ll 329 (458)
.........+.+.+++..+.+.-
T Consensus 439 aqPWalkeifakeefieiVtDas 461 (524)
T KOG4413|consen 439 AQPWALKEIFAKEEFIEIVTDAS 461 (524)
T ss_pred cCcHHHHHHhcCccceeeecccc
Confidence 77666555555677777666543
No 87
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.62 E-value=5.9e-06 Score=76.62 Aligned_cols=336 Identities=14% Similarity=0.116 Sum_probs=202.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC-CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIER-SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
.+..+++.|++..+.++.+|+.....++.--+ -.....+...| ..|.+-|.... |++.-..+.+++.+... -..+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv-~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSV-HRFR 680 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhh-hccc
Confidence 35667788999999999999887776642210 01122233333 34566666666 88887777777666552 1221
Q ss_pred H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch---hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 103 N-VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC---RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 103 ~-~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
. .---.|++|.|...|.+...++..+.+..++.+|...|+. |+.+. +--.|+..| .+.+.+++++|..++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~L-ks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSL-KSWNKEIRRNATETFGC 756 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHH-HHhhHHHHHhhhhhhhh
Confidence 1 1112488999999999999999999999999999887763 22221 334566667 67788999999999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
+++.- --+.++..|+.-|+..+...+....-+++-.+.... -..++|.|+.=-.+++..++.-.+.+
T Consensus 757 Is~ai------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvLka 823 (975)
T COG5181 757 ISRAI------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVLKA 823 (975)
T ss_pred HHhhc------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHHHH
Confidence 88653 125667777777776655544443334433332211 11345555555556777788877777
Q ss_pred HhHhhcCChhhH-HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH--HHHHHHcCChHHHHHHhccCChh
Q 043950 259 VGNIVMGDDFQT-QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ--IQAVIDAGLIVPLVNVLQDAEFD 335 (458)
Q Consensus 259 l~~l~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~--~~~l~~~~~~~~L~~ll~~~~~~ 335 (458)
++.+...-.+.. +.+ ..+.|.+-+.|.+. |+.-|..|...+..++.+.+.. .+..+. .+..|..-+-.+.+.
T Consensus 824 m~fmFeyig~~s~dYv--y~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPh 898 (975)
T COG5181 824 MCFMFEYIGQASLDYV--YSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPH 898 (975)
T ss_pred HHHHHHHHHHHHHHHH--HHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcH
Confidence 776654332221 222 24677788888888 9989999999999998643221 111111 122222223345666
Q ss_pred hHHHHHHHHHHhhcC-CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 336 IKKEAALAIANATVR-GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
+......++-.+... +... .+..+..-|-++...|++. .|...+++....
T Consensus 899 vi~~~~Eg~e~~~~~lg~g~---------~m~Yv~qGLFHPs~~VRk~-ywtvyn~myv~~ 949 (975)
T COG5181 899 VIQSFDEGMESFATVLGSGA---------MMKYVQQGLFHPSSTVRKR-YWTVYNIMYVFD 949 (975)
T ss_pred HHHHHHHHHHHHHHHhccHH---------HHHHHHHhccCchHHHHHH-HHHHHhhhhhcc
Confidence 655444444333221 1112 2444556667788877654 666666665443
No 88
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=3.6e-07 Score=83.02 Aligned_cols=305 Identities=12% Similarity=0.097 Sum_probs=192.2
Q ss_pred HHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCC
Q 043950 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDD 206 (458)
Q Consensus 128 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~ 206 (458)
.++.+|..+++.-...|.-+.+..+.+.|++.+ .+++..+..-+...++|+.-...+. ......+++..++.++.+.|
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 345556666665555666677778889999999 6666556666677777776654333 33444889999999999999
Q ss_pred hHHHHHHHHHHHHhccCChhh--HHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh---hHHHHHhc----C
Q 043950 207 EEVLSDACWTLSYLSYGTNDK--IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF---QTQCIINH----G 277 (458)
Q Consensus 207 ~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~----~ 277 (458)
...+....|.+..+..+.+.. .+ ++..-++..++.+..++...++..++.++.|+.+.... .....++. -
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~-~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFK-FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhh-hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 999999999999998655433 34 44556789999999999999999999999999874332 12222211 2
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHHHhccC-----------ChhhHHHHHHHHH
Q 043950 278 AVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVNVLQDA-----------EFDIKKEAALAIA 345 (458)
Q Consensus 278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~ll~~~-----------~~~~~~~a~~~L~ 345 (458)
+.+.+++.++.. +|-.-...++.|.+++..+.+..+.+.+ ..++..+...+... ...+-........
T Consensus 566 lfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v 644 (743)
T COG5369 566 LFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV 644 (743)
T ss_pred HHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence 567778888877 7766777799999998755333333332 23343333333211 1111111222233
Q ss_pred HhhcCCCHHHHHHHHHCCCh--HHHHhhc---cCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH
Q 043950 346 NATVRGTHEQIKYLVREGCI--KPLCDLL---LCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF 420 (458)
Q Consensus 346 ~l~~~~~~~~~~~l~~~~~l--~~L~~ll---~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (458)
++..+.+ .+ +.+.. +.+-.+= ..++.+......|.+.++.-.....+.. ......++.+.+.|.-
T Consensus 645 ~l~e~~d-~f-----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~ 714 (743)
T COG5369 645 NLSENSD-KF-----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIR 714 (743)
T ss_pred ccccccc-cc-----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHH
Confidence 3332211 11 01111 2222121 1345567777788777743221111100 1122457888899999
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 421 KKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 421 ~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
+-++.++.++++.|++++-.++..+
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhh
Confidence 9999999999999999999988764
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.60 E-value=2.6e-05 Score=72.06 Aligned_cols=241 Identities=16% Similarity=0.027 Sum_probs=162.3
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 24 ILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 24 ~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+++.++..+. .+++.+...++.++... + .. ..+..|++.+.+.+ +.++..++..|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---E-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---C-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCch-----
Confidence 3566677774 45566666555554322 1 11 13788888888887 78999999888865542
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 103 NVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
...+.|+.++.+.++.++..++.+++... ....+.+...+ ++.++.++..++.++..+-..
T Consensus 117 ------~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 117 ------QAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAAL-THEDALVRAAALRALGELPRR 177 (410)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence 44688888888888888888887776621 11345677777 688888999999999887543
Q ss_pred CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHh
Q 043950 183 KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l 262 (458)
..++.|...+.+.++.++..++.++..+-. .. ....+..+...........+..++...
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 455667778889999999999988876632 21 223444433333333333333333222
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL 342 (458)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~ 342 (458)
.. ...++.|..+++.+ .++..++++++.+-. + ..++.|+..+... .++..|..
T Consensus 237 --~~---------~~a~~~L~~ll~d~---~vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~--~~aR~A~e 289 (410)
T TIGR02270 237 --GG---------PDAQAWLRELLQAA---ATRREALRAVGLVGD--V---------EAAPWCLEAMREP--PWARLAGE 289 (410)
T ss_pred --Cc---------hhHHHHHHHHhcCh---hhHHHHHHHHHHcCC--c---------chHHHHHHHhcCc--HHHHHHHH
Confidence 11 14677888888765 489999999997742 2 3688888888754 49999999
Q ss_pred HHHHhhc
Q 043950 343 AIANATV 349 (458)
Q Consensus 343 ~L~~l~~ 349 (458)
++..++-
T Consensus 290 A~~~ItG 296 (410)
T TIGR02270 290 AFSLITG 296 (410)
T ss_pred HHHHhhC
Confidence 9999974
No 90
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=5.9e-07 Score=81.64 Aligned_cols=286 Identities=14% Similarity=0.204 Sum_probs=189.2
Q ss_pred HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 043950 59 IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138 (458)
Q Consensus 59 ~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 138 (458)
+.-+.+..+.+.|+++|+.++ ..+..-+...++|..-..+..+..+.+.|++..|+.++.+.+..++.+..|.+.++..
T Consensus 424 RTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmy 502 (743)
T COG5369 424 RTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMY 502 (743)
T ss_pred HhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence 334556788999999999987 6777778888999888788889999999999999999999999999999999999986
Q ss_pred CCCch-hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC--CChhhh------hhhHHHHHHhhcCCChHH
Q 043950 139 DSPGC-RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ--PPFDQV------RPALPALAQLIHLDDEEV 209 (458)
Q Consensus 139 ~~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~------~~~l~~l~~ll~~~~~~~ 209 (458)
+.... +-.....-++..++... +++.-.++..+...+.|+..+... ...... .-+...++..+...+|-.
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~-NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~ 581 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYT-NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPME 581 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHh-cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchh
Confidence 65432 22345566788888888 777888999999999999875311 111111 235666777788888777
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHh-CcHHHHHHHh----CC-------CCccchhhHHHHHhHhhcCChhhHHHHHhcC
Q 043950 210 LSDACWTLSYLSYGTNDKIQVVIEA-GVCRRLVELL----GH-------PSPSVLTPALWTVGNIVMGDDFQTQCIINHG 277 (458)
Q Consensus 210 ~~~~~~~l~~l~~~~~~~~~~~~~~-~~i~~L~~ll----~~-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 277 (458)
....+..+.+++..++.....+.+. .++..+..+| .. .+..+...-.....++....+...+.+....
T Consensus 582 i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p 661 (743)
T COG5369 582 ILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTP 661 (743)
T ss_pred hhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCC
Confidence 7777888888886665544444333 3444444433 22 1112222223333334332222211111001
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHHhhc---CC------HHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 278 AVPCLLALLIHNHKKSIKKVACWTISNITA---GN------REQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~---~~------~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
-.+..-+- ....+.+.-.+..|.+.|+.- +. .+.++.+.+.|+-+.+......+++.+++.+-.+|.++
T Consensus 662 ~~D~~~~d-~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 662 HLDNMKKD-STTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred Cccccccc-cCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 11111000 111144577788888888653 22 25566677888888888877888889999999999887
No 91
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.55 E-value=3.9e-05 Score=70.10 Aligned_cols=314 Identities=16% Similarity=0.078 Sum_probs=194.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCCChh
Q 043950 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQPPFD 189 (458)
Q Consensus 111 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~~~~ 189 (458)
.+.+..++-+++.++|..+.+++..+..+.... ..+.+.+.-..++.-+..+ ....=+.+|+..++.+..... ....
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~~ 104 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPKE 104 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Cccc
Confidence 344443444445999999999999998776554 3445555544555555433 334457789988888877632 2334
Q ss_pred hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh
Q 043950 190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 269 (458)
Q Consensus 190 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~ 269 (458)
...+++..++....+.+...+..++.+++.++-.+++. +...|++..+.+.+.++..++....+.++..+.. ++..
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~t 180 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRT 180 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccch
Confidence 46888999999999999999999999999999766643 6788999999999988666677788888888875 4555
Q ss_pred HHHHHhcCChHHHHHHhccC------Chh--hHHHHHHHHHHHhhcCCHHHHHHHH-Hc-CChHHHHHHhccCChhhHHH
Q 043950 270 TQCIINHGAVPCLLALLIHN------HKK--SIKKVACWTISNITAGNREQIQAVI-DA-GLIVPLVNVLQDAEFDIKKE 339 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~------~~~--~v~~~a~~~l~nl~~~~~~~~~~l~-~~-~~~~~L~~ll~~~~~~~~~~ 339 (458)
++.+...--++.++.-+.+. .+. +.-..+..++..+.+.= ...-.+. +. ..+..|++.|..++++++..
T Consensus 181 R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW-~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 181 RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW-PGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC-CceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 55555433444444444322 022 23344555555554421 1111112 11 47888999999999999999
Q ss_pred HHHHHHHhhcCCCHHHHHHH------HHCCCh---HHHHhhccCCC---HHHHHHHHHHHHHHHHhchhhcccCCCCCch
Q 043950 340 AALAIANATVRGTHEQIKYL------VREGCI---KPLCDLLLCVD---PKIVTVCLEGLENILKVGEAEKNTGSTIGDV 407 (458)
Q Consensus 340 a~~~L~~l~~~~~~~~~~~l------~~~~~l---~~L~~ll~~~~---~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 407 (458)
.+..+..+..-..+.....+ ...|-. ..+..-..... +.....-...+.++..
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a--------------- 324 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA--------------- 324 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH---------------
Confidence 99999999765433221111 111111 00110000000 0000011122222211
Q ss_pred hHHHHHHHhcchHHHHHhhhcCC-ChHHHHHHHHHHHHhcC
Q 043950 408 NQYARLVEEDEGFKKIEGLKSHD-NNGIREKAVKILETYWC 447 (458)
Q Consensus 408 ~~~~~~~~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~ 447 (458)
-....|.++|.++.|..+..+. ++.+..+|--++..++.
T Consensus 325 -Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 325 -LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred -HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 1355667999999999996665 88899999988887653
No 92
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=2e-05 Score=80.60 Aligned_cols=379 Identities=13% Similarity=0.094 Sum_probs=211.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CChhhHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS-GTSMNTN 103 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~-~~~~~~~ 103 (458)
...+...+.+++|..|..++.-|..+...-+...........+...+.++|.+.+ +..|..|.+.|+-+-. ++...++
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHH
Confidence 3455566778999999876544444433332233333334456688999999888 7889999888775543 2233333
Q ss_pred HHHhCCChHHHHHhhCCC---------CHHHHH-------------HHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc
Q 043950 104 VVIDHGAVPIFVKLLASP---------SDDVRE-------------QAVWALGNVAADSPGCRNLVLREEALIPLLAQLN 161 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~---------~~~~~~-------------~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~ 161 (458)
.+ +..|+.-|..+ +.++.+ .+..-|.||+.+-. +-..+-..+++.+
T Consensus 899 ~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLAN 966 (1702)
T ss_pred HH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhh
Confidence 33 34444433221 111111 12223444443211 1112344555554
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHH
Q 043950 162 EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241 (458)
Q Consensus 162 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 241 (458)
.+..-..+.-|+..+..++.............++|.|.++=-+++..++.....+-..+...+........ ..+++-|+
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL 1045 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELL 1045 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHH
Confidence 44444455556666777766543334445577778887777788888876655554445544444444333 35888888
Q ss_pred HHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHH---HHHHHHhhc-----CCHHHH
Q 043950 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVA---CWTISNITA-----GNREQI 313 (458)
Q Consensus 242 ~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a---~~~l~nl~~-----~~~~~~ 313 (458)
.-+.+..+.+|+.+|.++..|..+.+.....-.-..++..+...+.+- ...||+.| +.+++-++. .+....
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 889999999999999999999987653311110013344444444444 45677655 444554442 112222
Q ss_pred HHHHHcCChHHHHH--HhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHH-HHHHHHHH
Q 043950 314 QAVIDAGLIVPLVN--VLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTV-CLEGLENI 390 (458)
Q Consensus 314 ~~l~~~~~~~~L~~--ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~-~~~~l~~l 390 (458)
+..++ .++|.|++ .+ +.-+++|..++..+..++.........++. ..++.|.+....-++.|... ++.+ .++
T Consensus 1125 ~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~~ 1199 (1702)
T KOG0915|consen 1125 KEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-INI 1199 (1702)
T ss_pred HHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hhh
Confidence 22222 25555554 23 556899999999999999876654444432 25677777777666665544 3443 222
Q ss_pred H-HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHH
Q 043950 391 L-KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIR 435 (458)
Q Consensus 391 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~ 435 (458)
- ...+. ........+-.++.|..+.++-|..+-
T Consensus 1200 e~ealDt------------~R~s~aksspmmeTi~~ci~~iD~~vL 1233 (1702)
T KOG0915|consen 1200 ETEALDT------------LRASAAKSSPMMETINKCINYIDISVL 1233 (1702)
T ss_pred HHHHHHH------------HHHhhhcCCcHHHHHHHHHHhhhHHHH
Confidence 1 11111 113333444456777777666655543
No 93
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=7.5e-05 Score=70.12 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=149.3
Q ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC---h--hhHHH
Q 043950 156 LLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT---N--DKIQV 230 (458)
Q Consensus 156 l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~---~--~~~~~ 230 (458)
++.+. ++.|..++.+|...+-.|... ......+....++.+.+.+..++..|+..++-..... . +..+.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg-----~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEG-----FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhccc-----ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 777888899999988888763 2233556677888999999999998866554443221 1 11111
Q ss_pred HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC--
Q 043950 231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-- 308 (458)
Q Consensus 231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-- 308 (458)
-.....+..+...+.+-+..+|..|...||.+-.-+++...+.++..++..+-..-.....+ .+...=+.++++
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSSGKE 352 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch----HHHHhcCCcccCcc
Confidence 11224788899999999999999999999998776666665555544444222111111011 111111111111
Q ss_pred ---------CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950 309 ---------NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379 (458)
Q Consensus 309 ---------~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 379 (458)
..+.-..++..|.-..++.-+.++-.+||.+|...++.++... +.+... .+..|++++.++...|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIEVV 426 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHHHH
Confidence 1122344667888888999999989999999999999998853 344333 4889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 043950 380 VTVCLEGLENILKV 393 (458)
Q Consensus 380 ~~~~~~~l~~l~~~ 393 (458)
+..++.+|..|...
T Consensus 427 RL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 427 RLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 94
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.48 E-value=6.5e-06 Score=60.87 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=108.3
Q ss_pred HhhccHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950 20 TKLEILPAMVAGVW-SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGT 98 (458)
Q Consensus 20 ~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 98 (458)
...+.+..|+.-.+ ..+.+.+......|.|++-+ +.+...+.+..++..++..+..++ +.+.+.++..|+|+|. +
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d 88 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-D 88 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-C
Confidence 34556777776555 56788888888999999776 678888999999999999999999 8999999999999999 5
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhh
Q 043950 99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLRE 150 (458)
Q Consensus 99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 150 (458)
+.+...+.+.+++|.++..+.++...+...++.++..++......++.+...
T Consensus 89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 8889999999999999999999999999999999999987766666666543
No 95
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00015 Score=74.53 Aligned_cols=343 Identities=17% Similarity=0.139 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 116 (458)
..-+..|+.-+..++...+.. .+-.-..+||.|.+.=-+++ +.+|.....+...+..++....+.... .+++-|+.
T Consensus 971 wnSk~GaAfGf~~i~~~a~~k--l~p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAGEK--LEPYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred hhcccchhhchHHHHHHHHHh--hhhHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence 444555666666665543111 11222347888888877888 899998888888888865555554443 55777777
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCCCch--hhHHhhhCCHHHHHHHhcccccHHHHHHH---HHHHHHhhcCC-----CCC
Q 043950 117 LLASPSDDVREQAVWALGNVAADSPGC--RNLVLREEALIPLLAQLNEHAKLSMLRIA---TWTLSKLCKGK-----PQP 186 (458)
Q Consensus 117 ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a---~~~l~~l~~~~-----~~~ 186 (458)
-+.+.--.+|+.++.+|..|..+.|.. .+.+. .....+++.+ ++-.+.++..+ +.+++.+|-.. +..
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 777788899999999999999887642 12221 1333444444 44445566654 45556555432 122
Q ss_pred ChhhhhhhHHHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhh-HHHH------
Q 043950 187 PFDQVRPALPALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTP-ALWT------ 258 (458)
Q Consensus 187 ~~~~~~~~l~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~-a~~~------ 258 (458)
.......++|.+.. -+-+.-++++.-++.++..++........... ..+++.|+.....-++.+... +++.
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence 22333444444432 11255689999999999999977765443222 246666666665544433221 2222
Q ss_pred ----Hh-HhhcCChhh--HHHHH-------hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHH
Q 043950 259 ----VG-NIVMGDDFQ--TQCII-------NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVP 324 (458)
Q Consensus 259 ----l~-~l~~~~~~~--~~~~~-------~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 324 (458)
+. +.+...|.. +...+ -...+|.+.++++++..-..|..++..++-++......+... ....+..
T Consensus 1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRA 1281 (1702)
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHH
Confidence 11 111111100 00111 123566677777666455566666666666653110111100 0124556
Q ss_pred HHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 325 LVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 325 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
++..+.+.++.+++....|.+.++...++++.+.+.+ ..+..++...++ ....++..+.+|..+
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie----~~l~~~l~k~es-~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE----TLLADLLGKDES-LKSISCATISNIANY 1345 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH----HHHHHHhccCCC-ccchhHHHHHHHHHh
Confidence 6666777899999999999999999988888777544 223333333222 224445555544443
No 96
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.44 E-value=3.9e-05 Score=65.59 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=146.9
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHH
Q 043950 196 PALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCI 273 (458)
Q Consensus 196 ~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~ 273 (458)
..+-.+++.-++-.+.-+.+|+.++......+.-...+.-.-..++.++++ +..+++...+.+++-++. ++...+-+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi 230 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHH
Confidence 344455555566677888899998886555444444444455677777776 356788889999988875 44333221
Q ss_pred H-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccC---ChhhHHHHHHHHHHhh
Q 043950 274 I-NHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDA---EFDIKKEAALAIANAT 348 (458)
Q Consensus 274 ~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~---~~~~~~~a~~~L~~l~ 348 (458)
- ....+..++.+.+.....+|-+-++.++.|++. .....+..+.-.|-+.+-++.|... |.+++...-..=..+.
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 124566777777766467888899999999987 3334444444434334445555432 5555433322222221
Q ss_pred cCC---------------------C--------HHHHHHHHHC--CChHHHHhhccCCCHH-HHHHHHHHHHHHHHhchh
Q 043950 349 VRG---------------------T--------HEQIKYLVRE--GCIKPLCDLLLCVDPK-IVTVCLEGLENILKVGEA 396 (458)
Q Consensus 349 ~~~---------------------~--------~~~~~~l~~~--~~l~~L~~ll~~~~~~-v~~~~~~~l~~l~~~~~~ 396 (458)
... . ......+.+. ..++.|..+++..++. ....|+.-+..+.+..++
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 110 0 0122222222 2366677777766554 344556666666665554
Q ss_pred hcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 397 EKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
. ...+...|+.+.|.+|++|++++|+-.|.+.++.+..
T Consensus 391 ~-------------~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 391 I-------------NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred H-------------HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 3 7778899999999999999999999999998887754
No 97
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00058 Score=64.87 Aligned_cols=297 Identities=12% Similarity=0.098 Sum_probs=184.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
+..+.+-|.+.|+....-|+.++.++.+. +..+.+ -+.+-++|-+++ .+-++..|+.+|..+...+|+..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 44555666688888889999999988553 222222 222225555443 24678889999988888655532
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-------c---------cccHH
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-------E---------HAKLS 167 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-------~---------~~~~~ 167 (458)
-..+..+.++++|.+.+..+...+...+.-++...|+.. .+.++.-+..+. . -+.|=
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-----hhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 223567889999988888888888888888876665432 223333333331 1 12344
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC----CC---hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHH
Q 043950 168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL----DD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRL 240 (458)
Q Consensus 168 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~----~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L 240 (458)
+....+..|.++-.............++..+....+. .+ ...+..++.-..+++.+-+...+.+. ..+..|
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L 334 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL 334 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence 5555666666652221222233334555555554441 11 23344445544555544333333333 357889
Q ss_pred HHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 043950 241 VELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAG 320 (458)
Q Consensus 241 ~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 320 (458)
.+++.+.+..+|.-|+..+..++.... ....+-.+ .+.++..|+...|..+|+.|+..|..+|-. ++.+.
T Consensus 335 g~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~----- 404 (938)
T KOG1077|consen 335 GQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQ----- 404 (938)
T ss_pred HHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHH-----
Confidence 999999999999999999999987533 22333333 788999999665999999999999999852 22222
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
++.-+++.|.+.++.+|++...=.+-+++
T Consensus 405 IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 55667888888888888777665555554
No 98
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.43 E-value=2.4e-05 Score=66.83 Aligned_cols=231 Identities=15% Similarity=0.175 Sum_probs=153.7
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhh
Q 043950 73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI-DHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLR 149 (458)
Q Consensus 73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 149 (458)
++++.-+ +-.+.-|++++.++.. .++.|...- +...-..+...+++ +..+++.+.+.+++-++... .+.+.+-.
T Consensus 156 kl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K 232 (432)
T COG5231 156 KLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDK 232 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHH
Confidence 3444444 5678889999999998 577776554 44455667777766 56889999999999887554 33333222
Q ss_pred -hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC--hhhhhhhHHHHHHhhc---CCChHHHHHHHHHHHHhccC
Q 043950 150 -EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP--FDQVRPALPALAQLIH---LDDEEVLSDACWTLSYLSYG 223 (458)
Q Consensus 150 -~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~~ 223 (458)
...+..+++.......+.+.+-++.++.|++...|... .....+-+...++.+. -.|.+++...-..=..+...
T Consensus 233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~ 312 (432)
T COG5231 233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN 312 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence 23456666666555667789999999999998543221 1222332333334443 23555544433222222211
Q ss_pred Chh------------------------------hHHHHHH--hCcHHHHHHHhCCCCcc-chhhHHHHHhHhhcCChhhH
Q 043950 224 TND------------------------------KIQVVIE--AGVCRRLVELLGHPSPS-VLTPALWTVGNIVMGDDFQT 270 (458)
Q Consensus 224 ~~~------------------------------~~~~~~~--~~~i~~L~~ll~~~~~~-~~~~a~~~l~~l~~~~~~~~ 270 (458)
... +...+.+ ..++..|.++++..++. ....||.-++.+.+..|+..
T Consensus 313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH
Confidence 110 1111221 24788999999987766 56678899999999999999
Q ss_pred HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
..+.+.|+=+.++++++++ +++||-+|..++..+..
T Consensus 393 ~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 393 AVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999887653
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.41 E-value=0.00018 Score=66.04 Aligned_cols=250 Identities=28% Similarity=0.319 Sum_probs=176.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
..++.+.+.+.+++..++..|+..+..+... ..++.+..++.+.+ +.+|..|+.+|+.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~~----- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGDP----- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCCh-----
Confidence 4688889999999999999999987666332 36899999999999 89999999988887762
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccccc---------H--HHHH
Q 043950 103 NVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAK---------L--SMLR 170 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~---------~--~~~~ 170 (458)
..++.++.++. +.+..+|..+.++|+.+-.. ..+.+++..+.+... + .++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 34788999888 58999999999999998322 236677777743221 1 2444
Q ss_pred HHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCcc
Q 043950 171 IATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPS 250 (458)
Q Consensus 171 ~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 250 (458)
.+...+..+-. ....+.+..++.+.+..++..+..+++.+.... ..+.+.+...+.+++..
T Consensus 168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 45555544432 345677888888888889999999888886443 23557788888888888
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ 330 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 330 (458)
++..++..++.+-.. ...+.+...+... +..++..+....... ... .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence 898888888776431 2456677777776 666665555544411 111 12444555566
Q ss_pred cCChhhHHHHHHHHHHhhc
Q 043950 331 DAEFDIKKEAALAIANATV 349 (458)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~ 349 (458)
+.+..++..+..++.....
T Consensus 286 ~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 286 DEANAVRLEAALALGQIGQ 304 (335)
T ss_pred cchhhHHHHHHHHHHhhcc
Confidence 6677777777777776654
No 100
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.35 E-value=0.00063 Score=63.16 Aligned_cols=352 Identities=13% Similarity=0.103 Sum_probs=203.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC---HHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 043950 35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY---PQLQYEAAWALTNIASGTSMNTNVVIDHGAV 111 (458)
Q Consensus 35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i 111 (458)
.++-.|.+|+..|.++-..+ .+ ....+++.+..+.. +.....-+++...+...+++.+..+ .
T Consensus 202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R 266 (898)
T ss_pred CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence 35677888888887763321 12 12344444443321 2223334455566666666666555 4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhh
Q 043950 112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQV 191 (458)
Q Consensus 112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 191 (458)
|.|-..+++....+.-.+++.+..++...-. ....+ ..+..|-.+| .++....+..|+.+|..++...|.. +
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~k----v 338 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQK----V 338 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCce----e
Confidence 7777788777777888888888887754311 11111 1344444445 6777788999999999998876533 2
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 271 (458)
..+-+.+-.++.+.+..+...|+..|..- +.++.+.. ++..+..++.+-+...+.-+..++..|+-.-+....
T Consensus 339 ~vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idr-----Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 339 SVCNKEVESLISDENRTISTYAITTLLKT--GTEETIDR-----LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred eecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHH-----HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 23334455677777878877777777554 33333332 234444444443444444444444444443343322
Q ss_pred HHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950 272 CIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG 351 (458)
Q Consensus 272 ~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 351 (458)
. .+..|...|......+.++.+..+++.+....|+.... ++..|+..+.+. +..+-+...|+-+-..+
T Consensus 412 s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc--ey~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 S-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC--EYHQITVRILGILGREG 479 (898)
T ss_pred H-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc--chhHHHHHHHHHhcccC
Confidence 2 24445554443336788888888888887755444333 455677777643 23333444555444332
Q ss_pred CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCC
Q 043950 352 THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDN 431 (458)
Q Consensus 352 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 431 (458)
.... -...++.++.+-+--++.-|+..|..+|.++.-..+.... .+ .....+.+.+++.+
T Consensus 480 P~a~----~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~-----------~~-----sv~~~lkRclnD~D 539 (898)
T COG5240 480 PRAK----TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS-----------PQ-----SVENALKRCLNDQD 539 (898)
T ss_pred CCCC----CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc-----------HH-----HHHHHHHHHhhccc
Confidence 1100 0112356666666667888999999999887644333210 11 22456778899999
Q ss_pred hHHHHHHHHHHHHhcCC
Q 043950 432 NGIREKAVKILETYWCG 448 (458)
Q Consensus 432 ~~v~~~a~~~l~~~~~~ 448 (458)
++|+.+|.-.+..+-..
T Consensus 540 deVRdrAsf~l~~~~~~ 556 (898)
T COG5240 540 DEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999888776433
No 101
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.35 E-value=0.00011 Score=67.18 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=171.5
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC--ccchhhHHHHHhHhhcCChhh
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS--PSVLTPALWTVGNIVMGDDFQ 269 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~l~~l~~~~~~~ 269 (458)
....+.+..++-+++.+++..+.+++..+..... ..+.+.+.++--.++..|..++ ..-|+.|+..+..+.......
T Consensus 24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 4555666656666669999999999999985554 4566778787777777777643 346778999998887653211
Q ss_pred HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
+ .+..+++..++.+..+. +...+..|..+++.++-.+|+ .+...|++..|.+.+.++..++....+.++..+..
T Consensus 103 -~-~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 103 -K-EIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred -c-cCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 1 23457899999999998 888999999999999987765 45688999999999988777788889999999986
Q ss_pred CCCHHHHHHHHHCCChHHHHhhccC-------CCH--HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH
Q 043950 350 RGTHEQIKYLVREGCIKPLCDLLLC-------VDP--KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF 420 (458)
Q Consensus 350 ~~~~~~~~~l~~~~~l~~L~~ll~~-------~~~--~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (458)
.+..++++...--++.++.-+.+ .+. +-...+..++..+++.....- .-...+..++
T Consensus 177 --~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl------------~l~~~~~~~l 242 (371)
T PF14664_consen 177 --SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL------------YLSMNDFRGL 242 (371)
T ss_pred --CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee------------eeecCCchHH
Confidence 44555655443334444433321 222 356677888888888776642 1122233578
Q ss_pred HHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950 421 KKIEGLKSHDNNGIREKAVKILETYWCGRV 450 (458)
Q Consensus 421 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 450 (458)
+.|.+.+..+++++++....++-..|.-..
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 888888899999999998888887776543
No 102
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0002 Score=68.38 Aligned_cols=319 Identities=14% Similarity=0.064 Sum_probs=159.6
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCH
Q 043950 74 FLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEAL 153 (458)
Q Consensus 74 ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 153 (458)
=|++++ +-+|-..++.|+.+-. ++... ..+|.+...|.....-+|++|..++..|-.... ..+. .+.
T Consensus 107 DLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--Dap 173 (948)
T KOG1058|consen 107 DLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--DAP 173 (948)
T ss_pred hccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--ChH
Confidence 346677 6777777777777654 44333 457888899999999999999999888854421 1111 233
Q ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHH
Q 043950 154 IPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIE 233 (458)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 233 (458)
..+-..+....|+..+++|.-.|...-.. . .-..+...+.-+.+-++..+......+...+..++.. .
T Consensus 174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E---r----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~ 241 (948)
T KOG1058|consen 174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE---R----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----K 241 (948)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHhcCHH---H----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----h
Confidence 33344455667787888877655443211 0 0011111111112223444444444444444322221 1
Q ss_pred hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH---------------------------------hcCChH
Q 043950 234 AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII---------------------------------NHGAVP 280 (458)
Q Consensus 234 ~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~---------------------------------~~~~~~ 280 (458)
...+..+..+|.+.++.++-.|..++-+++. .+...+... -.|.+-
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~m 320 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIM 320 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHH
Confidence 2344555566655555555555555444432 111111100 012233
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-cc------CChhhHHHHHHHHHHhhcCCCH
Q 043950 281 CLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-QD------AEFDIKKEAALAIANATVRGTH 353 (458)
Q Consensus 281 ~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~------~~~~~~~~a~~~L~~l~~~~~~ 353 (458)
.++.+|.++ +.++|+.+......++.+ .++.. ++..|-.=+ +. .+.+.|...+.++..++....
T Consensus 321 DvLrvLss~-dldvr~Ktldi~ldLvss--rNved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp- 391 (948)
T KOG1058|consen 321 DVLRVLSSP-DLDVRSKTLDIALDLVSS--RNVED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP- 391 (948)
T ss_pred HHHHHcCcc-cccHHHHHHHHHHhhhhh--ccHHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-
Confidence 334444444 555555555555555431 11111 111111111 11 122334555555555544321
Q ss_pred HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHH-HhhhcCCCh
Q 043950 354 EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI-EGLKSHDNN 432 (458)
Q Consensus 354 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~~~~ 432 (458)
+.. ..+++.|++.+.+.++..-...+..+...++..++. +..+ ++++ +.+-.=.+.
T Consensus 392 ~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-------------r~~i-----i~~l~~~~~~irS~ 448 (948)
T KOG1058|consen 392 EVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-------------RASI-----IEKLLETFPQIRSS 448 (948)
T ss_pred HHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-------------HHHH-----HHHHHHhhhhhccc
Confidence 211 234677777777777766666666666666655543 1111 2222 222223456
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 043950 433 GIREKAVKILETYWCGRV 450 (458)
Q Consensus 433 ~v~~~a~~~l~~~~~~~~ 450 (458)
+++.-|.|++..|.+++.
T Consensus 449 ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 449 KICRGALWILGEYCEGLS 466 (948)
T ss_pred ccchhHHHHHHHHHhhhH
Confidence 788899999999988765
No 103
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.32 E-value=0.0012 Score=62.36 Aligned_cols=347 Identities=16% Similarity=0.124 Sum_probs=202.5
Q ss_pred HHHHHHhhcCCCH---HHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 25 LPAMVAGVWSDDN---SLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 25 i~~l~~~l~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
+|.++..|..+++ ......+.+|..++.. ..-.+.+.. .++..+...++.....+....++.++..+.....+.
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3677777876554 5667788888888664 232333222 556666666654444667777888888776633322
Q ss_pred H-----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc--------
Q 043950 102 T-----NVVIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-------- 161 (458)
Q Consensus 102 ~-----~~~~~~~~i~~L~~ll~~-----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-------- 161 (458)
. ....+..+++.+..+... . +..+-..+...+..+...-+.-++. ..+..+...+.
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~----~~~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ----EILDELYSLFLSPKSFSPF 153 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHHccccccCCC
Confidence 2 233344477777776633 1 2455566666666665544332221 12334444432
Q ss_pred --ccc-----cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCC--hhhHHHH
Q 043950 162 --EHA-----KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGT--NDKIQVV 231 (458)
Q Consensus 162 --~~~-----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~~ 231 (458)
... ......-...++..+- +..........+..++.+.. ..++..+..++.+++.++..- ++...
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-- 228 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLR---KDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-- 228 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCC---cccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH--
Confidence 010 1111222223333332 33333344557777777655 445888888899888888442 22112
Q ss_pred HHhCcHHHHHHHh-CCCCccchhhHHHHHhHh----h-cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 232 IEAGVCRRLVELL-GHPSPSVLTPALWTVGNI----V-MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 232 ~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l----~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
+++..+.... .......+..++.++..+ . ++++.. . ..++.+++++.+ +++...++.++.-+
T Consensus 229 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~lL~~---~~~g~~aA~~f~il 296 (415)
T PF12460_consen 229 ---EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLELLSS---PELGQQAAKAFGIL 296 (415)
T ss_pred ---HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHHHhCC---hhhHHHHHHHHhhH
Confidence 2344444444 333444444544444333 2 333322 2 356778888875 47788888888888
Q ss_pred hcCCHHH--------HHHHHHc----CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950 306 TAGNREQ--------IQAVIDA----GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 306 ~~~~~~~--------~~~l~~~----~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 373 (458)
....+.. ++.+.+. .++|.|++.....+.+.+..-+.||.++..+-.......-. ..+++.+++.++
T Consensus 297 ~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~ 375 (415)
T PF12460_consen 297 LSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLS 375 (415)
T ss_pred hcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhC
Confidence 8753322 2223332 36777888777777778999999999999876544322211 247888899999
Q ss_pred CCCHHHHHHHHHHHHHHHHhchh
Q 043950 374 CVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 374 ~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.++++++..++.++..++...+.
T Consensus 376 ~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 376 LPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHcCHH
Confidence 99999999999999999876543
No 104
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.0012 Score=64.90 Aligned_cols=139 Identities=14% Similarity=0.067 Sum_probs=96.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 26 PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 26 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
|.+++.+.+.|.++..---..|.+.+...+ ...+ -.++.+.+=+++++ +.+|..|++.++.+-. ++...
T Consensus 58 ~dViK~~~trd~ElKrL~ylYl~~yak~~P---~~~l---LavNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-- 126 (757)
T COG5096 58 PDVIKNVATRDVELKRLLYLYLERYAKLKP---ELAL---LAVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-- 126 (757)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhccCH---HHHH---HHHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH--
Confidence 333444444444444444444445544321 1111 14777888889999 9999999999987755 33332
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 106 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
.+++.+.+++.++++.||..|+.++.++-.-++. ...+.|.+..+..++ .+.+|.+..+|+.++..+...
T Consensus 127 ---~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 ---NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ---HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 3478999999999999999999999999765543 455666666666666 889999999999999998765
No 105
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.30 E-value=0.00029 Score=65.25 Aligned_cols=209 Identities=19% Similarity=0.083 Sum_probs=154.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
+..+++.|.+.++.++..++.+|..+-. ....+.|+.++++.+ +.++..++.+++....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~-p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASE-PPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhcc--------
Confidence 7889999999999999999999987621 135788999999888 8999988877776332
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC
Q 043950 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP 184 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 184 (458)
...+.+..+|++.++.++..++.+|+.+... ..++.|...+ .+.++.++..+.+++..+-.
T Consensus 147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al-~d~~~~VR~aA~~al~~lG~--- 207 (410)
T TIGR02270 147 ----DPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYL-RDSDPEVRFAALEAGLLAGS--- 207 (410)
T ss_pred ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHH-cCCCHHHHHHHHHHHHHcCC---
Confidence 2357899999999999999999999998432 2455566666 88999999999999977632
Q ss_pred CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950 185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVM 264 (458)
Q Consensus 185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~ 264 (458)
....+.+..+....+.........++... ..+ ..++.|..+++++. ++..++.+++.+-.
T Consensus 208 -------~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 208 -------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGD 267 (410)
T ss_pred -------HhHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence 23344555544444444444444444333 111 45678888888755 89999999987743
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
...++.|+..+..+ .+++.|..++..++.
T Consensus 268 -----------p~av~~L~~~l~d~---~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 268 -----------VEAAPWCLEAMREP---PWARLAGEAFSLITG 296 (410)
T ss_pred -----------cchHHHHHHHhcCc---HHHHHHHHHHHHhhC
Confidence 35788899999755 499999999999986
No 106
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.28 E-value=4.9e-05 Score=76.09 Aligned_cols=270 Identities=15% Similarity=0.127 Sum_probs=175.3
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CChh
Q 043950 25 LPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS---GTSM 100 (458)
Q Consensus 25 i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~---~~~~ 100 (458)
++.+...+.+ .....+..|+..|..++..-..+ ..-..++|.++.++.++. .++|..|+.+|..+.. +-+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4445444443 34678889999988886653222 222358999999999999 8999999999988765 2222
Q ss_pred hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc------------------CCCch---hhHHhhh------CC
Q 043950 101 NTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAA------------------DSPGC---RNLVLRE------EA 152 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~------------------~~~~~---~~~~~~~------~~ 152 (458)
.-..++..-++|.|-+++.+ ....+|-.-+..|+.|+. +.++. .+.-.+. ..
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 33334445668888888887 444455444445554442 11111 0000000 02
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI 232 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 232 (458)
+..++.-|..++++-+++..+..+.-||.-. .......-+++.|+.+|++.|+.++..-...+..++-.-..+ -+
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~ 653 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SV 653 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eH
Confidence 3333333335555667777777777776432 112223567888999999999999988887777666322211 13
Q ss_pred HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
+..++|.|.+-|.++++.|...|+.++.-|+...--....+. .+++.+..+|-++ +.-+|+.++..|...+.
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999874433323332 4677778888888 88999999999988875
No 107
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.28 E-value=1.7e-06 Score=51.35 Aligned_cols=41 Identities=44% Similarity=0.853 Sum_probs=38.2
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA 138 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~ 138 (458)
++++++.+++.|++|.|++++.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 108
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0034 Score=59.92 Aligned_cols=288 Identities=18% Similarity=0.205 Sum_probs=171.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
+..+.+=|.+.+ +....-|+.+++|+.+ .+.+..+.. . ++ ++|.+ ...-++..++.+|..+.+..|+.
T Consensus 113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~-D-I~---KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD-D-IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh-h-hH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 444555556666 6778889999999987 455554432 1 33 55555 34678889999999998887663
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-------------CCChHHHHH
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-------------LDDEEVLSD 212 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-------------~~~~~~~~~ 212 (458)
+...+....++.+| ++.+..+...+...+.-++...+..........+..+..... -+.|-.+..
T Consensus 183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 22234577888888 555566777777777777777654444434444444433332 134667788
Q ss_pred HHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--Ccc-----chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH
Q 043950 213 ACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPS-----VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL 285 (458)
Q Consensus 213 ~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l 285 (458)
+++.|.+.-...+.... ..-..+++.++.....+ ... .+...++-.-+++..-+..-..+. ..+..|-++
T Consensus 261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f 337 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF 337 (938)
T ss_pred HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence 88888777422221111 11112233333333311 111 122223323334333332223222 457788889
Q ss_pred hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCC
Q 043950 286 LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYLVREGC 364 (458)
Q Consensus 286 l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 364 (458)
+.+. +..+|.-|...++.++... ...+. ++.. ...++..|+ ..|..+|+.|+..|..++..++ .+.+
T Consensus 338 ls~r-E~NiRYLaLEsm~~L~ss~-~s~da-vK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N---ak~I----- 405 (938)
T KOG1077|consen 338 LSHR-ETNIRYLALESMCKLASSE-FSIDA-VKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN---AKQI----- 405 (938)
T ss_pred hhcc-cccchhhhHHHHHHHHhcc-chHHH-HHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh---HHHH-----
Confidence 9888 8889999999999888642 22222 2222 667888888 6699999999999999986543 3332
Q ss_pred hHHHHhhccCCCHHHHHH
Q 043950 365 IKPLCDLLLCVDPKIVTV 382 (458)
Q Consensus 365 l~~L~~ll~~~~~~v~~~ 382 (458)
+..+..++.+.+..+++-
T Consensus 406 V~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 406 VAELLQYLETADYSIREE 423 (938)
T ss_pred HHHHHHHHhhcchHHHHH
Confidence 455666777666655543
No 109
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.25 E-value=2.4e-06 Score=50.72 Aligned_cols=41 Identities=27% Similarity=0.543 Sum_probs=37.3
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
+++..+.+++.|+++.|+++|.++ ++.++++|+|+|+|+++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 356778899999999999999988 99999999999999974
No 110
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=6.3e-05 Score=70.60 Aligned_cols=253 Identities=16% Similarity=0.132 Sum_probs=163.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHH---HHHhhcCC---CCC
Q 043950 113 IFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWT---LSKLCKGK---PQP 186 (458)
Q Consensus 113 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~---l~~l~~~~---~~~ 186 (458)
-+..+..+.+..++.+|+.+|..+.....- ... .....++++ .+.+..++..|... +.|.+-.+ ...
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKL-SKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhcccccc-cHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 366667777777888887777777653211 111 244566667 66777888888544 45554211 222
Q ss_pred ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC-
Q 043950 187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG- 265 (458)
Q Consensus 187 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~- 265 (458)
.......++..+...+.+....++..+..+++.+-..+.+......+.+++..+-+.-... -+-..+..=+..+++
T Consensus 275 e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ah---krpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAH---KRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcc---cchHHHHhcCCcccCc
Confidence 3344477888889999999999999999999988776666665555555444322211100 011111111111111
Q ss_pred ----------ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChh
Q 043950 266 ----------DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFD 335 (458)
Q Consensus 266 ----------~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 335 (458)
.++....++.+|.-..++.-|.++ =.+||+.|...++.++..+|..... .+..|+++++++...
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV 425 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence 223345567788888889989877 7899999999999999866554332 577899999999999
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHH
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLE 388 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~ 388 (458)
||..|+.+|..++.... +++..++.+...+.+.++++++.....|.
T Consensus 426 VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999976421 23334666667777777777665554444
No 111
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.23 E-value=1.3e-05 Score=69.15 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=117.2
Q ss_pred hCCCCccchhhHHHHHhHhhcCC--hhhHHHHHh--cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 043950 244 LGHPSPSVLTPALWTVGNIVMGD--DFQTQCIIN--HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA 319 (458)
Q Consensus 244 l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~--~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 319 (458)
-.+.++..+..++..|..++.++ ......+.+ ..++..+...+.+. ...+...|+.++..++......+....+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 35678889999999999998766 222222221 15667788888877 8889999999999998643333444444
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcc
Q 043950 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKN 399 (458)
Q Consensus 320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~ 399 (458)
.++|.|+..+.+...-++..|..+|..++...+.. ..+ ....+.....++++.++..++..+..++........
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~--~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS--PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH--HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 47899999999988899999999999999875411 110 155677788999999999999999999887662110
Q ss_pred cCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 400 TGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
. ... ...+ ....+.+....++++++|++.|...+..|+
T Consensus 168 ~------l~~-~~~~--~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 168 V------LQK-SAFL--KQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp G------G---HHHH--HHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred h------hcc-cchH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 0 000 0001 223677888899999999999999888774
No 112
>PF05536 Neurochondrin: Neurochondrin
Probab=98.23 E-value=0.00013 Score=70.39 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=167.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh---HHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN---TNVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNV 136 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l 136 (458)
.+..-+.+|+..+ .+-+..++..+.++....+.. ++.+.+.=+.+.+-++|.+ +....+.-++.+|+.+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3667788899888 688999999999999865532 3346777668999999987 3467888899999999
Q ss_pred hcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHH
Q 043950 137 AADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWT 216 (458)
Q Consensus 137 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~ 216 (458)
|.+.. ....-.-.+-+|.+++.+..+.+..+...+..+|..++..+.........+.++.+.+.+.+ .+...+.++.+
T Consensus 85 ~~~~~-~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 85 CRDPE-LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred cCChh-hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 88543 22111112468999999966666689999999999999776555555668999999999887 66667888888
Q ss_pred HHHhccCChh-hHH--HHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh-----HHHHHhcCChHHHHHHhcc
Q 043950 217 LSYLSYGTND-KIQ--VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-----TQCIINHGAVPCLLALLIH 288 (458)
Q Consensus 217 l~~l~~~~~~-~~~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~~l~~ll~~ 288 (458)
+.+++..... ... .-.-..+++.+...+.......+...+..|+.+....+.. ...-.-..+...+..++++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 8887743331 100 0001145666777777777778888999999987655311 1112223456667777877
Q ss_pred CChhhHHHHHHHHHHHhhc
Q 043950 289 NHKKSIKKVACWTISNITA 307 (458)
Q Consensus 289 ~~~~~v~~~a~~~l~nl~~ 307 (458)
...+.-|..+....+.+..
T Consensus 243 r~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLLD 261 (543)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7677778777777777764
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.22 E-value=0.00043 Score=65.43 Aligned_cols=270 Identities=15% Similarity=0.103 Sum_probs=172.7
Q ss_pred CccHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-----
Q 043950 56 SPRIEDVIQAGVVPRFVEFL---------MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP----- 121 (458)
Q Consensus 56 ~~~~~~~~~~~~i~~L~~ll---------~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~----- 121 (458)
......+....++..|.++- ....++.+..+|++||+|+...++..++.+.+.|+.+.++..++..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 44555666666667776665 3333479999999999999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHHHhhcCCCchhhHHhhh-CCHHHHHHHhcc---------c-------ccHHHHHHHHHHHHHhhcCCC
Q 043950 122 SDDVREQAVWALGNVAADSPGCRNLVLRE-EALIPLLAQLNE---------H-------AKLSMLRIATWTLSKLCKGKP 184 (458)
Q Consensus 122 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~l~~~l~~---------~-------~~~~~~~~a~~~l~~l~~~~~ 184 (458)
+.++.-...+.|--++...+..+..+.+. +++..+...+.. . .+......++..+.|+....+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 67888888888888887777766655554 666666665531 0 134456677888889887764
Q ss_pred CCCh----hhhhhhHHHHHHhh---cC--CChHHHHHHHHHHHHhccCChhh-----------HHHHHHhCcHHHHHHHh
Q 043950 185 QPPF----DQVRPALPALAQLI---HL--DDEEVLSDACWTLSYLSYGTNDK-----------IQVVIEAGVCRRLVELL 244 (458)
Q Consensus 185 ~~~~----~~~~~~l~~l~~ll---~~--~~~~~~~~~~~~l~~l~~~~~~~-----------~~~~~~~~~i~~L~~ll 244 (458)
.... .....++..+..++ .+ +.......++.+|.|+--..... .........+..|+.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 4332 22244444444442 11 22456677777777773111110 00011223556666665
Q ss_pred CC-----CC---ccchhhHHHHHhHhhcCChhhHHHHHh----------------cCChHHHHHHhccCChhhHHHHHHH
Q 043950 245 GH-----PS---PSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHNHKKSIKKVACW 300 (458)
Q Consensus 245 ~~-----~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~ll~~~~~~~v~~~a~~ 300 (458)
.. .. .......+.+|.+++..+...++.+.. ..+-..|+.++.++ .+.+|..++.
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 43 11 234556777888888766555444432 24667789999998 6999999999
Q ss_pred HHHHhhcCCHHHHHHHHHcCChHHHHHHh
Q 043950 301 TISNITAGNREQIQAVIDAGLIVPLVNVL 329 (458)
Q Consensus 301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll 329 (458)
.+..+|..+ ...+++.-+...-..+|
T Consensus 331 llf~Lc~~d---~~~~v~~~GyG~AaG~L 356 (446)
T PF10165_consen 331 LLFVLCKED---ASRFVKYVGYGNAAGFL 356 (446)
T ss_pred HHHHHHhhh---HHHHHHHcCchhHHHHH
Confidence 999998543 34444433333333333
No 114
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.22 E-value=0.00036 Score=64.10 Aligned_cols=249 Identities=24% Similarity=0.272 Sum_probs=169.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
..++.+.+++.+.+ ..++..+++.++.+... ..++.+..++.+.++.+|..++.+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~------- 103 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGD------- 103 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------
Confidence 46889999999997 89999999997776652 458999999999999999999998888721
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCh------------HHHHHH
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDE------------EVLSDA 213 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~------------~~~~~~ 213 (458)
...++.++..+..+.+..++..+.++|..+-.. ..+..++..+.+... .++..+
T Consensus 104 ----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ----PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 125788999996578889999999999998653 235566666665542 234444
Q ss_pred HHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh
Q 043950 214 CWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS 293 (458)
Q Consensus 214 ~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 293 (458)
...++.+- +...++.+...+.+....++..+..+++.+...+ ..+.+.+...+.++ +..
T Consensus 170 ~~~l~~~~-----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELG-----------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcC-----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 44444332 2234567777788877788888888888876544 23456677777777 888
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 294 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 373 (458)
+|..++.+++.+-... .+..++..+.+.+..++..+..++...- .. .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence 8888888888774321 4566777777777776666555555110 00 11333444455
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 043950 374 CVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 374 ~~~~~v~~~~~~~l~~l~ 391 (458)
+.+..++..+...+..+.
T Consensus 286 ~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 286 DEANAVRLEAALALGQIG 303 (335)
T ss_pred cchhhHHHHHHHHHHhhc
Confidence 555556655555555443
No 115
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0046 Score=61.46 Aligned_cols=339 Identities=17% Similarity=0.132 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhc------CCC-CHHHHHHHHHHHHHHcC---CChhhHHHHHhCC
Q 043950 40 QLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM------RED-YPQLQYEAAWALTNIAS---GTSMNTNVVIDHG 109 (458)
Q Consensus 40 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~~~-~~~i~~~a~~~L~~l~~---~~~~~~~~~~~~~ 109 (458)
..+|...+..+++..+.+.. .++++.++..+. .++ ++.-..-|++++++++. .....+ ..++.-
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~f 462 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYF 462 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHH
Confidence 34556666666554322222 256777777776 222 24566778888888875 112222 222333
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCC--
Q 043950 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPP-- 187 (458)
Q Consensus 110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-- 187 (458)
+++.+...++++.-.+|..|+|+++.++..+-..... -..++....+.+.++++-.++..|+.+|..+.++.+...
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 4566667778888999999999999998543222222 233677777788668888899999999999998864332
Q ss_pred -hhhhhhhHHHHHHhhcCCChHHHHHHHHHH-HHhccCChhhHHHHHHhCcHHHHHHHhCC---CCccc---hhhHHHHH
Q 043950 188 -FDQVRPALPALAQLIHLDDEEVLSDACWTL-SYLSYGTNDKIQVVIEAGVCRRLVELLGH---PSPSV---LTPALWTV 259 (458)
Q Consensus 188 -~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~---~~~a~~~l 259 (458)
...+.+.++.+..+.+.-+.+....++..+ +..+..-......+.+ .+...+.+++.+ .++.. ...|.++|
T Consensus 541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 233356666666676665555555555443 3333221111221222 355666777764 22222 22333333
Q ss_pred hHhh------cCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950 260 GNIV------MGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE 333 (458)
Q Consensus 260 ~~l~------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 333 (458)
..+. ...++..+. ++..+++.+-.+|++. -.++-++++..+.++....++--..++. +++.+.+.+....
T Consensus 620 ~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~ 695 (1010)
T KOG1991|consen 620 RTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDG 695 (1010)
T ss_pred HHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhh
Confidence 3332 122323222 2345677777777777 6777788888887776544333333444 7788888888888
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh----hccC---CCHHHHHHHHHHHHHHHHhch
Q 043950 334 FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD----LLLC---VDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~----ll~~---~~~~v~~~~~~~l~~l~~~~~ 395 (458)
.+.-...+-+|-|.+..+...... .......+.+ ++.+ .+++ ...+++++..++-...
T Consensus 696 ~dyf~d~~~~l~N~vt~g~~~~~s---~~~y~~il~~i~~~~l~~e~~~D~d-~~~a~kLle~iiL~~k 760 (1010)
T KOG1991|consen 696 IDYFTDMMPALHNYVTYGTPSLLS---NPDYLQILLEIIKKVLTSENGEDSD-CESACKLLEVIILNCK 760 (1010)
T ss_pred HHHHHHHHHHHhhheeeCchhhhc---cchHHHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHhc
Confidence 888888999999998877543321 1222333333 3333 2333 3456777777665433
No 116
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.20 E-value=6.1e-05 Score=75.42 Aligned_cols=298 Identities=18% Similarity=0.129 Sum_probs=184.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhc---CCCch
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAA---DSPGC 143 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~---~~~~~ 143 (458)
+++.+...+.+-...+.+..|+..|..++....+ ...=..++|.++.++.++..+||..|+.+|..+.. +-+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3556666665544467789999999888872211 11112568999999999999999999999887763 22222
Q ss_pred hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHH-----HHHhhcCCChHHHHHHHHHHH
Q 043950 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA-----LAQLIHLDDEEVLSDACWTLS 218 (458)
Q Consensus 144 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~-----l~~ll~~~~~~~~~~~~~~l~ 218 (458)
...+...-.+|.|-.++.++....++...+..|..|+... .+++.. ...+++..+.+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--------~rFle~~q~~~~~g~~n~~nse---------- 561 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--------YRFLELTQELRQAGMLNDPNSE---------- 561 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--------HHHHHHHHHHHhcccccCcccc----------
Confidence 2223222344444444433344445555556666665321 111111 11123333322
Q ss_pred Hhc-cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950 219 YLS-YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV 297 (458)
Q Consensus 219 ~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~ 297 (458)
... ...+...+.+. .++-+....++.++++-|++.-+..|.-||..-.... -+.-+++.|+..|++. |+.+|..
T Consensus 562 t~~~~~~~~~~~~L~-~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDk-Dw~LR~a 636 (1431)
T KOG1240|consen 562 TAPEQNYNTELQALH-HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDK-DWRLRGA 636 (1431)
T ss_pred cccccccchHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCc-cHHHHHH
Confidence 011 11111222222 2345566777887787888888888888875332111 1234788899999999 9999887
Q ss_pred HHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC
Q 043950 298 ACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV 375 (458)
Q Consensus 298 a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~ 375 (458)
-...|.-++. +.. -++..++|.|.+-|.++.+-|...|+.++..|++.+- .+...-...++....+|-++
T Consensus 637 FfdsI~gvsi~VG~r-----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hP 708 (1431)
T KOG1240|consen 637 FFDSIVGVSIFVGWR-----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHP 708 (1431)
T ss_pred HHhhccceEEEEeee-----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCc
Confidence 7777775553 211 1234588999999999999999999999999998642 22222223566667788899
Q ss_pred CHHHHHHHHHHHHHHHHhchhhc
Q 043950 376 DPKIVTVCLEGLENILKVGEAEK 398 (458)
Q Consensus 376 ~~~v~~~~~~~l~~l~~~~~~~~ 398 (458)
+.-++..++..|..+.+.....+
T Consensus 709 N~WIR~~~~~iI~~~~~~ls~ad 731 (1431)
T KOG1240|consen 709 NLWIRRAVLGIIAAIARQLSAAD 731 (1431)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999988877665544
No 117
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=0.00022 Score=70.33 Aligned_cols=351 Identities=15% Similarity=0.110 Sum_probs=218.2
Q ss_pred hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC------------------
Q 043950 19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY------------------ 80 (458)
Q Consensus 19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~------------------ 80 (458)
....+.+|.+.++...+..+++..|...+..+...-+.+. . ....+.+.+++...++.+
T Consensus 272 ~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~ 348 (759)
T KOG0211|consen 272 IVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG 348 (759)
T ss_pred HHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc
Confidence 3445667777777777777777777777776665432221 1 111234444444444431
Q ss_pred --------------------HHHHHHHHHHHHHHcC-CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950 81 --------------------PQLQYEAAWALTNIAS-GTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139 (458)
Q Consensus 81 --------------------~~i~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 139 (458)
.+.+..++.-...++. .+.+....+..+.++|.+-.+..+.+..++...+.....+..-
T Consensus 349 ~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~ 428 (759)
T KOG0211|consen 349 PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPI 428 (759)
T ss_pred cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCcc
Confidence 2333333332222222 1111222233445567777777777777777666555555432
Q ss_pred CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 043950 140 SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLS 218 (458)
Q Consensus 140 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~ 218 (458)
.+..+. -....+.++..+ ++..+.++.+..|.+..+-...+.. ........+|.+..+-....+.++..+++.+.
T Consensus 429 ~~k~~t---i~~llp~~~~~l-~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip 504 (759)
T KOG0211|consen 429 LPKERT---ISELLPLLIGNL-KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIP 504 (759)
T ss_pred CCcCcC---ccccChhhhhhc-chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHH
Confidence 221111 112345555555 7778889999998886665544332 33344778888888888888999999999988
Q ss_pred HhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950 219 YLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKV 297 (458)
Q Consensus 219 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~ 297 (458)
.++.... .. +.+...-+.+...+.+...+++..|...+..++.... ++. ....++.++.+...+ +...|..
T Consensus 505 ~la~q~~--~~-~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~-~y~~R~t 576 (759)
T KOG0211|consen 505 QLALQLG--VE-FFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA----RLEEIPKLLAMDLQD-NYLVRMT 576 (759)
T ss_pred HHHHhhh--hH-HhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh----HHHhhHHHHHHhcCc-ccchhhH
Confidence 8874433 22 4444455556666666677899999998888876433 111 124677788887776 7888888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCH
Q 043950 298 ACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP 377 (458)
Q Consensus 298 a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 377 (458)
.+.++.-++.- .-+.+....++|.+.++..+..+.||..++..|..+...-... ..+..+.+.+..+.++++.
T Consensus 577 ~l~si~~la~v---~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~----~~~~~v~pll~~L~~d~~~ 649 (759)
T KOG0211|consen 577 TLFSIHELAEV---LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDES----VRDEEVLPLLETLSSDQEL 649 (759)
T ss_pred HHHHHHHHHHH---hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchH----HHHHHHHHHHHHhccCccc
Confidence 88888877741 1123334458899999999999999999999999997654433 2344456666667777888
Q ss_pred HHHHHHHHHHHHHH
Q 043950 378 KIVTVCLEGLENIL 391 (458)
Q Consensus 378 ~v~~~~~~~l~~l~ 391 (458)
+++..+..+...+.
T Consensus 650 dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 650 DVRYRAILAFGSIE 663 (759)
T ss_pred chhHHHHHHHHHHH
Confidence 88888777766554
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.13 E-value=4.7e-05 Score=65.66 Aligned_cols=189 Identities=16% Similarity=0.112 Sum_probs=119.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC-CCccHHHHHHc--CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950 33 WSDDNSLQLEATTQFRILLSIE-RSPRIEDVIQA--GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG 109 (458)
Q Consensus 33 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~--~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~ 109 (458)
.+.+...+..|+..|..++.+. .......+.+. .++..+...+.+.. ..+...|+.++..++.......+..+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 5678999999999999998764 12222222221 56677778888777 68899999999998874333333332 25
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC-CCh
Q 043950 110 AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ-PPF 188 (458)
Q Consensus 110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~ 188 (458)
++|.|+..+.++...+++.|..+|..++...+.... .+..++.....+.++.++..++..+..+....+. ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 689999999999999999999999999876541111 2234444444888999999999999888776541 111
Q ss_pred ----hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHH
Q 043950 189 ----DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQ 229 (458)
Q Consensus 189 ----~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 229 (458)
.....+.+.+...+.+.+++++..+-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 11356888899999999999999999999888755444443
No 119
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0066 Score=60.37 Aligned_cols=399 Identities=13% Similarity=0.094 Sum_probs=188.7
Q ss_pred ccHHHHHHhhc------C--CCHHHHHHHHHHHHHHhcCC-CCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 043950 23 EILPAMVAGVW------S--DDNSLQLEATTQFRILLSIE-RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTN 93 (458)
Q Consensus 23 ~~i~~l~~~l~------~--~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~ 93 (458)
+.++-+++.++ . .++.....|++.+..+++.- +....+...+.=+++.++..++++. -.+|..|||+++.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHH
Confidence 34555566666 2 23444555666666665321 1233334445556777777888888 7999999999999
Q ss_pred HcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhh--hCCHHHHHHHhcccccHHHHH
Q 043950 94 IASGTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLR--EEALIPLLAQLNEHAKLSMLR 170 (458)
Q Consensus 94 l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~l~~~l~~~~~~~~~~ 170 (458)
++.. +..+...-..++....+.+. +..-.++-.|+.+|..+..+.+.....+.. .+.++.++.+.+ ..+.+...
T Consensus 489 ~~~~--df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~n-e~End~Lt 565 (1010)
T KOG1991|consen 489 FSSI--DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSN-EVENDDLT 565 (1010)
T ss_pred HHhc--cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHH-hcchhHHH
Confidence 9952 22222222244566666665 677788888999999998776654332222 123444444442 22222222
Q ss_pred HHHH-HHHHhhcCCCCCChhhhhhhHHHHHHhhcC---C---ChHHHHHHHHHHHHhc------cCChhhHHHHHHhCcH
Q 043950 171 IATW-TLSKLCKGKPQPPFDQVRPALPALAQLIHL---D---DEEVLSDACWTLSYLS------YGTNDKIQVVIEAGVC 237 (458)
Q Consensus 171 ~a~~-~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~---~~~~~~~~~~~l~~l~------~~~~~~~~~~~~~~~i 237 (458)
.+.. .++.++..-..-.......+.....+++.. . +.+-...|..+|..+. ...++..+ -++.-++
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l 644 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVL 644 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 2222 233333332222333334444555555552 1 1222223333333322 11111111 1122234
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC------------------hhhHHH---
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH------------------KKSIKK--- 296 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~v~~--- 296 (458)
+.+-..+++.-.++-+.++.....+....++..-.+. ++++.+.+.++... .+.+..
T Consensus 645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~ 722 (1010)
T KOG1991|consen 645 PVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD 722 (1010)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence 4444444444444445555555444433322211111 11222222221110 111111
Q ss_pred --HHHHHHHHhhcCC----HHHH-------HHH-HHcC-----ChHHHHHHh----cc--CChhhHHHHHHHHHHhhcCC
Q 043950 297 --VACWTISNITAGN----REQI-------QAV-IDAG-----LIVPLVNVL----QD--AEFDIKKEAALAIANATVRG 351 (458)
Q Consensus 297 --~a~~~l~nl~~~~----~~~~-------~~l-~~~~-----~~~~L~~ll----~~--~~~~~~~~a~~~L~~l~~~~ 351 (458)
..++.+...+..+ ...+ ..+ .+.+ .+|.++++. .. ++...+..++....|.....
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyyn 802 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYN 802 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 1122222111100 0000 111 1222 255555543 22 46677888888888887777
Q ss_pred CHHHHHHHHHCCChHHHHhhccC-----CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh
Q 043950 352 THEQIKYLVREGCIKPLCDLLLC-----VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL 426 (458)
Q Consensus 352 ~~~~~~~l~~~~~l~~L~~ll~~-----~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 426 (458)
.......+-+.|....+..+.-+ ....=++.|+-+|..++..++..+. ...... +..+.+..|
T Consensus 803 P~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~-----------~~e~l~-~l~~~lv~L 870 (1010)
T KOG1991|consen 803 PKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQL-----------PSEVLG-QLGPALVEL 870 (1010)
T ss_pred cHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCc-----------hHHHHH-HHHHHHHHH
Confidence 77777887788877665554332 1111234466667777766533221 222211 446677777
Q ss_pred hcCCChHHHHHHHH
Q 043950 427 KSHDNNGIREKAVK 440 (458)
Q Consensus 427 ~~~~~~~v~~~a~~ 440 (458)
..+--..++.+|..
T Consensus 871 ~~~Lp~ala~ra~~ 884 (1010)
T KOG1991|consen 871 LLSLPEALAERAQV 884 (1010)
T ss_pred HHHHHHHHHHHHHh
Confidence 66654555555444
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.06 E-value=1.6e-05 Score=56.80 Aligned_cols=87 Identities=30% Similarity=0.452 Sum_probs=69.7
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950 68 VPRFVEFL-MREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL 146 (458)
Q Consensus 68 i~~L~~ll-~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 146 (458)
++.|++.+ ++++ +.+|..++++|+.+.. + ..++.|..+++++++.+|..++++|+.+.
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899999 6666 8999999999995432 2 33899999999999999999999999883
Q ss_pred HhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 147 VLREEALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 147 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
....++.+.+.+.++.+..++..+.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 22378899999977677777888888774
No 121
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.0014 Score=61.06 Aligned_cols=285 Identities=14% Similarity=0.095 Sum_probs=160.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 147 (458)
.|.|-.-+++.- +.+..++++.++.++..+ .....++ ..+..|-.+|.++....|-.|+++|..++...|.....
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v- 340 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV- 340 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee-
Confidence 344444455554 688999999999888743 1222222 34788888999999999999999999999887753211
Q ss_pred hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcC---CChHHHHHHHHHHHHhccCC
Q 043950 148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHL---DDEEVLSDACWTLSYLSYGT 224 (458)
Q Consensus 148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~---~~~~~~~~~~~~l~~l~~~~ 224 (458)
.+ .-+..|+ .+.+.. -+.+++..|........ +..++..+..++.+ +-.-+...+++.|+..-
T Consensus 341 cN-~evEsLI----sd~Nr~---IstyAITtLLKTGt~e~---idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F--- 406 (898)
T COG5240 341 CN-KEVESLI----SDENRT---ISTYAITTLLKTGTEET---IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF--- 406 (898)
T ss_pred cC-hhHHHHh----hccccc---chHHHHHHHHHcCchhh---HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---
Confidence 11 1133332 333333 34455555554433222 33344444444443 33344445555554433
Q ss_pred hhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950 225 NDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTIS 303 (458)
Q Consensus 225 ~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~ 303 (458)
+..... .+..|...|.. +..+.+..+..+++......|+.... .++.|...+.+. +..+.+..+|+
T Consensus 407 p~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDc---ey~~I~vrIL~ 473 (898)
T COG5240 407 PSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDC---EYHQITVRILG 473 (898)
T ss_pred cHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhc---chhHHHHHHHH
Confidence 322221 23444444433 45667778888888887766655443 456677777654 23334444444
Q ss_pred HhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHH
Q 043950 304 NITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVC 383 (458)
Q Consensus 304 nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~ 383 (458)
-+....|..-. -...+..+..-+--++.-+|..|..||..+....+... ....+...|-+++.++|++|+..|
T Consensus 474 iLG~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----~~~sv~~~lkRclnD~DdeVRdrA 546 (898)
T COG5240 474 ILGREGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----SPQSVENALKRCLNDQDDEVRDRA 546 (898)
T ss_pred HhcccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----cHHHHHHHHHHHhhcccHHHHHHH
Confidence 44431111000 00123334443444577888888899988876543222 223345667788888888999888
Q ss_pred HHHHHHHH
Q 043950 384 LEGLENIL 391 (458)
Q Consensus 384 ~~~l~~l~ 391 (458)
..++.++=
T Consensus 547 sf~l~~~~ 554 (898)
T COG5240 547 SFLLRNMR 554 (898)
T ss_pred HHHHHhhh
Confidence 87777653
No 122
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0015 Score=58.70 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=164.5
Q ss_pred hHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC----CCcc----HHHHHHcCCHHHHHHhhcCCC-----CHHHHH
Q 043950 19 QTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIE----RSPR----IEDVIQAGVVPRFVEFLMRED-----YPQLQY 85 (458)
Q Consensus 19 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~----~~~~----~~~~~~~~~i~~L~~ll~~~~-----~~~i~~ 85 (458)
--..++++.++++|.+++.++....+..+..+...+ +.+. ...+++.++++.|++-+..-+ .-.-..
T Consensus 121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 345678999999999999999999999999885432 1222 566778899999998876433 012346
Q ss_pred HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc--
Q 043950 86 EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-- 161 (458)
Q Consensus 86 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-- 161 (458)
.++..+-|+..-.+.....+++.|.+.-|+.-+.. +...-...|..+++-+..++...+..+-..+++..+++.+.
T Consensus 201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y 280 (536)
T KOG2734|consen 201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence 67788899998888999999999888887774433 44556678888998888888777777777888998888874
Q ss_pred --cc----ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh--hhHHHHHH
Q 043950 162 --EH----AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN--DKIQVVIE 233 (458)
Q Consensus 162 --~~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~ 233 (458)
++ ...++.++...+|+.+.....+........+++.+.-+++. ....+..++.+|-....+++ .....+++
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe 359 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVE 359 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 12 23568888888888888776555555556777766666665 55667778888888876655 44555777
Q ss_pred hCcHHHHHHHhC
Q 043950 234 AGVCRRLVELLG 245 (458)
Q Consensus 234 ~~~i~~L~~ll~ 245 (458)
..++..++.+.-
T Consensus 360 ~lGLrtiF~~FM 371 (536)
T KOG2734|consen 360 ILGLRTIFPLFM 371 (536)
T ss_pred HHhHHHHHHHHh
Confidence 777676665543
No 123
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.021 Score=57.54 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=115.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+.+..|.+.+++.|..++--|+..+.++.+... ..+.+ .++...+.++...+.+..=.-|+.+|+.++...--..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp----~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP----PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc----HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 457778888889999999999999999988753 22222 2455555555444434555688899999988422111
Q ss_pred HHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhcCCCch--hhHHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950 103 NVVIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNVAADSPGC--RNLVLREEALIPLLAQLNEHAKLSMLRIA 172 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a 172 (458)
..+ ..++|.+..-+.- ....+|..|+.+.+.+++..... .. +. ......++.....+.+...++.|
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHHH
Confidence 111 1345666665532 34689999999999998654321 11 11 11122222222256677788888
Q ss_pred HHHHHHhhcCCCCC----Chh-----------------------hhhhhHHHHH-Hh----hcCCChHHHHHHHHHHHHh
Q 043950 173 TWTLSKLCKGKPQP----PFD-----------------------QVRPALPALA-QL----IHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 173 ~~~l~~l~~~~~~~----~~~-----------------------~~~~~l~~l~-~l----l~~~~~~~~~~~~~~l~~l 220 (458)
..++-......++. ... ...+....++ ++ +.+=|..+++.+.++|..+
T Consensus 492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 88887665543211 000 0011122222 22 2245789999999999998
Q ss_pred ccCChh
Q 043950 221 SYGTND 226 (458)
Q Consensus 221 ~~~~~~ 226 (458)
+...++
T Consensus 572 s~~~pk 577 (1133)
T KOG1943|consen 572 SLTEPK 577 (1133)
T ss_pred HHhhHH
Confidence 855443
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.01 E-value=1.5e-05 Score=50.97 Aligned_cols=55 Identities=25% Similarity=0.517 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 292 KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 292 ~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
+.+|..|+|+|++++...++....... .+++.|+.++.+++..||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998877777776544 5999999999999999999999999875
No 125
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.98 E-value=0.0093 Score=56.34 Aligned_cols=300 Identities=16% Similarity=0.125 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCCcc----HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 36 DNSLQLEATTQFRILLSIERSPR----IEDVIQAGVVPRFVEFLMRED------YPQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 36 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~~~------~~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
+.......+..+..+........ .....+..+++.+.++..... ++.+...+..++..+...-+...+.-
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45566666777777665432222 223334457888877763321 13455555555555555333333222
Q ss_pred HhCCChHHHHHhhC----------CCC--HHHHHHHHHHHH-HhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHH
Q 043950 106 IDHGAVPIFVKLLA----------SPS--DDVREQAVWALG-NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIA 172 (458)
Q Consensus 106 ~~~~~i~~L~~ll~----------~~~--~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a 172 (458)
+ +..+..+.. ..+ .......+..+. -++.-++++.-. .....+..++.......++..+..+
T Consensus 136 ~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~ 210 (415)
T PF12460_consen 136 I----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAA 210 (415)
T ss_pred H----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHH
Confidence 2 222332221 011 011112222222 222222222110 1112566777777667778888888
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCChHHHHH----HHHHHHHhc-cCChhhHHHHHHhCcHHHHHHHhCC
Q 043950 173 TWTLSKLCKGKPQPPFDQVRPALPALAQLI-HLDDEEVLSD----ACWTLSYLS-YGTNDKIQVVIEAGVCRRLVELLGH 246 (458)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~----~~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~ 246 (458)
+.+++.+...-+... ....++..+..-+ ...+...+.. ..|+...+. ++++. . ..++..|+.++.+
T Consensus 211 ~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~-~-----~~~~~~L~~lL~~ 282 (415)
T PF12460_consen 211 LQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL-A-----TELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch-H-----HHHHHHHHHHhCC
Confidence 999988887632222 3445555555444 3333333333 444444443 22322 1 1356778888887
Q ss_pred CCccchhhHHHHHhHhhcCChh--------hHHHHHhc----CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHH
Q 043950 247 PSPSVLTPALWTVGNIVMGDDF--------QTQCIINH----GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ 314 (458)
Q Consensus 247 ~~~~~~~~a~~~l~~l~~~~~~--------~~~~~~~~----~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~ 314 (458)
+.+...+...++-+....+. ..+.+.+. .++|.+++..+.. +...|..-..+++++..+-|..+-
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHH
Confidence 55778888888888765322 22333333 3566777777766 556888889999999986654432
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950 315 AVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG 351 (458)
Q Consensus 315 ~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 351 (458)
.---..++|.+++.|..++.+++..++.+|..+....
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 2222458999999999999999999999999998865
No 126
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.98 E-value=0.0017 Score=63.57 Aligned_cols=314 Identities=12% Similarity=0.070 Sum_probs=188.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPI 113 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 113 (458)
++.|.....+.+++..+++.. .....+.. .++...+..+.-...+-++..|+++++..+. +..... ...+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-LQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-cchHHHHH
Confidence 455777778888888776542 11111211 2344555555544436788888888887774 221111 12366888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHHhhcCCCCCChhhhh
Q 043950 114 FVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-EHAKLSMLRIATWTLSKLCKGKPQPPFDQVR 192 (458)
Q Consensus 114 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 192 (458)
|.++....+.++-...+.+|+..+..+|+.... .+..+.|..+..+. .+.||.+...+-.++-.++.. ......+..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchHH
Confidence 888888888999999999999999888876443 34445555555543 567787777777777777653 222334557
Q ss_pred hhHHHHHHhhcCCC----hHHHHHHHHHHHHhccCCh-hhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCC
Q 043950 193 PALPALAQLIHLDD----EEVLSDACWTLSYLSYGTN-DKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGD 266 (458)
Q Consensus 193 ~~l~~l~~ll~~~~----~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~ 266 (458)
..+|.++..+..++ ......++..|..+.++.+ ...+.++.. .++.+.++.-+ ++......+-.||..+....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 88999999998766 5556666666665664433 233434433 67777777655 56677888899998888766
Q ss_pred hhhHHHHHhcCC------hHHHHHHhccCChhhHHHHHHHHHHHhhc----CCHHHHHHHHHcCChHH-HHHHhccCChh
Q 043950 267 DFQTQCIINHGA------VPCLLALLIHNHKKSIKKVACWTISNITA----GNREQIQAVIDAGLIVP-LVNVLQDAEFD 335 (458)
Q Consensus 267 ~~~~~~~~~~~~------~~~l~~ll~~~~~~~v~~~a~~~l~nl~~----~~~~~~~~l~~~~~~~~-L~~ll~~~~~~ 335 (458)
.++...--..++ +..+-.+| +++.-..++..++.+.. +-+..+....+. ++.. +.++-+.+...
T Consensus 692 ~eq~~t~~~e~g~~~~yImqV~sqLL----dp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~ls 766 (1005)
T KOG2274|consen 692 LEQLLTWHDEPGHNLWYIMQVLSQLL----DPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAETLS 766 (1005)
T ss_pred HHHHHhhccCCCccHHHHHHHHHHHc----CCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhhHH
Confidence 554433322222 33344444 33344455555555543 222222222221 2222 33344456788
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVR 361 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~ 361 (458)
+....+.+++++..........++..
T Consensus 767 viQsLi~VfahL~~t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 767 VIQSLIMVFAHLVHTDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 88889999999987654444444444
No 127
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.98 E-value=2.4e-05 Score=55.94 Aligned_cols=87 Identities=29% Similarity=0.441 Sum_probs=70.6
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950 195 LPALAQLI-HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI 273 (458)
Q Consensus 195 l~~l~~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 273 (458)
+|.+++.+ +++++.++..++++++.+- +...++.|..+++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 8899999999999999542 1135789999999999999999999999873
Q ss_pred HhcCChHHHHHHhccCChhhHHHHHHHHHH
Q 043950 274 INHGAVPCLLALLIHNHKKSIKKVACWTIS 303 (458)
Q Consensus 274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~ 303 (458)
+...++.|.+++.++.+..+|..|.++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 13478899999988756677999998875
No 128
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0049 Score=55.62 Aligned_cols=222 Identities=16% Similarity=0.085 Sum_probs=161.7
Q ss_pred hhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh---------hhHHHHHHhCcHHHHHHHhCCCCccchh------hH
Q 043950 191 VRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN---------DKIQVVIEAGVCRRLVELLGHPSPSVLT------PA 255 (458)
Q Consensus 191 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~~~~~~~------~a 255 (458)
.-.+++.++.+|.+++.++....+..+..++..+. ..+..+++.++++.|+..+..-+++++. .+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 36788999999999999999999999988874321 3456678889999999998875555544 45
Q ss_pred HHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc---c
Q 043950 256 LWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ---D 331 (458)
Q Consensus 256 ~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~---~ 331 (458)
+..+-|+....+.......+.|.+..|++-+... .-..-+..|..+++-+...+.++...+-.-.++..+++-+. .
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 7778888888888888888889998888855433 23456677777787777766566666667777887777653 2
Q ss_pred C------ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCC
Q 043950 332 A------EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIG 405 (458)
Q Consensus 332 ~------~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 405 (458)
. ..+...+...+||.+.. .+.....+....+++...-+++. ....+..++++|...+...+.
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~g--------- 350 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEG--------- 350 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCc---------
Confidence 2 34567788888888876 44666777777777766555555 445567788888877765443
Q ss_pred chhHHHHHHHhcchHHHHHhh
Q 043950 406 DVNQYARLVEEDEGFKKIEGL 426 (458)
Q Consensus 406 ~~~~~~~~~~~~~~~~~l~~l 426 (458)
.+++..|.+.+|++.+-.+
T Consensus 351 --t~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 351 --TPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred --hHHHHHHHHHHhHHHHHHH
Confidence 2357888888888888866
No 129
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.0079 Score=61.05 Aligned_cols=237 Identities=13% Similarity=0.032 Sum_probs=144.0
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950 155 PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP--PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI 232 (458)
Q Consensus 155 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 232 (458)
.+.....++.+..++..+...|..++..++.. .......+...+..-+++.+...+...+.++..+.+..+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 44455546668889999999999999873211 1122244555566666777788888888888888865552223233
Q ss_pred HhCcHHHHHHHhCCCCccchhhHHHHHhHhhc-------CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVM-------GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~-------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
.. .++-++-.++..+...++.|..+|-.++. +++. ....+ +.+++.+...+..+ ...+......++..+
T Consensus 737 ~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 PK-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred HH-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 33 34444444477788888888888887773 0111 01111 12333333333333 333333224444444
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHH
Q 043950 306 TAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE 385 (458)
Q Consensus 306 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~ 385 (458)
..........-.-.+++..+...|.+..++++..|+.++.-++...+....... ...+++.+..+.+....+++.++-.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~-~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPH-LEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhh-HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 431111111111224566777778899999999999999999987665544332 2236778888888778889888888
Q ss_pred HHHHHHHhchh
Q 043950 386 GLENILKVGEA 396 (458)
Q Consensus 386 ~l~~l~~~~~~ 396 (458)
++..+++...-
T Consensus 892 LlekLirkfg~ 902 (1176)
T KOG1248|consen 892 LLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHhCH
Confidence 88888775443
No 130
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.93 E-value=9.1e-05 Score=53.18 Aligned_cols=95 Identities=19% Similarity=0.305 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950 294 IKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 294 v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 373 (458)
.|+.+.++|+.++.+-+.......+ .++++++..+.+++.+||..|+.+|.|++.....+...++- .+++.|..+..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence 3667888888887654444554444 38999999999999999999999999999865544444433 37888888999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 043950 374 CVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 374 ~~~~~v~~~~~~~l~~l~~ 392 (458)
++++.|+..| ..|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999987665 77777765
No 131
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00077 Score=64.45 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=106.9
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHH--hccCChhhHHHHHHhCcHHHHHHH-hCCCCccchhhHHHHHhHhhcCChhh
Q 043950 193 PALPALAQLIHLDDEEVLSDACWTLSY--LSYGTNDKIQVVIEAGVCRRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQ 269 (458)
Q Consensus 193 ~~l~~l~~ll~~~~~~~~~~~~~~l~~--l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~ 269 (458)
+.=+.+-+++.+.|+-++...+.++.- ....+ .+.+..|+.. +++.+.+||+.|.-+|+-++..+++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 444566678888888888877665532 22222 2455666666 56678999999999999998877644
Q ss_pred HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
.+..+.+|..+.++.||..++.+|+-.|.++... ..+..|-.+..+...-||+.|+.+++-+..
T Consensus 590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 6677888887779999999999999998754211 134444455556666789999998888876
Q ss_pred CCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950 350 RGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379 (458)
Q Consensus 350 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 379 (458)
..++..+..+ .++.+.+...+.+++++.
T Consensus 654 Q~t~~~~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 654 QQTEQLCPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred hcccccCchH--HHHHHHHHHHhhhhhhHH
Confidence 5443332221 234455556665555543
No 132
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.001 Score=60.43 Aligned_cols=225 Identities=17% Similarity=0.151 Sum_probs=124.2
Q ss_pred ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH
Q 043950 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL 285 (458)
Q Consensus 206 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l 285 (458)
.+......|.++.++...+-.....-.+.-.+..+..+-.+.+.-++..|.++++.+.-+........+-.+....+...
T Consensus 362 ~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~s 441 (728)
T KOG4535|consen 362 HPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMS 441 (728)
T ss_pred CCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHH
Confidence 34556667777777763322111000000111222222233444577788888887776555444544555667777777
Q ss_pred hccCChhhHHHHHHHHHHHhhc----C--CHH-HHHHHHHcCChHHHHHHhc---cCChhhHHHHHHHHHHhhcCCCH--
Q 043950 286 LIHNHKKSIKKVACWTISNITA----G--NRE-QIQAVIDAGLIVPLVNVLQ---DAEFDIKKEAALAIANATVRGTH-- 353 (458)
Q Consensus 286 l~~~~~~~v~~~a~~~l~nl~~----~--~~~-~~~~l~~~~~~~~L~~ll~---~~~~~~~~~a~~~L~~l~~~~~~-- 353 (458)
+.+. ...+|..++|+++|+.. + +++ ...++.- -.+..+++... ....+|+.++..+|+|+...-.+
T Consensus 442 l~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~ 519 (728)
T KOG4535|consen 442 LEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIE 519 (728)
T ss_pred hhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhh
Confidence 7777 78899999999999974 1 211 1112111 12333333332 23678999999999999753110
Q ss_pred HHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh-hcCCC
Q 043950 354 EQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL-KSHDN 431 (458)
Q Consensus 354 ~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~ 431 (458)
+........+.+..+....- ...-.|+=+++-+++|+++...-.- +.+.+.. ..+..|..| ..+.|
T Consensus 520 ~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l-------q~~~wA~-----~~F~~L~~Lv~~~~N 587 (728)
T KOG4535|consen 520 KPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL-------QTAPWAS-----QAFNALTSLVTSCKN 587 (728)
T ss_pred hccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc-------cCCCchH-----HHHHHHHHHHHHhcc
Confidence 00111122233333333322 2345788899999999998644310 1122222 236777776 56688
Q ss_pred hHHHHHHHHHHHH
Q 043950 432 NGIREKAVKILET 444 (458)
Q Consensus 432 ~~v~~~a~~~l~~ 444 (458)
-+|+-+|...+..
T Consensus 588 FKVRi~AA~aL~v 600 (728)
T KOG4535|consen 588 FKVRIRAAAALSV 600 (728)
T ss_pred ceEeehhhhhhcC
Confidence 8888777776643
No 133
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.016 Score=58.31 Aligned_cols=260 Identities=13% Similarity=0.107 Sum_probs=157.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCR 144 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~ 144 (458)
+++..|+..+++.+ ..++=.|++.++.++...|... + ..++...+.++.. .++..=..++.+|+.++...-..-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~L---a-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPEL---A-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHHH---H-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 67888888888888 6999999999999999766222 1 1345666665544 334555678889999985542222
Q ss_pred hHHhhhCCHHHHHHHhcc-------cccHHHHHHHHHHHHHhhcCCC-CCChhhhhhhHHH-HHHhhcCCChHHHHHHHH
Q 043950 145 NLVLREEALIPLLAQLNE-------HAKLSMLRIATWTLSKLCKGKP-QPPFDQVRPALPA-LAQLIHLDDEEVLSDACW 215 (458)
Q Consensus 145 ~~~~~~~~l~~l~~~l~~-------~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~-l~~ll~~~~~~~~~~~~~ 215 (458)
..+. .+++.+++.+.. +....++..|+++++.+++... .........+.+. +...+-+++-.++..|..
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2222 255666655532 2345789999999999988752 2222223333333 223444667778888887
Q ss_pred HHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH-hccCChhhH
Q 043950 216 TLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL-LIHNHKKSI 294 (458)
Q Consensus 216 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~~~~v 294 (458)
++....-.... . ..| + .++.....-....+.++...++.-....+..+..++ ..++.. +.+= |..+
T Consensus 494 AlqE~VGR~~n-~----p~G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGN-F----PHG-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCC-C----CCc-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHHH
Confidence 77665522111 0 011 1 112222222233455566666555555555544433 223322 4444 8899
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 295 KKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 295 ~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
|+.++|+|.+++...++ ....+.++++++...+.+...+.-+..+.+.++.
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 99999999998764443 3345688899998888888887776666666654
No 134
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.82 E-value=0.013 Score=55.68 Aligned_cols=230 Identities=14% Similarity=0.097 Sum_probs=150.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-----DYPQLQYEAAWALTNIASGTSMNTNVVIDH 108 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~ 108 (458)
..++.+..+|+++|+|++... ...+..+.+.|..+.+++.++.. + .++..-..++|.-++...+..+..+++.
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 567999999999999998875 66677888999999999999876 4 6889999999999988888888777765
Q ss_pred -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc-------
Q 043950 109 -GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH------- 163 (458)
Q Consensus 109 -~~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~------- 163 (458)
+++..+...+.. .+......++.++-|+....+.... -.....++.++..+...
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~ 199 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS 199 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence 677777776531 1334556677888888766544322 01233445554444321
Q ss_pred -ccHHHHHHHHHHHHHhhcCCC---------C---CChhhhhhhHHHHHHhhc----CC----ChHHHHHHHHHHHHhcc
Q 043950 164 -AKLSMLRIATWTLSKLCKGKP---------Q---PPFDQVRPALPALAQLIH----LD----DEEVLSDACWTLSYLSY 222 (458)
Q Consensus 164 -~~~~~~~~a~~~l~~l~~~~~---------~---~~~~~~~~~l~~l~~ll~----~~----~~~~~~~~~~~l~~l~~ 222 (458)
+......+++.+|.++--... . .........+..++.+|. .. -.+.....+.+|.+++.
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 233567777777777621110 0 000111334445555543 11 23677888888888887
Q ss_pred CChhhHHHHHH----------------hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC
Q 043950 223 GTNDKIQVVIE----------------AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD 266 (458)
Q Consensus 223 ~~~~~~~~~~~----------------~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 266 (458)
......+.+.. ..+-..|++++.++.+.++..+...+..+|..+
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 65433332221 135667888888877888888888888887543
No 135
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.77 E-value=2.3e-05 Score=50.14 Aligned_cols=55 Identities=27% Similarity=0.550 Sum_probs=46.3
Q ss_pred ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 249 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
+.+|..|+++|++++...+....... ..+++.|..+|.++ ++.||..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 35789999999999887777666543 57899999999988 779999999999975
No 136
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.75 E-value=0.0013 Score=51.37 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=104.9
Q ss_pred HHHHHHhCcHHHHHHHhCCCCc------cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHH
Q 043950 228 IQVVIEAGVCRRLVELLGHPSP------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACW 300 (458)
Q Consensus 228 ~~~~~~~~~i~~L~~ll~~~~~------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~ 300 (458)
...++..+++..|++++.++.. +....++.++..|..++ ......++..++..++...+... +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 4557888999999999988653 55666788888887643 34455666778889999888764 6789999999
Q ss_pred HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHH
Q 043950 301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKY 358 (458)
Q Consensus 301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 358 (458)
.|-+++..++...+.+.+.--++.|+..|+..+.+++.+++..+..+....+...++.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~ 140 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKE 140 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 9999998887777777777789999999999999999999999999988877665554
No 137
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0077 Score=58.10 Aligned_cols=339 Identities=12% Similarity=0.096 Sum_probs=170.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
-..+-+-|+++++-+|-..++.|+++ .. ++ ++ ...+|.+...|.+.+ .-+|..|..++..+-.... .
T Consensus 101 cna~RkDLQHPNEyiRG~TLRFLckL-kE--~E----Ll-epl~p~IracleHrh-sYVRrNAilaifsIyk~~~----~ 167 (948)
T KOG1058|consen 101 CNAYRKDLQHPNEYIRGSTLRFLCKL-KE--PE----LL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNFE----H 167 (948)
T ss_pred HHHHhhhccCchHhhcchhhhhhhhc-Cc--HH----Hh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhhh----h
Confidence 34555678888888888888888887 21 12 22 246888888888888 7888888888887766211 1
Q ss_pred HHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCC-----chhhHHhhhCC-H-HHHHHHhc--ccccHHHHHHHHH
Q 043950 105 VIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSP-----GCRNLVLREEA-L-IPLLAQLN--EHAKLSMLRIATW 174 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~~~-l-~~l~~~l~--~~~~~~~~~~a~~ 174 (458)
++. .+-..+-++|. ..++..+++|...|...-.... .+.+.+-..|. + ..+++++. -..+|..+..-..
T Consensus 168 L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~ 246 (948)
T KOG1058|consen 168 LIP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR 246 (948)
T ss_pred hcC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH
Confidence 111 11222333332 3455555555544433211000 00000000000 0 00111111 0122333333333
Q ss_pred HHHHhhcCC-CCCChhhhhhhHHHHHHhh-cCCChHHHHHHHHHHHHhcc-CChhhHHHHH--------------HhCcH
Q 043950 175 TLSKLCKGK-PQPPFDQVRPALPALAQLI-HLDDEEVLSDACWTLSYLSY-GTNDKIQVVI--------------EAGVC 237 (458)
Q Consensus 175 ~l~~l~~~~-~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~--------------~~~~i 237 (458)
++.++.... +....+.. + .+. -++++.....+..++..+.. .++.+...++ =.|.+
T Consensus 247 ~i~~lL~stssaV~fEaa-~------tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~ 319 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAA-G------TLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLI 319 (948)
T ss_pred HHHHHHhcCCchhhhhhc-c------eEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHH
Confidence 444333221 11100000 0 000 02334444444444433331 1111111110 12455
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV 316 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 316 (458)
-.+++.|.+++-+++..++.....|+.... +..-.+++..+.+.--. .+....+.|..-..++..++...++...
T Consensus 320 mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~--e~d~~~~yRqlLiktih~cav~Fp~~aa-- 395 (948)
T KOG1058|consen 320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE--ESDDNGKYRQLLIKTIHACAVKFPEVAA-- 395 (948)
T ss_pred HHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc--ccccchHHHHHHHHHHHHHhhcChHHHH--
Confidence 566778888888999999888877765332 11111111111110000 1121346678888888888876655433
Q ss_pred HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950 317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
.+++.|++.+.+.++..-...+..+.......+.- +...+..|+.-+. -...++...++|.++.++....
T Consensus 396 ---tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L------r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 396 ---TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL------RASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH------HHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 47889999999888877666666666665543211 1223555555554 2566788899999999988666
Q ss_pred hh
Q 043950 396 AE 397 (458)
Q Consensus 396 ~~ 397 (458)
+.
T Consensus 467 ~i 468 (948)
T KOG1058|consen 467 EI 468 (948)
T ss_pred HH
Confidence 43
No 138
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0066 Score=51.09 Aligned_cols=251 Identities=19% Similarity=0.255 Sum_probs=147.4
Q ss_pred HHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 27 AMVAGVW--SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 27 ~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
.+-+.|. +....-++.|+..|+++.... . +..+.+...+.. ...+...+.+|+.....
T Consensus 7 ~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~---~---------i~~i~ka~~d~s-~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 7 TIGNILVNKSQPLQNRFRALFNLRNLLGPA---A---------IKAITKAFIDDS-ALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHcCccHHHHHHHHHHHhhhccCChH---H---------HHHHHHhcccch-hhhccchhhhhhhhccc-------
Confidence 3334443 344566677887777774431 1 444444444443 45566677777766653
Q ss_pred HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 105 VIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
..++.|+..+.. ..+-+|..|..+|+.+. + +. .++.+-+.. +++-.++.+.+-.++..+-..
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHHh
Confidence 447777777664 44677777888888774 1 11 222233333 444455555555555544322
Q ss_pred C---------------CCCChhhhhhhHHHHHHhhcCCC-hH-HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC
Q 043950 183 K---------------PQPPFDQVRPALPALAQLIHLDD-EE-VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG 245 (458)
Q Consensus 183 ~---------------~~~~~~~~~~~l~~l~~ll~~~~-~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 245 (458)
. |... ...+-+..+...+.... +. -+..++..|.|+- .++ .+..+++-+.
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l~ 197 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGLA 197 (289)
T ss_pred hccccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhcc
Confidence 1 1111 11222444444443332 22 2456667776653 222 2445566677
Q ss_pred CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhcc-CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHH
Q 043950 246 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIH-NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVP 324 (458)
Q Consensus 246 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~ 324 (458)
.++.-.|..+.+++|.+-+. -.++.+.+.|.. ...+.||.+|+.+|+.++. ++ .++.
T Consensus 198 ~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~v 255 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEV 255 (289)
T ss_pred cchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHH
Confidence 77777889999999888531 246666666643 2367999999999999974 23 5667
Q ss_pred HHHHhccCChhhHHHHHHHHHHhh
Q 043950 325 LVNVLQDAEFDIKKEAALAIANAT 348 (458)
Q Consensus 325 L~~ll~~~~~~~~~~a~~~L~~l~ 348 (458)
|.+.+.++++-+++.+..+|--+-
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 888888888888888888776553
No 139
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00077 Score=61.26 Aligned_cols=302 Identities=16% Similarity=0.168 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-----ChhhHHHHHhCCCh
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG-----TSMNTNVVIDHGAV 111 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i 111 (458)
..++++++..|.-++..- .....+...+...+..-+.+.. +.++..++.++..+..+ .|+..+.-...|.+
T Consensus 269 s~~rle~~qvl~~~a~~~---~~~~~~~~~l~RvI~~~~~~~~-p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~f 344 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYF---SMTQAYLMELGRVICKCMGEAD-PSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPF 344 (728)
T ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccCCCCC-hHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccH
Confidence 557788888877776542 1222222334444455556666 89999999999887652 22222221222211
Q ss_pred HHHH------Hhh-CCCCHHHHHHHHHHHHHhhcCC----CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 112 PIFV------KLL-ASPSDDVREQAVWALGNVAADS----PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 112 ~~L~------~ll-~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
-.+. ... ++..+..+...+.++.++.... |+.++. ..+.+..-..++.+.-++..|..++..+.
T Consensus 345 w~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T-----~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyV 419 (728)
T KOG4535|consen 345 WTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT-----LCITFLLGCNDSKNRLVKAAASRALGVYV 419 (728)
T ss_pred HHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh-----hhHHHHhcccchHHHHHHHHHHhhceeEE
Confidence 1111 111 1233455667777787776322 111111 12222333323334445666677776666
Q ss_pred cCC-CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC----Chh---hHHHHHHhCcHHHHHHHhC---CCCc
Q 043950 181 KGK-PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG----TND---KIQVVIEAGVCRRLVELLG---HPSP 249 (458)
Q Consensus 181 ~~~-~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~----~~~---~~~~~~~~~~i~~L~~ll~---~~~~ 249 (458)
-++ ..........+...+...+.+..-..++.+.|+++|++.. .+. ....+.. -.+..+...-. ..+.
T Consensus 420 LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~d 498 (728)
T KOG4535|consen 420 LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKD 498 (728)
T ss_pred eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhh
Confidence 654 2223334466666666777777778899999999999832 111 1221111 12222322222 2467
Q ss_pred cchhhHHHHHhHhhcCChhh----HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHH-HHHHcCChHH
Q 043950 250 SVLTPALWTVGNIVMGDDFQ----TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQ-AVIDAGLIVP 324 (458)
Q Consensus 250 ~~~~~a~~~l~~l~~~~~~~----~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~-~l~~~~~~~~ 324 (458)
.++..+.++|+|+...-+.. ...+++ +-+..+....-.+...+||.++|++++|+.++..-..+ .=+...+++.
T Consensus 499 kV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 499 KVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 89999999999987432211 111111 11222222222222678999999999999974311011 0112336777
Q ss_pred HHHHhcc-CChhhHHHHHHHHHHhhc
Q 043950 325 LVNVLQD-AEFDIKKEAALAIANATV 349 (458)
Q Consensus 325 L~~ll~~-~~~~~~~~a~~~L~~l~~ 349 (458)
|..++.+ .+.++|.+|+.+|.--..
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCC
Confidence 7777754 589999999999876654
No 140
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.057 Score=53.50 Aligned_cols=167 Identities=17% Similarity=0.195 Sum_probs=121.2
Q ss_pred hCCCCHHHHHHHH-HHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043950 118 LASPSDDVREQAV-WALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALP 196 (458)
Q Consensus 118 l~~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 196 (458)
+.+.+...+..|+ .+++.+..+.+ ... .++.+++... ..|.++++-.-.-+..+....| ...--++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-mss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHH
Confidence 6665655555554 45666665543 211 4566777774 7788888877666666666554 33455666
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhc
Q 043950 197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH 276 (458)
Q Consensus 197 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 276 (458)
.+.+=++++++.+|..|+++++.+= ...+.. .+++.+.+++.++++.||+.|+.++..+-+.++.. .-+.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~------~~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~ 165 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLR------VKELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHEL 165 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcC------hHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcc
Confidence 7777888999999999999998773 222332 36789999999999999999999999997655533 3356
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 277 GAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
|.+..+..++.+. ++.|...|..++..+..
T Consensus 166 g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 166 GLIDILKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred cHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence 7888888888888 99999999999998864
No 141
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.59 E-value=0.00038 Score=49.93 Aligned_cols=67 Identities=15% Similarity=0.337 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCchhhHHhh
Q 043950 83 LQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAADSPGCRNLVLR 149 (458)
Q Consensus 83 i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 149 (458)
.+...+++|+|++..++...+.+.+.|+++.+++... ..+|-+++.|++++.|++.++++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999999654 478999999999999999999887776554
No 142
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.59 E-value=0.00071 Score=48.61 Aligned_cols=94 Identities=13% Similarity=0.174 Sum_probs=68.5
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ 330 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 330 (458)
.|..++.+|...+..-+......+ ..++++++..+.++ +++||..|+.++.|++......+...+ ..+++.|.+++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 356677778777665555544444 35899999999999 999999999999999974333332222 248888999999
Q ss_pred cCChhhHHHHHHHHHHhh
Q 043950 331 DAEFDIKKEAALAIANAT 348 (458)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~ 348 (458)
+.++.||..| ..|-++.
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 9999988655 6666654
No 143
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.57 E-value=0.00024 Score=42.10 Aligned_cols=39 Identities=36% Similarity=0.705 Sum_probs=35.6
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043950 99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 137 (458)
Q Consensus 99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 137 (458)
++.+..+.+.|+++.|++++.+++++++..++|+|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778889999999999999999999999999999986
No 144
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.53 E-value=0.035 Score=54.96 Aligned_cols=238 Identities=16% Similarity=0.112 Sum_probs=153.0
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950 73 EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREE 151 (458)
Q Consensus 73 ~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 151 (458)
..+.....|.+...+.+++...+.......... . ..+...+..+. +..+-++..|+++++..+.... +.. ...+
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~~p~ 530 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--LQPM 530 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--cchH
Confidence 334444447777788888887766322222111 1 12334444333 3556677778888887773221 111 1224
Q ss_pred CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChhhHH
Q 043950 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH--LDDEEVLSDACWTLSYLSYGTNDKIQ 229 (458)
Q Consensus 152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~ 229 (458)
++..++.+. ...+.++......+|+..+..+|.........+.|..+.++. ++||.+...+-.++-.++.... +..
T Consensus 531 ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g 608 (1005)
T KOG2274|consen 531 ILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG 608 (1005)
T ss_pred HHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc
Confidence 455555555 556677888899999999998877666667778887776554 6788777777777776664222 222
Q ss_pred HHHHhCcHHHHHHHhCCCC----ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 043950 230 VVIEAGVCRRLVELLGHPS----PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNI 305 (458)
Q Consensus 230 ~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl 305 (458)
.+ ....+|.++..|..+. .....-++.+|..+.+..+.-....+-.-.+|.+.++.-++.|......+..+|..+
T Consensus 609 ~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~ 687 (1005)
T KOG2274|consen 609 PM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRAL 687 (1005)
T ss_pred ch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHH
Confidence 12 2347899999998865 455666777888777766544444444567888888877765888999999999999
Q ss_pred hcCCHHHHHHHHH
Q 043950 306 TAGNREQIQAVID 318 (458)
Q Consensus 306 ~~~~~~~~~~l~~ 318 (458)
...+.++......
T Consensus 688 Is~~~eq~~t~~~ 700 (1005)
T KOG2274|consen 688 ISVTLEQLLTWHD 700 (1005)
T ss_pred HhcCHHHHHhhcc
Confidence 8876666555443
No 145
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.49 E-value=0.0065 Score=54.71 Aligned_cols=209 Identities=12% Similarity=0.070 Sum_probs=146.5
Q ss_pred HHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh-----HHHHHh--cCChHHHHHHhccCChhhHHHHHHHH
Q 043950 229 QVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-----TQCIIN--HGAVPCLLALLIHNHKKSIKKVACWT 301 (458)
Q Consensus 229 ~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-----~~~~~~--~~~~~~l~~ll~~~~~~~v~~~a~~~ 301 (458)
+.+...+.+..|+..|..-+-+.+..+..+.+++.+..... ...+.. ..++..|+.... ++++-..+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence 44667789999999999888889999999999998754322 334432 234444444443 44566666667
Q ss_pred HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH--CCChHHHHhhccCCCHHH
Q 043950 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR--EGCIKPLCDLLLCVDPKI 379 (458)
Q Consensus 302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~~~l~~L~~ll~~~~~~v 379 (458)
|..++.+ +.....++....+..+.+....++.++...|...+..+......-..+++.. ..++..+..++.+++.-+
T Consensus 147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 7777654 4667778888899999999999999999999999999877543333333332 135667778888999889
Q ss_pred HHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950 380 VTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 380 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
+..++++|+.++-.-.... -....+.+..-++.+..|+.+++..++-.|-.+..-|......
T Consensus 226 krqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred ehhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999999999997655432 1245555666788999999999999999998888776655443
No 146
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.006 Score=59.06 Aligned_cols=141 Identities=11% Similarity=0.086 Sum_probs=85.0
Q ss_pred hhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhH
Q 043950 192 RPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQT 270 (458)
Q Consensus 192 ~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~ 270 (458)
...+..+..+|+. +.-+.+.....++..+....++... .++..|...+.+.. ...-+.+.+.-+....+...
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~ 462 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAP 462 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCC
Confidence 3445555555554 2345566666666666654443332 23455566555433 44556666666654433221
Q ss_pred HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950 271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT 348 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 348 (458)
.....+..+....--. +..+|..|..++..+..+++... ..+...+.+.+.+.|.++|..|..++.++-
T Consensus 463 ---~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 ---NPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred ---CcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 1123344444444444 77899999999999985442221 235567788888999999999999999886
No 147
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.47 E-value=0.0062 Score=50.59 Aligned_cols=143 Identities=13% Similarity=0.153 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHcCCC-hhhHHHHHhCCChHH
Q 043950 39 LQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASGT-SMNTNVVIDHGAVPI 113 (458)
Q Consensus 39 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~ 113 (458)
-...|+..|..++++ ++....+.++.+=-.|-.+|... ..+-+|..++.+++.+...+ .+....+...+++|.
T Consensus 95 RVcnaL~LlQcvASH--pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 95 RVCNALALLQCVASH--PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred hHHHHHHHHHHHhcC--cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 334566666777776 67888888887766666666432 23578999999999998743 445566678899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-------hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 114 FVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-------EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 114 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
.++.+..+++..+..|..++..+..++....-.... ...+..++..+.+.+++.+.++++.+...|+.+.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999998776543222111 1234555566657788899999999999998773
No 148
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.13 Score=50.34 Aligned_cols=223 Identities=18% Similarity=0.181 Sum_probs=120.9
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh-
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM- 100 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~- 100 (458)
.+.+=.+.++.++.|...+...-.++..+..-. .+.. -+...+.+-....+ +..+..|++.|+.+..+..-
T Consensus 63 te~ff~~tKlfQskd~~LRr~vYl~Ikels~is-edvi------ivtsslmkD~t~~~-d~yr~~AiR~L~~I~d~~m~~ 134 (865)
T KOG1078|consen 63 TELFFAITKLFQSKDVSLRRMVYLAIKELSKIS-EDVI------IVTSSLMKDMTGKE-DLYRAAAIRALCSIIDGTMLQ 134 (865)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc-hhhh------hhhHHHHhhccCCC-cchhHHHHHHHHhhcCcchhH
Confidence 345667777888899999988888888774432 1111 12344444433344 57778888888887764321
Q ss_pred hHHHHHhCCChH--------HHH---HhhCC------------------CCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950 101 NTNVVIDHGAVP--------IFV---KLLAS------------------PSDDVREQAVWALGNVAADSPGCRNLVLREE 151 (458)
Q Consensus 101 ~~~~~~~~~~i~--------~L~---~ll~~------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 151 (458)
......++.++. +++ +++.. .+.-++.+++..|..+-..+. +
T Consensus 135 ~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr-----l---- 205 (865)
T KOG1078|consen 135 AIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR-----L---- 205 (865)
T ss_pred HHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH-----H----
Confidence 111111211111 111 11111 122334444444444421110 0
Q ss_pred CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHH
Q 043950 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVV 231 (458)
Q Consensus 152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 231 (458)
++..++..+..+.... ..|-|.+.......-...........+.+-..+.+....+...+.+++.++..........
T Consensus 206 a~sklv~~~~~~~~~~--~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p- 282 (865)
T KOG1078|consen 206 AVSKLVQKFTRGSLKS--PLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP- 282 (865)
T ss_pred HHHHHHHHHccccccc--hhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch-
Confidence 2233333332211000 1112222221111101112233566777888888999999999999999887555433222
Q ss_pred HHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChh
Q 043950 232 IEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDF 268 (458)
Q Consensus 232 ~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 268 (458)
.+..|-.+++++...+|-.|.++|..++...+.
T Consensus 283 ----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 283 ----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred ----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 567788888999999999999999999876654
No 149
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=0.01 Score=57.80 Aligned_cols=239 Identities=14% Similarity=0.079 Sum_probs=153.6
Q ss_pred hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhc
Q 043950 143 CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD-EEVLSDACWTLSYLS 221 (458)
Q Consensus 143 ~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~ 221 (458)
.+...++.|+...++.+. ....+.-+.....+|.. .. .-.......+++.+...+++.. ..-...++.++.|++
T Consensus 496 ~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~---~i-~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAG---KI-DFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred hcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhh---hc-CCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 344566778888898888 44455666666667762 10 1111122344444444443222 222346788899998
Q ss_pred cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHh-cCChHHHHHHhccCChhhHHHHHHH
Q 043950 222 YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN-HGAVPCLLALLIHNHKKSIKKVACW 300 (458)
Q Consensus 222 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~v~~~a~~ 300 (458)
..+....+.+.+...++.+-.++..+++..+..++..+.||..+..-....+.+ ...++.+...+... +.....+++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 776666666777777777778888889999999999999999866666666666 45666666666665 7777777777
Q ss_pred HHHHhhcCCHHHHHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950 301 TISNITAGNREQIQA-VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379 (458)
Q Consensus 301 ~l~nl~~~~~~~~~~-l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 379 (458)
++..++.....++.. ..-......+..++.+++.+++...+....|+ .....+....+.....+..+...-.-.-...
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~-~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~ 728 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL-FEALFEIAEKIFETEVMELLSGLQKLNRAPK 728 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH-HHHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence 777666543334332 22244778889999999999999999999995 4445566666666665555555444333333
Q ss_pred HHHHHHHHH
Q 043950 380 VTVCLEGLE 388 (458)
Q Consensus 380 ~~~~~~~l~ 388 (458)
+..+...|.
T Consensus 729 ~~~~~~~l~ 737 (748)
T KOG4151|consen 729 REDAAPCLS 737 (748)
T ss_pred hhhhhhHHH
Confidence 333333443
No 150
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0071 Score=61.38 Aligned_cols=232 Identities=15% Similarity=0.158 Sum_probs=147.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHH
Q 043950 121 PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197 (458)
Q Consensus 121 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 197 (458)
.+..+|..+...|..++.. +....... .-+..+.+.+. ++.+...+...+.++..+....+..........+|.
T Consensus 666 ~~~~vQkK~yrlL~~l~~~-~s~~~~~~--q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSS-PSGEGLVE--QRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcC-CchhhHHH--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5788999999999999876 22222211 12333333332 344556778888888888877664445556667777
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhC------cHHHHHHHhC----CCCccchhhHHHHHhHhhcCCh
Q 043950 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAG------VCRRLVELLG----HPSPSVLTPALWTVGNIVMGDD 267 (458)
Q Consensus 198 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~------~i~~L~~ll~----~~~~~~~~~a~~~l~~l~~~~~ 267 (458)
++-.++..+...+..+..+|..++. ++...+.| .+..++..+. .....+....+.++..+.....
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 6666688888999999998888872 11111222 3344444433 3333333333455555544322
Q ss_pred hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
.......-.++++.+..+|.++ .+++++.|...+..++...|+.+-.-....+++.+..++.+...+++..+-..|-.+
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 2222222245677788888888 999999999999999976555443333334788888888888888998888888888
Q ss_pred hcCCCHHHHHHHHH
Q 043950 348 TVRGTHEQIKYLVR 361 (458)
Q Consensus 348 ~~~~~~~~~~~l~~ 361 (458)
+.....+..+.+.+
T Consensus 897 irkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 897 IRKFGAEELESFLP 910 (1176)
T ss_pred HHHhCHHHHHhhCH
Confidence 77655555554444
No 151
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.41 E-value=0.0075 Score=49.46 Aligned_cols=93 Identities=17% Similarity=0.247 Sum_probs=74.1
Q ss_pred CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHH
Q 043950 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVN 327 (458)
Q Consensus 248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ 327 (458)
++.+|..++.+++.++...+...+ ..++.+...|.++ ++.||+.|..+++.+.....-. ++..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 356889999999999887765544 4688899999999 9999999999999998632111 11224467788
Q ss_pred HhccCChhhHHHHHHHHHHhhcC
Q 043950 328 VLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 328 ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
.+.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999876
No 152
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.41 E-value=0.0066 Score=54.69 Aligned_cols=202 Identities=14% Similarity=0.109 Sum_probs=139.1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchh-----hHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCR-----NLVLREEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
.+...+.+..|+..|..-+-+.|..+..++.++.+.....+ +.+.. ..-..+..++..-.++++.-.+...++.
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 34455888999999988889999999999999986654332 22222 1122222223233456666777777777
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh---CcHHHHHHHhCCCCccchhhH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA---GVCRRLVELLGHPSPSVLTPA 255 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~a 255 (458)
.++...-.........+-.+...+..++=++...+..++..+..........+... .++.....++.+++.-.++.+
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 77664323333336667778888889999999999999999776655555445544 467788899999999999999
Q ss_pred HHHHhHhhcCChh---hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 256 LWTVGNIVMGDDF---QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 256 ~~~l~~l~~~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
+..|+.+...... ..+.+-+..-+..++.+|+++ +..++.+|..++--++.
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 9999999864332 123333566799999999999 99999999999998886
No 153
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.40 E-value=0.00051 Score=40.60 Aligned_cols=38 Identities=32% Similarity=0.654 Sum_probs=34.1
Q ss_pred hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
+....+.+.|+++.|++++.++ ++++++.++|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence 3566777899999999999987 9999999999999986
No 154
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.35 E-value=0.012 Score=48.27 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCH-HHHHHH
Q 043950 81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEAL-IPLLAQ 159 (458)
Q Consensus 81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l-~~l~~~ 159 (458)
+.+|..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|.+|...+.. .-.|.+ ..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence 78999999999999986554443 3478999999999999999999999999755322 222333 677777
Q ss_pred hcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc
Q 043950 160 LNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH 203 (458)
Q Consensus 160 l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~ 203 (458)
+ .+++++++..|..++..+.... ........++.++..+.
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~~---~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKKR---NPNIIYNNFPELISSLN 111 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHh
Confidence 7 8889999999999999998763 12223444444444444
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.31 E-value=0.0023 Score=45.94 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=57.8
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHH
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVID 318 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~ 318 (458)
++...+.+|+|++..++.....+.+.++++.++....-+ .+|-+|+.|.|++.|++.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 466789999999999999999999999999998876533 37899999999999999999887665543
No 156
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.30 E-value=0.0013 Score=48.51 Aligned_cols=70 Identities=17% Similarity=0.270 Sum_probs=57.7
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHH
Q 043950 364 CIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442 (458)
Q Consensus 364 ~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l 442 (458)
++..|+.++. +.|+.+...|+.=|+.+++..+.. +..+.+.|+...+..|++|+|++|+..|...+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4777888884 557778888999999999987764 77788999999999999999999999999998
Q ss_pred HHhc
Q 043950 443 ETYW 446 (458)
Q Consensus 443 ~~~~ 446 (458)
+.+.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 157
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.23 E-value=0.038 Score=49.63 Aligned_cols=191 Identities=19% Similarity=0.174 Sum_probs=121.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--Chh
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVI--QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG--TSM 100 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~--~~~ 100 (458)
+...+..+.......|..++..+.+++... .....+. ...++..+.+.++.+. .+-+..|+++++-++-. ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCc
Confidence 556677777777999999999999998763 2223332 2346778888888887 56677787877776553 223
Q ss_pred hHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhc---CCCchhhHHhhhCCHHHHHH--Hhccc---------c
Q 043950 101 NTNVVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAA---DSPGCRNLVLREEALIPLLA--QLNEH---------A 164 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~~~l~~l~~--~l~~~---------~ 164 (458)
....+++ ...|.|.+.+.+. ...+|..++.+|+-++. ..+...... ...+..+.. ....+ +
T Consensus 122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCC
Confidence 3444444 4578888888763 45677777777776653 222211111 112332211 12111 2
Q ss_pred cHHHHHHHHHHHHHhhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 165 KLSMLRIATWTLSKLCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 165 ~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
++.+...|+.+.+-|....+.. ........+|.+..+|.+.|.+++..|-.+|.-+-
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3567777777766666554332 22445778999999999999999999988887664
No 158
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.22 E-value=0.015 Score=45.47 Aligned_cols=126 Identities=10% Similarity=0.144 Sum_probs=95.8
Q ss_pred HHHHHhcCChHHHHHHhccCCh-----hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHH
Q 043950 270 TQCIINHGAVPCLLALLIHNHK-----KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAAL 342 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~~-----~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~ 342 (458)
...+++.+++..++++++++.. ..+...+..++..+..+..-. ....+..++...+...+.. +..+...++.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vs-Wd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVS-WDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCc-hhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3567788999999999998732 255556666666666553211 2234445777788777654 6889999999
Q ss_pred HHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhh
Q 043950 343 AIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 343 ~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~ 397 (458)
.|-+++.+ ++.....+.++--++.|+..++..+++++..++..+..++...+..
T Consensus 83 ILEs~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999985 5566677777778999999999999999999999999999877654
No 159
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.20 E-value=0.067 Score=48.04 Aligned_cols=197 Identities=13% Similarity=0.110 Sum_probs=124.5
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHH--HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC--ChhhH
Q 043950 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVI--EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG--DDFQT 270 (458)
Q Consensus 195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~--~~~~~ 270 (458)
+...+..+.......|+.++..+.++..... ..+.+. ..-++..+.+.++.+...-+..|+.+++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4444555566668899999998888874432 112121 123677888888887666666777777776543 22334
Q ss_pred HHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhh---cCCHHHHHHHHHcCChHHHHH--Hhcc----------CCh
Q 043950 271 QCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNIT---AGNREQIQAVIDAGLIVPLVN--VLQD----------AEF 334 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~---~~~~~~~~~l~~~~~~~~L~~--ll~~----------~~~ 334 (458)
..+++ .+.|.|...+..+. ...+|..++.+|+-++ ....+.....++ .+..+.. ..+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44443 47788888887662 2356666665666554 334444442222 2221111 1211 135
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 335 DIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 335 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.+...|+.+++-++...+........ ...++.|..+|++++.+|+..|-.+|.-+++....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 68999999999888766554444433 24589999999999999999999999988887664
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.20 E-value=0.15 Score=48.90 Aligned_cols=296 Identities=13% Similarity=0.074 Sum_probs=149.3
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh
Q 043950 69 PRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL 148 (458)
Q Consensus 69 ~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 148 (458)
..++...+. + +..+.-|+..+.....+.|+..+.. +..++.+..+.+..+|.+|+..|..+|.+.++....
T Consensus 26 ~~il~~~kg-~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-- 96 (556)
T PF05918_consen 26 KEILDGVKG-S-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-- 96 (556)
T ss_dssp HHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH--
T ss_pred HHHHHHccC-C-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH--
Confidence 334444443 4 6889999999999999888877654 689999999999999999999999999987765333
Q ss_pred hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---CCChHHHHHHHHHHHHhc-cCC
Q 043950 149 REEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH---LDDEEVLSDACWTLSYLS-YGT 224 (458)
Q Consensus 149 ~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~-~~~ 224 (458)
+...|+++| ...++.-...+-++|..+...++ .+.+..+...+. +.++.+++.++..|..-. .-.
T Consensus 97 ---vaDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~ 165 (556)
T PF05918_consen 97 ---VADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK 165 (556)
T ss_dssp ---HHHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred ---HHHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence 355677777 56666556666677777665432 344444444443 678889999998775433 211
Q ss_pred hhhHH--HHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC----ChhhHHHHHhcCChHHHHHHh------ccCChh
Q 043950 225 NDKIQ--VVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG----DDFQTQCIINHGAVPCLLALL------IHNHKK 292 (458)
Q Consensus 225 ~~~~~--~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~----~~~~~~~~~~~~~~~~l~~ll------~~~~~~ 292 (458)
.+... .-.+.=++..+.+.|.+-...--...+.+|..+-.+ .....+.+ ++.+.+.. ... ++
T Consensus 166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~ 239 (556)
T PF05918_consen 166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DP 239 (556)
T ss_dssp TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SH
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CH
Confidence 11111 111222455566666653322223334444444331 22222322 23333222 112 33
Q ss_pred hHHHHHHHHHHH----hhc--CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChH
Q 043950 293 SIKKVACWTISN----ITA--GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIK 366 (458)
Q Consensus 293 ~v~~~a~~~l~n----l~~--~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~ 366 (458)
+.-.....++.. +.. ++.....++.+ .++|.+-++ +.+.+...+.+++.++..........+++ -++.
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence 332222222222 222 34455555555 377755555 45677788888888887654322222221 1223
Q ss_pred HHHhhccCC--CH----HHHHHHHHHHHHHHHhchh
Q 043950 367 PLCDLLLCV--DP----KIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 367 ~L~~ll~~~--~~----~v~~~~~~~l~~l~~~~~~ 396 (458)
.|..++-.. .+ ..++..+.++..+....++
T Consensus 314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 333333221 22 3456677777777766554
No 161
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.11 Score=44.03 Aligned_cols=203 Identities=21% Similarity=0.232 Sum_probs=131.8
Q ss_pred HHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q 043950 61 DVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAAD 139 (458)
Q Consensus 61 ~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 139 (458)
++.....+|.|+..+.+.+ .+.+|..|..+|+++.. + ..++.+-++.+++...+++.+..++..+-..
T Consensus 62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~ 130 (289)
T KOG0567|consen 62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWK 130 (289)
T ss_pred hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHh
Confidence 3344567999999887654 37889999999999884 2 4578888888778888888888887776522
Q ss_pred CCchh-----h--HH-----hhhCCHHHHHHHhcccccHHH-HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC
Q 043950 140 SPGCR-----N--LV-----LREEALIPLLAQLNEHAKLSM-LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD 206 (458)
Q Consensus 140 ~~~~~-----~--~~-----~~~~~l~~l~~~l~~~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~ 206 (458)
+.... . .+ ...+-+..+-..+.+.+.+.+ +..+.+.|+|+-. ...+..+..-+..+.
T Consensus 131 ~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~S 200 (289)
T KOG0567|consen 131 DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDS 200 (289)
T ss_pred hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccch
Confidence 11100 0 00 011224444444433333333 2234444544322 345566777777777
Q ss_pred hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHH
Q 043950 207 EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA 284 (458)
Q Consensus 207 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ 284 (458)
.-.+..+..+++.+-. + -.++.|.+.|.+ .++-+|..|+.+|+.++. + ..++.|.+
T Consensus 201 alfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e 258 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E---------DCVEVLKE 258 (289)
T ss_pred HHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H---------HHHHHHHH
Confidence 7888889999987742 1 235667777765 467799999999999874 2 24667788
Q ss_pred HhccCChhhHHHHHHHHHHHhhc
Q 043950 285 LLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 285 ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
.+..+ ++-|++.+..++...-.
T Consensus 259 ~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 259 YLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred HcCCc-HHHHHHHHHHHHHHHHH
Confidence 88877 88888888887776543
No 162
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.16 E-value=0.0088 Score=50.75 Aligned_cols=176 Identities=15% Similarity=0.164 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHcC-CChhhHHHHHhCCChHHHH
Q 043950 41 LEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED----YPQLQYEAAWALTNIAS-GTSMNTNVVIDHGAVPIFV 115 (458)
Q Consensus 41 ~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~----~~~i~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~L~ 115 (458)
..|+..|..++++ ++.+..+.++.+.-.|..+|...+ .+.+|..++.+++.+.. ++++....+.+.+++|..+
T Consensus 68 cnaLaLlQ~vAsh--petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcL 145 (262)
T PF04078_consen 68 CNALALLQCVASH--PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCL 145 (262)
T ss_dssp HHHHHHHHHHHH---TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHcC--hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHH
Confidence 3466666677776 788889999988777888886543 24688999999999987 3456677788899999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhcCCCchhh-------HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCCh
Q 043950 116 KLLASPSDDVREQAVWALGNVAADSPGCRN-------LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPF 188 (458)
Q Consensus 116 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-------~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~ 188 (458)
+.++.+++-.+..|..++..+..++....- ...-..++..++..+...+++.+.++++.+...|+.+. ...
T Consensus 146 r~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar 223 (262)
T PF04078_consen 146 RIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAR 223 (262)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THH
T ss_pred HHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHH
Confidence 999999999999999999888766533211 11112356667777777889999999999999999874 223
Q ss_pred hhhhhhHHHHHH-----hhcCCChHHHHHHHHHHHHh
Q 043950 189 DQVRPALPALAQ-----LIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 189 ~~~~~~l~~l~~-----ll~~~~~~~~~~~~~~l~~l 220 (458)
......+|.... .+-..|+.++...-..+.|+
T Consensus 224 ~aL~~~LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 224 EALRQCLPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHS-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHhCcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 333444443111 11123566666655555554
No 163
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.014 Score=57.28 Aligned_cols=222 Identities=12% Similarity=0.073 Sum_probs=144.6
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC
Q 043950 72 VEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREE 151 (458)
Q Consensus 72 ~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 151 (458)
+..+.++. +.++..+++.|..+... .+....+...+++.+.+..+++.++-+--+|+..+..+|...| ..
T Consensus 733 i~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e~ 802 (982)
T KOG4653|consen 733 ISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------ED 802 (982)
T ss_pred HHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------hh
Confidence 34445555 67899999999999983 4556666677899999999999999999999999989886533 34
Q ss_pred CHHHHHHHhcccc---cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhH
Q 043950 152 ALIPLLAQLNEHA---KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI 228 (458)
Q Consensus 152 ~l~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~ 228 (458)
.++.+.....+.+ .++.+-.+-.++.++..............++...+...+++|...+..++..+++++.......
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 6777777553222 2344445557777777665444444556677777788888888889999999999995433222
Q ss_pred HHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhhHHHHHh---cCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950 229 QVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQTQCIIN---HGAVPCLLALLIHNHKKSIKKVACWTISN 304 (458)
Q Consensus 229 ~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~v~~~a~~~l~n 304 (458)
..+. ..++..++.+... ++..+|++|+..+..+..+.....-.+.. .+....+........+..++..|+.++-.
T Consensus 883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 2211 1234455555544 56778999999998888765544333221 12233333334444355566655555443
No 164
>PRK14707 hypothetical protein; Provisional
Probab=97.15 E-value=0.57 Score=51.39 Aligned_cols=399 Identities=17% Similarity=0.096 Sum_probs=217.3
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 25 LPAMVAGVW--SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 25 i~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+..+++... .++...+..+......+++. ......+-..|+...|-.+-+=++++..+..+...-..++. ....+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHHH
Confidence 444555554 45677777766665665443 33444444445444444454556656777666665566666 45555
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH-HhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 103 NVVIDHGAVPIFVKLLAS-PSDDVREQAVWALG-NVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
..+-..| +-..++.|.. ++......++..+. .++ +++..+..+ +.-.+.-.++-+.+-++..+...+...+..=.
T Consensus 242 ~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 242 NELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 5554445 5555555544 55555555555554 444 444444433 22234445555545566666565555444333
Q ss_pred cCCCCCChhhh-hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHH
Q 043950 181 KGKPQPPFDQV-RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWT 258 (458)
Q Consensus 181 ~~~~~~~~~~~-~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~ 258 (458)
.+.+.....+. .++-..|..+-+-+|..+...+...|..-...+++..+.+- ...+...+.-+.. ++......+...
T Consensus 319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 33333333333 33444455555667766666666665544434444444333 3344455544544 666666666666
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK 338 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 338 (458)
|..=...+++..+.+ +...+.-++.-|..=++..+...++..|.--..+..+..+.+--.++...|-.+-+.+|..+..
T Consensus 398 LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 654444455554443 4445555555555443777777777777776666666555444444454444455667878877
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHH-HHHHHHHhchhhcccCCCCCchhHHHHHHHhc
Q 043950 339 EAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLE-GLENILKVGEAEKNTGSTIGDVNQYARLVEED 417 (458)
Q Consensus 339 ~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (458)
.++..|..-... +.+.++.|-..++...|-.+-+.++......++. +...+.. .. .....|...
T Consensus 477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~-------------~l~~~~~~~ 541 (2710)
T PRK14707 477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-EL-------------QLRKAFDAH 541 (2710)
T ss_pred HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-ch-------------hhhhhhhhH
Confidence 777777665553 4455666655666777777777887654443333 3333321 11 124444455
Q ss_pred chHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 043950 418 EGFKKIEGLKSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 418 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 446 (458)
+....+..+..+++.+....+..-|...+
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERL 570 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence 55666667777777666665555554443
No 165
>PRK14707 hypothetical protein; Provisional
Probab=97.12 E-value=0.62 Score=51.16 Aligned_cols=381 Identities=15% Similarity=0.093 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLM-REDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFV 115 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 115 (458)
......+++.-..+... .....++... -+..|++-++ -+++.+.+..+......++.+ ...+..+-. .+|..++
T Consensus 137 ~~c~~a~a~i~~~~~~~--~~~~~~l~~~-~~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~~~-q~ia~~l 211 (2710)
T PRK14707 137 GRCERAVARLARHLRRE--DKARQTLNAQ-NISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAMDA-QGVATVL 211 (2710)
T ss_pred hHHHHHHHHHHHHhccc--cchhhhhccc-cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhcccch-HHHHHHH
Confidence 44555555555555433 2222222222 2444444443 344467777777777777773 455555533 3466666
Q ss_pred HhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH-HHhhcCCCCCChhhh-
Q 043950 116 KLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTL-SKLCKGKPQPPFDQV- 191 (458)
Q Consensus 116 ~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l-~~l~~~~~~~~~~~~- 191 (458)
+-+.. +++..+..+...-..++.+ ...+..+ +...+-..++.+.+=++......+...+ ..+..+ +.....+.
T Consensus 212 Na~sKWp~~~~c~~aa~~la~~l~~~-~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~ 288 (2710)
T PRK14707 212 NALCKWPDTPDCGNAVSALAERLADE-SRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDP 288 (2710)
T ss_pred HHHhcCCCChhHHHHHHHHHHHHcCc-HHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCH
Confidence 66655 4555555444444455444 3333332 3334555566664545554445444444 445443 22222232
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcCChhhH
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMGDDFQT 270 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~~~~~~ 270 (458)
..+-..+..+-+..+..+...+...+..-.-.+.+..+.+ +.-.+...+.-|+. ++..+...|...|..-...+++..
T Consensus 289 q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~ 367 (2710)
T PRK14707 289 INVTQALNALSKWADLPVCAEAAIALAERLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELR 367 (2710)
T ss_pred HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhh
Confidence 3444445556667787776666665554433444433322 23334444444444 665555555555544333355444
Q ss_pred HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
+.+ +...+..+++-+..=++..+...|+..|..-..+.++....+-..|+-..|-.+-+.++..+...++.+|.--+..
T Consensus 368 ~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~ 446 (2710)
T PRK14707 368 KDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH 446 (2710)
T ss_pred ccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc
Confidence 433 3445555555555543667777777777776666666666665566666555566678888888888888777654
Q ss_pred CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCC
Q 043950 351 GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHD 430 (458)
Q Consensus 351 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 430 (458)
+.+.++.+-..++...|-.+-+.+|..+...+.+.|..=+..+.. ++..|.-.+....|..|..-+
T Consensus 447 -d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~P 512 (2710)
T PRK14707 447 -DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWP 512 (2710)
T ss_pred -cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCC
Confidence 567677766666666666666789988877766666554443332 366666677778888888888
Q ss_pred ChHHHHHHHHH
Q 043950 431 NNGIREKAVKI 441 (458)
Q Consensus 431 ~~~v~~~a~~~ 441 (458)
+......|...
T Consensus 513 d~~~c~~A~~~ 523 (2710)
T PRK14707 513 DTPICAEAASA 523 (2710)
T ss_pred CcHHHHHHHHH
Confidence 76655444333
No 166
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.12 E-value=0.006 Score=60.18 Aligned_cols=191 Identities=17% Similarity=0.110 Sum_probs=129.0
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh--------HHhh----hCCHHHHHHHhcccccHHHHHHHHHHHHH
Q 043950 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN--------LVLR----EEALIPLLAQLNEHAKLSMLRIATWTLSK 178 (458)
Q Consensus 111 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--------~~~~----~~~l~~l~~~l~~~~~~~~~~~a~~~l~~ 178 (458)
...++.+|+. +++-..+..++.-+..+++.... .+.+ ...+|.++..+. ......+.....+|.+
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHHHH
Confidence 3455556644 34445566677766665543211 1111 245777777774 3444556677778888
Q ss_pred hhcCCCCC-ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC---ccchhh
Q 043950 179 LCKGKPQP-PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS---PSVLTP 254 (458)
Q Consensus 179 l~~~~~~~-~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~ 254 (458)
...+.|.. -......++|.+.+.+.-+|..++...+.++.-+....+......++ -+++.+..+-.+++ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence 77765432 22334778888889999999999999999998877555544443333 36788887777655 468999
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
|+.++..+.+.-|...-..+...++..+.+.|.++ ...||++|..+=.++.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhhh
Confidence 99999999986665555555667899999999988 8889999987655543
No 167
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.26 Score=45.78 Aligned_cols=258 Identities=13% Similarity=0.098 Sum_probs=141.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCc-hhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChh-hhhhhHH
Q 043950 119 ASPSDDVREQAVWALGNVAADSPG-CRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFD-QVRPALP 196 (458)
Q Consensus 119 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~ 196 (458)
.+++..++..|++.|+|.+...|. ++.. ..-.+..++..|-++.+.++.-.+..+|..+.....+.... ..-++.-
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial 345 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL 345 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence 457889999999999999988543 2222 23357777777767777889999988888877654322221 2244445
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChhhHH-HHHH--hCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950 197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQ-VVIE--AGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCI 273 (458)
Q Consensus 197 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 273 (458)
.+..+..+.+++.+..+...++.++.......+ .+.+ .+....++-.+.++++. ...||+.....+..+- ..+..
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~~~~~c~p~l-~rke~ 423 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRSELRTCYPNL-VRKEL 423 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHHHHHhcCchh-HHHHH
Confidence 577888899999999999988888743332222 1221 11223333334445543 3456666656554221 11111
Q ss_pred HhcCChHHHHHHhccCChhhHHH-HHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950 274 INHGAVPCLLALLIHNHKKSIKK-VACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 274 ~~~~~~~~l~~ll~~~~~~~v~~-~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
.+.++.. ++.. -...+. ..-| ...+....++....+.. ...-++++.-+.++..+...-.+...+-.
T Consensus 424 --~~~~q~~---ld~~-~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 424 --YHLFQES---LDTD-MARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred --HHHHhhh---hHHh-HHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHhH
Confidence 1122211 1111 111111 1112 11122223333222222 12223444445666666666666665544
Q ss_pred HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950 353 HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 353 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~ 392 (458)
+..+...-.......+..+...+-++++..+.+++..+..
T Consensus 492 ~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 492 RAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 4554444333445566667778888999999998887654
No 168
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.047 Score=53.79 Aligned_cols=226 Identities=10% Similarity=0.013 Sum_probs=143.8
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh
Q 043950 155 PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA 234 (458)
Q Consensus 155 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 234 (458)
.-+..+ .++.+.++..++..++.+.+...........+++......+++.|+-+--.++..+..+|.-.+ .
T Consensus 731 eai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e 801 (982)
T KOG4653|consen 731 EAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------E 801 (982)
T ss_pred HHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------h
Confidence 333344 5566778999999999999876555666668999999999999999999999998888775433 3
Q ss_pred CcHHHHHHH-hCC---CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH
Q 043950 235 GVCRRLVEL-LGH---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNR 310 (458)
Q Consensus 235 ~~i~~L~~l-l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~ 310 (458)
.+++.+... ... ...+.+...-.++.+++..-.+....... .++..++...+++ +...|..++..++++|.-..
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP-DHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHh
Confidence 456666663 222 22345555667777776544443333332 5667777777877 88889999999999985221
Q ss_pred HHHH-HHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHH--HHCCChHHHHhhccC-CCHHHHHHHHH
Q 043950 311 EQIQ-AVIDAGLIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYL--VREGCIKPLCDLLLC-VDPKIVTVCLE 385 (458)
Q Consensus 311 ~~~~-~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l--~~~~~l~~L~~ll~~-~~~~v~~~~~~ 385 (458)
-... .+.+ ++..++.+.. ++.+.+|..|+..+..+..+.+.+....+ .-.+....+..+... +++.++..+..
T Consensus 880 ~~vsd~~~e--v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 880 FQVSDFFHE--VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhHHHHH--HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 1111 1112 3444455444 45788999999999999876554444432 122344444444443 44445555555
Q ss_pred HHHHHHHh
Q 043950 386 GLENILKV 393 (458)
Q Consensus 386 ~l~~l~~~ 393 (458)
++..+-..
T Consensus 958 ~leei~a~ 965 (982)
T KOG4653|consen 958 CLEEIQAA 965 (982)
T ss_pred HHHHHHHH
Confidence 55554433
No 169
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.25 Score=48.18 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=92.5
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI 317 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 317 (458)
+.+-+++.+.++-+|......++---.+.. +.+++..|+..-.++.+.+||+.|.-+|+-++..++++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~----- 589 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ----- 589 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence 445556666777777776665532211111 23567777777555558999999999999999877764
Q ss_pred HcCChHHHHHHhcc-CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 318 DAGLIVPLVNVLQD-AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 318 ~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
.+..+.+|.. -++.||.-++.+|+-.|.+..... .+..|..+..++..-||+.|+-++..|+..
T Consensus 590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 5556666754 489999999999999988643222 255566777778888999999888877654
No 170
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.03 E-value=0.011 Score=57.68 Aligned_cols=234 Identities=14% Similarity=0.028 Sum_probs=149.9
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
...|++..|..+..-..+...++...+|..-....+... ..+++.+...+.....-.-..+++.++.|+++.+.
T Consensus 501 Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~ 574 (748)
T KOG4151|consen 501 IKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISE 574 (748)
T ss_pred ccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcch
Confidence 345677777777777777777777777772223321111 13556666665544322335678999999999888
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
..+..+...-.++.+-.++...++..++.++..+.||....--+...+.+...-.++........++.+...++.++..+
T Consensus 575 s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I 654 (748)
T KOG4151|consen 575 SDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAI 654 (748)
T ss_pred hhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccch
Confidence 88888888777888788888899999999999999998766555555555332223333332445555666666666645
Q ss_pred hcCCCCCC--hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHH
Q 043950 180 CKGKPQPP--FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALW 257 (458)
Q Consensus 180 ~~~~~~~~--~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~ 257 (458)
.....+.. ..........+..++.+.+.+++...+.++.|+.....+....+.....++.+..+-.-.....++.+..
T Consensus 655 ~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~ 734 (748)
T KOG4151|consen 655 TSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAP 734 (748)
T ss_pred hhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhh
Confidence 44432222 3444666778888999999999999999999876555555565666655555554433333333444444
Q ss_pred HH
Q 043950 258 TV 259 (458)
Q Consensus 258 ~l 259 (458)
+|
T Consensus 735 ~l 736 (748)
T KOG4151|consen 735 CL 736 (748)
T ss_pred HH
Confidence 43
No 171
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.01 E-value=0.36 Score=46.48 Aligned_cols=182 Identities=15% Similarity=0.100 Sum_probs=114.3
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
++...+..++...+. +.....-|+..+.++...- ++... ..+..++.|+.+++ ..||..|++.|-.+|.+++
T Consensus 20 ~~~~~y~~il~~~kg-~~k~K~Laaq~I~kffk~F-P~l~~-----~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~ 91 (556)
T PF05918_consen 20 QHEEDYKEILDGVKG-SPKEKRLAAQFIPKFFKHF-PDLQE-----EAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNP 91 (556)
T ss_dssp GGHHHHHHHHHGGGS--HHHHHHHHHHHHHHHCC--GGGHH-----HHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--
T ss_pred cCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHhhC-hhhHH-----HHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHH
Confidence 344567777777775 6778888999999987764 33333 36889999999999 8999999999999999888
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc--ccccHHHHHHHHHHHH
Q 043950 100 MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN--EHAKLSMLRIATWTLS 177 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~--~~~~~~~~~~a~~~l~ 177 (458)
+....+ ..+|+++|.+.++.-...+-.+|..+...++. +.+..++..+. .+.++.+++.++..|.
T Consensus 92 ~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 92 EHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 877766 58999999998887777787888777544432 34566676664 2567778998887775
Q ss_pred HhhcC-CCCC---ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950 178 KLCKG-KPQP---PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY 222 (458)
Q Consensus 178 ~l~~~-~~~~---~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 222 (458)
.-... .+.. ..+....++..+...|.+-..+--...+.+|..+-.
T Consensus 159 ~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 159 EKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp HHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred HHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 43322 2222 233445666667777765333334445555555543
No 172
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.021 Score=58.04 Aligned_cols=160 Identities=23% Similarity=0.226 Sum_probs=124.4
Q ss_pred CCHHHHHHhhcC----CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCC
Q 043950 66 GVVPRFVEFLMR----EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADS 140 (458)
Q Consensus 66 ~~i~~L~~ll~~----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~ 140 (458)
.+.|.+++.+.. ++ |++|..|.-+|+.+..-+.++... -+|.|+..+. ++++.+|.+++.+++.++..-
T Consensus 919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 367788888843 44 899999999999998866665443 3789999887 699999999999999998776
Q ss_pred CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950 141 PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 141 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 220 (458)
|...+. .-+.+...+ .+.++.+++.|.-++++|..+ .+..+.|.++.+...+.++++.+..-|=..+..+
T Consensus 993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 664333 345677777 788999999999999999876 3556789999999999999999998888888877
Q ss_pred ccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950 221 SYGTNDKIQVVIEAGVCRRLVELLGHP 247 (458)
Q Consensus 221 ~~~~~~~~~~~~~~~~i~~L~~ll~~~ 247 (458)
+...+... +++|-++.-|.++
T Consensus 1063 s~k~n~iy------nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTIY------NLLPDILSRLSNG 1083 (1251)
T ss_pred hhcccchh------hhchHHHHhhccC
Confidence 75443221 3566666666655
No 173
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.87 E-value=0.035 Score=46.30 Aligned_cols=142 Identities=13% Similarity=0.013 Sum_probs=100.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh
Q 043950 296 KVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-----AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD 370 (458)
Q Consensus 296 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ 370 (458)
..|...+..++++ ++....+.+..+=-.+..+|.. +.+..|..++.+++.+++.++.+...++...++++..++
T Consensus 97 cnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 3455555555555 4667777776655555555543 356789999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH-----HHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 371 LLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF-----KKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 371 ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
.++...+.-+..+..++.+|+-.+......| +..++...+ +.+..+.+.+++.+-+.+.++..+.
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiC----------qt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYIC----------QTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHH----------HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 9999998888899999999998877765442 222222221 2233556667777766666665555
Q ss_pred cCC
Q 043950 446 WCG 448 (458)
Q Consensus 446 ~~~ 448 (458)
.+.
T Consensus 246 sdn 248 (293)
T KOG3036|consen 246 SDN 248 (293)
T ss_pred cCC
Confidence 443
No 174
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.85 E-value=0.024 Score=50.92 Aligned_cols=111 Identities=15% Similarity=0.197 Sum_probs=85.5
Q ss_pred CcHHHHH-HHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHH
Q 043950 235 GVCRRLV-ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQ 312 (458)
Q Consensus 235 ~~i~~L~-~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~ 312 (458)
+++..++ ..+.+++..+|+.|+.++|-.+-.+.+... ..++.+...++.+ +..++..|+.++..+.. +....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 3454444 778888999999999999999887764443 3467788888777 88999999999999986 33333
Q ss_pred HHHHH-------HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950 313 IQAVI-------DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRG 351 (458)
Q Consensus 313 ~~~l~-------~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 351 (458)
..... ...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 33222 2457888888999999999999999999998765
No 175
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.056 Score=55.20 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=115.5
Q ss_pred hhhhhhhHHHHHHhhc----CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHh
Q 043950 188 FDQVRPALPALAQLIH----LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNI 262 (458)
Q Consensus 188 ~~~~~~~l~~l~~ll~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l 262 (458)
......+.|.+.+..+ .+||+++..|.-+++.++.-+..... .-++.|+..+. ++++.+|.++.-+++.+
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccch
Confidence 3444667777777774 56799999999999999865554322 24688898887 68999999999999999
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHH
Q 043950 263 VMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAAL 342 (458)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~ 342 (458)
+-..+...+ ..-+.|...|.+. ++.||+.|..+++++.... .+--.|.++.+...+.+++.+++.-|-.
T Consensus 989 av~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~ 1057 (1251)
T KOG0414|consen 989 AVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKS 1057 (1251)
T ss_pred hhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHH
Confidence 865554333 3456677888888 9999999999999998632 1223689999999999999999999988
Q ss_pred HHHHhhcCCC
Q 043950 343 AIANATVRGT 352 (458)
Q Consensus 343 ~L~~l~~~~~ 352 (458)
.+..+...++
T Consensus 1058 FF~Els~k~n 1067 (1251)
T KOG0414|consen 1058 FFKELSSKGN 1067 (1251)
T ss_pred HHHHhhhccc
Confidence 8888877653
No 176
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.83 E-value=0.08 Score=48.92 Aligned_cols=221 Identities=13% Similarity=0.143 Sum_probs=129.5
Q ss_pred HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcccc
Q 043950 86 EAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNEHA 164 (458)
Q Consensus 86 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~~~ 164 (458)
.|+++|-.+....+.....+.+.+++..+++.++..-....+. .-...-.... +........ + + .+ .-.
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-~---~---~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-G---Y---SI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-c---c---cc-CHH
Confidence 4677777887777777888889999999999985432222210 0000000000 111110000 0 0 00 000
Q ss_pred cHHHHHHHHHHHHHhhc-CC--CCCChhhh--hhhHHHHHHhhcCCC---hHHHHHHHHHHHHhccCChhhHHHHHHhCc
Q 043950 165 KLSMLRIATWTLSKLCK-GK--PQPPFDQV--RPALPALAQLIHLDD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGV 236 (458)
Q Consensus 165 ~~~~~~~a~~~l~~l~~-~~--~~~~~~~~--~~~l~~l~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 236 (458)
...+.+..+.++..+.. .. ........ ..++..|...+.+.. +.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 11233444444444444 22 11111122 344555666666553 788899999999999888888888999999
Q ss_pred HHHHHHHhC-C---CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhh--HHH-HHH----HHHHHh
Q 043950 237 CRRLVELLG-H---PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKS--IKK-VAC----WTISNI 305 (458)
Q Consensus 237 i~~L~~ll~-~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--v~~-~a~----~~l~nl 305 (458)
.+.+++.+. . ++.++....-.+++.+|- +....+.+.+.+.++.+.+++.++ +.- .+. ..+ ..+-.+
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~-~~~~~l~~~d~a~~lG~~~DEL 230 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP-DYVKALRRRDTASNLGNSFDEL 230 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH-HHHHHhcccchHHHHHHHHHHH
Confidence 999999988 4 344555555667777776 566668888899999999999877 431 111 233 344445
Q ss_pred hcCCHHHHHHHHH
Q 043950 306 TAGNREQIQAVID 318 (458)
Q Consensus 306 ~~~~~~~~~~l~~ 318 (458)
.+|.|.....+++
T Consensus 231 ~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 231 MRHHPSLKPDIID 243 (379)
T ss_pred HccCHHHHHHHHH
Confidence 5677665555444
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.79 E-value=0.0025 Score=47.11 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=61.0
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 277 GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
.++..|+++|..+.++.+...||.=|+.++...|..+..+-+.|+-..+++++.++|++|+.+|+.++..++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3688899999555488899999999999999777777777788999999999999999999999999988764
No 178
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.45 Score=44.26 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=94.2
Q ss_pred HHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHH-HhCCCCccch
Q 043950 174 WTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVE-LLGHPSPSVL 252 (458)
Q Consensus 174 ~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~-ll~~~~~~~~ 252 (458)
..+..+..............++..+..-..+++..++..++++|+|++...++........ .+..++. +....+.+|.
T Consensus 239 Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~ 317 (533)
T KOG2032|consen 239 AFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQ 317 (533)
T ss_pred HHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHH
Confidence 3344444433222233345556666666667788999999999999998855554434333 3444444 4444567788
Q ss_pred hhHHHHHhHhhcCCh--hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--C--CHHHHHHHHHcCChHHHH
Q 043950 253 TPALWTVGNIVMGDD--FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--G--NREQIQAVIDAGLIVPLV 326 (458)
Q Consensus 253 ~~a~~~l~~l~~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~--~~~~~~~l~~~~~~~~L~ 326 (458)
..++.+|..+...-. .....+ .++.-.+..+..+. ++++|..|...++.++. + -++..-.-+..+..+ +.
T Consensus 318 leam~~Lt~v~~~~~~~~l~~~~--l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~-ll 393 (533)
T KOG2032|consen 318 LEAMKCLTMVLEKASNDDLESYL--LNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAP-LL 393 (533)
T ss_pred HHHHHHHHHHHHhhhhcchhhhc--hhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcccc-ce
Confidence 888888877654221 111111 24555677888888 89999999998888875 2 222222222333433 44
Q ss_pred HHhccCChhhHH
Q 043950 327 NVLQDAEFDIKK 338 (458)
Q Consensus 327 ~ll~~~~~~~~~ 338 (458)
..+++.++.+-.
T Consensus 394 lhl~d~~p~va~ 405 (533)
T KOG2032|consen 394 LHLQDPNPYVAR 405 (533)
T ss_pred eeeCCCChHHHH
Confidence 445666665543
No 179
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.22 Score=48.34 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950 168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247 (458)
Q Consensus 168 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 247 (458)
+.+.+..++..+-..+ .....+.+.+..+.+...+++..++..++..+..++......-+ .+-.++...+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d--~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLD--KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccC--chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhcc
Confidence 4444444444444332 23336678888888888899999999999999999864433323 44456778888888889
Q ss_pred CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304 (458)
Q Consensus 248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n 304 (458)
.+.||..|+.+|+.+=....+. +..+...+..+++.+++++||+.|...+.+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 9999999999999996322111 135677888999988899999987655544
No 180
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.77 E-value=0.073 Score=45.35 Aligned_cols=146 Identities=14% Similarity=0.028 Sum_probs=99.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-----ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh
Q 043950 297 VACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-----EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL 371 (458)
Q Consensus 297 ~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l 371 (458)
.|...+..++++ ++.+..+++..+.-.|...++.. -+.+|...+.+++.+++..+++...++.+.+.++.-.+.
T Consensus 69 naLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 344444455554 57788888888776677776543 366899999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchH-HHHHhhhcCCChHHHHHHHHHHHHhcCCC
Q 043950 372 LLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGF-KKIEGLKSHDNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 372 l~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 449 (458)
++..++-.+..|..++.+++..+......|+. .-.++.=...+ ..+..+..++++++-+...+...+..+..
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t------~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQT------AERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSS------HHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcC------HHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 99988888888999999999988877655442 11111112222 33445677888887766666655555443
No 181
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.49 Score=46.35 Aligned_cols=301 Identities=17% Similarity=0.085 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHcC--CChhhHHHHHhCCC
Q 043950 40 QLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-------DYPQLQYEAAWALTNIAS--GTSMNTNVVIDHGA 110 (458)
Q Consensus 40 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-------~~~~i~~~a~~~L~~l~~--~~~~~~~~~~~~~~ 110 (458)
-.+|+..+....+..+.. .=.|+++.++..+... +.+.-.+-|++.+.++.. ..+....-+.+.-+
T Consensus 387 dlaal~fl~~~~sKrke~-----TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fi 461 (970)
T COG5656 387 DLAALFFLIISKSKRKEE-----TFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFI 461 (970)
T ss_pred hHHHHHHHHHHhcccchh-----hhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 345666666655543211 1247899999988321 123445667788877765 23333344455556
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh
Q 043950 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ 190 (458)
Q Consensus 111 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 190 (458)
++.++..++++..-++..++..++.+..+-+. ...-..+.+...+.+ .+++-.++..|+-++.-+..+. ......
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~ 536 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKF 536 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHH
Confidence 77777888888888999999999999544332 223334566667777 4466678888888888877764 222222
Q ss_pred h---hhhHHHHHHhhcCCChHHHHHHHHHHH-HhccCChhhHHHHHHh---CcHHHHHHHhCCCC------ccchhhHHH
Q 043950 191 V---RPALPALAQLIHLDDEEVLSDACWTLS-YLSYGTNDKIQVVIEA---GVCRRLVELLGHPS------PSVLTPALW 257 (458)
Q Consensus 191 ~---~~~l~~l~~ll~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~------~~~~~~a~~ 257 (458)
. .+.++.+..+-+.-+.++...++..+. ..+..-......+... .++.....++.+++ ++-...|.+
T Consensus 537 sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasG 616 (970)
T COG5656 537 SAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASG 616 (970)
T ss_pred HhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHH
Confidence 2 344444444444445556555555432 2221111111111111 12333333443331 122334444
Q ss_pred HHhHhhc-----C-ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc
Q 043950 258 TVGNIVM-----G-DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD 331 (458)
Q Consensus 258 ~l~~l~~-----~-~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~ 331 (458)
.|..+.. . .+...+.+ .....|.+--.+.+. ..++-.+|+..+-+..-...+ +. -+.-|+.+.+.+++.+
T Consensus 617 iL~T~~smiLSlen~p~vLk~l-e~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~-pimwgi~Ell~~~l~~ 692 (970)
T COG5656 617 ILRTIESMILSLENRPLVLKYL-EVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IE-PIMWGIFELLLNLLID 692 (970)
T ss_pred HHHHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hh-hhhhHHHHHHHhcccc
Confidence 4443321 1 12222222 334566666666666 677778888887776532211 11 1122456666666666
Q ss_pred CC-hhhHHHHHHHHHHhhcCCCHH
Q 043950 332 AE-FDIKKEAALAIANATVRGTHE 354 (458)
Q Consensus 332 ~~-~~~~~~a~~~L~~l~~~~~~~ 354 (458)
.. .....++.-++.|+...|..+
T Consensus 693 ~~t~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 693 EITAVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred cchhhhHHHHHHHHHHHHHhCccc
Confidence 55 366788899999998876433
No 182
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.70 E-value=0.35 Score=44.80 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=76.2
Q ss_pred HHHh-CCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-c--cccHHHHHHHHHHH
Q 043950 104 VVID-HGAVPIFVKLLAS---PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-E--HAKLSMLRIATWTL 176 (458)
Q Consensus 104 ~~~~-~~~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~--~~~~~~~~~a~~~l 176 (458)
-+++ ...+..|...+++ -.+.+-..|+.++..+..+.|..-..+.+.|.++.++..+. . .++.++....-.++
T Consensus 100 nl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l 179 (379)
T PF06025_consen 100 NLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVL 179 (379)
T ss_pred cccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 3445 4556666667765 34788889999999999999999899999999999999996 2 25677888888888
Q ss_pred HHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043950 177 SKLCKGKPQPPFDQVRPALPALAQLIHLD 205 (458)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 205 (458)
..+|-+..........+.++.+.+.+.++
T Consensus 180 ~AicLN~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 180 SAICLNNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred hHHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence 88888765444444467777777766543
No 183
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.67 E-value=0.16 Score=46.74 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=101.8
Q ss_pred CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHH-HHHhccCChhhHHH
Q 043950 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWT-LSYLSYGTNDKIQV 230 (458)
Q Consensus 152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~-l~~l~~~~~~~~~~ 230 (458)
.+..+++.+.++.+...+..|+..|..++.+.+.+-+....-.+..+++.-.+.++++...|..+ +..++.+.+..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 56677788866688889999999999999998766666667777777777777777666655554 33344444421
Q ss_pred HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
-+..+..++.+.++..-..++..+..++..-+...-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus 407 -----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 407 -----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 233444555556666666667677777654332222222357899999999999 99999999999998874
No 184
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.65 E-value=0.038 Score=54.82 Aligned_cols=155 Identities=16% Similarity=0.113 Sum_probs=113.6
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 271 (458)
..++|.+...+.+.+...+..-+.+|.++..+-+...-.---..++|.|++.|.-++..+|..++.++..+....+....
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 67889999988888888888888888888866554221111125788899999999999999999999888766655433
Q ss_pred HHHhcCChHHHHHHhccCCh---hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950 272 CIINHGAVPCLLALLIHNHK---KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT 348 (458)
Q Consensus 272 ~~~~~~~~~~l~~ll~~~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 348 (458)
.-. ..++|.++.+-.+. + ..||..|..++..+...-|...-......++..++..|.++...+|++|..+=.+..
T Consensus 946 ~~~-~Tlvp~lLsls~~~-~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 946 EHL-STLVPYLLSLSSDN-DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred HHH-hHHHHHHHhcCCCC-CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 333 34778887777766 4 578999999999998733333333344457888888999888889999987755543
No 185
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.099 Score=49.21 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=104.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH-hCCCCccchhhHHHHHhHhhcCChhhHHHHHh
Q 043950 197 ALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL-LGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN 275 (458)
Q Consensus 197 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 275 (458)
.+.+++.+.|+-.+.....+++---.... ..|++..++.. +++.+.++|+.|.-+|+-+|..++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------- 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------- 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence 45677777787777766655532111111 23566677766 667889999999999999987554
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH
Q 043950 276 HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ 355 (458)
Q Consensus 276 ~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 355 (458)
+.+...+++|..++++.||...+.+|+-.|.++..+. .+..|-.++.+.+.-||+.|+.+++-+...++++.
T Consensus 585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4577778888877799999999999999887543321 34556666677777889999999988877665443
Q ss_pred HHHHHHCCChHHHHhhccCCC
Q 043950 356 IKYLVREGCIKPLCDLLLCVD 376 (458)
Q Consensus 356 ~~~l~~~~~l~~L~~ll~~~~ 376 (458)
...+ .+..+.+.+.+..++
T Consensus 657 np~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhH--HHHHHHHHHHHhhhh
Confidence 2221 123445555544433
No 186
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.63 E-value=0.17 Score=45.51 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=109.1
Q ss_pred CCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC-c-
Q 043950 66 GVVPRFV-EFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP-G- 142 (458)
Q Consensus 66 ~~i~~L~-~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~- 142 (458)
+++..|+ ..+++.+ +.+|+.|+.+|+-.+--+.+... ..++.+.+.++.++..++..|+.++..+..... .
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3454444 6677888 89999999999999885553333 236778888877899999999999998874321 1
Q ss_pred hhhHH------hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhc---CCChHHHHH
Q 043950 143 CRNLV------LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ-LIH---LDDEEVLSD 212 (458)
Q Consensus 143 ~~~~~------~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~---~~~~~~~~~ 212 (458)
....- .....+..+.+.+ .+.+++++..++..++.|........ ...++..|+- ++. .++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11111 1123445555556 56688899999999999887653333 2334444332 222 234566666
Q ss_pred HHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC
Q 043950 213 ACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS 248 (458)
Q Consensus 213 ~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 248 (458)
.-..+-..+..+.... ..+...+++.+..+...+.
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCcc
Confidence 6666666665555443 3555667777777766543
No 187
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.57 E-value=0.018 Score=45.95 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=97.4
Q ss_pred CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH-HcCChHH
Q 043950 246 HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI-DAGLIVP 324 (458)
Q Consensus 246 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~~~~~~ 324 (458)
...+++|..+.-++..+.. ....-....+-+.+-..+..+ +.+-...+..++..+.-+.++....++ ..|+++.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~ 90 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLES 90 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHH
Confidence 3567789999999988842 222222233455555666665 677788899999999888888877776 6789999
Q ss_pred HHHHhc--cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHH-HHHHHHHHHHH
Q 043950 325 LVNVLQ--DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPK-IVTVCLEGLEN 389 (458)
Q Consensus 325 L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~~~~~l~~ 389 (458)
+..+.. .++..++..++.++..-+. +...+.. +.+.+++.|....+ ++++. ++..++-+|.+
T Consensus 91 l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 91 LLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 999998 7789999999999988876 4454444 45567999999995 45555 67777666654
No 188
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.32 E-value=0.43 Score=44.04 Aligned_cols=172 Identities=11% Similarity=0.081 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCChh-hhhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh
Q 043950 167 SMLRIATWTLSKLCKGKPQPPFD-QVRPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL 244 (458)
Q Consensus 167 ~~~~~a~~~l~~l~~~~~~~~~~-~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll 244 (458)
+-+..|..-|..+.......-.. ....++..+.+.+.+ .+..++..+++.|..++.+.+.....-.+ -.+..++..-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa 380 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAA 380 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHH
Confidence 33444544344333332222222 225566667777776 77888999999999999776644321111 1344555555
Q ss_pred CCCCccchhhHHHHHh-HhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCCh
Q 043950 245 GHPSPSVLTPALWTVG-NIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLI 322 (458)
Q Consensus 245 ~~~~~~~~~~a~~~l~-~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~ 322 (458)
.+..+.+...|..... -++...+... +..+..++.+. |...-..+...+..++.. ..+....++. .+.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-dia 450 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DIA 450 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hhh
Confidence 5665555555555443 3444444332 33344444445 666666666677777753 3344333333 599
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 323 VPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 323 ~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
|.+++...+.+..||+.|++||..+..
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 999999999999999999999999875
No 189
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.31 E-value=0.03 Score=46.47 Aligned_cols=112 Identities=15% Similarity=0.212 Sum_probs=79.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC--------CCCHHHHHHHHHHHHHH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR--------EDYPQLQYEAAWALTNI 94 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--------~~~~~i~~~a~~~L~~l 94 (458)
.....+++.+++..... ..+..|...+...+....+.+++.|++..|+++|.. ..+.++...+++|+..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34566778787655432 444444444444334457788888999999998842 12357889999999999
Q ss_pred cCCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043950 95 ASGTSMNTNVVID-HGAVPIFVKLLASPSDDVREQAVWALGNVA 137 (458)
Q Consensus 95 ~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~ 137 (458)
.. +......++. .+++..|+..+.+++..++..++.+|+.+|
T Consensus 144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98 4666666665 688999999999999999999999999886
No 190
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.26 E-value=0.15 Score=43.72 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHH
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLV 414 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 414 (458)
....|+..|--++.-. +.....+.+...++.++++++ ...+.+...++.+|..++-..+.. ...|
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence 4556677776666653 355566678899999999995 456789999999999988776654 6689
Q ss_pred HhcchHHHHHhhhcC--CChHHHHHHHHHHHHhcCCCCCCCC
Q 043950 415 EEDEGFKKIEGLKSH--DNNGIREKAVKILETYWCGRVVGPQ 454 (458)
Q Consensus 415 ~~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~~~~~~~~ 454 (458)
++.+|+..+..+.++ .+.+++-++...+--|+..|.+..+
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~ 214 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIP 214 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCC
Confidence 999999999999655 4678888999999888887766443
No 191
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.24 E-value=2.1 Score=45.69 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=98.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
+..++..+..+...+|-.|+++|..+...++.--.+..++.++. .-+.++. ..+|+.|+..++......++....
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R~~Dss-asVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GRLNDSS-ASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence 55667777788899999999999999887532223333333333 3334555 699999999999877755555444
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 105 VIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
.. ..+..-+.++...||..++.++..+|...|.+.... .+...++... ++....++.-++.++.++-..+
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~---~~cakmlrRv-~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV---DMCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH---HHHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence 33 445555556778999999999999998888763321 1233333333 3333448899999999988776
No 192
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=0.47 Score=46.20 Aligned_cols=105 Identities=21% Similarity=0.136 Sum_probs=79.3
Q ss_pred CCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHH
Q 043950 151 EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQV 230 (458)
Q Consensus 151 ~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 230 (458)
|.+..+++.. .+++..++..++..+..+.............++...+..-+.+..+.++..|..+|+.+-..+.+.
T Consensus 85 ~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 3444444444 667888999999999999986666666677888888988999999999999999999997332211
Q ss_pred HHHhCcHHHHHHHhCC-CCccchhhHHHHHhH
Q 043950 231 VIEAGVCRRLVELLGH-PSPSVLTPALWTVGN 261 (458)
Q Consensus 231 ~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~ 261 (458)
+..+...+..++++ ++++||+.|+..+.+
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 23466777788876 688899998866644
No 193
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.19 E-value=0.0077 Score=32.85 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.4
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 278 AVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
++|.++++++++ +++||..|+++++.++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 368899999999 99999999999999975
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.18 E-value=0.82 Score=46.12 Aligned_cols=176 Identities=16% Similarity=0.196 Sum_probs=112.0
Q ss_pred HHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH-HHHHHHcCChHHHHHHhccCCh-h
Q 043950 258 TVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ-IQAVIDAGLIVPLVNVLQDAEF-D 335 (458)
Q Consensus 258 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~l~~~~~~~~L~~ll~~~~~-~ 335 (458)
++++....+++.+..+++.++...+...++.-....+...+...++|++...+.. .....+.--...+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999987656788999999999998632111 1111111011223333433333 6
Q ss_pred hHHHHHHHHHHhhcCCCH--------HHHHHHHH--------------CCChHH-HHhhcc-CCCHHHHHHHHHHHHHHH
Q 043950 336 IKKEAALAIANATVRGTH--------EQIKYLVR--------------EGCIKP-LCDLLL-CVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~--------~~~~~l~~--------------~~~l~~-L~~ll~-~~~~~v~~~~~~~l~~l~ 391 (458)
.-..|+..|..++..++. .....+.+ ...+.. +..++. ++.+..+..|++++.++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~ 653 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVL 653 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHH
Confidence 677777888887765321 00011111 112223 444444 345667788999999988
Q ss_pred HhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHHHHhc
Q 043950 392 KVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNGIREKAVKILETYW 446 (458)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~~ 446 (458)
...++ +.....+.|++..+.++. .+...+++..+..++..+.
T Consensus 654 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 654 EQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 76554 367777888899888873 2335667777777766543
No 195
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.16 E-value=0.12 Score=54.40 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC
Q 043950 169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS 248 (458)
Q Consensus 169 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 248 (458)
...+.|+...+....+ -.....+.+..++..+..+...+|..|++|+..+...++.. +....+-..+..-+.+..
T Consensus 794 ~~~a~li~~~la~~r~--f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dss 868 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARS--FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSS 868 (1692)
T ss_pred chhHHHHHHHHHhhhH--HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccch
Confidence 3445566666555422 11223677788888888888999999999999999776643 223334445556667778
Q ss_pred ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHH
Q 043950 249 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNV 328 (458)
Q Consensus 249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~l 328 (458)
..||++|+..+|......++.... ..+.+.+-+.++ .-.||+.+...+..+|...|.. .. +...+.++
T Consensus 869 asVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~-----i~~~cakm 936 (1692)
T KOG1020|consen 869 ASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SK-----IVDMCAKM 936 (1692)
T ss_pred hHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hh-----HHHHHHHH
Confidence 889999999999998877766554 356677777777 7889999999999999765432 22 23334444
Q ss_pred h---ccCChhhHHHHHHHHHHhhcC
Q 043950 329 L---QDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 329 l---~~~~~~~~~~a~~~L~~l~~~ 350 (458)
+ .++...+++-+...+.++...
T Consensus 937 lrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 937 LRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HHHhccchhHHHHHHHHHHHHHhcc
Confidence 4 333444788888888887653
No 196
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.04 E-value=0.16 Score=43.66 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh
Q 043950 39 LQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLL 118 (458)
Q Consensus 39 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 118 (458)
....|++.|.-++--. ++....+.....++.|+++|.....+.++..++.+|..+..+++.+...+-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 4455777777776654 666777778889999999996655589999999999999988999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHHhhcCC
Q 043950 119 AS--PSDDVREQAVWALGNVAADS 140 (458)
Q Consensus 119 ~~--~~~~~~~~a~~~L~~l~~~~ 140 (458)
++ .+.+++-.++..|.-+....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 87 55788888888887665443
No 197
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.99 E-value=0.91 Score=39.09 Aligned_cols=204 Identities=18% Similarity=0.103 Sum_probs=117.0
Q ss_pred HHHHH-hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950 196 PALAQ-LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 274 (458)
Q Consensus 196 ~~l~~-ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 274 (458)
+.++. +-+..+++.+...+.+|..++.+...... -++..+..+...+....+..+.+.+..+-..++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 34443 55677899999999999999976621112 245677777777766665566777777765554332
Q ss_pred hcCChHHHHHH---------hccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-ccCChhhHHHHHHHH
Q 043950 275 NHGAVPCLLAL---------LIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-QDAEFDIKKEAALAI 344 (458)
Q Consensus 275 ~~~~~~~l~~l---------l~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~a~~~L 344 (458)
+.+..++.. .......+.....+.++..+|...++... .+++.+...+ ...++.++..++.++
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 223333333 11111334555666788888876665322 2677788888 677888999999999
Q ss_pred HHhhcCCCHHHHHHHHHCCChHHHHhhccCC-CHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHH
Q 043950 345 ANATVRGTHEQIKYLVREGCIKPLCDLLLCV-DPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKI 423 (458)
Q Consensus 345 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 423 (458)
..++...-.+.... ...+..-+..+ .+.+... +--+..++..+.-.. +.|.. + ....+..+
T Consensus 147 ~~Lc~~~vvd~~s~------w~vl~~~l~~~~rp~v~~~-l~~l~~l~~~~~~~~---------e~~~~-~-~~~~l~~l 208 (234)
T PF12530_consen 147 APLCEAEVVDFYSA------WKVLQKKLSLDYRPLVLKS-LCSLFALVPQGAVDS---------EEYEE-L-KRQILQLL 208 (234)
T ss_pred HHHHHHhhccHHHH------HHHHHHhcCCccchHHHHH-HHHHHHHhccccCCh---------hhhhH-H-HHHHHHHH
Confidence 99985432232222 34444444433 3444333 222222333222221 11222 2 44558888
Q ss_pred HhhhcCCChH
Q 043950 424 EGLKSHDNNG 433 (458)
Q Consensus 424 ~~l~~~~~~~ 433 (458)
+++..+.+.+
T Consensus 209 W~~~~~~~~~ 218 (234)
T PF12530_consen 209 WEYTSSSDVN 218 (234)
T ss_pred Hhhccccccc
Confidence 8887776644
No 198
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.96 E-value=0.0096 Score=32.47 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=26.0
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
++|.+++++++++++||..|+.+|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999999753
No 199
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.96 E-value=0.2 Score=39.97 Aligned_cols=136 Identities=18% Similarity=0.140 Sum_probs=93.5
Q ss_pred CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH-hcCChHHH
Q 043950 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII-NHGAVPCL 282 (458)
Q Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~l 282 (458)
...++++..+.-++..+.+ ..+.-....+-+.+-.++...+.+-...++.++..+--..++....++ ..|+.+.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 3567788888888877741 111122223445555666666666777888888888888888777777 77899999
Q ss_pred HHHhc--cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChh-hHHHHHHHHHH
Q 043950 283 LALLI--HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFD-IKKEAALAIAN 346 (458)
Q Consensus 283 ~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~-~~~~a~~~L~~ 346 (458)
..+.. .+ +..+...++.++..-|. +...+..+. ...++.|-+.++ +++.. +|..|+-+|+.
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc~-d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAACI-DKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHTT-SHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHc-cHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 99998 55 77888888888887764 334444444 458899999995 44555 78888887765
No 200
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.89 E-value=2.2 Score=43.49 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=147.3
Q ss_pred hhhHHHHHHhhcC-----CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC----CCC----ccchhhHHHH
Q 043950 192 RPALPALAQLIHL-----DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG----HPS----PSVLTPALWT 258 (458)
Q Consensus 192 ~~~l~~l~~ll~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a~~~ 258 (458)
.+++..++.++.+ .+......++..|..++... .+.+.+++.|.++.|+..+. .+. ..+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3556666666653 34566677777887777554 45566888999998887774 333 4566666666
Q ss_pred HhHhhcCChhh-HH---HHHh--------cCChHHHHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChH
Q 043950 259 VGNIVMGDDFQ-TQ---CIIN--------HGAVPCLLALLIHNH---KKSIKKVACWTISNITAGNREQIQAVIDAGLIV 323 (458)
Q Consensus 259 l~~l~~~~~~~-~~---~~~~--------~~~~~~l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~ 323 (458)
+..+....... .. .... ..-+..+++.+.++. ++.+....+.+|.+++.++++.++.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 66665322211 10 0001 112566666665541 57888999999999999999988888772 33
Q ss_pred HHHHHhcc--CChhhHHHHHHHHHHhhcCC-----CHHHHHHHHHCCChHHHHhhccCC--------CHH--------HH
Q 043950 324 PLVNVLQD--AEFDIKKEAALAIANATVRG-----THEQIKYLVREGCIKPLCDLLLCV--------DPK--------IV 380 (458)
Q Consensus 324 ~L~~ll~~--~~~~~~~~a~~~L~~l~~~~-----~~~~~~~l~~~~~l~~L~~ll~~~--------~~~--------v~ 380 (458)
+.+++=.- ....--...+.+++.++.+- .......+++.|+++..++++... .++ -.
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 33332111 11111123466777776542 235677788999999888877531 111 22
Q ss_pred HHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh-hcCCChHHHHHHHHHHHHhcCCC
Q 043950 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL-KSHDNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 381 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~ 449 (458)
..++..|.-++...+.. +.....+++..+-.| +.+....|-..|..+|+.+-+.+
T Consensus 353 p~iL~lL~GLa~gh~~t--------------Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPT--------------QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHHHHHHHhcCHHH--------------HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 45666666666644432 222355677777777 45557788889999998877654
No 201
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.86 E-value=0.14 Score=40.95 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=87.3
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
..++.|+++++.+....+|.+++++||.+..-+|...+.+... .+.-. -............. .... .+. .+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~-~~~~---~~~-~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLP-MMGI---SPS-SE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHh-hccC---CCc-hH
Confidence 3577888899888768999999999999988655544422211 11000 01111111111111 1111 111 12
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
...-..++..|+..+.+..-..-...+..++.++..............++|.++..+++.+...++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2233346778888885444444455667777777755445556777999999999999777788887777666654
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.85 E-value=0.64 Score=43.80 Aligned_cols=260 Identities=12% Similarity=0.095 Sum_probs=141.3
Q ss_pred HHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-C
Q 043950 43 ATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-P 121 (458)
Q Consensus 43 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~ 121 (458)
.-..|..+.........+..++..++..|+.++.+++ +.-|.....+|.++.+.....|..+.. .+...+.+++.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 3445555544322222333455567888999999998 899999998998887655555655543 345666666654 3
Q ss_pred CHHHHHHHHHHHHHhhcCCC-chhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH
Q 043950 122 SDDVREQAVWALGNVAADSP-GCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ 200 (458)
Q Consensus 122 ~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ 200 (458)
........+.+++.+..+-. ..++.... -....++.+.....-.........++..++..++. ....++..++.
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk 262 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLK 262 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHH
Confidence 44455667778888775422 11111100 01122222332222233445556666666554322 22333344444
Q ss_pred hhcCCChHHHHHHHHHHHHhccCCh-hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhc---
Q 043950 201 LIHLDDEEVLSDACWTLSYLSYGTN-DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINH--- 276 (458)
Q Consensus 201 ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--- 276 (458)
.=-..++.-...-+.-+..+...-+ .... -+...++..+.+++.+++..|.+.|+..+.| +....++..
T Consensus 263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~-~i~~~lf~~la~ci~S~h~qVAErAl~~w~n------~~~~~li~~~~~ 335 (409)
T PF01603_consen 263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQ-KIMVPLFKRLAKCISSPHFQVAERALYFWNN------EYFLSLISQNSR 335 (409)
T ss_dssp HS-SS-HHHHHHHHHHHHHHHTT--HHHHH-HHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS------HHHHHHHHCTHH
T ss_pred hCCCCCchhHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC------HHHHHHHHhChH
Confidence 3334555555555555666654332 2223 2333578888999999998888888876532 222222222
Q ss_pred CChHHHHHHhccCC----hhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950 277 GAVPCLLALLIHNH----KKSIKKVACWTISNITAGNREQIQAV 316 (458)
Q Consensus 277 ~~~~~l~~ll~~~~----~~~v~~~a~~~l~nl~~~~~~~~~~l 316 (458)
.++|.+...+.... +..|+..|..++.-+...+++....+
T Consensus 336 ~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 336 VILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp HHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 36777777765421 45789999999888887766654443
No 203
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.74 E-value=1.2 Score=39.00 Aligned_cols=203 Identities=11% Similarity=0.066 Sum_probs=138.7
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh---h---hhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ---V---RPALPALAQLIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~---~---~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 219 (458)
.+.+.|.+..++..+ ...+-+.+..+..+..++-+..-...... . ...+..++.--.. .+++...+-..+..
T Consensus 74 ef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHH
Confidence 356778888999998 66677788888888888877653222211 1 2233333333111 24444444444444
Q ss_pred hccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCC----hHHHHHHhccCChhhHH
Q 043950 220 LSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGA----VPCLLALLIHNHKKSIK 295 (458)
Q Consensus 220 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~l~~ll~~~~~~~v~ 295 (458)
... .+...+.+..+.-+......++.+.-++...|..+...+...+...+..++..+. .+..-.++.++ +.-.+
T Consensus 152 cir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvtk 229 (342)
T KOG1566|consen 152 CIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVTK 229 (342)
T ss_pred HHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceehH
Confidence 443 3335566777778888888898888889999999998888777666666664432 34466777887 89999
Q ss_pred HHHHHHHHHhhc--CCHHHHHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950 296 KVACWTISNITA--GNREQIQA-VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 296 ~~a~~~l~nl~~--~~~~~~~~-l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
+.+...++.+.. ++...+.. +-+..-+..++.+|.+....+|-+|-....-.+.+.+
T Consensus 230 rqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 999999999875 34343333 3334578889999999999999999999888877543
No 204
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.68 E-value=1.2 Score=43.59 Aligned_cols=194 Identities=11% Similarity=0.075 Sum_probs=135.6
Q ss_pred hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh
Q 043950 190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ 269 (458)
Q Consensus 190 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~ 269 (458)
....++|.+.+++...|..+|...+.-+-.....- .+..++..+++.+..-+.+.++.+|+.++.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L---t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL---TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc---CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 55789999999999999999988887776665432 233667789999999999999999999999998887532221
Q ss_pred HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
.++...++.+..+-.+. +..+|-...-+++-++.+..... .+.-....+.+.+.++-...|..+.+++.....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 23333455555544433 67788888888887765421111 122233445556777777788888888877765
Q ss_pred CCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhh
Q 043950 350 RGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 350 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~ 397 (458)
.-+... ....+++.+..+.-+++..++..+..++..+....++.
T Consensus 477 ~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 477 YFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred ccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 432211 23457888888888899999999999999888776654
No 205
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.64 E-value=0.72 Score=44.96 Aligned_cols=188 Identities=12% Similarity=0.152 Sum_probs=132.0
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC
Q 043950 106 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ 185 (458)
Q Consensus 106 ~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~ 185 (458)
+..+++|.|++++...+..+|-.-+.-+-.+... ....+.+..+++.+...+ .+.++.+++..+.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence 5567899999999999999987666555555433 233455666788888777 788999999999998888765322
Q ss_pred CChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc-HHHHHHHhCCCCccchhhHHHHHhHhhc
Q 043950 186 PPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV-CRRLVELLGHPSPSVLTPALWTVGNIVM 264 (458)
Q Consensus 186 ~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-i~~L~~ll~~~~~~~~~~a~~~l~~l~~ 264 (458)
. ......+..+..+-.+++..++....-|++.++....... ..++ ...+.+-++++-..-|..+.+.+.....
T Consensus 403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1 2335556666666667778999999999998886533221 2333 3445556777777788888888876655
Q ss_pred CChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 265 GDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
..+. .-+...+++.+..+..++ +..+|..|..++..+-.
T Consensus 477 ~~~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence 4432 223457889999888888 88899988888877654
No 206
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.64 E-value=2.3 Score=41.04 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 043950 36 DNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFV 115 (458)
Q Consensus 36 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 115 (458)
..+.|..+...|..+..... .... . .-..+.+.+.....++.-..-+.+|..++.+..+. ..++.++.+.|.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~-~~~~-~----~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~ 113 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQD-SSSG-L----MRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL 113 (464)
T ss_pred CHHHHHHHHHHHHHHHHccc-cccH-H----HHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence 46688888888888877642 2111 1 11233333343322333333444445555533333 224567777777
Q ss_pred HhhCCC---------------------------CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHH
Q 043950 116 KLLASP---------------------------SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSM 168 (458)
Q Consensus 116 ~ll~~~---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~ 168 (458)
..+..- +.......+..+.|+...+...-+.-.-.+.+..++.......++..
T Consensus 114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d 193 (464)
T PF11864_consen 114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD 193 (464)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence 776321 11222334444555554332211111112345555555544445555
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-
Q 043950 169 LRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP- 247 (458)
Q Consensus 169 ~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~- 247 (458)
.+.++.++-.+.... ..+......++..|....... +....+..++.|++..... ...+..|..+|.++
T Consensus 194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g-------~~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG-------HSAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH-------HHHHHHHHHHHcccC
Confidence 566666666665543 233344455555555553333 5666677788888744321 12457778888432
Q ss_pred -----CccchhhHHHHHhHhhcCChhhHHHHH-hc--CChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 248 -----SPSVLTPALWTVGNIVMGDDFQTQCII-NH--GAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 248 -----~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~--~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
+..+.+.|+.++..+..+..+....-+ -. -+++.+...++.+ ++.+-.+....+.++.
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 334566788888888766532222222 12 2788888888887 7777777777777776
No 207
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.55 E-value=1.8 Score=39.46 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=112.1
Q ss_pred HHHHHHHhCCCCccchhhHHHHHhHhhc-CChhhHHHHHhc-C-ChHHHHHHhccCC----h--------hhHHHHHHHH
Q 043950 237 CRRLVELLGHPSPSVLTPALWTVGNIVM-GDDFQTQCIINH-G-AVPCLLALLIHNH----K--------KSIKKVACWT 301 (458)
Q Consensus 237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~-~-~~~~l~~ll~~~~----~--------~~v~~~a~~~ 301 (458)
++.+.+.|......+...+++.|..++. .+......++.. + -.+.+-+++.... + +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788888998888888899999999998 555666666633 1 2334555553220 1 2788887766
Q ss_pred HHHhhc-CCHHHHHHHH-HcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC---HHHHHHHHHCCChHHHHhhccCCC
Q 043950 302 ISNITA-GNREQIQAVI-DAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT---HEQIKYLVREGCIKPLCDLLLCVD 376 (458)
Q Consensus 302 l~nl~~-~~~~~~~~l~-~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~l~~~~~l~~L~~ll~~~~ 376 (458)
+..+.. +++.....++ +.+.+..+.+-+..+++++....+.++..-+.... +...-.+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666655 6666666666 46678889999999899999999999986444322 233344556677888999888777
Q ss_pred H----HHHHHHHHHHHHHHHh
Q 043950 377 P----KIVTVCLEGLENILKV 393 (458)
Q Consensus 377 ~----~v~~~~~~~l~~l~~~ 393 (458)
+ .+...+...|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 8888899998888853
No 208
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.54 E-value=2.5 Score=40.79 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 116 (458)
-..|..|+..|+..+..-+-.....+ ...--.++..+...+.|..+...|..+......... ... ..+.+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence 34566777777776554323223222 223335565655468999999999988875332111 111 11222
Q ss_pred hhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc--------------------------ccHHHH
Q 043950 117 LLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH--------------------------AKLSML 169 (458)
Q Consensus 117 ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~--------------------------~~~~~~ 169 (458)
.+. ...++-...-+.+|..|+.+..+... .+.+..+.+...+... .+....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 222 23343344556667777655544311 3445555555555211 022233
Q ss_pred HHHHHHHHHhhcCC-CCCChhhhhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC
Q 043950 170 RIATWTLSKLCKGK-PQPPFDQVRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP 247 (458)
Q Consensus 170 ~~a~~~l~~l~~~~-~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 247 (458)
...+..+.++...+ .......+.+++..+..+.. +.+......++..+-.+.....--...+ ..++..|......
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl--~~~i~vLCsi~~~- 228 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL--SPCIEVLCSIVNS- 228 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH--HHHHHHHhhHhcc-
Confidence 44445555555544 22333444555555555532 3334444555555544442211111100 1234444444332
Q ss_pred CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-----ChhhHHHHHHHHHHHhhcCCHHHHHHHH-Hc--
Q 043950 248 SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-----HKKSIKKVACWTISNITAGNREQIQAVI-DA-- 319 (458)
Q Consensus 248 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-----~~~~v~~~a~~~l~nl~~~~~~~~~~l~-~~-- 319 (458)
.+....+..++.||+..+-.. ..+..|..+|.++ .+..+.+.|...+..+..+..+....-+ -.
T Consensus 229 -~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~ 300 (464)
T PF11864_consen 229 -VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPS 300 (464)
T ss_pred -cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHH
Confidence 367778888999998644322 2356677777322 1446667888888888764422221111 12
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 320 GLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
-+++.+...++..+..+-.+.+..+.++..
T Consensus 301 ~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 301 SVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 278888888888887777788888888773
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.50 E-value=0.31 Score=49.34 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=132.4
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-CCCCccchhhHHHHHhHhhcCChhhHHHH
Q 043950 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-GHPSPSVLTPALWTVGNIVMGDDFQTQCI 273 (458)
Q Consensus 195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 273 (458)
-+.+-.-+.+.++.-+..++..+............ -...+.+..+++.. .+.+-.+...++.+|.-++..........
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 33445555688899999999888888755441111 11223444444443 44577788889999988887655443333
Q ss_pred HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCH
Q 043950 274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH 353 (458)
Q Consensus 274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 353 (458)
..++++.+++.+... ...++..+..++-.++..++. ....+.+...+.+.++.++..+...+.......++
T Consensus 334 -~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 334 -AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred -HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 347889999999888 777887776666666543221 13677888899999999999998888888765442
Q ss_pred HHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 354 EQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 354 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.....-.-.++++.++....+.+.+|+..++.++..+.+....
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 2222223346788888888899999999999999988876443
No 210
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.086 Score=45.75 Aligned_cols=145 Identities=12% Similarity=0.179 Sum_probs=100.6
Q ss_pred cHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHH
Q 043950 236 VCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315 (458)
Q Consensus 236 ~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 315 (458)
.+...+..|.+.++.....++..+..|+.++++.....+. .++-.+++-+++. ...|-+.|+.+++.+.......+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999999999999999988876665553 4667777888888 8899999999999998743344443
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHH
Q 043950 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~ 391 (458)
..+ +.+..|..--...+.=++..|-.+|..++..-.+.. ++..|...+.+.++.++..+..+..+..
T Consensus 167 ~ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 167 ELD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence 222 122222211122244478889999999987654332 3677888888888888877766555443
No 211
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.46 E-value=1.6 Score=38.25 Aligned_cols=209 Identities=13% Similarity=0.102 Sum_probs=140.3
Q ss_pred HHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh----hhHHHHH-hcCChHHHHHHhccCCh-hhHHHHHHHH
Q 043950 228 IQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD----FQTQCII-NHGAVPCLLALLIHNHK-KSIKKVACWT 301 (458)
Q Consensus 228 ~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~-~~~~~~~l~~ll~~~~~-~~v~~~a~~~ 301 (458)
.+.+.++|.+..++..+..-+.+-+..++.+..++-...- .....+. +..++..++.- -.+ +++.-.+...
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~m 148 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNM 148 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHH
Confidence 3457788999999999999888889999999988865332 1222222 22333333333 211 3333333334
Q ss_pred HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC--C-ChHHHHhhccCCCHH
Q 043950 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE--G-CIKPLCDLLLCVDPK 378 (458)
Q Consensus 302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--~-~l~~L~~ll~~~~~~ 378 (458)
+..+.++ +.....+..+.-+......++.+..++...|...+..+.........+++..+ . ..+....++.+.+.-
T Consensus 149 lrEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 149 LRECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 4444433 34455566777888899999999999999999999999876533334443332 1 134466678888888
Q ss_pred HHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCC
Q 043950 379 IVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRV 450 (458)
Q Consensus 379 v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 450 (458)
.+..++++++.++-.-.+... ....+.....++.+.+++.+++..+|-.|-.+-..|.....
T Consensus 228 tkrqs~kllg~llldr~N~~~----------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAV----------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHH----------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 889999999999876554432 25556666778999999999999999888877765554443
No 212
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.43 E-value=0.48 Score=38.57 Aligned_cols=141 Identities=19% Similarity=0.149 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCC-Chh----hHHHHHhC-------CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhh
Q 043950 83 LQYEAAWALTNIASG-TSM----NTNVVIDH-------GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLRE 150 (458)
Q Consensus 83 i~~~a~~~L~~l~~~-~~~----~~~~~~~~-------~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 150 (458)
+|..|+.+|..++.. ++. +-..++.. .-.+.+.-++.++++.+|..|+.++..+-.+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 567788888777774 111 11112211 233455557778999999999999999886543221111100
Q ss_pred -------------------CCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC--ChhhhhhhHHHHHHhhcCCChHH
Q 043950 151 -------------------EALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP--PFDQVRPALPALAQLIHLDDEEV 209 (458)
Q Consensus 151 -------------------~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~l~~l~~ll~~~~~~~ 209 (458)
..-..|+..+....+..+....+.++..+....|.. .......++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 123345555556667788899999999999887433 34455777777888889999999
Q ss_pred HHHHHHHHHHhccC
Q 043950 210 LSDACWTLSYLSYG 223 (458)
Q Consensus 210 ~~~~~~~l~~l~~~ 223 (458)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999888744
No 213
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.38 E-value=0.11 Score=34.86 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=52.1
Q ss_pred hhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcC
Q 043950 252 LTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAG 320 (458)
Q Consensus 252 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~ 320 (458)
.+.|+|+++++++ .+.-...+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4679999999987 4455566667899999999999876889999999999999864 45555554444
No 214
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.37 E-value=0.56 Score=47.58 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=132.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhh
Q 043950 115 VKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA 194 (458)
Q Consensus 115 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 194 (458)
..-+.+.+..-|..++..+.-...... ........|.+..++.....+.+..+...++.+|..++..-..........+
T Consensus 259 ~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v 337 (815)
T KOG1820|consen 259 ETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNV 337 (815)
T ss_pred HHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhh
Confidence 333445666777778888877765544 1111112344555666665677778888888899988877655556666888
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHH
Q 043950 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCI 273 (458)
Q Consensus 195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~ 273 (458)
.|.+...+......++..+..++-.++.... -....+.+...+++.++.++..+...+.......+ .....-
T Consensus 338 ~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 338 FPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred cchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 8999999998888888888777776664221 12356888899999999999998888877766444 222212
Q ss_pred HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHH
Q 043950 274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAV 316 (458)
Q Consensus 274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l 316 (458)
.-.++++.++....+. +..||..|..+++-+.. +..+.+..+
T Consensus 411 t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 411 TVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred hHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2246788888888888 89999999999988876 333444333
No 215
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.34 E-value=0.12 Score=39.93 Aligned_cols=75 Identities=12% Similarity=-0.030 Sum_probs=64.5
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~ 394 (458)
++..+..-+.++++.++..|+..|-.++.++...+...+.+.+++..|+.++.. .++.|+.+++.++.......
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 566788888899999999999999999999998888888999999999999953 56789999999988877654
Q ss_pred h
Q 043950 395 E 395 (458)
Q Consensus 395 ~ 395 (458)
.
T Consensus 119 ~ 119 (139)
T cd03567 119 P 119 (139)
T ss_pred c
Confidence 3
No 216
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.34 E-value=0.6 Score=45.44 Aligned_cols=236 Identities=12% Similarity=0.040 Sum_probs=137.0
Q ss_pred hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC---CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC-
Q 043950 148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK---PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG- 223 (458)
Q Consensus 148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~- 223 (458)
++.|.++.++.....-+...+....-.+++.+.... .........-.-|.+.+-|+..+..++..|+..+.+.-.-
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 456777777776654444334344444455554432 1111111223335566778889999999999999887632
Q ss_pred -Ch---hhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHH
Q 043950 224 -TN---DKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVAC 299 (458)
Q Consensus 224 -~~---~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~ 299 (458)
++ +....+++. -+..+.++|.++-+.+|..|..-++...+..-+.+-..+-..++..+..-+..+...+||-...
T Consensus 206 dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf 284 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF 284 (1005)
T ss_pred CCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence 11 122333333 4688999999999999999988877776432222111111123344444444443567888888
Q ss_pred HHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950 300 WTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379 (458)
Q Consensus 300 ~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 379 (458)
..|..+.... ....+.+. ++|.+-..+.+....||..+...|..+-.. . ...+..---.+.++.-|..++.++
T Consensus 285 ~gl~~~l~np--~sh~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~v---r-a~~f~~I~~~d~~l~~L~~d~~~v 357 (1005)
T KOG1949|consen 285 KGLPMILDNP--LSHPLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKAV---R-AAKFWKICPMDHILVRLETDSRPV 357 (1005)
T ss_pred cCcHHHHcCc--cchhHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHhh---h-hhhhhccccHHHHHHHHhccccHH
Confidence 8887776421 12223332 566666777888899999988888877432 1 112222233556666667777666
Q ss_pred HHHHHHHHHHHH
Q 043950 380 VTVCLEGLENIL 391 (458)
Q Consensus 380 ~~~~~~~l~~l~ 391 (458)
.+..+..|-+.+
T Consensus 358 ~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 358 SRRLVSLIFNSF 369 (1005)
T ss_pred HHHHHHHHHHhh
Confidence 666555555443
No 217
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.32 E-value=2.1 Score=39.57 Aligned_cols=276 Identities=17% Similarity=0.144 Sum_probs=137.1
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH-HhhcCCCchhh
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALG-NVAADSPGCRN 145 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~-~l~~~~~~~~~ 145 (458)
+..++.-+.+.+...+|..++--|+.-+. +++++..+...|....+++.+.. ++..+...++.++. -++.+.. ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 55566666644446889888888888888 69999999999999999999854 33324444444444 4444432 233
Q ss_pred HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc---------CCChHHHHHHHHH
Q 043950 146 LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH---------LDDEEVLSDACWT 216 (458)
Q Consensus 146 ~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~---------~~~~~~~~~~~~~ 216 (458)
.+.+.+...-++.++.-........... ... ...-.......+..+...+. .....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3334444544466663000000000000 000 00000001111111112110 1112223333333
Q ss_pred HHHhc--------------cCChhhHHHHHHhCcHHHHHHHhCC----C-------Cc-----cchhhHHHHHhHhhcCC
Q 043950 217 LSYLS--------------YGTNDKIQVVIEAGVCRRLVELLGH----P-------SP-----SVLTPALWTVGNIVMGD 266 (458)
Q Consensus 217 l~~l~--------------~~~~~~~~~~~~~~~i~~L~~ll~~----~-------~~-----~~~~~a~~~l~~l~~~~ 266 (458)
+-.++ ...+...+.+...|++..++..+.. . .+ .....++.+|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 33331 1111223445566788888888751 1 11 13344677787777666
Q ss_pred hhhHHHHHh--cCChHHHHH-HhccCC--hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh-------c----
Q 043950 267 DFQTQCIIN--HGAVPCLLA-LLIHNH--KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL-------Q---- 330 (458)
Q Consensus 267 ~~~~~~~~~--~~~~~~l~~-ll~~~~--~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll-------~---- 330 (458)
.+....+.. .+.++.... ++.... ..+....++..+.|+.-++++....+...++...+.-+. .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 655555553 233333332 232220 233456788889999887766666665443322221111 1
Q ss_pred ---cCChhhHHHHHHHHHHhhcCCC
Q 043950 331 ---DAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 331 ---~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
....+...-++.++.|++++++
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeCc
Confidence 1134566677778888877543
No 218
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.46 Score=44.99 Aligned_cols=156 Identities=16% Similarity=0.137 Sum_probs=104.1
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHh-hcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEF-LMREDYPQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
.+-+++.+.|+.+|...+..+.-.-.+.+ ..|++..|++. .++.+ .++|..|+-+|+-++.+++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCc------
Confidence 34456667788888877766665545431 23678888887 67777 7999999999998888544
Q ss_pred HhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC
Q 043950 106 IDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP 184 (458)
Q Consensus 106 ~~~~~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 184 (458)
..++..+++|. +.++.+|...+.+|+-.|.+.... . ++ .++..|..++..-+++.|+-++.-+.....
T Consensus 585 ---~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~-diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 585 ---DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----AT-DILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred ---chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HH-HHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 33555666654 578999999999999888665331 1 12 233334367777788888888887776554
Q ss_pred CCChhhhhhhHHHHHHhhcCCChH
Q 043950 185 QPPFDQVRPALPALAQLIHLDDEE 208 (458)
Q Consensus 185 ~~~~~~~~~~l~~l~~ll~~~~~~ 208 (458)
..-.....++...+.+++....++
T Consensus 654 ~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 654 PELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cccChhHHHHHHHHHHHHhhhhHh
Confidence 333344566666666666654433
No 219
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=3.4 Score=40.89 Aligned_cols=279 Identities=12% Similarity=0.088 Sum_probs=155.5
Q ss_pred CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhc--CCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHH
Q 043950 108 HGAVPIFVKLLAS--------PSDDVREQAVWALGNVAA--DSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLS 177 (458)
Q Consensus 108 ~~~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~ 177 (458)
.|+++.+...+.. .++.-.+.|++.++++.. +.+....-+.+.-.++.++..+ +++.--++..+|.+++
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 3888999998832 345566778888888865 2222222233333445555555 6666778899999999
Q ss_pred HhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHh---CcHHHHHHHhCCCCccchhh
Q 043950 178 KLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEA---GVCRRLVELLGHPSPSVLTP 254 (458)
Q Consensus 178 ~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~i~~L~~ll~~~~~~~~~~ 254 (458)
.+..+ -........+.+.....+++++-.++..+.-++..+..+.. ....... +.++.|+.+-+.-+-+....
T Consensus 486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 99544 34444556777777888888888999888888887775442 2222222 34444544444433333333
Q ss_pred HHHHH-hHhhcC----ChhhHHHHHhcCChHHHHHHhccCCh-----hhHHHHHHHHHHHhhc------CCHHHHHHHHH
Q 043950 255 ALWTV-GNIVMG----DDFQTQCIINHGAVPCLLALLIHNHK-----KSIKKVACWTISNITA------GNREQIQAVID 318 (458)
Q Consensus 255 a~~~l-~~l~~~----~~~~~~~~~~~~~~~~l~~ll~~~~~-----~~v~~~a~~~l~nl~~------~~~~~~~~l~~ 318 (458)
++..+ +..+.. .++....+. ..+++....++..+++ .+-+..|...|..+.. ..+...+++.
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv-~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le- 639 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLV-RQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLE- 639 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHH-HHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-
Confidence 33222 222211 111111111 1234444445544311 1223344444444432 2333333333
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhchh
Q 043950 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDP-KIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~~~~~l~~l~~~~~~ 396 (458)
....|..-=.+.++-.++-.+|+..+-+.+.. .++.. . .--|+.+.+.+++.++.. .-...+..++.+++.++..
T Consensus 640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~-p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 640 VSLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIE-P-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhh-h-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence 33555544456666777888888888776542 11211 1 122567778888877764 4556677899999988754
No 220
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.27 E-value=0.079 Score=51.05 Aligned_cols=134 Identities=14% Similarity=0.122 Sum_probs=100.8
Q ss_pred CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHH
Q 043950 247 PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLV 326 (458)
Q Consensus 247 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~ 326 (458)
.++.++..|..+|..+.+-+.+.+. .-+|.++..+...++|.+|.+|...++.++.......+. .-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 5678888888888888765544433 348889999985559999999999999988643333332 344688
Q ss_pred HHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 327 NVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 327 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
+-|.+++..|++.++..+.++...+- +.-+|.+..+..++.++|.++..-|--.+..+...+..
T Consensus 978 rrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 88889999999999999999987542 33467788889999999888877776666666665444
No 221
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.27 E-value=0.44 Score=44.86 Aligned_cols=237 Identities=13% Similarity=0.070 Sum_probs=133.9
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 043950 22 LEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 22 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
..-+..|+.++.|+|+.-|......|.++...- ...+..+...+...|.+.+.......-....+.+++.+..+..-.
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~--~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~p 209 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKF--PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVP 209 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCC
Confidence 345788999999999999999988999886642 334444445567778888876554566778888999988853311
Q ss_pred HHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhh
Q 043950 102 TNVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~ 180 (458)
.......-....++.+.+.+. ......-..++..+...++..... .+..+++.- ...++.-...-+.-+..+.
T Consensus 210 lk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~FL~el~~il 283 (409)
T PF01603_consen 210 LKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVLFLNELEEIL 283 (409)
T ss_dssp --HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHHHHHHHHHHH
Confidence 111111111244455554432 233444555566555555443222 234444444 3333332333344445554
Q ss_pred cCCCCCC-hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHH--hCcHHHHHHHhCCC-----Cccch
Q 043950 181 KGKPQPP-FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIE--AGVCRRLVELLGHP-----SPSVL 252 (458)
Q Consensus 181 ~~~~~~~-~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~-----~~~~~ 252 (458)
...+... ......+...+...+.+.+-.+.+.|+....| +.....+.+ ..+++.+..-+... +..++
T Consensus 284 ~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 284 EVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4332222 22335667778888889999999888876533 212221111 13566666666441 56789
Q ss_pred hhHHHHHhHhhcCChhhHH
Q 043950 253 TPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 253 ~~a~~~l~~l~~~~~~~~~ 271 (458)
..|..++..+...++....
T Consensus 359 ~~a~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHH
Confidence 9999999888877765543
No 222
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=95.24 E-value=0.62 Score=43.05 Aligned_cols=139 Identities=17% Similarity=0.172 Sum_probs=81.3
Q ss_pred HHHHHhhcCCC-hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC------CCCccchhhHHHHHhHhhcCChh
Q 043950 196 PALAQLIHLDD-EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG------HPSPSVLTPALWTVGNIVMGDDF 268 (458)
Q Consensus 196 ~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~~a~~~l~~l~~~~~~ 268 (458)
+.+..-+...| ..-+..|+..+..++.........++ ...+..++. ..++.-+..|+..++.++.....
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t 288 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGST 288 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcc
Confidence 33444444333 44566777888888754333222222 122223332 24567778899999999865422
Q ss_pred ------------hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhh
Q 043950 269 ------------QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDI 336 (458)
Q Consensus 269 ------------~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~ 336 (458)
....++...++|.|. - ..+..+-+|..|++.+..+-..-+. +.+. +++|.++..|.+++.-|
T Consensus 289 ~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~-~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 289 TKSGVTQTNELVDVVDFFSQHVLPELQ-P-DVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHTTSS-HHH
T ss_pred ccCCcccccccccHHHHHHHHhHHHhc-c-cCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHhCCCCcch
Confidence 234444555666665 1 2222678899999999999874332 2222 38999999999999999
Q ss_pred HHHHHHHH
Q 043950 337 KKEAALAI 344 (458)
Q Consensus 337 ~~~a~~~L 344 (458)
...|+.++
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 99998875
No 223
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=3.7 Score=40.97 Aligned_cols=304 Identities=12% Similarity=0.099 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh--CCChHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID--HGAVPIF 114 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L 114 (458)
--+++..++.+.+..+..-....+. -.-..+++++++.++.-++..+++++.-...+-.-..+.+.. .+....+
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~----l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKP----LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHH----HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 4466677778777765321111111 134567888888865778889999998887743333333321 2444555
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHhhcCCCc-hhhHHhhhCCHHHHHHHhc-cc-ccHHHHHHHHHHHHHhhcCCCCCChhh
Q 043950 115 VKLLAS-PSDDVREQAVWALGNVAADSPG-CRNLVLREEALIPLLAQLN-EH-AKLSMLRIATWTLSKLCKGKPQPPFDQ 190 (458)
Q Consensus 115 ~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~l~~~l~-~~-~~~~~~~~a~~~l~~l~~~~~~~~~~~ 190 (458)
.++++. +.-+.+..++.+++.+...-.+ .+... +.+-.++..+- .+ +.+-++...+.++.++...-.......
T Consensus 577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~---~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~ 653 (978)
T KOG1993|consen 577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYA---STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF 653 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence 666654 4556777788888877643222 11111 12223333332 22 334455666788889887654444444
Q ss_pred hhhhHHHHHHhhcCCC---hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh
Q 043950 191 VRPALPALAQLIHLDD---EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD 267 (458)
Q Consensus 191 ~~~~l~~l~~ll~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 267 (458)
...++|.+-.-...+. ....+.++..=.....+.+.....+. +++|.+...+....+. ...++.++....--..
T Consensus 654 ~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd~ 730 (978)
T KOG1993|consen 654 YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLDN 730 (978)
T ss_pred hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhcc
Confidence 4555555444443222 23344443332222223332222232 4677777777654433 3334444433222122
Q ss_pred hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc--cCChhhHHHHHHHHH
Q 043950 268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ--DAEFDIKKEAALAIA 345 (458)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~--~~~~~~~~~a~~~L~ 345 (458)
.....-...|+.+.+.+++.+- ..+-....+.++..+...++ -.......++++.+...+- .+.+.+...-+..++
T Consensus 731 ~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva 808 (978)
T KOG1993|consen 731 TVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA 808 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence 2222223347788888888655 44455556666666665553 5566667788888877653 335667777777777
Q ss_pred HhhcCCC
Q 043950 346 NATVRGT 352 (458)
Q Consensus 346 ~l~~~~~ 352 (458)
.+.....
T Consensus 809 Ri~l~n~ 815 (978)
T KOG1993|consen 809 RISLRNP 815 (978)
T ss_pred HHHhcCh
Confidence 7776543
No 224
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.02 E-value=0.17 Score=39.52 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=65.5
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhch
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~ 395 (458)
++..+..-+.+.++.++..|+..|-.++.++...+...+.+.+++..|..++.. .++.|+..++..+........
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 566777788889999999999999999999999998899999999999999987 788999999999888765433
No 225
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.92 E-value=0.19 Score=33.78 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950 40 QLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG 109 (458)
Q Consensus 40 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~ 109 (458)
...|++++.++.+. +.....+.+.++++.++++....+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 45789999999775 45566666779999999999877667999999999999998 677777666554
No 226
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.92 E-value=3.3 Score=38.72 Aligned_cols=230 Identities=13% Similarity=0.089 Sum_probs=134.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhcCC
Q 043950 71 FVEFLMREDYPQLQYEAAWALTNIASGT---SMNTNVVIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAADS 140 (458)
Q Consensus 71 L~~ll~~~~~~~i~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~ 140 (458)
+..++...+ ++-|..|+.....+.... ...++.+++.-+.+.+-+++.+ ++.-.+..++..|.-+|++.
T Consensus 16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 556666666 588899999999988743 2345667888778999998875 23456667777888888765
Q ss_pred Cch-hhHHhhhCCHHHHHHHhcccccHH------HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCh-HHHHH
Q 043950 141 PGC-RNLVLREEALIPLLAQLNEHAKLS------MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDE-EVLSD 212 (458)
Q Consensus 141 ~~~-~~~~~~~~~l~~l~~~l~~~~~~~------~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~ 212 (458)
+-. ...++ +.+|.++..+....+++ +...+..+|..++...+........|.++.+.++-.-.+. .-..-
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 321 12222 36888888887655554 7888999999999886666666668999999876654332 12222
Q ss_pred HHHHHHHhc----cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh--hh----HHHHHhcCChHHH
Q 043950 213 ACWTLSYLS----YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD--FQ----TQCIINHGAVPCL 282 (458)
Q Consensus 213 ~~~~l~~l~----~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~--~~----~~~~~~~~~~~~l 282 (458)
++..+.-.. ..+.. ...+. .++..+..-+...+...+-..|+.|..+..... .. .....-......+
T Consensus 173 al~Vlll~~~~~~cw~e~-~~~fl--ali~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~ 249 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSET-IERFL--ALIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGV 249 (698)
T ss_pred HHHHHHHHHHhcccCcCC-HHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHH
Confidence 222222111 12221 11121 124444444445566677788888875543222 11 1111111223334
Q ss_pred HHHhccCChhhHHHHHHHHHHHhh
Q 043950 283 LALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 283 ~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
..+|++.-.+.-|.-|.....|+.
T Consensus 250 ~~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 250 VAILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred HHHHhcccCchhcChHHHHHHHHH
Confidence 555555444455556666666665
No 227
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.88 E-value=3.9 Score=39.34 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=81.6
Q ss_pred hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh
Q 043950 188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD 267 (458)
Q Consensus 188 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 267 (458)
...+.+.+..+...+.++|..++..++..+..++..-.+ +...+-.|++..|.+-+-+.++.+|..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 456688888888888999999999999999988855443 3345667888888888888899999999999988853221
Q ss_pred hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHH
Q 043950 268 FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTI 302 (458)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l 302 (458)
.- +..+...+..+++.+++.+||+.|..-+
T Consensus 165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 11 1123456778888877889998765433
No 228
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.82 E-value=1.7 Score=41.26 Aligned_cols=165 Identities=12% Similarity=0.067 Sum_probs=115.0
Q ss_pred hhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc----cchhhHHHHHhHhhcCChh
Q 043950 193 PALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP----SVLTPALWTVGNIVMGDDF 268 (458)
Q Consensus 193 ~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~----~~~~~a~~~l~~l~~~~~~ 268 (458)
.....+.+.+.+++...+..++..+..++. +......++...++..|.+++.+... .+...++.+++.+....-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 344567788888888887778888888874 44466778888999999999988643 455566666666654321
Q ss_pred hHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 269 QTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
.....+...++..+..+.+-. .+..+-..|...+-++..++....+.+.+.--+..|+..++..+..++..|+..+..+
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 222222233444444444221 1446677888888888887777778888888899999999999999999888888888
Q ss_pred hcCCCHHHHHHH
Q 043950 348 TVRGTHEQIKYL 359 (458)
Q Consensus 348 ~~~~~~~~~~~l 359 (458)
......+.++.+
T Consensus 241 ~~~a~~~~R~~~ 252 (713)
T KOG2999|consen 241 FRKAPDDKRFEM 252 (713)
T ss_pred HhhCChHHHHHH
Confidence 776655544443
No 229
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.78 E-value=3.2 Score=37.93 Aligned_cols=170 Identities=15% Similarity=0.124 Sum_probs=121.3
Q ss_pred HHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHc--CChHHHHHHhccC-----C--------h
Q 043950 271 QCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDA--GLIVPLVNVLQDA-----E--------F 334 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~--~~~~~L~~ll~~~-----~--------~ 334 (458)
+.+++.. ++.+...|.+. ...+...+...+..++. ........+... --.+.+-+++... + +
T Consensus 51 ~~iL~~~-~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 3344333 78888999888 77788899999999998 666777776642 1233444444211 1 2
Q ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHH-HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHH
Q 043950 335 DIKKEAALAIANATVRGTHEQIKYLV-REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARL 413 (458)
Q Consensus 335 ~~~~~a~~~L~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 413 (458)
.+|...+..+..+...+++.....++ +.+.+..+..-+..++++++...+..+..-+-.++.... .....
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r---------~~K~~ 199 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR---------STKCK 199 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh---------hhhhh
Confidence 89999999999999888877766665 567788899989888889999999999865544444321 12333
Q ss_pred HHhcchHHHHHhhhcCCCh----HHHHHHHHHHHHhcCCCCC
Q 043950 414 VEEDEGFKKIEGLKSHDNN----GIREKAVKILETYWCGRVV 451 (458)
Q Consensus 414 ~~~~~~~~~l~~l~~~~~~----~v~~~a~~~l~~~~~~~~~ 451 (458)
+-+...+..|..|-...++ .+.+.+...+..+.-+...
T Consensus 200 ~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 200 LFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred hcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence 3366678889988777777 8999999999888754433
No 230
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.76 E-value=2.6 Score=36.87 Aligned_cols=222 Identities=12% Similarity=0.026 Sum_probs=128.2
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 28 MVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR--EDYPQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 28 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
|=..|.++|+..|..|+..|..++..-.... ....-+..|+.++.+ .+ ......++..+..+... .......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~----L~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF----LSRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh----ccHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhh
Confidence 4456889999999999999999887642221 111113444443322 22 33344446666666642 2211111
Q ss_pred HhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCCCchhhHHh--hhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 106 IDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAADSPGCRNLVL--REEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 106 ~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
...++..+.+-.. +.....|..+...+..+...... .+. ..+.+..++..+....||.-.-.+...+..+..
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~---~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE---ALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH---HHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 0112233333222 23467788888888888755322 222 234677888888788899988888888888877
Q ss_pred CCCCCChhhhhhhHHHHHHhhc-----C-CCh--HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchh
Q 043950 182 GKPQPPFDQVRPALPALAQLIH-----L-DDE--EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLT 253 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~ll~-----~-~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 253 (458)
.-+. ....+.....+..+.- . +|+ -.++..-..|.+.....+... .-.++.|++-|.++...++.
T Consensus 154 ~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~ 226 (262)
T PF14500_consen 154 EFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKL 226 (262)
T ss_pred hccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHH
Confidence 6442 3333444444433332 1 222 123344444544443444332 23679999999999999999
Q ss_pred hHHHHHhHhhcCC
Q 043950 254 PALWTVGNIVMGD 266 (458)
Q Consensus 254 ~a~~~l~~l~~~~ 266 (458)
.++.+|...+...
T Consensus 227 D~L~tL~~c~~~y 239 (262)
T PF14500_consen 227 DSLQTLKACIENY 239 (262)
T ss_pred HHHHHHHHHHHHC
Confidence 9999998876543
No 231
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.72 E-value=3.3 Score=41.98 Aligned_cols=194 Identities=18% Similarity=0.121 Sum_probs=112.1
Q ss_pred HHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHH--HHHHhhcCCCh-H
Q 043950 132 ALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALP--ALAQLIHLDDE-E 208 (458)
Q Consensus 132 ~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~--~l~~ll~~~~~-~ 208 (458)
++++++...+.....+.+.|++..+...+..-...++...+...+.+++...+..........+. ....++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 55677777776667788899999999999766777889999999999987653333322222222 22233333333 5
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHH-HHHHhc
Q 043950 209 VLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPC-LLALLI 287 (458)
Q Consensus 209 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-l~~ll~ 287 (458)
.-..++..+..+....++.. ....+..+...+......-+...........+.. +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~-------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTT-------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCc-------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence 55666666666654433211 1112222322222222111111111111222333 556666
Q ss_pred cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHH
Q 043950 288 HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAI 344 (458)
Q Consensus 288 ~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L 344 (458)
.+..+.....|.|++.+++..++++.....+.++++.+.+.-... ..+++..+...+
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 555778889999999999998888877788888888777654322 344444444433
No 232
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.69 E-value=0.25 Score=38.58 Aligned_cols=75 Identities=12% Similarity=0.044 Sum_probs=65.0
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
++..+..-+.++++.++..|+..|-.++.++...+...+.+.+++..|..++. ..++.|+.+++.++........
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 56778888888999999999999999999988888888889999999999887 5677899999999988876544
No 233
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.63 E-value=1.1 Score=36.62 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=89.2
Q ss_pred chhhHHHHHhHhhcC-ChhhH----HHHH------hcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHc
Q 043950 251 VLTPALWTVGNIVMG-DDFQT----QCII------NHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDA 319 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~-~~~~~----~~~~------~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~ 319 (458)
+|..|+.+|..++.. ++... ..++ ..+.-+.|+..+-.++++++|..|+.++..+..+...+...--+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777765 21111 1111 122334444444444499999999999999998876555443321
Q ss_pred C-------------------ChHHHHHHhccC-ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHH
Q 043950 320 G-------------------LIVPLVNVLQDA-EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKI 379 (458)
Q Consensus 320 ~-------------------~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 379 (458)
+ +-..|+..+..+ +..+....+.++..++........+.=.-..++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 122344445544 67788889999999988765444322011123455556667889999
Q ss_pred HHHHHHHHHHHHHhch
Q 043950 380 VTVCLEGLENILKVGE 395 (458)
Q Consensus 380 ~~~~~~~l~~l~~~~~ 395 (458)
+..++.+++.++...+
T Consensus 162 ~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 162 RVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999998876544
No 234
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.57 E-value=2.9 Score=36.58 Aligned_cols=225 Identities=14% Similarity=0.055 Sum_probs=135.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-cccHHHHHHHHHHHHHhhcCCCCCChhh
Q 043950 112 PIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-HAKLSMLRIATWTLSKLCKGKPQPPFDQ 190 (458)
Q Consensus 112 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 190 (458)
..|-..|.++++.+|..++..|+.+...-+.. .....-+..++..+.+ -.|......++.++..|.... ......
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~ 77 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPES 77 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhh
Confidence 34566788899999999999999888665431 1222334555555532 134555555677777777443 222233
Q ss_pred hhhhHHHHHHhhc--CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCCh
Q 043950 191 VRPALPALAQLIH--LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDD 267 (458)
Q Consensus 191 ~~~~l~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~ 267 (458)
...++..+..-.. +.....|..+...+..+..+...... -...+++..++..+..+ +|+-...++..+..+...-+
T Consensus 78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3444444444332 23467788888888888765443332 12235777788877764 66666666666666654333
Q ss_pred hhHHHHHhcCChHHHHHHhc--------cCC-hh--hHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhh
Q 043950 268 FQTQCIINHGAVPCLLALLI--------HNH-KK--SIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDI 336 (458)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~--------~~~-~~--~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~ 336 (458)
+ ....+.+.+.+. .++ ++ -.+..-..+|.+....++.... -.+|.|++-|.+....+
T Consensus 157 ------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~ 224 (262)
T PF14500_consen 157 ------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSV 224 (262)
T ss_pred ------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHH
Confidence 1 233444444442 111 22 2344555566665555544322 37899999999999999
Q ss_pred HHHHHHHHHHhhcCCCH
Q 043950 337 KKEAALAIANATVRGTH 353 (458)
Q Consensus 337 ~~~a~~~L~~l~~~~~~ 353 (458)
|..++.+|..++...+.
T Consensus 225 K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHHHHHCCH
Confidence 99999999998765443
No 235
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=94.57 E-value=0.2 Score=39.18 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=64.9
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcC-CChHHHHHHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSH-DNNGIREKAVKIL 442 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l 442 (458)
++..|..-+.+.++.++..++.+|..+++..... |...+...+.++.|..+... .+++|++++..++
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4667777788899999999999999999875543 67777788889999988766 7899999999999
Q ss_pred HHhcCCCCCCCCCC
Q 043950 443 ETYWCGRVVGPQLG 456 (458)
Q Consensus 443 ~~~~~~~~~~~~~~ 456 (458)
......-..+|+|+
T Consensus 106 ~~W~~~f~~~~~l~ 119 (144)
T cd03568 106 KQWADEFKNDPSLS 119 (144)
T ss_pred HHHHHHhCCCcccH
Confidence 88755555556553
No 236
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.61 Score=45.40 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=102.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Ch----hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCC
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASG-TS----MNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSP 141 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-~~----~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 141 (458)
.=|.|.+-|+..+ .++|..|+..+.++--- +| +..+.+++.. ...+-.+|.++.+.+|..|+..+..+...-.
T Consensus 175 ~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 175 YKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 3455666677888 79999999999987541 22 3345555544 6788999999999999999888877754321
Q ss_pred ch--hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950 142 GC--RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 142 ~~--~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 219 (458)
.. ...+. ..+.+++.-+..+...+++-.....+..+..++ ........++|.+-..+.++...++..+...+..
T Consensus 253 e~iP~~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 253 EMIPPTILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHcCHHHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 10 01111 134444444545566678888888888887763 3445567888888889999999999888887776
Q ss_pred hc
Q 043950 220 LS 221 (458)
Q Consensus 220 l~ 221 (458)
+-
T Consensus 329 ik 330 (1005)
T KOG1949|consen 329 IK 330 (1005)
T ss_pred HH
Confidence 64
No 237
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.29 E-value=3.2 Score=35.78 Aligned_cols=202 Identities=18% Similarity=0.129 Sum_probs=115.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLV 147 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 147 (458)
++.|+.-+....+++.+...+..|..++.++..... -++..|..+.+.+....+..+.+.+..+-..++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 445555344444489999999999999996422222 235677777777777776677777777765443321
Q ss_pred hhhCCHHHHHHHhc---------ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhh-cCCChHHHHHHHHHH
Q 043950 148 LREEALIPLLAQLN---------EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLI-HLDDEEVLSDACWTL 217 (458)
Q Consensus 148 ~~~~~l~~l~~~l~---------~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~~~~~l 217 (458)
+.+..++.... .+...+.......++..+|...|. ....+++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 23444444410 112233444445678888887665 4577888888888 788888999999999
Q ss_pred HHhccCChhhHHHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccC
Q 043950 218 SYLSYGTNDKIQVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHN 289 (458)
Q Consensus 218 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~ 289 (458)
..++...- .+ + ......+.+-+..+ .+.+....+..+..+....- ..........++..+.++..+.
T Consensus 147 ~~Lc~~~v--vd-~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEV--VD-F--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhh--cc-H--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 99983221 11 1 12334444444433 23333333333333322211 1111223445677777777666
No 238
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.28 E-value=7.3 Score=39.93 Aligned_cols=240 Identities=15% Similarity=0.151 Sum_probs=135.5
Q ss_pred HcCCHHHHHHhhcCCC----CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC----CCC----HHHHHHHHH
Q 043950 64 QAGVVPRFVEFLMRED----YPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLA----SPS----DDVREQAVW 131 (458)
Q Consensus 64 ~~~~i~~L~~ll~~~~----~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a~~ 131 (458)
+.|++..++.++.+.. ..+.....+..|...+. -+.+|+.+++.|+++.|+..+. ... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 4578888888887633 13556667777777777 6899999999999999998874 333 677777777
Q ss_pred HHHHhhcCCCc--hh---hHHh-------hhCCHHHHHHHhccc---ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHH
Q 043950 132 ALGNVAADSPG--CR---NLVL-------REEALIPLLAQLNEH---AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALP 196 (458)
Q Consensus 132 ~L~~l~~~~~~--~~---~~~~-------~~~~l~~l~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~ 196 (458)
++..+...... .. .... ....+..+++.+... .++.+....+.+|-.|+.+........+..+-|
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F~p 273 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHFKP 273 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHHHH
Confidence 77766633211 00 0000 112266667776432 367888899999999998754333322233322
Q ss_pred HHHHhhc--CCChHHHHHHHHHHHHhccC----C--hhhHHHHHHhCcHHHHHHHhCCCCc----------------cch
Q 043950 197 ALAQLIH--LDDEEVLSDACWTLSYLSYG----T--NDKIQVVIEAGVCRRLVELLGHPSP----------------SVL 252 (458)
Q Consensus 197 ~l~~ll~--~~~~~~~~~~~~~l~~l~~~----~--~~~~~~~~~~~~i~~L~~ll~~~~~----------------~~~ 252 (458)
.+ .+=. .....--...+.+++.++.. . ....+.+++.|++...+..+...-+ .-.
T Consensus 274 ~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 22 1111 01111112235555555532 1 2345678889999988887754221 122
Q ss_pred hhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 253 TPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 253 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
..++..|.-++.++... +..+..++++.+..+=+...+..+-.-|-.+|-.+.
T Consensus 353 p~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 353 PYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALA 405 (802)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence 34567777777766544 444556667444333332213334333333443333
No 239
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.17 E-value=1.2 Score=43.51 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=114.5
Q ss_pred CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950 205 DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 283 (458)
Q Consensus 205 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 283 (458)
+|+.++..|.-++..+..-+.+... .-+|.++..+. +++|.+|.+|.-.++.++-......+. .-..+.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 6888988888888877654443222 34688888887 789999999999998886543322222 244567
Q ss_pred HHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC
Q 043950 284 ALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREG 363 (458)
Q Consensus 284 ~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~ 363 (458)
.-|.+. +..||+.+..++.++..... +--.|-++.+...|.++|.++...|-..+..++...+. +-+|
T Consensus 978 rrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt------~yn~ 1045 (1128)
T COG5098 978 RRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT------MYNG 1045 (1128)
T ss_pred HHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc------hhhh
Confidence 777777 89999999999999875321 11247888999999999999999999999999875432 2234
Q ss_pred ChHHHHhhccC---CCHHHHHHHHHHHHHHHHhch
Q 043950 364 CIKPLCDLLLC---VDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 364 ~l~~L~~ll~~---~~~~v~~~~~~~l~~l~~~~~ 395 (458)
+++.+..+-.+ .+.. -+..++.|..++....
T Consensus 1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ker 1079 (1128)
T COG5098 1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKER 1079 (1128)
T ss_pred hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHH
Confidence 44444333321 1222 3455666666665443
No 240
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.16 E-value=2.4 Score=40.23 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=110.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCC---HHHHHHHHHHHHHHcCCChhh
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDY---PQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---~~i~~~a~~~L~~l~~~~~~~ 101 (458)
...+.+.+.++++..+..|+..|..+..+ .....+++...++..|..++.+... .++...+++++..+..+.--.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 45778889999999999999998888443 6778889999999999999988762 345555555555554432110
Q ss_pred HHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHh
Q 043950 102 TNVVIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKL 179 (458)
Q Consensus 102 ~~~~~~~~~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l 179 (458)
- ..+...++.....+.+. .+..+-..|+..|-++...++..++.+.+.-.+..++.++ ...+..+...|...+..+
T Consensus 163 W-~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 163 W-ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL 240 (713)
T ss_pred e-eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 0 11122233444444422 3455667788889898888887788888888899999999 666777778888888888
Q ss_pred hcCCCCC
Q 043950 180 CKGKPQP 186 (458)
Q Consensus 180 ~~~~~~~ 186 (458)
....+..
T Consensus 241 ~~~a~~~ 247 (713)
T KOG2999|consen 241 FRKAPDD 247 (713)
T ss_pred HhhCChH
Confidence 7765433
No 241
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.16 E-value=4.7 Score=37.37 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=59.6
Q ss_pred hccHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCH-HHHHHHHHHHHHHcCCCh
Q 043950 22 LEILPAMVAGVWS-DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYP-QLQYEAAWALTNIASGTS 99 (458)
Q Consensus 22 ~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-~i~~~a~~~L~~l~~~~~ 99 (458)
.+.+..++..+.+ ....+|..++..|+.-+.. +..++.+...|.+..+++.+.+..+. -....++.++.-++.+ .
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~--~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~ 96 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCAD--PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-G 96 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC--HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-C
Confidence 3457788888884 4577888888888877554 68899999999999999999554423 3333444444444442 3
Q ss_pred hhHHHHHhCCChHHHHHhhC
Q 043950 100 MNTNVVIDHGAVPIFVKLLA 119 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~ 119 (458)
.....+.+.+....++.++.
T Consensus 97 ~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 97 LNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred cchhhhhchhHHHHHHHHhc
Confidence 33333333444444455554
No 242
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.12 E-value=2.3 Score=42.95 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=94.4
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhhcCC--C-------chhhHHhhhCCHHHHHHHhc---ccccHHHHHHHHH
Q 043950 111 VPIFVKLLAS----PSDDVREQAVWALGNVAADS--P-------GCRNLVLREEALIPLLAQLN---EHAKLSMLRIATW 174 (458)
Q Consensus 111 i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~--~-------~~~~~~~~~~~l~~l~~~l~---~~~~~~~~~~a~~ 174 (458)
+..+..++++ .++.++..|+.+++.+.... . ...........++.+...+. ...+.+-+..++.
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 5566666654 56778888888888776311 0 00011122235666666664 3445577788899
Q ss_pred HHHHhhcCCCCCChhhhhhhHHHHHHhhcCC---ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--Cc
Q 043950 175 TLSKLCKGKPQPPFDQVRPALPALAQLIHLD---DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SP 249 (458)
Q Consensus 175 ~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~ 249 (458)
+|+|+-. ...++.+.+++... +..++..|++++..++...+.. +.+.+.+++.+. +.
T Consensus 513 aLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~ 574 (618)
T PF01347_consen 513 ALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDP 574 (618)
T ss_dssp HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-H
T ss_pred HhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCCh
Confidence 9999843 35777888888766 6788999999999887555533 335666776653 45
Q ss_pred cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHH
Q 043950 250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVAC 299 (458)
Q Consensus 250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~ 299 (458)
++|..|+..|... +|.. ..+..+...+..+++.+|.....
T Consensus 575 EvRiaA~~~lm~~---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 575 EVRIAAYLILMRC---NPSP-------SVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp HHHHHHHHHHHHT------H-------HHHHHHHHHHTT-S-HHHHHHHH
T ss_pred hHHHHHHHHHHhc---CCCH-------HHHHHHHHHHhhCchHHHHHHHH
Confidence 6888887666432 3322 24666777777665666655433
No 243
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.01 E-value=0.32 Score=39.24 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=80.3
Q ss_pred CcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc---CCH
Q 043950 235 GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA---GNR 310 (458)
Q Consensus 235 ~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~---~~~ 310 (458)
.....+..++++++..-|..++..+...+..++ +....- -...+..++.+|+.+....+++.++.++..+.. +.+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~-~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSH-GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 467788899999988899999999988887653 222111 135788899999988677889999999998874 455
Q ss_pred HHHHHHHH---cCChHHHHHHhccCChhhHHHHHHHHHHhhcCC
Q 043950 311 EQIQAVID---AGLIVPLVNVLQDAEFDIKKEAALAIANATVRG 351 (458)
Q Consensus 311 ~~~~~l~~---~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 351 (458)
+...++.. .++++.++.+++. ......++.+|..+....
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 54444443 2345555555554 567778888888887643
No 244
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.92 E-value=14 Score=41.78 Aligned_cols=270 Identities=12% Similarity=0.035 Sum_probs=144.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCC--CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 28 MVAGVWSDDNSLQLEATTQFRILLSIER--SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 28 l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
+++.-.+.+..+...|+..|++++..-- .+....=.+..++..|..++.+....++++..+.++.++..... .-
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~n 1217 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NN 1217 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hh
Confidence 3443345567889999999988765321 11111223456788888888776668999999999999876322 22
Q ss_pred HhCCChHHHHHhhC----CCCHHHHHHHHHHHHHhhcCCCc-h----hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHH
Q 043950 106 IDHGAVPIFVKLLA----SPSDDVREQAVWALGNVAADSPG-C----RNLVLREEALIPLLAQLNEHAKLSMLRIATWTL 176 (458)
Q Consensus 106 ~~~~~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l 176 (458)
+.. +.+.+..++. ...+.+.+.|..++..+..+.-. . ...+. ..+..+.+...+..+.++--.++..|
T Consensus 1218 IkS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL 1294 (1780)
T PLN03076 1218 VKS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFL 1294 (1780)
T ss_pred hhc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHH
Confidence 333 4666666665 36688888898888877644211 0 01111 23444444443333344444444444
Q ss_pred HHh----hcCC-----C------------------C------CChh---hhhhhHHHHHHhhcCCChHHHHHHHHHHHHh
Q 043950 177 SKL----CKGK-----P------------------Q------PPFD---QVRPALPALAQLIHLDDEEVLSDACWTLSYL 220 (458)
Q Consensus 177 ~~l----~~~~-----~------------------~------~~~~---~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l 220 (458)
+++ .... . . .... .--.++..+..+..+...+||..|+..|..+
T Consensus 1295 ~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076 1295 RFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 433 1110 0 0 0000 1122333444455678899999999998877
Q ss_pred ccCCh-----hhHHHHHHhCcHHHHHHHhCCC----------------C-c------cchhhHHHHHhHhhcCCh---hh
Q 043950 221 SYGTN-----DKIQVVIEAGVCRRLVELLGHP----------------S-P------SVLTPALWTVGNIVMGDD---FQ 269 (458)
Q Consensus 221 ~~~~~-----~~~~~~~~~~~i~~L~~ll~~~----------------~-~------~~~~~a~~~l~~l~~~~~---~~ 269 (458)
..... +.-..+.. +++-.++..++.. + . -+...+..+|..++.--. +.
T Consensus 1375 L~~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~ 1453 (1780)
T PLN03076 1375 LRNHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPT 1453 (1780)
T ss_pred HHHhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 73322 12222222 3444444444310 0 0 012333334444432111 22
Q ss_pred HHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 270 TQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
...++ .+++..|..++..+ +..+.+.+..++.++..
T Consensus 1454 L~~~L-~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1454 VNPLL-KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHH-HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 22222 24556666666666 77888888888888875
No 245
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.80 E-value=0.34 Score=34.46 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=58.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
.+...++.+.++.+.+|-+++..|+++.... + .......+++..+...+++++ +-+-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH
Confidence 4667788889999999999999999998875 3 222223467888889999998 79999999999999985443
No 246
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=93.74 E-value=1.6 Score=32.77 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=69.0
Q ss_pred HhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCch
Q 043950 328 VLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDV 407 (458)
Q Consensus 328 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 407 (458)
..++.+...-.....=+++++.. +...... +++.|..-|+.+++.|+.+++.+|..++..+...
T Consensus 9 ATsdd~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~---------- 72 (122)
T cd03572 9 ATSDDDEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD---------- 72 (122)
T ss_pred HhcCCCCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH----------
Confidence 33333333444455556666654 3233333 4778888888899999999999999999877643
Q ss_pred hHHHHHHH-hcchHHHHHhhhcC--------CChHHHHHHHHHHHHhcCCC
Q 043950 408 NQYARLVE-EDEGFKKIEGLKSH--------DNNGIREKAVKILETYWCGR 449 (458)
Q Consensus 408 ~~~~~~~~-~~~~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~ 449 (458)
|...+. ....++.+.+.... ++..|+..|..++.-.|..+
T Consensus 73 --f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 73 --FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred --HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 343333 45556666666543 33568999999999998765
No 247
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.68 E-value=5.1 Score=42.65 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---cc---ccHHHHHHHHHHHHHhhcCC-CCCChhhhh
Q 043950 120 SPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---EH---AKLSMLRIATWTLSKLCKGK-PQPPFDQVR 192 (458)
Q Consensus 120 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~~---~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~ 192 (458)
++..+++.....++.++.....+ .+.. | -+.+++.+. +. ....+.+.+..++.-++.+. +........
T Consensus 853 ~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 35567778888888888755432 1221 2 344444442 22 24567788888888888876 666777778
Q ss_pred hhHHHHHHhhc-CCChHHHHHHHHHHHHhc
Q 043950 193 PALPALAQLIH-LDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 193 ~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~ 221 (458)
+++..+..+-+ ..|..+--.++..+++++
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 88888887776 456777777777777765
No 248
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.68 E-value=0.3 Score=34.69 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=63.5
Q ss_pred HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950 237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV 316 (458)
Q Consensus 237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 316 (458)
+...+..+.++...+|..++..|..+..... ....-..+++..+...++++ |+-|=-.|..+++.++...++.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~~---- 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPDE---- 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChHH----
Confidence 4566777888999999999999999998666 11122346788899999999 8889999999999999754442
Q ss_pred HHcCChHHHHHHhcc
Q 043950 317 IDAGLIVPLVNVLQD 331 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~ 331 (458)
+++.|++...+
T Consensus 78 ----vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 ----VLPILLDEYAD 88 (92)
T ss_pred ----HHHHHHHHHhC
Confidence 55666665544
No 249
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.66 E-value=5.7 Score=37.77 Aligned_cols=275 Identities=11% Similarity=0.075 Sum_probs=128.0
Q ss_pred HHHHHHhhcC---CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCch
Q 043950 68 VPRFVEFLMR---EDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGC 143 (458)
Q Consensus 68 i~~L~~ll~~---~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~ 143 (458)
+..|+.++.. .+++.+-...++++.-+-.+-......+++ ..+..+....++ .++..-.....+++.+.+.....
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4445555533 222445555556655544433334343332 233444444444 45666666666666665332111
Q ss_pred -hh--HHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC-CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHH
Q 043950 144 -RN--LVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP-QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSY 219 (458)
Q Consensus 144 -~~--~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 219 (458)
.+ .-.+...++.+...| ..+-.++.-++...++.+.+..+ .........++|.+..-.-.....-.-...+.|..
T Consensus 107 ~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a 185 (435)
T PF03378_consen 107 DPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQA 185 (435)
T ss_dssp GHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHH
Confidence 11 122344566666666 44445677777788887776654 22223445555554422221111122333334444
Q ss_pred hccCChhhHHHHHHh----CcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhh-HHHHHhcCChHHHHHHhccCChhhH
Q 043950 220 LSYGTNDKIQVVIEA----GVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNHKKSI 294 (458)
Q Consensus 220 l~~~~~~~~~~~~~~----~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~v 294 (458)
.....+... ... +++..+-+++.+... -..++..|..+...-+.. .+..+ ..++..+..-|++....+.
T Consensus 186 ~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf 259 (435)
T PF03378_consen 186 YIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKF 259 (435)
T ss_dssp HHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHH
T ss_pred HHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHH
Confidence 332222221 111 344445566666432 245777777776554432 22211 2356666666665545666
Q ss_pred HHHHHHHHHHhhc-CCHHHHHHHHH---cCChHHHHHHh-----cc-CChhhHHHHHHHHHHhhcC
Q 043950 295 KKVACWTISNITA-GNREQIQAVID---AGLIVPLVNVL-----QD-AEFDIKKEAALAIANATVR 350 (458)
Q Consensus 295 ~~~a~~~l~nl~~-~~~~~~~~l~~---~~~~~~L~~ll-----~~-~~~~~~~~a~~~L~~l~~~ 350 (458)
.+.-+..++.++. .++...-..++ .|++..++.-+ +. ....-|+-++.++.++...
T Consensus 260 ~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 260 VKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 6666666666654 34444444443 56555555522 11 1233466677777776643
No 250
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.60 E-value=0.89 Score=37.51 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=65.9
Q ss_pred CCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CC--hHHHHHhhCCCCHHHHHHHHHHHHHh
Q 043950 66 GVVPRFVEFLMR-----EDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GA--VPIFVKLLASPSDDVREQAVWALGNV 136 (458)
Q Consensus 66 ~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~~~~~a~~~L~~l 136 (458)
..+..|++.+.. .+...-....+.++.|++. .++.|..+.+. +. +..|+.+..+.+..-|..++.++.|+
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 357777777755 1223456678889999999 69999999865 34 77888888888888888999999999
Q ss_pred hcCCCchhhHHhh--hCCHHHHHHHh
Q 043950 137 AADSPGCRNLVLR--EEALIPLLAQL 160 (458)
Q Consensus 137 ~~~~~~~~~~~~~--~~~l~~l~~~l 160 (458)
|.+.......+.. .+.++.++--+
T Consensus 131 cFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 131 CFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred hccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9877654333322 23445444444
No 251
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.44 E-value=1 Score=37.18 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=75.2
Q ss_pred CCCCccchhhHHHHHhHhhcCChhhHHHHHh----------------cCChHHHHHHhccCC-----hhhHHHHHHHHHH
Q 043950 245 GHPSPSVLTPALWTVGNIVMGDDFQTQCIIN----------------HGAVPCLLALLIHNH-----KKSIKKVACWTIS 303 (458)
Q Consensus 245 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----------------~~~~~~l~~ll~~~~-----~~~v~~~a~~~l~ 303 (458)
.+++......++..|+|+++..... ..+++ ...+..|+..+..+. ...--...+.+++
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 3455566777888999998744333 32221 235677777776621 2334457888999
Q ss_pred HhhcCCHHHHHHHHHc--CC--hHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950 304 NITAGNREQIQAVIDA--GL--IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361 (458)
Q Consensus 304 nl~~~~~~~~~~l~~~--~~--~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~ 361 (458)
|++.. ++.++.+.+. +. +..|+..+.+.+..-|.-++.++.|++... +....+..
T Consensus 84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~ 142 (192)
T PF04063_consen 84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLS 142 (192)
T ss_pred HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcC
Confidence 99864 5777777753 34 777888888887788889999999999843 34455444
No 252
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.41 E-value=0.49 Score=36.95 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=62.7
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc-CCChHHHHHHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS-HDNNGIREKAVKIL 442 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~~l 442 (458)
++..|..-+.+.++.++..|+.+|..+++.... .|...+...+.++.+..+.. ..++.|++++..++
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~------------~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT------------HFHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH------------HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 467788888889999999999999999986433 25777778888889988864 67889999999999
Q ss_pred HHhcCCCCCCCCC
Q 043950 443 ETYWCGRVVGPQL 455 (458)
Q Consensus 443 ~~~~~~~~~~~~~ 455 (458)
......-..+|.|
T Consensus 110 ~~W~~~f~~~~~l 122 (142)
T cd03569 110 QAWALAFRNKPQL 122 (142)
T ss_pred HHHHHHhCCCccc
Confidence 8875544444554
No 253
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.26 E-value=0.64 Score=38.48 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=91.7
Q ss_pred CCHHHHH-HHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC----CCHHHHHHHHHHHHHHcCCC-hhhHHHHHhC
Q 043950 35 DDNSLQL-EATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE----DYPQLQYEAAWALTNIASGT-SMNTNVVIDH 108 (458)
Q Consensus 35 ~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~i~~~a~~~L~~l~~~~-~~~~~~~~~~ 108 (458)
+...-+. .|+..|.-+++. ++....++++.+--.+...|... ..+-+|..++.+++.+...+ .+....+...
T Consensus 111 ~~~snRvcnaL~lLQclaSh--Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT 188 (315)
T COG5209 111 ERESNRVCNALNLLQCLASH--PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT 188 (315)
T ss_pred chhhhHHHHHHHHHHHHhcC--cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence 3444454 455555566665 56666666665533444444322 22467889999999998744 4455566678
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhh-------hCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLR-------EEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
.++|..++.+..+++--+..++.++..+..++...+-.... ...+..++..+-+..+..+.++++.+...+|.
T Consensus 189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 99999999999999988999999999888776543322111 11233344444344555666666666666665
Q ss_pred C
Q 043950 182 G 182 (458)
Q Consensus 182 ~ 182 (458)
+
T Consensus 269 ~ 269 (315)
T COG5209 269 K 269 (315)
T ss_pred C
Confidence 4
No 254
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.03 E-value=4 Score=40.26 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=92.0
Q ss_pred hhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhC-CCCccchhhHHHHHhHhhcCC
Q 043950 188 FDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLG-HPSPSVLTPALWTVGNIVMGD 266 (458)
Q Consensus 188 ~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~a~~~l~~l~~~~ 266 (458)
......++|.|..-+++.+..+++.++..+..+++.-+ -.++...+++.+..+.. +.+..++..++.|++.++..-
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l 460 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL 460 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence 34557888888888889999999999999999886544 22455667888877743 467788999999999887211
Q ss_pred hhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950 267 DFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE 333 (458)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 333 (458)
+...-...+..+.+..+.. ++.+......+..++....+.. ..++-..++|.++-+...+.
T Consensus 461 ----D~~~v~d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 ----DKAAVLDELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred ----HHHHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 1111113355555556666 7888877777777776522121 23344468888887776654
No 255
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=92.81 E-value=0.26 Score=44.15 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=70.3
Q ss_pred CChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhc-CCChHHHHHHHHH
Q 043950 363 GCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKS-HDNNGIREKAVKI 441 (458)
Q Consensus 363 ~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~v~~~a~~~ 441 (458)
++++.|..-+.+.++.|+..++.++..+.....+. |+..+....+...|..|.. +..+.|+++...+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~l 112 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDL 112 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHH
Confidence 35788889999999999999999999998765553 6777778888888999877 7789999999999
Q ss_pred HHHhcCCCCCCCCCCC
Q 043950 442 LETYWCGRVVGPQLGL 457 (458)
Q Consensus 442 l~~~~~~~~~~~~~~~ 457 (458)
+....+.-..||+|++
T Consensus 113 v~eWsee~K~Dp~lsL 128 (462)
T KOG2199|consen 113 VKEWSEEFKKDPSLSL 128 (462)
T ss_pred HHHHHHHhccCcchhH
Confidence 9888887788998875
No 256
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=92.75 E-value=3.3 Score=40.80 Aligned_cols=135 Identities=10% Similarity=0.077 Sum_probs=92.4
Q ss_pred HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHH
Q 043950 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQ 312 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~ 312 (458)
...+++.|...+++.+..++..++..+..++..-+ -..++..++|.+..+.....+..++..++.+++-++. .
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----R 459 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH----H
Confidence 34688899999999999999999999988876444 2344556788888876555478899999999998872 2
Q ss_pred HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC
Q 043950 313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD 376 (458)
Q Consensus 313 ~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 376 (458)
++...-...+..+.+..+..++.+....+.+..++..... .. ..++.+.+++.+..+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY-SG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cc-eeeehhhhhhhhhhhhhccc
Confidence 2222212245556666667788888888877777765422 11 34455677777777765543
No 257
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=92.56 E-value=0.79 Score=35.39 Aligned_cols=76 Identities=9% Similarity=-0.036 Sum_probs=64.5
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC---CCHHHHHHHHHHHHHHHHhchh
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC---VDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
++..|..-+.++++.++..|+..|-.++.++...+...+....++..|..++.. .++.|+.+++..+.........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 567788888899999999999999999999988888888887888889998875 4778999999999888765443
No 258
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.50 E-value=9.1 Score=35.69 Aligned_cols=307 Identities=14% Similarity=0.116 Sum_probs=155.2
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCCCcc-HHHHHHcCCHHHHHHhhc----C------CCCHHHHHHHHHHHHHHcCCChhh
Q 043950 33 WSDDNSLQLEATTQFRILLSIERSPR-IEDVIQAGVVPRFVEFLM----R------EDYPQLQYEAAWALTNIASGTSMN 101 (458)
Q Consensus 33 ~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~i~~L~~ll~----~------~~~~~i~~~a~~~L~~l~~~~~~~ 101 (458)
.+.+.+-+..|...|.+........+ ...+.+ -++.+++.++ + +.+.++..+|+++++.+.. +++.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence 34555666666666666655432222 222221 2344444332 1 2135888999999999987 4544
Q ss_pred HHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc---c-cccHHHHHHH
Q 043950 102 TNVVIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN---E-HAKLSMLRIA 172 (458)
Q Consensus 102 ~~~~~~~~---~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~---~-~~~~~~~~~a 172 (458)
...+-+.- ++...+..+.. .+..+....+|+|..=-.. ..+.....+..++..+. + -++..+....
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 44333221 34455555543 4556777777777653221 11233334444444442 2 4556677888
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChhhHHH---HHHh----C-----cH
Q 043950 173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG---TNDKIQV---VIEA----G-----VC 237 (458)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~---~~~~----~-----~i 237 (458)
+.++.++....|.........-+|.++..+-+....++..+......+... +...... ..+. + +.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 888888888765444444455677777777777777777766555444311 1111111 1111 2 33
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc---CCHHHHH
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA---GNREQIQ 314 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~---~~~~~~~ 314 (458)
+.+..++.+.+......-+|...-+.-+++....--.-...+...-..++++ ++.+|..|..+=..+.. .++....
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~ 313 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP 313 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence 4456666663333333333332222222221111111134566666677788 89999887655444442 2222222
Q ss_pred HHHHcCChHHHHHHhccC-Ch----hhHHHHHHHHHHhhc
Q 043950 315 AVIDAGLIVPLVNVLQDA-EF----DIKKEAALAIANATV 349 (458)
Q Consensus 315 ~l~~~~~~~~L~~ll~~~-~~----~~~~~a~~~L~~l~~ 349 (458)
..++- +..++...+..+ .. +++..++..++++..
T Consensus 314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 22221 233344444433 22 667777777777764
No 259
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.43 E-value=0.85 Score=35.21 Aligned_cols=74 Identities=11% Similarity=0.001 Sum_probs=62.5
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCC--HHHHHHHHHHHHHHHHhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVD--PKIVTVCLEGLENILKVG 394 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~~~~l~~l~~~~ 394 (458)
++..|..-+.++++.++..|+..|-.++.++...+...+.+.+++..|..++..+. +.|+.+++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 56678888889999999999999999999988888888889999999999887643 348889988888776644
No 260
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.36 E-value=4.9 Score=38.66 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=80.5
Q ss_pred hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950 18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~ 97 (458)
.....+.+..+++.+.+.|..++...+..|+.+..- -..+....-.|.+..|.+-+-+.. +.+|.+|+.+|+.+-..
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEM 162 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhc
Confidence 344557788899999999999999999999888443 445666677788888888777777 79999999999988653
Q ss_pred --ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCC
Q 043950 98 --TSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADS 140 (458)
Q Consensus 98 --~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~ 140 (458)
+++++ ....|...++. ++.++|+.|+ .|+..++
T Consensus 163 ~~neen~-------~~n~l~~~vqnDPS~EVRr~al---lni~vdn 198 (885)
T COG5218 163 ELNEENR-------IVNLLKDIVQNDPSDEVRRLAL---LNISVDN 198 (885)
T ss_pred cCChHHH-------HHHHHHHHHhcCcHHHHHHHHH---HHeeeCC
Confidence 23322 24566666765 7788998754 5555443
No 261
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.35 E-value=1.4 Score=38.61 Aligned_cols=146 Identities=19% Similarity=0.204 Sum_probs=102.2
Q ss_pred hhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHH
Q 043950 192 RPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 192 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 271 (458)
...+......|.+.|+......+..+..++....+....... .++..+++-+++....+-..|+.+++.+.......+.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677888999999999999999998665544443332 4677788888888888999999999999765444433
Q ss_pred HHHhcCChHHHHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhh
Q 043950 272 CIINHGAVPCLLALLIHNH---KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANAT 348 (458)
Q Consensus 272 ~~~~~~~~~~l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 348 (458)
. -++.++..|.... +.=++..|-.+|..+..+-... .+++.|+..+...++.++..++.++.+..
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 3 2333444332221 2347888888998888643222 25777888888888899888888777776
Q ss_pred cC
Q 043950 349 VR 350 (458)
Q Consensus 349 ~~ 350 (458)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 53
No 262
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.23 E-value=10 Score=35.65 Aligned_cols=191 Identities=11% Similarity=0.050 Sum_probs=115.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCC--CccHHHHHHcCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHcCCC
Q 043950 27 AMVAGVWSDDNSLQLEATTQFRILLSIER--SPRIEDVIQAGVVPRFVEFLMRED----YP--QLQYEAAWALTNIASGT 98 (458)
Q Consensus 27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~ll~~~~----~~--~i~~~a~~~L~~l~~~~ 98 (458)
.+..+++..+.+-++.|+-...++..+.+ ..+.+.+.++-+.+.+-+++.+.+ .+ -.+..++.+|..++..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 46666777778889999999999987653 223556888888888888886543 12 2355677788888873
Q ss_pred hhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHH
Q 043950 99 SMNT--NVVIDHGAVPIFVKLLAS-PSD------DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSML 169 (458)
Q Consensus 99 ~~~~--~~~~~~~~i~~L~~ll~~-~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 169 (458)
++.. ..++ +-||.|..++.. .++ .+.+-+..+|..++...+.. ..++..|+++.+.+...-.+...-.
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~~~~~Q~y~~~~~~~d~ 170 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGL-MTLIASGGLRVIAQMYELPDGSHDM 170 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchh-HHHHhcCchHHHHHHHhCCCCchhH
Confidence 4432 2222 458999998865 222 37778889999998876554 4566789999988666322211112
Q ss_pred HHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 170 RIATWTLSKLCKGK--PQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 170 ~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
.-++.++--....- -.........++..+..-+...+...+-..+..+..+.
T Consensus 171 alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 171 ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 22222222222221 11112222333445555555556666777777776443
No 263
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.20 E-value=0.69 Score=38.30 Aligned_cols=103 Identities=14% Similarity=0.034 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh
Q 043950 296 KVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-----AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD 370 (458)
Q Consensus 296 ~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ 370 (458)
..|...+..++++ |+....+++..+=-.+...+.. ..+.+|..++..++.++.++++...+++....+++...+
T Consensus 118 cnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 3455555555554 4555556665543334444432 245688999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhchhhcc
Q 043950 371 LLLCVDPKIVTVCLEGLENILKVGEAEKN 399 (458)
Q Consensus 371 ll~~~~~~v~~~~~~~l~~l~~~~~~~~~ 399 (458)
+++...+--+..++.++..++.++...+.
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqY 225 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQY 225 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHH
Confidence 99988877777888889988877766543
No 264
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.10 E-value=11 Score=37.70 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=93.0
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhc----CCCchhhHHhhhCCHHHHHHHhcc---cccHHHHHHHHHHHHH
Q 043950 110 AVPIFVKLLAS----PSDDVREQAVWALGNVAA----DSPGCRNLVLREEALIPLLAQLNE---HAKLSMLRIATWTLSK 178 (458)
Q Consensus 110 ~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~l~~ 178 (458)
.+..+..++.+ ..+.++..|+.+++++.. +.+.+... .....++.+...+.. ..+.+-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 35667777765 456788888888887763 22221111 112345566655532 2344445666777777
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhc---CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC--CCccchh
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIH---LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH--PSPSVLT 253 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~ 253 (458)
+-. ...++.+..++. .....++..|+++|..++...+... -+.+..+..+ .+.++|.
T Consensus 473 ~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 643 234445555554 2346789999999998875544333 3556666665 3567888
Q ss_pred hHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950 254 PALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV 297 (458)
Q Consensus 254 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~ 297 (458)
.|+..+... +|.. ..+..+...+..+++.+|+..
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHH
Confidence 887776333 2322 246667777776655666543
No 265
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=15 Score=36.94 Aligned_cols=321 Identities=12% Similarity=0.052 Sum_probs=170.1
Q ss_pred ccHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCC-CccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 043950 23 EILPAMVAGVWSD-DNSLQLEATTQFRILLSIER-SPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSM 100 (458)
Q Consensus 23 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~ 100 (458)
-....+.++++.. |..+++.+++.++-+..+-+ .+..-.-.-......+.++++.-..-+.+...+..|+.+.....+
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3466677888865 78899999999988765431 111111122345556666666543245677777777776653333
Q ss_pred hHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcC----CCchhhHHhhhCCHHHHHHHhcccccH---HHHHH
Q 043950 101 NTNVVIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAAD----SPGCRNLVLREEALIPLLAQLNEHAKL---SMLRI 171 (458)
Q Consensus 101 ~~~~~~~~~~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~l~~l~~~l~~~~~~---~~~~~ 171 (458)
...... ..+++.+-.+-+ ++.+-+|...+.+|.|+... ++.+. ..+-+++++-.+..+| .+.+.
T Consensus 606 ~I~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 606 HIAPYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred hhhHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhh
Confidence 222111 111222222222 24566777778888888632 12211 1344555554333332 24444
Q ss_pred HHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc-cCChhhHHHHHHhCcHHHHHHHhCCCCcc
Q 043950 172 ATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLS-YGTNDKIQVVIEAGVCRRLVELLGHPSPS 250 (458)
Q Consensus 172 a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 250 (458)
+...-.....+. ..-....-+++|.+...+.......+ .++.++.... -.++.... ....|++..+.+++.+-..+
T Consensus 679 gmeLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~e 755 (978)
T KOG1993|consen 679 GMELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNE 755 (978)
T ss_pred HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHH
Confidence 443333333332 22233446677777777764443332 2333332222 12222222 33457888899988876555
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh-ccCChhhHHHHHHHHHHHhhcCCHHHHHHHHH-cCChHHHHH-
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-IHNHKKSIKKVACWTISNITAGNREQIQAVID-AGLIVPLVN- 327 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~-~~~~~~L~~- 327 (458)
-....+.++..+...++ ........++++.+..-+ .....|.+-..-..+++.+...+++....+.+ ..-...++.
T Consensus 756 gl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~ 834 (978)
T KOG1993|consen 756 GLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAM 834 (978)
T ss_pred HHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHH
Confidence 66667777777766555 334444567777765544 23325666667777777777666666555543 222223331
Q ss_pred -------Hhc-cCChhhHHHHHHHHHHhhcCCCHH
Q 043950 328 -------VLQ-DAEFDIKKEAALAIANATVRGTHE 354 (458)
Q Consensus 328 -------ll~-~~~~~~~~~a~~~L~~l~~~~~~~ 354 (458)
+.. -.+++-|+--+-++..+...+.+.
T Consensus 835 li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ 869 (978)
T KOG1993|consen 835 LIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPD 869 (978)
T ss_pred HHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcH
Confidence 111 126666776777777777654443
No 266
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.80 E-value=6.5 Score=32.47 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=93.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNV 104 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~ 104 (458)
++.+++...+++..++..|+..+..+....=..+. ..+|.|+.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 67778888899999999999999988775422222 26899999999988 899999999999998866655544
Q ss_pred HHhCCChHHHHHhhC---CCCH-HH---HHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccc-------cHHHHH
Q 043950 105 VIDHGAVPIFVKLLA---SPSD-DV---REQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHA-------KLSMLR 170 (458)
Q Consensus 105 ~~~~~~i~~L~~ll~---~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------~~~~~~ 170 (458)
-...| +..-..+-. .+.. .. ....+..+..+.......|.. .+..+++.+.... .+.-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHH
Confidence 44434 333333222 1111 11 444556666666655444444 4556666664322 334455
Q ss_pred HHHHHHHHhhcC
Q 043950 171 IATWTLSKLCKG 182 (458)
Q Consensus 171 ~a~~~l~~l~~~ 182 (458)
...++..||+.-
T Consensus 157 ~~~Fla~nLA~l 168 (187)
T PF12830_consen 157 FLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHhcC
Confidence 566666666654
No 267
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.79 E-value=22 Score=38.56 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=74.8
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHH-
Q 043950 276 HGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHE- 354 (458)
Q Consensus 276 ~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~- 354 (458)
.+++|.|-.-|.+. +..+|..|...++.+......... =-...+....+.-+.+.+.++|.+++....++.......
T Consensus 258 ~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 37899999999998 999999999999999864322221 001224445555566667777777777777665542100
Q ss_pred ---------------------------------HHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 043950 355 ---------------------------------QIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 355 ---------------------------------~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~ 393 (458)
+.-.+... .+..+.+.+.+....|+..|+..+..+++.
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 00011111 344455556678889999999999988873
No 268
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=91.70 E-value=1.7 Score=31.28 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=56.9
Q ss_pred HCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHH
Q 043950 361 REGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVK 440 (458)
Q Consensus 361 ~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~ 440 (458)
+...+..|++-+..++......++..+..+.+.... ...+.+.|+.+-+.++...-++..+.....
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~ 93 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE 93 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence 455677888888888877888899999998876443 677889999999999998888998888888
Q ss_pred HHHH
Q 043950 441 ILET 444 (458)
Q Consensus 441 ~l~~ 444 (458)
+++.
T Consensus 94 il~~ 97 (98)
T PF14726_consen 94 ILDQ 97 (98)
T ss_pred HHhc
Confidence 8764
No 269
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.65 E-value=6.8 Score=32.37 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=56.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCch
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGC 143 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 143 (458)
.++.+++++.+++ ..++..|+.++..+....--+. ...+|.++.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4677888888888 7999999999988877321111 135899999999999999999999999998766554
No 270
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=27 Score=39.07 Aligned_cols=231 Identities=16% Similarity=0.078 Sum_probs=119.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAADSPGCRNL 146 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~ 146 (458)
...++..+..++ +..+-.+..+++.++..-++.. ++ .+..+..++-+.+ .++..|..-..+++.+-.+.......
T Consensus 878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~--f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP--FV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc--hH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 444455555666 6777777777777766321111 11 1224455555544 55556655556666665433222111
Q ss_pred HhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC---hHHHHHH----------
Q 043950 147 VLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD---EEVLSDA---------- 213 (458)
Q Consensus 147 ~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~---~~~~~~~---------- 213 (458)
-.....+..++.+..++.+|.++..++.++..+...............+..+..++.+.. .++....
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 112234667777776778889999999999988877644445555666666666665322 2222211
Q ss_pred ---HHHHHHhccCChh-hHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 043950 214 ---CWTLSYLSYGTND-KIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN 289 (458)
Q Consensus 214 ---~~~l~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 289 (458)
..+++.=...+.. ..........+-...-++.+++..+...+..++.++-...+..... .-++..+..++.+.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSSS 1110 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcch
Confidence 2222221111111 0111222223333444455667788888888888876555433221 12455566666555
Q ss_pred ChhhHHHHHHHHHHHhh
Q 043950 290 HKKSIKKVACWTISNIT 306 (458)
Q Consensus 290 ~~~~v~~~a~~~l~nl~ 306 (458)
..-.|.....++..+.
T Consensus 1111 -~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1111 -YLILRRASFSCLRQLV 1126 (2067)
T ss_pred -hhhhhhhHHhhhhHHh
Confidence 3334444444444443
No 271
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.58 E-value=3.6 Score=32.94 Aligned_cols=146 Identities=11% Similarity=0.056 Sum_probs=84.5
Q ss_pred hhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-CCCCccchhhHHHHHhHhhcCChh
Q 043950 191 VRPALPALAQLIHLD-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-GHPSPSVLTPALWTVGNIVMGDDF 268 (458)
Q Consensus 191 ~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a~~~l~~l~~~~~~ 268 (458)
...+++.+..+++++ ++.++..++++++.+-.-++...+.+.... + ..- ...+........... ......++
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~---~~~~~~~~~~~~~~~l~~~-~~~~~~ee 81 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--D---SKSSENSNDESTDISLPMM-GISPSSEE 81 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--C---ccccccccccchhhHHhhc-cCCCchHH
Confidence 356788888888866 589999999999999877775554222110 0 000 011111112112111 11111222
Q ss_pred hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHh
Q 043950 269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANA 347 (458)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l 347 (458)
..-..++..|+.+|+++.-..-...+..++.++... ......++-+ ++|.+++.+.+.+...++...+-|+.+
T Consensus 82 ----~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~--viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 ----YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ--VIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred ----HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH--HhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 222346778888888774344455677777777642 1122333333 899999999877778888777777766
Q ss_pred h
Q 043950 348 T 348 (458)
Q Consensus 348 ~ 348 (458)
+
T Consensus 156 v 156 (160)
T PF11865_consen 156 V 156 (160)
T ss_pred H
Confidence 5
No 272
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.43 E-value=1.6 Score=36.06 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=70.6
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC---------CCHHHHHHHHHHHHHHHHhc
Q 043950 324 PLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC---------VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 324 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---------~~~~v~~~~~~~l~~l~~~~ 394 (458)
.+++.+.+..... ..+..|.-.....+....+.|++.||+..|.+.+.. .+......++.++..++...
T Consensus 70 ~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~ 147 (187)
T PF06371_consen 70 WYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK 147 (187)
T ss_dssp HHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH
Confidence 3444454432221 334444444444566778888888999999888762 34467777888888887543
Q ss_pred hhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 395 EAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
.. ....+...+++..|...+.+++..++..+..+|..+
T Consensus 148 ~G-------------~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 148 YG-------------LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HH-------------HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 32 366777889999999999999999999999988653
No 273
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.40 E-value=2 Score=33.56 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=61.0
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC-CHH---HHHHHHHHHHHHHHhc
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV-DPK---IVTVCLEGLENILKVG 394 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~---v~~~~~~~l~~l~~~~ 394 (458)
++..|..-+.++++.++..|+..|-.++.++...+...+....++..|..++..+ ... |+.+++..+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 5667888888999999999999999999998888888888888899999988743 333 8889988888776655
No 274
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=91.26 E-value=31 Score=39.19 Aligned_cols=270 Identities=9% Similarity=0.051 Sum_probs=144.8
Q ss_pred CCHHHHHHHHHHHHHhhcCC---CchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHH
Q 043950 121 PSDDVREQAVWALGNVAADS---PGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPA 197 (458)
Q Consensus 121 ~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~ 197 (458)
++..++..|+..|..++..- ++....-.+...+.++...+.++.+.++++.++.++.++...........-..++..
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~V 1228 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMV 1228 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 46677788888887877422 111111223456778888887778889999999999988765422111122344444
Q ss_pred HHHhhcCCChHHHHHHHHHHHHhccCChhhH-----HHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCC---h-
Q 043950 198 LAQLIHLDDEEVLSDACWTLSYLSYGTNDKI-----QVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGD---D- 267 (458)
Q Consensus 198 l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-----~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~---~- 267 (458)
+.......++.+...+..++..+....-... ..+ ...+..+..+.+.. +..+-..|+..|++++..- +
T Consensus 1229 Ls~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1229 FTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 4444456678888888888877663211100 011 12344444444433 3445556666665442100 0
Q ss_pred -----------------------hhHHHHH-----hcCChHH---HHHHhccCChhhHHHHHHHHHHHhhcC-----CHH
Q 043950 268 -----------------------FQTQCII-----NHGAVPC---LLALLIHNHKKSIKKVACWTISNITAG-----NRE 311 (458)
Q Consensus 268 -----------------------~~~~~~~-----~~~~~~~---l~~ll~~~~~~~v~~~a~~~l~nl~~~-----~~~ 311 (458)
.....+. ....++. |.++..++ +.+||..|..+|-.+... +++
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs~~ 1385 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFSLP 1385 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 0000000 0122333 33445555 899999999999887741 334
Q ss_pred HHHHHHHcCChHHHHHHhccC-----------------------ChhhHHHHHHHHHHhhcCCCHHHHHHHH--HCCChH
Q 043950 312 QIQAVIDAGLIVPLVNVLQDA-----------------------EFDIKKEAALAIANATVRGTHEQIKYLV--REGCIK 366 (458)
Q Consensus 312 ~~~~l~~~~~~~~L~~ll~~~-----------------------~~~~~~~a~~~L~~l~~~~~~~~~~~l~--~~~~l~ 366 (458)
....++. +++-++++.+... +..+...+..+|.+++.--. .+...+- =.+++.
T Consensus 1386 ~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft-~fFd~L~~~L~~~l~ 1463 (1780)
T PLN03076 1386 LWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFV-KFYPTVNPLLKKVLM 1463 (1780)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444445 4555565555321 01123334444444432111 1112211 125566
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 367 PLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 367 ~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
.|..++..+++.+-..+..+|.+++....
T Consensus 1464 ll~~ci~q~n~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1464 LLVSFIKRPHQSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHhh
Confidence 66667778888888888899888876433
No 275
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=18 Score=36.55 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=98.9
Q ss_pred CCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChh-hHHHHHHhC-------cHHHHHHHhCCCCccchhhHH
Q 043950 185 QPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTND-KIQVVIEAG-------VCRRLVELLGHPSPSVLTPAL 256 (458)
Q Consensus 185 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~-------~i~~L~~ll~~~~~~~~~~a~ 256 (458)
..........+|.++.++..+..-+-.+|+.++-.+...... ....+-... .+..|++.++.+...--+...
T Consensus 490 ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Eneylm 569 (960)
T KOG1992|consen 490 QLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLM 569 (960)
T ss_pred cCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHH
Confidence 445566678899999999999998999999888776633222 111111111 222333333444333333444
Q ss_pred HHHhHhhcCChhhHHHHHh---cCChHHHHHHhccCChhhHHHHHHHHHHHhh---c-CCHHHHHHHHHcCChHHHHHHh
Q 043950 257 WTVGNIVMGDDFQTQCIIN---HGAVPCLLALLIHNHKKSIKKVACWTISNIT---A-GNREQIQAVIDAGLIVPLVNVL 329 (458)
Q Consensus 257 ~~l~~l~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~---~-~~~~~~~~l~~~~~~~~L~~ll 329 (458)
.++.++..-.++....... .++.+.+...-+++.++..-.....+++-+. + .++... ..++...+|.+...+
T Consensus 570 KaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~v-s~~e~aL~p~fq~Il 648 (960)
T KOG1992|consen 570 KAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAV-SSLEEALFPVFQTIL 648 (960)
T ss_pred HHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHH
Confidence 5555544433333221111 1233334444455545544443333333332 2 333332 334445788888888
Q ss_pred ccCChhhHHHHHHHHHHhhcCCCH---HH----HH-----HHH-HCCChHHHHhhcc
Q 043950 330 QDAEFDIKKEAALAIANATVRGTH---EQ----IK-----YLV-REGCIKPLCDLLL 373 (458)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~~~---~~----~~-----~l~-~~~~l~~L~~ll~ 373 (458)
..+-.+..-.+...++-+++.+.. +. .. .+. ..|-++.++++++
T Consensus 649 ~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~ 705 (960)
T KOG1992|consen 649 SEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ 705 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence 877667777777777776654322 11 11 122 3578888888876
No 276
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=91.20 E-value=1 Score=34.72 Aligned_cols=74 Identities=9% Similarity=0.008 Sum_probs=60.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHcC
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQ-LQYEAAWALTNIAS 96 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~-i~~~a~~~L~~l~~ 96 (458)
.++..+.+.|+++++.+++.|+..|-.++...+.....++...+++..|.+++....... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 357778888889999999999999999888765556677778889999999998766434 88888888877765
No 277
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.96 E-value=1.2 Score=34.53 Aligned_cols=74 Identities=8% Similarity=0.001 Sum_probs=60.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHcC
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMR-----EDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~i~~~a~~~L~~l~~ 96 (458)
.++..+.+.|++.++.+++.|+..|-.+...-+...-.++...+++..|++++.. ...+.++..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4577888889999999999999999998877656667788888999999999963 1237899999988887765
No 278
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.94 E-value=1.7 Score=33.56 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=59.7
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHcC
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE--DYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~i~~~a~~~L~~l~~ 96 (458)
+++..|.+.|+++++.++..|+..|-.+....+.....++....++..|++++... ..+.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 35777888889999999999999999988876454566666668888899999763 337899999999988776
No 279
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.84 E-value=6.8 Score=39.74 Aligned_cols=342 Identities=14% Similarity=0.077 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH------hC
Q 043950 35 DDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI------DH 108 (458)
Q Consensus 35 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~------~~ 108 (458)
+|..+...+...++.++.+ ......+++.|++..|+..=.- .+...-...||..+.. .......+. -.
T Consensus 365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~ 438 (1516)
T KOG1832|consen 365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH 438 (1516)
T ss_pred ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence 4555667788888888776 4566677788888777665222 2233334445555555 222222221 12
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc-------c-----------ccHHHHH
Q 043950 109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE-------H-----------AKLSMLR 170 (458)
Q Consensus 109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~-------~-----------~~~~~~~ 170 (458)
.++..-+.++......-+.++...++.-.... ..-+.+-....+..|+.++.. + .+...-.
T Consensus 439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fr-ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~ 517 (1516)
T KOG1832|consen 439 QVVKLAIELLDCSQDQARKNSALFFAAAFVFR-AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF 517 (1516)
T ss_pred HHHHHHHHHHhcchhhccchHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence 34555566665543333333322222111000 011222233455566555531 1 1223344
Q ss_pred HHHHHHHHhhcCC-----CC-CChhhhhhhHHHHHHhhcCCC------hHHHHHHHHHHHHhccCCh-------hhHHHH
Q 043950 171 IATWTLSKLCKGK-----PQ-PPFDQVRPALPALAQLIHLDD------EEVLSDACWTLSYLSYGTN-------DKIQVV 231 (458)
Q Consensus 171 ~a~~~l~~l~~~~-----~~-~~~~~~~~~l~~l~~ll~~~~------~~~~~~~~~~l~~l~~~~~-------~~~~~~ 231 (458)
..|.++....+.. .. .......+..+..++-+...+ .+..+.+++-+-.+....+ ...+-+
T Consensus 518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf 597 (1516)
T KOG1832|consen 518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF 597 (1516)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence 4555555443321 00 000111122222222222111 2223334443333332222 123345
Q ss_pred HHhCcHHHHHHHhCCC-C-------ccchhhHHHHHhHhhcCChhhHHHHHh--------cCChHHHHHHhccC---Chh
Q 043950 232 IEAGVCRRLVELLGHP-S-------PSVLTPALWTVGNIVMGDDFQTQCIIN--------HGAVPCLLALLIHN---HKK 292 (458)
Q Consensus 232 ~~~~~i~~L~~ll~~~-~-------~~~~~~a~~~l~~l~~~~~~~~~~~~~--------~~~~~~l~~ll~~~---~~~ 292 (458)
...+++..++.+...+ + .+....|+.+|.-+..-.+ ....+.. ..++..++..-... .++
T Consensus 598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~-iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp 676 (1516)
T KOG1832|consen 598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPD-IQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP 676 (1516)
T ss_pred HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecch-HHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence 6667777777776542 2 2344556666655554333 3233321 12343333333221 278
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc-cCChhhHH--HHH-HHHHHhhcCCCHHHHHHHHHCCChHHH
Q 043950 293 SIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ-DAEFDIKK--EAA-LAIANATVRGTHEQIKYLVREGCIKPL 368 (458)
Q Consensus 293 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~~~~--~a~-~~L~~l~~~~~~~~~~~l~~~~~l~~L 368 (458)
+++..|..+|.|+....|+.+...+ .+..+ +++..... ..- ..|.+... .....+..++++..|
T Consensus 677 ei~~~AL~vIincVc~pp~~r~s~i--------~~v~S~~g~~r~~l~~~~ks~~le~~l~----~mw~~Vr~ndGIkiL 744 (1516)
T KOG1832|consen 677 EIIQPALNVIINCVCPPPTTRPSTI--------VAVGSQSGDRRIFLGAGTKSAKLEQVLR----QMWEAVRGNDGIKIL 744 (1516)
T ss_pred HHHHHHHhhhheeecCCCCcchhhh--------hhccccCCCccccccCCCchHHHHHHHH----HHHHHHhcCccHHHH
Confidence 9999999999999986655433222 22221 11211110 000 01122111 223445567899999
Q ss_pred HhhccCCC-----HHHHHHHHHHHHHHHHhchh
Q 043950 369 CDLLLCVD-----PKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 369 ~~ll~~~~-----~~v~~~~~~~l~~l~~~~~~ 396 (458)
+.+++-.+ ..++..|+++|.-+.+..+-
T Consensus 745 l~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tV 777 (1516)
T KOG1832|consen 745 LKLLQYKNPPTTADCIRALACRVLLGLARDDTV 777 (1516)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHhccccCcHH
Confidence 99998543 35888899999888876553
No 280
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.68 E-value=23 Score=36.68 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=73.2
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ 330 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 330 (458)
++..+.-+++++|-.++...+ ..+|.+++-|+......+|.+...+++.+|.+... +. ...+|.+-.-|.
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa----m~-d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA----MT-DRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH----HH-HHhhHHHHHHhc
Confidence 333444455555543333222 24566666665553455666666666666643211 12 236888888899
Q ss_pred cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCC--hHHHHhhccCCCHHHHHHHHHHHHHHHHhc
Q 043950 331 DAEFDIKKEAALAIANATVRGTHEQIKYLVREGC--IKPLCDLLLCVDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~--l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~ 394 (458)
++++-+|..++..|.++...+ ++.-+|. +..+..++ +.+++++.-+-..+..++...
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999998642 2222332 23333333 455667777766777666543
No 281
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=90.00 E-value=3.6 Score=32.07 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=59.9
Q ss_pred ChHHHHHHhc-cCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHH-HHhhccC---CCHHHHHHHHHHHHHHHHhc
Q 043950 321 LIVPLVNVLQ-DAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKP-LCDLLLC---VDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 321 ~~~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~~~~l~~l~~~~ 394 (458)
++..+..-+. +.++.++..|+..|-.++.++...+...+...+++.. |..++.. .+..|+.+++.++.......
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 4556666666 4588899999999999999999899889999999997 8998863 34588999999888887544
No 282
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.86 E-value=17 Score=33.84 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=88.6
Q ss_pred HHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhc----c-CChhhHHHHHHHHHHH
Q 043950 231 VIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLI----H-NHKKSIKKVACWTISN 304 (458)
Q Consensus 231 ~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~----~-~~~~~v~~~a~~~l~n 304 (458)
+.+.+-.+.+-+-+... ...-|..|+..+..++...+.....++ ...+..++. + ..+++-+..|...++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 55566667776666643 345677888889888875544433332 223333333 1 2266788899999999
Q ss_pred hhcCCHH------------HHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 043950 305 ITAGNRE------------QIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL 372 (458)
Q Consensus 305 l~~~~~~------------~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll 372 (458)
++..... ++..+....++|.|. --.+..+-++..|++.+..+-..-+++.... +++.++..|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 9863211 345555666777666 2224467789999999988876655444333 688999999
Q ss_pred cCCCHHHHHHHHHH
Q 043950 373 LCVDPKIVTVCLEG 386 (458)
Q Consensus 373 ~~~~~~v~~~~~~~ 386 (458)
.+++.-|...|..+
T Consensus 356 ~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 356 QSSSYVVHTYAAIA 369 (370)
T ss_dssp TSS-HHHHHHHHHH
T ss_pred CCCCcchhhhhhhh
Confidence 98888776665544
No 283
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=89.47 E-value=9.8 Score=30.66 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=71.2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhhc---C
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDH--GAVPIFVKLLAS-PSDDVREQAVWALGNVAA---D 139 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~---~ 139 (458)
..+..+..++++.+ +.-|-.++..+...+..++ .+.+.+. ..+..++..+++ .++.+.+.++.++..+.. +
T Consensus 25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667788888888 7888888888888877432 3334333 357888888887 456788888888888873 3
Q ss_pred CCchhhHHhhhCCHHHHHHHhccc-ccHHHHHHHHHHHHHhhcCCCCC
Q 043950 140 SPGCRNLVLREEALIPLLAQLNEH-AKLSMLRIATWTLSKLCKGKPQP 186 (458)
Q Consensus 140 ~~~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~~a~~~l~~l~~~~~~~ 186 (458)
.++....+.. ..++.++..+..- .+......++.++..+....|..
T Consensus 102 ~p~l~Rei~t-p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 102 KPTLTREIAT-PNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred CCchHHHHhh-ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence 3443222222 2233333333211 11455666777777776654433
No 284
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.91 E-value=6.9 Score=38.15 Aligned_cols=218 Identities=11% Similarity=-0.016 Sum_probs=118.7
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc-----------CCChHHHHHHHHHHHHhccCChhhHHHHH
Q 043950 164 AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH-----------LDDEEVLSDACWTLSYLSYGTNDKIQVVI 232 (458)
Q Consensus 164 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~-----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 232 (458)
++.++...+-..|..+... .....++..|..+.. ..++.++..++..|+.-.... -.
T Consensus 249 ~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~~ 316 (501)
T PF13001_consen 249 SNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------TS 316 (501)
T ss_pred CcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------hC
Confidence 3445666666666665543 112455555555554 235677777777776532100 01
Q ss_pred HhCcHHHHHHHhCCC--CccchhhHHHHH---hHhhcCChhhHHHHHhcCChHHHHHHhc-------cCChhhHHHHHHH
Q 043950 233 EAGVCRRLVELLGHP--SPSVLTPALWTV---GNIVMGDDFQTQCIINHGAVPCLLALLI-------HNHKKSIKKVACW 300 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~--~~~~~~~a~~~l---~~l~~~~~~~~~~~~~~~~~~~l~~ll~-------~~~~~~v~~~a~~ 300 (458)
-..++..+..-+.++ +..++..++..+ ...........-..+...+...+...+. ...+...|..+..
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe 396 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE 396 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence 123344444555555 567777887777 5555444333222222233333333442 1126689999999
Q ss_pred HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHH-HHHHHCCChHHHHh-hccCCCHH
Q 043950 301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQI-KYLVREGCIKPLCD-LLLCVDPK 378 (458)
Q Consensus 301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~~~l~~L~~-ll~~~~~~ 378 (458)
+|+.++...+.... -+-+++..|++.|.+++++++..+-.||..++.......- ........+..+.. ........
T Consensus 397 ~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 474 (501)
T PF13001_consen 397 TLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRS 474 (501)
T ss_pred HHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHH
Confidence 99999986554321 1245788899999888999999998888888653211000 00000111222222 22234455
Q ss_pred HHHHHHHHHHHHHHhch
Q 043950 379 IVTVCLEGLENILKVGE 395 (458)
Q Consensus 379 v~~~~~~~l~~l~~~~~ 395 (458)
++..+++....++....
T Consensus 475 ~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 475 CRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHHHhCCccc
Confidence 77777777776665433
No 285
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.47 E-value=11 Score=33.23 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=94.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhCC----CCHHHHHHHHHHHHHhhcCCC
Q 043950 68 VPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHG--AVPIFVKLLAS----PSDDVREQAVWALGNVAADSP 141 (458)
Q Consensus 68 i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~ 141 (458)
...+.+.+..=. ++-+.-++..++-++. .+.....+...+ +...+..++.. ..+..+-.++++++|+....+
T Consensus 65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP 142 (268)
T ss_dssp HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence 344455554432 2446667777776666 455555544332 24444444432 567888889999999987655
Q ss_pred chhhHHhh-hC-CHHHHHHHhcccc---cHHHHHHHHHHHHHhhcCC--CCCChhhhhhhHHHHHHhhc--CCChHHHHH
Q 043950 142 GCRNLVLR-EE-ALIPLLAQLNEHA---KLSMLRIATWTLSKLCKGK--PQPPFDQVRPALPALAQLIH--LDDEEVLSD 212 (458)
Q Consensus 142 ~~~~~~~~-~~-~l~~l~~~l~~~~---~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~ 212 (458)
. +..+.. .+ .+...+..+..+. +..++..++..+.|++... ..........++..+.+.+. ..|++....
T Consensus 143 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 143 G-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp C-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred c-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 4 444443 22 3334443332332 6778888888888887543 11123333456677777433 368999999
Q ss_pred HHHHHHHhccCChhhHH
Q 043950 213 ACWTLSYLSYGTNDKIQ 229 (458)
Q Consensus 213 ~~~~l~~l~~~~~~~~~ 229 (458)
++.+++++...++...+
T Consensus 222 ~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhccChhHHH
Confidence 99999999966654444
No 286
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.30 E-value=9.2 Score=28.83 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=58.7
Q ss_pred HHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHC-CChHHHHhhccCC----
Q 043950 301 TISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVRE-GCIKPLCDLLLCV---- 375 (458)
Q Consensus 301 ~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~---- 375 (458)
=|++++..++..... ++..|.+-|+..++.|+..++.+|.+++..++..+...+.+. ..+..+...-..+
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 344444444444333 556788888888999999999999999999988887776553 2333333332212
Q ss_pred ----CHHHHHHHHHHHHHHHHh
Q 043950 376 ----DPKIVTVCLEGLENILKV 393 (458)
Q Consensus 376 ----~~~v~~~~~~~l~~l~~~ 393 (458)
...|+..|-+++..++..
T Consensus 99 Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred CcchhHHHHHHHHHHHHHHhcc
Confidence 345888888888877653
No 287
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=88.13 E-value=21 Score=36.28 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=108.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
.|..|+.+|.+.+..+...+-..+......++ +. -++..|+...-+.+. ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~-~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDR-EP-------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccc-hH-------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 46788999999999988888888887766542 22 136777777655552 355566664432 3212
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 104 VVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
.++..|-..+.. +..|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.-..
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 224556666653 4567779999999998888777778888999999999988899989899988888877655
Q ss_pred CCCChhhhhhhHHHHHHhh
Q 043950 184 PQPPFDQVRPALPALAQLI 202 (458)
Q Consensus 184 ~~~~~~~~~~~l~~l~~ll 202 (458)
+.........++.....++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4444444445555555555
No 288
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=87.26 E-value=13 Score=34.28 Aligned_cols=156 Identities=13% Similarity=0.029 Sum_probs=94.8
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------CCChHHHHHHHHHHHHhcc
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH----------LDDEEVLSDACWTLSYLSY 222 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~~~~~~~~~l~~l~~ 222 (458)
-..++..+.+..-+..+..++.++.-|+++............++.+..+-. ..|..+...++.||+|+.-
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 345566664444345566677778888877644444444555555555443 2356889999999999998
Q ss_pred CChhhHHHHHHhCcHHHHHHHhCCC-----CccchhhHHHHHhHhhcCChhh-HHHHHhcCChHHHHHHhccCC------
Q 043950 223 GTNDKIQVVIEAGVCRRLVELLGHP-----SPSVLTPALWTVGNIVMGDDFQ-TQCIINHGAVPCLLALLIHNH------ 290 (458)
Q Consensus 223 ~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~l~~ll~~~~------ 290 (458)
+++.......+......+.+.+... ...+...-++.|.-+..-.... .+.+.+.++++.+-+++.++-
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 8887777677776666666555331 1122333344444444333343 344557889999998886421
Q ss_pred --------hhhHHHHHHHHHHHhhcC
Q 043950 291 --------KKSIKKVACWTISNITAG 308 (458)
Q Consensus 291 --------~~~v~~~a~~~l~nl~~~ 308 (458)
+....-++..++.|+..+
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeec
Confidence 223445777888888763
No 289
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=87.02 E-value=13 Score=29.03 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=58.8
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhh-cCCChH---HHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLK-SHDNNG---IREKAV 439 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~---v~~~a~ 439 (458)
++..|..-+.+.++.++..|+.++..+++.... .|...+....+++.|..+. .+.... |++++.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~------------~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l 110 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP------------RFHREVASKEFLDELVKLIKSKKTDPETPVKEKIL 110 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH------------HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH------------HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHH
Confidence 467788888899999999999999999987543 3677777778889999874 344444 899999
Q ss_pred HHHHHhcCCCCCCCC
Q 043950 440 KILETYWCGRVVGPQ 454 (458)
Q Consensus 440 ~~l~~~~~~~~~~~~ 454 (458)
.++...-..-..+|.
T Consensus 111 ~ll~~W~~~f~~~~~ 125 (140)
T PF00790_consen 111 ELLQEWAEAFKSDPE 125 (140)
T ss_dssp HHHHHHHHHTTTSTT
T ss_pred HHHHHHHHHHCCCCC
Confidence 888776443344443
No 290
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.98 E-value=38 Score=34.47 Aligned_cols=327 Identities=14% Similarity=0.111 Sum_probs=172.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCC----hhhHHHHHhC
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRED-YPQLQYEAAWALTNIASGT----SMNTNVVIDH 108 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~i~~~a~~~L~~l~~~~----~~~~~~~~~~ 108 (458)
++||.++..|=++|...... .|..-.+++++..++ ++.+|..|+-.+.|....+ ++....+.+.
T Consensus 16 ~pdps~rk~aEr~L~~~e~q-----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~ 84 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEGQ-----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEE 84 (960)
T ss_pred CCCCccCchHHHHHHHhccC-----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchh
Confidence 56788998888888887433 245556777776654 5788999999998887721 1111222221
Q ss_pred --C-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-C
Q 043950 109 --G-AVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-P 184 (458)
Q Consensus 109 --~-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~ 184 (458)
. +-..++.++-+....++.+-..+++-++..+-.-+. - ..++.++..+ ++.|-.+......+-..+...- +
T Consensus 85 ~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kW--p--tLl~dL~~~l-s~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 85 DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKW--P--TLLPDLVARL-SSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhh--H--HHHHHHHhhc-cccchHHHHHHHHHHHHHHHhcCc
Confidence 1 224556666667788999999999999855422111 1 1466677776 4444433333333333333222 1
Q ss_pred CCChh----hhhh-----------hHHHHHHhhc--CCChHHHHHHHH-------HHHHhccC-ChhhHHHHHHhCcHHH
Q 043950 185 QPPFD----QVRP-----------ALPALAQLIH--LDDEEVLSDACW-------TLSYLSYG-TNDKIQVVIEAGVCRR 239 (458)
Q Consensus 185 ~~~~~----~~~~-----------~l~~l~~ll~--~~~~~~~~~~~~-------~l~~l~~~-~~~~~~~~~~~~~i~~ 239 (458)
..... .... ++.....+.+ .+|......... ....+... -++..+.-.+ .++..
T Consensus 160 efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~-~wM~~ 238 (960)
T KOG1992|consen 160 EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMK-TWMGA 238 (960)
T ss_pred ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHH-HHHHH
Confidence 11111 1122 2222223332 233332222222 33333311 1122211111 35677
Q ss_pred HHHHhCCCCc-------------cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh-----hHHHHHHHH
Q 043950 240 LVELLGHPSP-------------SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK-----SIKKVACWT 301 (458)
Q Consensus 240 L~~ll~~~~~-------------~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-----~v~~~a~~~ 301 (458)
+.+++..+++ .++...|..+.-.+...++..+.++. .++.....+|.+. .+ .....|...
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~-~fv~~~W~LL~~~-s~~~kyD~Lvs~Al~F 316 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLP-DFVTATWNLLVST-SPDTKYDYLVSKALQF 316 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHH-HHHHHHHHHHHhc-CCCccHHHHHHHHHHH
Confidence 7777764332 34555666666666666666665442 4555566666554 22 233445556
Q ss_pred HHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHH-
Q 043950 302 ISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIV- 380 (458)
Q Consensus 302 l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~- 380 (458)
|.+.+.. +.+...+...+++..+++... +.|+.... .-..+.+.+.++.+-+-++..|.+.|
T Consensus 317 Lt~V~~r-~~y~~~F~~~~vl~~i~e~Vv-------------lpN~~lR~---eDeElFED~pleYiRRDlEGsDvdTRR 379 (960)
T KOG1992|consen 317 LTSVSRR-PHYAELFEGENVLAQICEKVV-------------LPNLILRE---EDEELFEDNPLEYIRRDLEGSDVDTRR 379 (960)
T ss_pred HHHHHhh-hhhHhhhcchHHHHHHHHhhc-------------ccccccch---hhHHHhccCHHHHHHHhcccCCcchhH
Confidence 6666542 222222333444444444332 34444322 12345677788888888988777664
Q ss_pred HHHHHHHHHHHHhchh
Q 043950 381 TVCLEGLENILKVGEA 396 (458)
Q Consensus 381 ~~~~~~l~~l~~~~~~ 396 (458)
..|++.+..+++..+.
T Consensus 380 R~a~dlvrgL~~~fe~ 395 (960)
T KOG1992|consen 380 RAAIDLVRGLCKNFEG 395 (960)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4588888888887654
No 291
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.80 E-value=52 Score=35.91 Aligned_cols=126 Identities=10% Similarity=0.077 Sum_probs=78.6
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhc
Q 043950 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEK 398 (458)
Q Consensus 319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~ 398 (458)
.+++|.|-.-|.+++..+|..|...++.+......... =.....+...+.-+.+...+|+..+++....++...+...
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~--~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS--ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc--ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 36899999999999999999999999999874321111 0112345555666666777788888887777776655433
Q ss_pred ccCC----------------------CCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcC
Q 043950 399 NTGS----------------------TIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWC 447 (458)
Q Consensus 399 ~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 447 (458)
+.-+ +..+...+...+... .+..+...+.+....|+..|-.-+..+|.
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2200 022233333333333 45555555666777788777776666655
No 292
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=86.77 E-value=36 Score=34.03 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=92.5
Q ss_pred hhhHHHHHHhhcCC----ChHHHHHHHHHHHHhcc----CChhhHHHHHHhCcHHHHHHHhC----CCCccchhhHHHHH
Q 043950 192 RPALPALAQLIHLD----DEEVLSDACWTLSYLSY----GTNDKIQVVIEAGVCRRLVELLG----HPSPSVLTPALWTV 259 (458)
Q Consensus 192 ~~~l~~l~~ll~~~----~~~~~~~~~~~l~~l~~----~~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~~~a~~~l 259 (458)
...+..+..++.++ .+.++..++-+++.+.. ..+.... .+-..+++.+...+. ..+...+...+.+|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 45566666666643 45666677777766652 1111101 111234555555543 34555677889999
Q ss_pred hHhhcCChhhHHHHHhcCChHHHHHHhc--cCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc--CChh
Q 043950 260 GNIVMGDDFQTQCIINHGAVPCLLALLI--HNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD--AEFD 335 (458)
Q Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~ 335 (458)
||+.. + ..++.+...+. .+.+..+|..|+|++..++...+.. +-+.++.++.+ .+.+
T Consensus 471 GN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E 531 (574)
T smart00638 471 GNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE 531 (574)
T ss_pred hccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence 99864 2 22344444444 1225689999999999998644443 44556666654 4788
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHH
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCL 384 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~ 384 (458)
+|..|..+|...- .+... +..+...+. .++.+|...+.
T Consensus 532 vRiaA~~~lm~t~--P~~~~---------l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 532 VRMAAVLVLMETK--PSVAL---------LQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHHHHHHhcC--CCHHH---------HHHHHHHHhhcCcHHHHHHhH
Confidence 9988877776652 22222 344555554 44566655443
No 293
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=86.61 E-value=13 Score=28.92 Aligned_cols=80 Identities=20% Similarity=0.206 Sum_probs=57.2
Q ss_pred ChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH-HHhhhcC---CChHHHHHH
Q 043950 364 CIKPLCDLLL-CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK-IEGLKSH---DNNGIREKA 438 (458)
Q Consensus 364 ~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~---~~~~v~~~a 438 (458)
++..|..-+. ++++.+...++.+|..+++..... |...+..-++++. |..+... .+.+|+.+.
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~ki 106 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKV 106 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHH
Confidence 3555666555 568889999999999999875543 5677777778886 7777642 346899999
Q ss_pred HHHHHHhcCCCCCCCCC
Q 043950 439 VKILETYWCGRVVGPQL 455 (458)
Q Consensus 439 ~~~l~~~~~~~~~~~~~ 455 (458)
..+++.....-..+|.|
T Consensus 107 l~li~~W~~~f~~~~~l 123 (141)
T cd03565 107 LALIQAWADAFRGSPDL 123 (141)
T ss_pred HHHHHHHHHHhCCCccc
Confidence 99998875544445544
No 294
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=86.60 E-value=7.3 Score=44.79 Aligned_cols=269 Identities=14% Similarity=0.144 Sum_probs=140.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCCC--ccHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950 31 GVWSDDNSLQLEATTQFRILLSIERS--PRIEDVI--QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI 106 (458)
Q Consensus 31 ~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~--~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 106 (458)
.+..++.+++..+...++.+...... +...... -..++..+..+-....++.++......+. ........
T Consensus 489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhc
Confidence 34467788888887666666543210 0000001 12233333333333333555554443333 22222344
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCC
Q 043950 107 DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQP 186 (458)
Q Consensus 107 ~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~ 186 (458)
..+.+..+...+....-.+++.+...+++++..+|...-.......+ ....-+..+.-..+...+..-+..+....+..
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l-~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLL-ELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHH-HHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 44556667777777888889999999999988766321111110001 11111111111111111111111111111111
Q ss_pred ChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhHhhcC
Q 043950 187 PFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGNIVMG 265 (458)
Q Consensus 187 ~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~l~~~ 265 (458)
....+...+..+...+...++.+...+..+++.++..........++ ..++.+.+.+.+ .+..-+..+.++++++.+.
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 22223445566677777788888888899999988655433333344 455666666655 3455677889999999875
Q ss_pred ChhhHHHHH-hcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 266 DDFQTQCII-NHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 266 ~~~~~~~~~-~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
..-...... ..-++..+...+.......++.++...++++..
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~ 763 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGA 763 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcc
Confidence 433222222 223566666666666566778888888886654
No 295
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.20 E-value=13 Score=33.06 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=74.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhCCChHH----HHHhhC--------CCCHHHHHHHHHHH
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT-NVVIDHGAVPI----FVKLLA--------SPSDDVREQAVWAL 133 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~----L~~ll~--------~~~~~~~~~a~~~L 133 (458)
++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+. +...+. ..+..+-..+.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999998 8999999999999998444333 23555665443 333333 24456777777777
Q ss_pred HHhhcC---C-CchhhHHhhhCCHHHHHHHhccccc---HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043950 134 GNVAAD---S-PGCRNLVLREEALIPLLAQLNEHAK---LSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLD 205 (458)
Q Consensus 134 ~~l~~~---~-~~~~~~~~~~~~l~~l~~~l~~~~~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 205 (458)
..++.. . ...+......-.-..++..+....+ +.+....+..+..+...-........+.+++.+.+.+.+.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 777532 1 1111111111111223333322222 5555555555555444322222233355555555555443
No 296
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.16 E-value=22 Score=31.65 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=75.8
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHH-HHHHHcCChHHHHHHhc------------cCChhhHHHHHHH
Q 043950 277 GAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQI-QAVIDAGLIVPLVNVLQ------------DAEFDIKKEAALA 343 (458)
Q Consensus 277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~-~~l~~~~~~~~L~~ll~------------~~~~~~~~~a~~~ 343 (458)
-++|.++.++++. ++.+|..++.++..+....+... ..+.+.|..+.+.+.+. .+...+...+.-+
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4789999999998 99999999999999997433322 33556776665555442 3356677888888
Q ss_pred HHHhhcC-------CCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 344 IANATVR-------GTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 344 L~~l~~~-------~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
+..++.. ........++.+|++..+....+.+.+.++...++.+..++....
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lG 256 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELG 256 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhc
Confidence 8887442 112223334444444444433333457777777777777766533
No 297
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.48 E-value=3.2 Score=36.69 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHc-C-CHHHHHHhhcCC----CCHHHHHHHHHHHHHHcCCChhhH-HHHH
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQA-G-VVPRFVEFLMRE----DYPQLQYEAAWALTNIASGTSMNT-NVVI 106 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~-~i~~L~~ll~~~----~~~~i~~~a~~~L~~l~~~~~~~~-~~~~ 106 (458)
+..+..++.+++.++|+... ......+... + .+...+..+... + ..++..++..+.|++......+ ..-.
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-kn~~~A~ATl~~Nlsv~~~~~~~~~~~ 197 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSH--PPGRQLLLSHFDSSILELLSSLLSSLLDSN-KNVRIALATLLLNLSVLLHKNRSDEEW 197 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTS--CCCHHHHHCTHHTCHHHHCHCCCTTS-HHH-HHHHHHHHHHHHHHHHHHHHCTS-CCH
T ss_pred CCcHHHHHHHHHHHHHhhCC--CccHHHHHhcccchHHHHHHHHhhcccccc-HHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 35688999999999999775 3444444432 2 333333333333 4 7899999999999976211111 0001
Q ss_pred hCCChHHHHHh-hCC-CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHH
Q 043950 107 DHGAVPIFVKL-LAS-PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLR 170 (458)
Q Consensus 107 ~~~~i~~L~~l-l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 170 (458)
....+..+... ... .+++...-++.+++++....+.........|+-..+-..-....++.++.
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~ 263 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE 263 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence 11235666663 333 68888889999999999666554444333333333333332334444444
No 298
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=84.07 E-value=2.5 Score=35.69 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHH-------cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-HhC
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQ-------AGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV-IDH 108 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~-~~~ 108 (458)
-+-|..|+.+|+++.-.+ .+.+.+.. +.++..|++++....++-.|+-|+-.|.+++..++.....+ .+.
T Consensus 138 lSPqrlaLEaLcKLsV~e--~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIE--NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCHHHHHHHHHHHhheec--cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 456888999999997653 33222222 23566777888777768899999999999999776655444 466
Q ss_pred CChHHHHHhhCCC
Q 043950 109 GAVPIFVKLLASP 121 (458)
Q Consensus 109 ~~i~~L~~ll~~~ 121 (458)
+.|..|+.++...
T Consensus 216 ~~i~~Li~FiE~a 228 (257)
T PF12031_consen 216 PCISHLIAFIEDA 228 (257)
T ss_pred chHHHHHHHHHHH
Confidence 8899999999754
No 299
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.89 E-value=52 Score=33.30 Aligned_cols=197 Identities=13% Similarity=0.069 Sum_probs=100.3
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-CchhhHHhhhCCHHHHHHHhcc---cccHHHHHHHHHHHHHhh----c
Q 043950 110 AVPIFVKLLASPSDDVREQAVWALGNVAADS-PGCRNLVLREEALIPLLAQLNE---HAKLSMLRIATWTLSKLC----K 181 (458)
Q Consensus 110 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~l~~~l~~---~~~~~~~~~a~~~l~~l~----~ 181 (458)
.+..+.+++.+....-.+ +...|..+.... ....+ .+..+..++.. ..++.+...++-+++.+. .
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 466677777663322222 334444444322 11112 34445555532 234556666665555543 3
Q ss_pred CC------CCCChhhhhhhHHHHHHhh----cCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC---C
Q 043950 182 GK------PQPPFDQVRPALPALAQLI----HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP---S 248 (458)
Q Consensus 182 ~~------~~~~~~~~~~~l~~l~~ll----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~ 248 (458)
.. ..........+++.+...+ ...|.+.+..++.+|+|+-. ...++.+...+... .
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccc
Confidence 31 0112222244444444444 45677888899999999852 13567777777765 5
Q ss_pred ccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHH
Q 043950 249 PSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVN 327 (458)
Q Consensus 249 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ 327 (458)
..+|..|++++..++...+... .+.++.++.+. .+.++|..|..+|...- .+.. .+..+..
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~~-P~~~---------~l~~i~~ 599 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRCN-PSPS---------VLQRIAQ 599 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhcC-CCHH---------HHHHHHH
Confidence 6788999999998876665443 44456666543 35688888877766531 1211 3445566
Q ss_pred HhccC-ChhhHHHHHH
Q 043950 328 VLQDA-EFDIKKEAAL 342 (458)
Q Consensus 328 ll~~~-~~~~~~~a~~ 342 (458)
.+..+ +..|......
T Consensus 600 ~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 600 SLWNEPSNQVASFVYS 615 (618)
T ss_dssp HHTT-S-HHHHHHHHH
T ss_pred HHhhCchHHHHHHHHH
Confidence 66543 4555544433
No 300
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=83.88 E-value=32 Score=30.82 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhhcCCHHHH-----------------HH----HHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhc
Q 043950 293 SIKKVACWTISNITAGNREQI-----------------QA----VIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATV 349 (458)
Q Consensus 293 ~v~~~a~~~l~nl~~~~~~~~-----------------~~----l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~ 349 (458)
.+|.+-...+.+++.+..... .. --+.|.+..+++.+..+ +...+-..+.|+-.+..
T Consensus 47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR 126 (303)
T PF12463_consen 47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR 126 (303)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence 467777777887776321111 00 01357788888888654 66778889999999999
Q ss_pred CCCH-HHHHHHHHCCChHHHHhhccCC---CHHHHHHHHHHHHHHHHhchhh
Q 043950 350 RGTH-EQIKYLVREGCIKPLCDLLLCV---DPKIVTVCLEGLENILKVGEAE 397 (458)
Q Consensus 350 ~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~~~~l~~l~~~~~~~ 397 (458)
+.+. ....++.+.|+++.+++.+-++ +..+.....++|+.+++.....
T Consensus 127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~ 178 (303)
T PF12463_consen 127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDA 178 (303)
T ss_pred CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHH
Confidence 8877 4556788999999999976543 3468899999999999977654
No 301
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=83.58 E-value=18 Score=33.22 Aligned_cols=219 Identities=18% Similarity=0.121 Sum_probs=109.4
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCc
Q 043950 63 IQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPG 142 (458)
Q Consensus 63 ~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~ 142 (458)
+...++..|..++..+.++......+.++..-.... ..-+...++..+..-+.+..+.+|+.-+..++......+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 334567777888876554666666666666554321 0111123467777777777777898888888887651111
Q ss_pred hhhHHhhhCCHHHHHHHhc---ccccHHHH---HHHHHHHHHhhcCC-CCCCh-hhhhh-----hHHH-H--HHhhcC-C
Q 043950 143 CRNLVLREEALIPLLAQLN---EHAKLSML---RIATWTLSKLCKGK-PQPPF-DQVRP-----ALPA-L--AQLIHL-D 205 (458)
Q Consensus 143 ~~~~~~~~~~l~~l~~~l~---~~~~~~~~---~~a~~~l~~l~~~~-~~~~~-~~~~~-----~l~~-l--~~ll~~-~ 205 (458)
....-.-...++.+++.+. .++-+... ..+..++..+.... ..... ..... -=|. + -++... .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 1011111235666666663 12211111 11111211111111 00000 00000 0000 0 012222 3
Q ss_pred ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCC--CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHH
Q 043950 206 DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHP--SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLL 283 (458)
Q Consensus 206 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~ 283 (458)
+++.....++++..+..........-.....-..++.++-++ .+.+|+.|+..+..+...++.. +...++..+.
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~ 250 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW 250 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence 455566666666666644332221111233556777888777 7899999999999998877764 2233556666
Q ss_pred HHhccC
Q 043950 284 ALLIHN 289 (458)
Q Consensus 284 ~ll~~~ 289 (458)
+.+...
T Consensus 251 ~~l~~~ 256 (339)
T PF12074_consen 251 KWLSSS 256 (339)
T ss_pred HHHHhc
Confidence 666543
No 302
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=83.40 E-value=11 Score=36.33 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=73.0
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHhhcCC-
Q 043950 276 HGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQD-AEFDIKKEAALAIANATVRG- 351 (458)
Q Consensus 276 ~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~- 351 (458)
.++++.+++.+..+ .+..-....++ .=. .....++.+.+.++++.|++.|.. .+.+++.+|+..|+.++..+
T Consensus 20 ~~~v~~llkHI~~~---~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHIDTP---AIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcCCc---HHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 46666666666544 22222222222 101 223445556678999999999974 47789999999988886532
Q ss_pred -----------CHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHHhch
Q 043950 352 -----------THEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 352 -----------~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
.......+.+...+..|++.+- .........++.++..+++...
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknn 151 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNN 151 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 1344566677777888877554 2335566677788888876553
No 303
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=82.69 E-value=12 Score=29.38 Aligned_cols=124 Identities=12% Similarity=0.090 Sum_probs=85.7
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcC--CCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAAD--SPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATW 174 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~ 174 (458)
+++.-+.+.+.+.+..+.++++. ....++.+.+.+++-+..+ ++..-..+...+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45577788888999999999987 6677888888877766643 22233445667778888777656678889999999
Q ss_pred HHHHhhcCCCCCChhh-------hhhhHHHHHHhhcCCChHHHHHHHHHHHHhc
Q 043950 175 TLSKLCKGKPQPPFDQ-------VRPALPALAQLIHLDDEEVLSDACWTLSYLS 221 (458)
Q Consensus 175 ~l~~l~~~~~~~~~~~-------~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~ 221 (458)
.|..++..-+...... .-++...-+++..++|+-++..+-..+.++.
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni~ 148 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNIY 148 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhhc
Confidence 9998886542221111 1334445567778889888888777766653
No 304
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=54 Score=32.55 Aligned_cols=290 Identities=14% Similarity=0.171 Sum_probs=142.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTN 103 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~ 103 (458)
++..+=+.+-+++..+...|+-.+.-..++..++.- -++..|...+++++ ..++..|+..|+-.-.+ ..++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~d------palALLsdyv~~~~-s~~ri~aIlGLglayaG--sq~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNECD------PALALLSDYLQSSS-SIHRIGAILGLGLAYAG--SQRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeeccccccccC------HHHHHHHHhccCCC-ceeehHHhhhhHHhhcC--CchH
Confidence 466666777777777777776555544333222111 13445566667777 57888888888765443 2233
Q ss_pred HHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhc
Q 043950 104 VVIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCK 181 (458)
Q Consensus 104 ~~~~~~~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~ 181 (458)
.+. ..|..++.+. ..++...|...|+.+..++.+ ..+ ....++.++..-.........+...-.|..+..
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 322 2555666553 356777777777777654422 111 112344444433211122233333333333333
Q ss_pred CCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC---ccchhhHHHH
Q 043950 182 GKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS---PSVLTPALWT 258 (458)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~---~~~~~~a~~~ 258 (458)
... ..+.....-++.-...++..+-..+..++.......-.+ +. ..+..+-.... +.-+..|+.-
T Consensus 559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~I-q~---q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKI-QS---QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEe-ch---hhhhhhcCCCccchhhhccchhhh
Confidence 321 111112222221122222222112222211111110000 00 11111111111 1122234444
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHH
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKK 338 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~ 338 (458)
++-++.+.+-..+. .+..+-.++..+ ++.+|+..-.+++-++..+|.. .++..|-+.....|.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 44455444333222 355566777777 8888888888888887766542 4677788888888888888
Q ss_pred HHHHHHHHhhcCCCHHH
Q 043950 339 EAALAIANATVRGTHEQ 355 (458)
Q Consensus 339 ~a~~~L~~l~~~~~~~~ 355 (458)
+++.+++-+-.+.+...
T Consensus 694 naIfamGLiGAGTnNAR 710 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNNAR 710 (878)
T ss_pred HHHHHhccccCCcchHH
Confidence 88888887766544433
No 305
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.38 E-value=7.1 Score=29.14 Aligned_cols=70 Identities=7% Similarity=-0.000 Sum_probs=54.9
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh-----c-cCCCHHHHHHHHHHHHHH
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL-----L-LCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l-----l-~~~~~~v~~~~~~~l~~l 390 (458)
++..|..-+.+.++.++..|+..|-.++.+++..+...+.+..++..++.. . ...+..|+.++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 566677778888999999999999999999998988888887777666543 1 134678888888877654
No 306
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.33 E-value=72 Score=33.79 Aligned_cols=288 Identities=15% Similarity=0.113 Sum_probs=155.5
Q ss_pred hhccHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--
Q 043950 21 KLEILPAMVA-GVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG-- 97 (458)
Q Consensus 21 ~~~~i~~l~~-~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-- 97 (458)
+.+++..|-. .|++++.+.+...+..+.++-+.. .++-+..-+.--+|.|+.-+..-. ..+|...+.+|.--...
T Consensus 464 dLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvn 541 (2799)
T KOG1788|consen 464 DLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVN 541 (2799)
T ss_pred chHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhc
Confidence 3344444332 256788888988888888886654 566665556667888877776554 46666665555322110
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhccc-----ccHHHHHH
Q 043950 98 TSMNTNVVIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEH-----AKLSMLRI 171 (458)
Q Consensus 98 ~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~-----~~~~~~~~ 171 (458)
.-..++ +-.|+-+|+.+ +..++...+.....+...+..+++.+.+.|.++.+...+.++ +|..
T Consensus 542 cvPeqE-------LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy---- 610 (2799)
T KOG1788|consen 542 CVPEQE-------LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY---- 610 (2799)
T ss_pred cCcHHH-------HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh----
Confidence 001111 33566677653 345566666666677676777888888999888887777532 2211
Q ss_pred HHHHHHHhhcCCC-CCChhhh---hhhHHHHHHhhcCCC--hHH------HHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950 172 ATWTLSKLCKGKP-QPPFDQV---RPALPALAQLIHLDD--EEV------LSDACWTLSYLSYGTNDKIQVVIEAGVCRR 239 (458)
Q Consensus 172 a~~~l~~l~~~~~-~~~~~~~---~~~l~~l~~ll~~~~--~~~------~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~ 239 (458)
.........++ +..+... ...+-.--.++.+.. ..+ ......++..+..++.++...+.+..++..
T Consensus 611 --sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvkl 688 (2799)
T KOG1788|consen 611 --SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKL 688 (2799)
T ss_pred --hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceE
Confidence 01111111111 1111100 111111111222211 111 112234666666777777777888888888
Q ss_pred HHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-------Ch----hhHHHHHHHHHHHhhcC
Q 043950 240 LVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-------HK----KSIKKVACWTISNITAG 308 (458)
Q Consensus 240 L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-------~~----~~v~~~a~~~l~nl~~~ 308 (458)
++.++- +++-|...++.+..+....+.+.. ..-+-.+++.|+++ ++ ...+.....++..+...
T Consensus 689 ilpfli--ndehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgv 762 (2799)
T KOG1788|consen 689 ILPFLI--NDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGV 762 (2799)
T ss_pred EEEeee--chHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHcc
Confidence 888774 445677788888888766655322 11233344444442 01 23344455666666654
Q ss_pred CHHHHHHHHHcCChHHHHHHh
Q 043950 309 NREQIQAVIDAGLIVPLVNVL 329 (458)
Q Consensus 309 ~~~~~~~l~~~~~~~~L~~ll 329 (458)
+......+-+.+.+..|...|
T Consensus 763 ngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 763 NGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred CchheeehhccccHHHHHHHH
Confidence 434444555777777777665
No 307
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.79 E-value=26 Score=28.64 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=50.9
Q ss_pred CHHHHHHHhcccccHHHHHHHHHHHHHhhcC-CCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCCh
Q 043950 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKG-KPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTN 225 (458)
Q Consensus 152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~ 225 (458)
.++.++.-+ ...+...+..|...+..+... ...........+++.+...|.+.|+++...++.+|..++...+
T Consensus 39 ~Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 39 YLPIFFDGL-RETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHhhh-hccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 355566666 344444555666666666655 3444555567788888889999999999999999999965444
No 308
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.43 E-value=3.5 Score=34.91 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCCC-------hHHHHHhhCC-CCHHHHHHHHHHHHHhhcCCCc-hhhHHhhhCC
Q 043950 82 QLQYEAAWALTNIASGTSMNTNVVIDHGA-------VPIFVKLLAS-PSDDVREQAVWALGNVAADSPG-CRNLVLREEA 152 (458)
Q Consensus 82 ~i~~~a~~~L~~l~~~~~~~~~~~~~~~~-------i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~ 152 (458)
.=|..|+.+|++++- .+.+.+.+...+- +..|.+++.. .++..|+.|+..|.+++..++. ++....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 358889999999988 4566666655543 3455555554 7789999999999999977755 4466677888
Q ss_pred HHHHHHHhc
Q 043950 153 LIPLLAQLN 161 (458)
Q Consensus 153 l~~l~~~l~ 161 (458)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999984
No 309
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=81.36 E-value=47 Score=31.03 Aligned_cols=220 Identities=12% Similarity=0.106 Sum_probs=124.4
Q ss_pred cHHHHHHHHHHHHHhhcCC---CCCChhhhhhhHHHHHHhhcCC--ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHH
Q 043950 165 KLSMLRIATWTLSKLCKGK---PQPPFDQVRPALPALAQLIHLD--DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRR 239 (458)
Q Consensus 165 ~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~ 239 (458)
+..+..+|+.+++.+..+. ..........++...+..+.++ +..+....++++..--- +.. +.....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f-~~~----~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKF-SPK----IMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-CCc----ccchhhHHH
Confidence 5678888999999888765 2222333344566666666433 45677777777765321 111 223333444
Q ss_pred HHHHhCC-----CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHH
Q 043950 240 LVELLGH-----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQ 312 (458)
Q Consensus 240 L~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~ 312 (458)
++..+.. ++..+....+.++.++....+.....-. ...++.++..+-+. ...+|..|......+.. +....
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence 4443322 4566778889999999876665433222 23777887777777 66777766555555442 22111
Q ss_pred H-H---HHHH----cC-----ChHHHHHHhccCChhhHHHHHHHHHHhhcCCC-HHHHHHHHHCCChHHHHhhccCCCHH
Q 043950 313 I-Q---AVID----AG-----LIVPLVNVLQDAEFDIKKEAALAIANATVRGT-HEQIKYLVREGCIKPLCDLLLCVDPK 378 (458)
Q Consensus 313 ~-~---~l~~----~~-----~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~ 378 (458)
. . ...+ .+ +.+.+..++.+.+......-+|...-+..+.. .+.-.. -+..+.....++.++++.
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~--~n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEH--LNEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHh--HhHHHHHHHHHhcCCCHH
Confidence 1 1 1222 12 23335556666344443344555544444332 111111 123466666688899999
Q ss_pred HHHHHHHHHHHHHHh
Q 043950 379 IVTVCLEGLENILKV 393 (458)
Q Consensus 379 v~~~~~~~l~~l~~~ 393 (458)
++..|..+-..+...
T Consensus 290 ~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 290 VKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888763
No 310
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=80.86 E-value=12 Score=34.23 Aligned_cols=72 Identities=8% Similarity=0.044 Sum_probs=62.9
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHH
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~ 392 (458)
.+..+.+-+...|+.|...|+..+..++.++...++..+...++...|..++. ...+.|.++.-.++....+
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 57788888999999999999999999999999899999999999999999998 6778888887777776665
No 311
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=80.65 E-value=25 Score=37.55 Aligned_cols=235 Identities=15% Similarity=0.156 Sum_probs=128.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHh--------hcCCCCHHHHHHHHHHHHHH
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEF--------LMREDYPQLQYEAAWALTNI 94 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l--------l~~~~~~~i~~~a~~~L~~l 94 (458)
+-++.|+..+-++..++|..++.+++.++............+.-++..+.-+ ..++-..-+++.++++|+.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 4467788888899999999999999999876533333333332222222211 12111236888999999888
Q ss_pred cCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHh--hhCCHHHHHHHhcccccHHHHHHH
Q 043950 95 ASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVL--REEALIPLLAQLNEHAKLSMLRIA 172 (458)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~l~~l~~~l~~~~~~~~~~~a 172 (458)
..+..+..- ...+..+.+++..+.-+++...+..+..... ..++.+. -..+++..+..+ .+.+.+++..+
T Consensus 157 l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 774222111 1236777777776655555544444332211 0111111 012344555555 56667788888
Q ss_pred HHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCCh--HHHHHHHHHHHHhccCChhhHH----HHHHhCcHHHHHHHhCC
Q 043950 173 TWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDE--EVLSDACWTLSYLSYGTNDKIQ----VVIEAGVCRRLVELLGH 246 (458)
Q Consensus 173 ~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~--~~~~~~~~~l~~l~~~~~~~~~----~~~~~~~i~~L~~ll~~ 246 (458)
..++.......+......+..++..+...+..-+. .-.......+..++.... ... .-.+.|+++.+..++.+
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~e-vl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENE-VLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHH-HHHHHHHhhhhhccchhhHHHHHH
Confidence 88877766654333344445555555544432221 111112222223332221 111 11224788888888888
Q ss_pred CCccchhhHHHHHhHhhcCC
Q 043950 247 PSPSVLTPALWTVGNIVMGD 266 (458)
Q Consensus 247 ~~~~~~~~a~~~l~~l~~~~ 266 (458)
.=..++..++..+..+....
T Consensus 308 ~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 308 TISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77778888888888887644
No 312
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=80.22 E-value=71 Score=32.38 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=70.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhH
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNL 146 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 146 (458)
+|+.|..+..++- ++++..++..+..+....|+.-.. ++..++.-+..++..+...|...|.+|...+|..+-.
T Consensus 305 fievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceee
Confidence 4555555555665 799999999999998877765543 3677888888888889999999999999999887655
Q ss_pred HhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHHhh
Q 043950 147 VLREEALIPLLAQLN-EHAKLSMLRIATWTLSKLC 180 (458)
Q Consensus 147 ~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~l~ 180 (458)
+ +..+-.++. .+.+.....+++-+|..+.
T Consensus 379 v-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 379 V-----IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred h-----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 4 334444442 2233334444555555443
No 313
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=78.99 E-value=85 Score=32.55 Aligned_cols=109 Identities=12% Similarity=0.092 Sum_probs=69.7
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCC---ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhc
Q 043950 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREG---CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEK 398 (458)
Q Consensus 322 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~ 398 (458)
-..+...+..++...-...+.++.++..-.. +...+ -++.-..-....-..+.....++|.++....+
T Consensus 443 W~~l~~~~~~~~~~la~~lL~~~~~l~~l~~------~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~--- 513 (727)
T PF12726_consen 443 WKALLKSLDSDNPDLAKALLKSLSPLIGLEK------FPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDP--- 513 (727)
T ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccccc------cCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH---
Confidence 3345555666777777888888887764321 11111 11111111111122344455566666665533
Q ss_pred ccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCC
Q 043950 399 NTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCG 448 (458)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 448 (458)
......+.+.+....+..+.-|+++++++.|..++...|..
T Consensus 514 ---------~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~ 554 (727)
T PF12726_consen 514 ---------SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV 554 (727)
T ss_pred ---------HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC
Confidence 34688888899999999999999999999999999999863
No 314
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.68 E-value=69 Score=31.37 Aligned_cols=162 Identities=14% Similarity=0.004 Sum_probs=94.1
Q ss_pred ChHHHHHHhccC-ChhhHHHHHHHHH---HHhhcC-CHHHHH---HHHHcCChHHHHH----HhccCChhhHHHHHHHHH
Q 043950 278 AVPCLLALLIHN-HKKSIKKVACWTI---SNITAG-NREQIQ---AVIDAGLIVPLVN----VLQDAEFDIKKEAALAIA 345 (458)
Q Consensus 278 ~~~~l~~ll~~~-~~~~v~~~a~~~l---~nl~~~-~~~~~~---~l~~~~~~~~L~~----ll~~~~~~~~~~a~~~L~ 345 (458)
++..+..-+.++ ...++|..+...+ .+...+ .+..+. ..+..++.|.+-. -....+...|..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 344444444333 1346777776666 555543 333332 2334555555410 112347889999999999
Q ss_pred HhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHh
Q 043950 346 NATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEG 425 (458)
Q Consensus 346 ~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 425 (458)
.++........ -+-+++..|++-++.+.++++...-++|..+.......... ...-........+..
T Consensus 400 ~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~----------~~~~~~~~~~~l~~~ 466 (501)
T PF13001_consen 400 LLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD----------EDEQKRLLLELLLLS 466 (501)
T ss_pred HHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc----------hhHHHHHHHHHHHHh
Confidence 99986543221 23456888888888889999999888888887655443200 000000000112222
Q ss_pred hhcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950 426 LKSHDNNGIREKAVKILETYWCGRVVG 452 (458)
Q Consensus 426 l~~~~~~~v~~~a~~~l~~~~~~~~~~ 452 (458)
...+....++..|.+-.+++|+.++.+
T Consensus 467 ~~~~~~~~~R~~avk~an~~fpf~d~~ 493 (501)
T PF13001_consen 467 YIQSEVRSCRYAAVKYANACFPFSDVP 493 (501)
T ss_pred hccchhHHHHHHHHHHHHHhCCccchH
Confidence 234455667888999999999988754
No 315
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=78.59 E-value=78 Score=37.17 Aligned_cols=251 Identities=14% Similarity=0.081 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCC----CChh--hhhhhHHHHH
Q 043950 126 REQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQ----PPFD--QVRPALPALA 199 (458)
Q Consensus 126 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~--~~~~~l~~l~ 199 (458)
...+.++++++-...-.. ...+...+.......+++++..+..+++.+...... .... .....+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 444667777664332111 112334333333667788888886666655544322 1111 1233333333
Q ss_pred Hhh-cCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCC
Q 043950 200 QLI-HLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGA 278 (458)
Q Consensus 200 ~ll-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~ 278 (458)
.+- ...++.++......+. ........+.+.+..+...+....-.++..+...+++++..++......+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 222 3566777766666554 122233555566677777788888889999999999999988855544444444
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHH
Q 043950 279 VPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKY 358 (458)
Q Consensus 279 ~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 358 (458)
+...-++..+. -..++...+.-+..+....+..+...++ ..+..++..+...+..+...+..+++.|+..+..+. ..
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~-~~ 685 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM-VK 685 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh-hh
Confidence 44444444444 3333333333333333333333333332 345667777777788888889999999987654222 11
Q ss_pred HHHCCChHHHHhhcc-CCCHHHHHHHHHHHHHHHH
Q 043950 359 LVREGCIKPLCDLLL-CVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 359 l~~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~~ 392 (458)
..+ ..+..+.+.+. ..+..-+..+++.+.++..
T Consensus 686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 122 33444444443 3334445567777776654
No 316
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.38 E-value=36 Score=27.86 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=54.5
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcC
Q 043950 277 GAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 277 ~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~ 350 (458)
..++.+.+-|... +...+-.|...+..+... ..+.+-.++. .++.++...|.+.++++...++.+|..++..
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 4677888888777 555677777777777654 4455555444 3788899999999999999999999999654
No 317
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=76.99 E-value=49 Score=28.72 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 043950 38 SLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKL 117 (458)
Q Consensus 38 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 117 (458)
....+|+..|..+ . +....+.++++++.++. . --..++......-...-..+..|-++.|..+
T Consensus 57 ~~~~~a~~LLaq~-r-----------e~~A~~~li~l~~~~~~-~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~l 119 (249)
T PF06685_consen 57 NLHFYALYLLAQF-R-----------EERALPPLIRLFSQDDD-F----LEDLFGDFITEDLPRILASVGDGDIEPLKEL 119 (249)
T ss_pred HHHHHHHHHHHHH-h-----------hhhhHHHHHHHHcCCcc-h----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHH
Confidence 3456666666665 2 22468999999977662 1 1111222221111111112233668888888
Q ss_pred hCCCC--HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHH
Q 043950 118 LASPS--DDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQ 159 (458)
Q Consensus 118 l~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~ 159 (458)
+.+++ .-+|..|+.+|..++...+..|+.+.+ .+..++..
T Consensus 120 i~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 120 IEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 88754 678999999999999988888887654 45555554
No 318
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=76.28 E-value=76 Score=30.54 Aligned_cols=236 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred hCCHHHHHHHhcccccHHHHHHHHHHHHHh-----------hcCCCCCChhhhhhhHHHHHHhhcCCC--------hHHH
Q 043950 150 EEALIPLLAQLNEHAKLSMLRIATWTLSKL-----------CKGKPQPPFDQVRPALPALAQLIHLDD--------EEVL 210 (458)
Q Consensus 150 ~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l-----------~~~~~~~~~~~~~~~l~~l~~ll~~~~--------~~~~ 210 (458)
..++..+.+.+..++...++.++.|.|.+| ++-+++-...-...++...+.++-... +...
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC
Q 043950 211 SDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH 290 (458)
Q Consensus 211 ~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~ 290 (458)
..++.-+... +.......+--+-++..|+++ +-.++++..++.....=+. +.+....++..=+.|+++.-++..
T Consensus 176 kvvl~~ia~v--geS~qyPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaq-SSqsAa~fLg~WlsPpli~sLs~~- 249 (589)
T PF11229_consen 176 KVVLKPIATV--GESYQYPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQ-SSQSAAMFLGSWLSPPLIHSLSVN- 249 (589)
T ss_pred HHHHHHhhhc--CCCCCCCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhcc-ccccHHHHHHhhcCcchhhhhhHH-
Q ss_pred hhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHH
Q 043950 291 KKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLC 369 (458)
Q Consensus 291 ~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~ 369 (458)
.|+.-+..+.-+.. ..+++++.+++.-++..+-..-.-.++++...++..|..-....++.+.-.-.=....+.++
T Consensus 250 ---tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF 326 (589)
T PF11229_consen 250 ---TKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIF 326 (589)
T ss_pred ---HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Q ss_pred hhc----cCCCHHHHHHHHHHHHHHHHhc
Q 043950 370 DLL----LCVDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 370 ~ll----~~~~~~v~~~~~~~l~~l~~~~ 394 (458)
+++ +..+-++.....++|..+.+.+
T Consensus 327 ~lLPn~i~~~eveLYi~vAkCLSEMtd~e 355 (589)
T PF11229_consen 327 DLLPNKIQRNEVELYIGVAKCLSEMTDTE 355 (589)
T ss_pred HhCcccccHHHHHHHHHHHHHHhhcCHHH
No 319
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.05 E-value=54 Score=28.78 Aligned_cols=176 Identities=18% Similarity=0.121 Sum_probs=102.4
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHH
Q 043950 66 GVVPRFVEFLMREDYPQLQYEAAWALTNIASG-------TSMNTNVVIDHGAVPIFVKLLASPS----DDVREQAVWALG 134 (458)
Q Consensus 66 ~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~-------~~~~~~~~~~~~~i~~L~~ll~~~~----~~~~~~a~~~L~ 134 (458)
|+.+.+++-+.++. ..+.++..|..++.. +.+.|-.+.-.+.+|.++.-+.+++ ......++..|+
T Consensus 64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 34444455555544 355666777766652 1222322222345677777777665 133445667888
Q ss_pred HhhcCCCchhhHHhhhCCHHHHHHHhccc---ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHH
Q 043950 135 NVAADSPGCRNLVLREEALIPLLAQLNEH---AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLS 211 (458)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~ 211 (458)
.+|.... ...+..++..+... +..+....++..++.-.. | ......+..+..++.++-+.++.
T Consensus 141 ~~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 141 QVAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHH
Confidence 8874321 12344455444332 233455555555544321 1 12356677788899888899999
Q ss_pred HHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhh
Q 043950 212 DACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIV 263 (458)
Q Consensus 212 ~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~ 263 (458)
..+.+|..+....+-... ...+++..+.+++.++. -..|+.++-...
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 999999998865443322 44568899999997654 456666665554
No 320
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.95 E-value=55 Score=28.76 Aligned_cols=180 Identities=19% Similarity=0.161 Sum_probs=98.2
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-------CchhhHHhhhCCHHHHHHHhcccc---cHHHHHHHHHHHHH
Q 043950 109 GAVPIFVKLLASPSDDVREQAVWALGNVAADS-------PGCRNLVLREEALIPLLAQLNEHA---KLSMLRIATWTLSK 178 (458)
Q Consensus 109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~l~~~l~~~~---~~~~~~~a~~~l~~ 178 (458)
|+-+.+.+-+.++ ...+.++..|..++... ++.|-.+.-...+|.++..+.+.. .......++..+..
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3334444455443 34466777777776422 111222222335666777763333 01344566678888
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHH
Q 043950 179 LCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 179 l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
+|...... ....++.....---.+..+....++..++.-. -++ .+...+..++.+|.++...++..++.+
T Consensus 142 ~a~~~~~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~i 211 (262)
T PF14225_consen 142 VAEAQGLP---NLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPD-----HEFQILTFLLGLLENGPPWLRRKTLQI 211 (262)
T ss_pred HHHhCCCc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cch-----hHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 88543211 11122221111111223444555555554321 111 123467789999999888999999999
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT 306 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~ 306 (458)
|..+....+-... ...+++.++.++++++ .-.+|..++-+..
T Consensus 212 L~~ll~~~d~~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v 253 (262)
T PF14225_consen 212 LKVLLPHVDMRSP--HGADLISPLLRLLQTD----LWMEALEVLDEIV 253 (262)
T ss_pred HHHHhccccCCCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHH
Confidence 9998765443322 5567899999999877 3345666665554
No 321
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.57 E-value=19 Score=34.44 Aligned_cols=76 Identities=9% Similarity=-0.028 Sum_probs=63.7
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCC--CHHHHHHHHHHHHHHHHhchh
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCV--DPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~~~~l~~l~~~~~~ 396 (458)
++..|.+-+.+.++.++..|+..|-.++.++...+...+.+++++..++.+.+.. +..|+.+++.+|...-.....
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 5667777788888899999999999999999988888999999999999988754 668999999888877654443
No 322
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=75.51 E-value=27 Score=32.12 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=68.7
Q ss_pred hhhHHHHHHhhcC------C-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC----------CCccchhh
Q 043950 192 RPALPALAQLIHL------D-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH----------PSPSVLTP 254 (458)
Q Consensus 192 ~~~l~~l~~ll~~------~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----------~~~~~~~~ 254 (458)
..++|.++.++.. . +.......+..+..+..+..-..+..+. .+++.++.++-. +.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 5566666666642 2 5777888888888888776655554443 378888877732 34578999
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChh-hHHHHHHHHHHHh
Q 043950 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKK-SIKKVACWTISNI 305 (458)
Q Consensus 255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~v~~~a~~~l~nl 305 (458)
|+..++.++......... +...+...+.+.+.++..+ ....-|...|..+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999998643322111 2234455566666544233 3355566665554
No 323
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.34 E-value=69 Score=29.16 Aligned_cols=179 Identities=10% Similarity=0.091 Sum_probs=99.1
Q ss_pred chhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh-c---cC----ChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCCh
Q 043950 251 VLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL-I---HN----HKKSIKKVACWTISNITAGNREQIQAVIDAGLI 322 (458)
Q Consensus 251 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll-~---~~----~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~ 322 (458)
+++..+..+.......++. .. +...+++++++.+ . .. .+++|-.-....+..+-....+....+.+ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 5556666666665543322 22 3345666666633 1 12 13344333333333333322233444444 356
Q ss_pred HHHHHHhccC---ChhhHHHHHHHHHHhhcCCC-------HHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950 323 VPLVNVLQDA---EFDIKKEAALAIANATVRGT-------HEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 323 ~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~ 392 (458)
...+.++..+ -|+.+..-...+.++...+- ++..+ .++..+.-.++++++++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~-----~~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK-----LVIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 6677777653 47888887777777776431 11111 245666677789999999999999999998
Q ss_pred hchhhcccCCCCCchhHHHHHHHhcchHHHHHhh----hcCCChHHHHHHHHHHHHhc
Q 043950 393 VGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL----KSHDNNGIREKAVKILETYW 446 (458)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~ 446 (458)
...... ..+...|-+.-.++.+... .++.+....+.-..++..+|
T Consensus 195 ~~~~~~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 195 NVSKTN---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 777621 1234455455545555543 44455555555567777776
No 324
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=73.82 E-value=1.2e+02 Score=31.82 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 116 (458)
+-++-++...|.+++-.. ..- ....+|.|++-|.-.+...+|...+-+++.+|.+.... ..-.+|.+..
T Consensus 945 ~~vra~~vvTlakmcLah-~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam-----~d~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAH-DRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAM-----TDRYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhh-hHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHH-----HHHhhHHHHH
Confidence 567778888888886653 221 12368999988887765677887777788777742222 2245899999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCC--HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhh
Q 043950 117 LLASPSDDVREQAVWALGNVAADSPGCRNLVLREEA--LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPA 194 (458)
Q Consensus 117 ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~--l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 194 (458)
-|.++++-+|++++..|.+|.... .+.=.|. +..++.++ +.+++++..+-.+++.+..... .......+
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~--D~~edIr~~a~f~~~~vL~~~~--P~~f~~~F 1084 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALL--DANEDIRNDAKFYISEVLQSEE--PNFFPLNF 1084 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHc--ccCHHHHHHHHHHHHHHHhhcC--ccchHHHH
Confidence 999999999999999999996432 2222232 33344444 5567888988888888776531 22233445
Q ss_pred HHHHHHh
Q 043950 195 LPALAQL 201 (458)
Q Consensus 195 l~~l~~l 201 (458)
++.+..+
T Consensus 1085 Ve~i~~l 1091 (1529)
T KOG0413|consen 1085 VEYIIAL 1091 (1529)
T ss_pred HHHHHHH
Confidence 5544443
No 325
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=73.81 E-value=34 Score=25.42 Aligned_cols=70 Identities=16% Similarity=0.244 Sum_probs=51.1
Q ss_pred ChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhh-----h-cCCChHHHHH
Q 043950 364 CIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGL-----K-SHDNNGIREK 437 (458)
Q Consensus 364 ~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-----~-~~~~~~v~~~ 437 (458)
++..|..-+.++++.++..++.+|..+++.+... |...+.....+..+..+ . ...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 4666777778889999999999999999976654 56666665555555332 1 2347889999
Q ss_pred HHHHHHHh
Q 043950 438 AVKILETY 445 (458)
Q Consensus 438 a~~~l~~~ 445 (458)
+..+++..
T Consensus 106 ~~~l~~~w 113 (115)
T cd00197 106 AIELVQLW 113 (115)
T ss_pred HHHHHHHH
Confidence 99988764
No 326
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=73.06 E-value=15 Score=28.73 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950 293 SIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 293 ~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
--+..|...|+.|..+. -+..|+++|.+.+.++...|+.+|.+.....+
T Consensus 78 Is~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 78 ISPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp B-HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred cCHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 34566777777776654 37789999999999999999999999887654
No 327
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=72.74 E-value=56 Score=28.82 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHHHhchhhcccC---CCCCchhHHHHHHHhcchHHHHHhhhcCCC-hHHHHHHHHHHHHhcCCCC
Q 043950 376 DPKIVTVCLEGLENILKVGEAEKNTG---STIGDVNQYARLVEEDEGFKKIEGLKSHDN-NGIREKAVKILETYWCGRV 450 (458)
Q Consensus 376 ~~~v~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~~~ 450 (458)
+..+.+.++-.+.|++...+...... .+-...+.+...|.+.|.++.|..+..+.+ .+-......++.-+|.+.+
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 45688899999999998744322110 001234556788889999999999987763 3333456666666666553
No 328
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.62 E-value=1.2e+02 Score=31.25 Aligned_cols=251 Identities=14% Similarity=0.085 Sum_probs=145.8
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 043950 26 PAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVV 105 (458)
Q Consensus 26 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~ 105 (458)
..+=+.++++....+.+++..+-++-... +.+ .+++ ...-.|...+..++ ..+|...+++...-.. ..+.+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~-Pfp--ifiN-s~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKY-PFP--IFIN-SQLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhC-Cch--hhhh-HHHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchhh
Confidence 34446677777777777777777764432 222 2222 23344555566777 5788877777764322 22222
Q ss_pred Hh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCC
Q 043950 106 ID-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKP 184 (458)
Q Consensus 106 ~~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~ 184 (458)
.. ...+..+.....+.++.-|..++.+++.+..--|+ .+..+.++..-.++++.-=.+.++.+...++...
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s- 169 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS- 169 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh-
Confidence 21 23455555556678999999999999988654444 3445566655544544434466677777666542
Q ss_pred CCChhhhhhhHHHHHHhhcCCC--hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-CCccchhhHHHHHhH
Q 043950 185 QPPFDQVRPALPALAQLIHLDD--EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-PSPSVLTPALWTVGN 261 (458)
Q Consensus 185 ~~~~~~~~~~l~~l~~ll~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~l~~ 261 (458)
.....++.-.+..++...+ ...+...+.++..|..+.. ....+......++.. +..+....-+.++.+
T Consensus 170 ---k~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 170 ---KDFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ---hhhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 2233444455555665444 4455666777777763322 122345566666655 444445556677777
Q ss_pred hhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 262 IVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
++...-.. -.+-.+.+.+.++.+....++..+.|.+.+++.
T Consensus 241 Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 76422111 134577788888766466777778888877764
No 329
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=72.46 E-value=11 Score=26.43 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=45.0
Q ss_pred hhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHH
Q 043950 148 LREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLS 218 (458)
Q Consensus 148 ~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~ 218 (458)
.+...+.|+...+....+.++++..+.++.++...........-..++..+.....+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34456788888887778889999999999998876422111112334444444444556666666665553
No 330
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.64 E-value=35 Score=24.60 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=51.4
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 043950 64 QAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWAL 133 (458)
Q Consensus 64 ~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L 133 (458)
....+..|++-+..+. .-....++..+..++. .+.....+.+-|+...|.++=...++..+..+-.++
T Consensus 28 ~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567778888888887 4578889999999888 677888888889888877777666666665554443
No 331
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=71.56 E-value=30 Score=27.10 Aligned_cols=100 Identities=14% Similarity=0.027 Sum_probs=50.9
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHH
Q 043950 195 LPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCII 274 (458)
Q Consensus 195 l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 274 (458)
...++.+|+.+...-....+..|.+-..-..+... .+..+++..+++-=.....--+..|+..|+.+..+.
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA-~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY-------- 94 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAA-YVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY-------- 94 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHH-HHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST--------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC--------
Confidence 34566667665544444555555554422111222 344444444443322222223556777777765433
Q ss_pred hcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 275 NHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 275 ~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
-+++|+.+|.++ +..+...|+.+|.+...
T Consensus 95 ---NV~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 ---NVQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ---THHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ---cHHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 277899999888 88999999999998765
No 332
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=71.38 E-value=69 Score=27.84 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=69.5
Q ss_pred HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC-hhhHHHHHHHHHHHhhcCCHH
Q 043950 233 EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH-KKSIKKVACWTISNITAGNRE 311 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~v~~~a~~~l~nl~~~~~~ 311 (458)
+...++.++++++.++.. .-..++......-...-..+-.|-++.+..++.++. +.-+|..|+.++..++...+.
T Consensus 71 e~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~ 146 (249)
T PF06685_consen 71 EERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPI 146 (249)
T ss_pred hhhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCC
Confidence 445678889998766531 112222221111111111222456777777777653 457889999999999986656
Q ss_pred HHHHHHHcCChHHHHHH-hccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHH
Q 043950 312 QIQAVIDAGLIVPLVNV-LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPL 368 (458)
Q Consensus 312 ~~~~l~~~~~~~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L 368 (458)
.+..+++ .+..++.. +...+..+...-+..++.+--..-...++...+.|.++..
T Consensus 147 ~Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 147 SREEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred CHHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence 6666655 34444444 4443333444444444444322222345555666766553
No 333
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=71.29 E-value=1.2e+02 Score=31.50 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=84.7
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 043950 27 AMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI 106 (458)
Q Consensus 27 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~ 106 (458)
.+.+.+.++++..-...+.++..+..-+.-.... ...-.+.-..-....- ..++.....+|..++..+++....+.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3444455666666666666666664432111111 1111111111112222 46677788899999998888777776
Q ss_pred h-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC
Q 043950 107 D-HGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 107 ~-~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
. .+....++.++-+++.++.+.|...+...... ..|. +++..+++.. -........+.+..+....
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~--~~R~-----e~i~~ll~~~----~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDV--DGRL-----EAIQALLQSN----FSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcC--CcHH-----HHHHHHHHHh----HHHHHHHHHHHHHHHHhhh
Confidence 4 58899999999999999999999999998642 1111 2333333332 2334566677777776553
No 334
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=69.79 E-value=57 Score=31.59 Aligned_cols=82 Identities=9% Similarity=0.110 Sum_probs=55.1
Q ss_pred hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCC-------------HHHHHHHHHcCChHHHHHHhcc-CCh
Q 043950 269 QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGN-------------REQIQAVIDAGLIVPLVNVLQD-AEF 334 (458)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~-------------~~~~~~l~~~~~~~~L~~ll~~-~~~ 334 (458)
..+.+.+.++++.|+.+|....++.++..|+.+|..+..-+ .+....+.....+..|++.+-. ...
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~ 133 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGG 133 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCc
Confidence 34445578999999999987768889999999888886411 2334445556677777776553 334
Q ss_pred hhHHHHHHHHHHhhcC
Q 043950 335 DIKKEAALAIANATVR 350 (458)
Q Consensus 335 ~~~~~a~~~L~~l~~~ 350 (458)
.....++.++..+...
T Consensus 134 s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 134 SSLVNGVSILIELIRK 149 (475)
T ss_pred chHHHHHHHHHHHHHh
Confidence 5555666666666643
No 335
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.51 E-value=2.1e+02 Score=32.73 Aligned_cols=272 Identities=15% Similarity=0.108 Sum_probs=138.2
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC-CCCChh
Q 043950 111 VPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK-PQPPFD 189 (458)
Q Consensus 111 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~ 189 (458)
+..+...+..+++..+-.+..+++.++..-+.. .. -.+..+..+..+....++-.+..-.-++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f--~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PF--VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-ch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 455566666788888888889999888543321 11 12356677788866677766666666777776665 223333
Q ss_pred hhhhhHHHHHHhhcCC-ChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCc---cchhhHHHHHh-----
Q 043950 190 QVRPALPALAQLIHLD-DEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSP---SVLTPALWTVG----- 260 (458)
Q Consensus 190 ~~~~~l~~l~~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~---~~~~~a~~~l~----- 260 (458)
.....+..+..+.+++ ++.++..++.++..+...........++. -+..+..++-+..+ ++...--+++.
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~-tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEP-TLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHH-HHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 3455566666666654 56999999999998885544333322222 33444444443221 12211111111
Q ss_pred -Hhh-------cCChh--hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhc
Q 043950 261 -NIV-------MGDDF--QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQ 330 (458)
Q Consensus 261 -~l~-------~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~ 330 (458)
++. ..+.. ....+. ...+-...-++.++ ++.++.++..++-++-.-.+.+.. -.-+++.++.++.
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~r-ts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLR-TSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLS 1108 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHH-HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhc
Confidence 111 11111 111111 11122222233444 778888888888887643222111 0124555666555
Q ss_pred cCChhhHHHHHHHHHHhhcCCCHH---HHH--------------HHH-HCCChHHHHhhcc-CCCHHHHHHHHHHHHHHH
Q 043950 331 DAEFDIKKEAALAIANATVRGTHE---QIK--------------YLV-REGCIKPLCDLLL-CVDPKIVTVCLEGLENIL 391 (458)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~~~---~~~--------------~l~-~~~~l~~L~~ll~-~~~~~v~~~~~~~l~~l~ 391 (458)
+...-.+.....++..+......+ +.. ... +.|.--.+..+++ ..|.+..+.....+.+++
T Consensus 1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 543334344444444433221110 000 111 3344444555555 345667777777777743
No 336
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.18 E-value=2.6e+02 Score=34.42 Aligned_cols=179 Identities=8% Similarity=-0.043 Sum_probs=85.5
Q ss_pred hhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-----CCC----CccchhhHHHHH
Q 043950 189 DQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-----GHP----SPSVLTPALWTV 259 (458)
Q Consensus 189 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-----~~~----~~~~~~~a~~~l 259 (458)
....+++..++.-+.+++..+++.+..+|.+++.........+ +..+.+.+ ..+ ....+..-+.++
T Consensus 1122 ~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L-----~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~ 1196 (3550)
T KOG0889|consen 1122 KSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKL-----LEPFKDVLLSPIFKKPLRALPFTIQIGHLDAI 1196 (3550)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHH-----HHHHHHHHhccccccccccCCHHHHhhhHHHH
Confidence 4446777778888888888999999999999986543222212 22222222 111 111222222222
Q ss_pred hHhhcCCh-------hhHHHHH--hc---CChHH---HHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHH--HHc
Q 043950 260 GNIVMGDD-------FQTQCII--NH---GAVPC---LLALLIHNH---KKSIKKVACWTISNITAGNREQIQAV--IDA 319 (458)
Q Consensus 260 ~~l~~~~~-------~~~~~~~--~~---~~~~~---l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l--~~~ 319 (458)
..+....+ +...... .. .--.. +.+...... ....|..+..+++......+-..... ...
T Consensus 1197 ~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~ 1276 (3550)
T KOG0889|consen 1197 TFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELRE 1276 (3550)
T ss_pred HHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhh
Confidence 22222111 1111000 00 00001 111111110 11235556666665554211110111 123
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhcc
Q 043950 320 GLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 320 ~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~ 373 (458)
+++..+...+.+...++...+..++.+.... +....+...+.+.=+.|..+-+
T Consensus 1277 kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~-~~~~~ke~lq~~lrplL~~l~d 1329 (3550)
T KOG0889|consen 1277 KIIAVFFKSLYKRSSELIEVALEGLRKVLAQ-DVKLPKELLQSHLRPLLMNLSD 1329 (3550)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhhhhc-cccccHHHHHhhHHHHHHhhhH
Confidence 5778888889888999999999988888664 2233333444443333433333
No 337
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=68.40 E-value=1.2e+02 Score=31.06 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=65.9
Q ss_pred cHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHH
Q 043950 236 VCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315 (458)
Q Consensus 236 ~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 315 (458)
++..|-..+.. +..|..++..|+.++...+...-.+.+..+++.|+++|..+.+..+...|+.+|..+.-+-+.....
T Consensus 71 ~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 71 LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 44445555553 4578899999999999999999999999999999999998867777888888888887543332222
Q ss_pred HHHcCChHHHHHHhc
Q 043950 316 VIDAGLIVPLVNVLQ 330 (458)
Q Consensus 316 l~~~~~~~~L~~ll~ 330 (458)
.+. .++..+.+++.
T Consensus 149 ~L~-~Lf~If~Rl~~ 162 (668)
T PF04388_consen 149 HLP-DLFNIFGRLLS 162 (668)
T ss_pred HHH-HHHHHHHHHHH
Confidence 221 24555555553
No 338
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=68.14 E-value=50 Score=25.02 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=60.4
Q ss_pred hccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc---cCCCHHHHHHHHHHHHHHHHhchhhcccCCCCC
Q 043950 329 LQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL---LCVDPKIVTVCLEGLENILKVGEAEKNTGSTIG 405 (458)
Q Consensus 329 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll---~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 405 (458)
.++++...-...+.-++..+... ..+.. ++..|...+ +.++..+..+|+.+|..++..+...
T Consensus 12 T~~d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~-------- 76 (125)
T PF01417_consen 12 TSNDPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER-------- 76 (125)
T ss_dssp TSSSSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH--------
T ss_pred cCCCCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH--------
Confidence 34444445556667777777643 33333 255666666 6678889999999999999987764
Q ss_pred chhHHHHHHH-hcchHHHHHhhhc-CC-----ChHHHHHHHHHHHHhcCC
Q 043950 406 DVNQYARLVE-EDEGFKKIEGLKS-HD-----NNGIREKAVKILETYWCG 448 (458)
Q Consensus 406 ~~~~~~~~~~-~~~~~~~l~~l~~-~~-----~~~v~~~a~~~l~~~~~~ 448 (458)
+...+. ....++.+.++.. ++ ...|+++|..+++-+.+.
T Consensus 77 ----~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 77 ----FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp ----HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred ----HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 344443 3344555554432 11 134899999999776654
No 339
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=67.90 E-value=1.1e+02 Score=28.67 Aligned_cols=81 Identities=14% Similarity=0.070 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhcCCCchhh-HHhhhCCHH
Q 043950 81 PQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASP-----SDDVREQAVWALGNVAADSPGCRN-LVLREEALI 154 (458)
Q Consensus 81 ~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~ 154 (458)
.++..+++.||+|+..+++..++...+......+++.+... ...+.-.=++.|--+..-.+..|. .+.+.++++
T Consensus 111 ~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~ 190 (532)
T KOG4464|consen 111 MHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE 190 (532)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH
Confidence 47889999999999999999999999988888888876431 111222222333333322233333 455677888
Q ss_pred HHHHHhc
Q 043950 155 PLLAQLN 161 (458)
Q Consensus 155 ~l~~~l~ 161 (458)
.+.+.+.
T Consensus 191 ~lt~~le 197 (532)
T KOG4464|consen 191 LLTNWLE 197 (532)
T ss_pred HHHHHhh
Confidence 8887774
No 340
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.56 E-value=36 Score=32.45 Aligned_cols=128 Identities=12% Similarity=0.073 Sum_probs=70.9
Q ss_pred HhHhhcCChhhHHHHHhcCChHHHHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChh
Q 043950 259 VGNIVMGDDFQTQCIINHGAVPCLLALLIHNH---KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFD 335 (458)
Q Consensus 259 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 335 (458)
++..|.+.|.+.. ++-..|..+|...+ ++.+|...+.+|.-+--.+ .+.-..++..++.++..++..
T Consensus 3 ~aqv~~~yp~~~a-----~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~-----~i~~~~LL~lff~l~~~~dk~ 72 (616)
T KOG2229|consen 3 VAQVCPCYPEVLA-----NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKN-----LIVAEDLLELFFPLLRCGDKN 72 (616)
T ss_pred hhhcccccHHHHH-----hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccC-----cCCHHHHHHHHHHHHhcCchh
Confidence 3445555554433 34556777776653 5678888777777664321 111123566777778777777
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 336 IKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 336 ~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.|.-+..=+.....+.+......=....+-..++.+++.+++.--..++..+..+.+..-.
T Consensus 73 lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW 133 (616)
T KOG2229|consen 73 LRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIW 133 (616)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccc
Confidence 7665544333333221111111111222345677888888887666677777777665444
No 341
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=67.51 E-value=51 Score=31.60 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 043950 37 NSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVK 116 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 116 (458)
...|..|+++|..+++.-.......+.+ +.|+..|+++. ..-|..|+.++...+................+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 5567889999999988753333333322 26888888887 566777888888887743221111101123456666
Q ss_pred hhCC
Q 043950 117 LLAS 120 (458)
Q Consensus 117 ll~~ 120 (458)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 6663
No 342
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=67.21 E-value=16 Score=25.65 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=43.4
Q ss_pred HhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh----ccCChhhHHHHHHHH
Q 043950 274 INHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL----QDAEFDIKKEAALAI 344 (458)
Q Consensus 274 ~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll----~~~~~~~~~~a~~~L 344 (458)
++..++.++..++.+.++.++|.....++.++.....+.+ .+| -+.++..+ .+++..+...|..++
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i----~SG-W~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI----KSG-WKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH----Hhc-cHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3456788888887766688999999999999986443333 333 33444443 445666666665554
No 343
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=67.02 E-value=1.4e+02 Score=29.81 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHH
Q 043950 81 PQLQYEAAWALTNIASGTSMNTNVVI---DHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLL 157 (458)
Q Consensus 81 ~~i~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~ 157 (458)
.+.+.-|+.+|.-+..+.+.+..... .+..+..++..+. ..+.-+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 47777788888777765433332222 1233444444444 4566677899999999777 5555555442 33333
Q ss_pred HHhc---ccccHHHHHHHHHHHHHhhcC--CCCCChhhhhhhHHHHHHhhcC-CChHHHHHHHHHHHHhccCChhhHHHH
Q 043950 158 AQLN---EHAKLSMLRIATWTLSKLCKG--KPQPPFDQVRPALPALAQLIHL-DDEEVLSDACWTLSYLSYGTNDKIQVV 231 (458)
Q Consensus 158 ~~l~---~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~ 231 (458)
..+. ..++..++........|++-. ....+.....-+...+..++.. .|-+.....+.++++++..+....+ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 3332 223334444333333333221 1222222223333344444442 2345567788899999876654444 3
Q ss_pred HHhCcHHHHHHHhCC
Q 043950 232 IEAGVCRRLVELLGH 246 (458)
Q Consensus 232 ~~~~~i~~L~~ll~~ 246 (458)
...--+..+++-++.
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 333345555555544
No 344
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=66.66 E-value=42 Score=26.06 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHH
Q 043950 207 EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTV 259 (458)
Q Consensus 207 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l 259 (458)
.+....++.++......-+ ...+.+.++++.+..++.+ +..+..|+.+|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 7778888888888776333 3446677899999999954 44677787765
No 345
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.23 E-value=60 Score=30.05 Aligned_cols=131 Identities=12% Similarity=0.157 Sum_probs=87.4
Q ss_pred HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcC-CHHHHHH
Q 043950 237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAG-NREQIQA 315 (458)
Q Consensus 237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~ 315 (458)
+.-++..+++.+..+|..|+..+..+...++.....- ...+++.+..+..+. +..+|.....++-.+... .++. ..
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~-~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~-~s 136 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSH-LYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKED-QS 136 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHH-HHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhh-hc
Confidence 5667788899999999999999988876555433311 235677888888877 889999988888887652 2232 11
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhc
Q 043950 316 VIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLL 372 (458)
Q Consensus 316 l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll 372 (458)
..-.=+++.+...+..-.++++..++..+..++....+........ .++.+.+++
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i 191 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVI 191 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHH
Confidence 1112244555555666689999999999999988765555444333 344444443
No 346
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=66.17 E-value=59 Score=26.19 Aligned_cols=106 Identities=13% Similarity=0.106 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhcCCC-----Cc---cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH-h
Q 043950 37 NSLQLEATTQFRILLSIER-----SP---RIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVI-D 107 (458)
Q Consensus 37 ~~~~~~a~~~L~~l~~~~~-----~~---~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~-~ 107 (458)
...+..++..+..+....+ .+ ....++...+.+.+++.+.+++ +.+-..+++++..+... .+..+. +
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~~---~~~~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLSR---FRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3455667777776654431 12 3455667788899999998887 89999999999999862 333332 2
Q ss_pred CC-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhcCCCchhhH
Q 043950 108 HG-AVPIFVK-LLASPS--DDVREQAVWALGNVAADSPGCRNL 146 (458)
Q Consensus 108 ~~-~i~~L~~-ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~ 146 (458)
.+ .++.+.. ++.+++ ..-|+.++.++..++.+.....+.
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~l 154 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDL 154 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHH
Confidence 12 2444444 666533 467888999999998765444333
No 347
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.17 E-value=1.4e+02 Score=29.08 Aligned_cols=140 Identities=12% Similarity=0.032 Sum_probs=86.3
Q ss_pred HHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc--------CCChHHHHHHHHHHHHhccCChh
Q 043950 155 PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH--------LDDEEVLSDACWTLSYLSYGTND 226 (458)
Q Consensus 155 ~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~--------~~~~~~~~~~~~~l~~l~~~~~~ 226 (458)
.+++.+ .+.++..+..|+..|.. + ..+..++|.++.++. ..|-....+.+..++.+..+..-
T Consensus 211 ~It~a~-~g~~~~~r~eAL~sL~T---D------sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEAC-TGSDEPLRQEALQSLET---D------SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHH-hcCCHHHHHHHHHhhcc---C------ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 334444 34555566655554433 1 123455666666654 25677788888899998877665
Q ss_pred hHHHHHHhCcHHHHHHHhCC----------CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC-ChhhHH
Q 043950 227 KIQVVIEAGVCRRLVELLGH----------PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN-HKKSIK 295 (458)
Q Consensus 227 ~~~~~~~~~~i~~L~~ll~~----------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~v~ 295 (458)
..+..+ +.+++.++.++-. ..+.+|..|+..+..++......... +...++..+.+.+.+. ......
T Consensus 281 ~lepYl-h~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~ 358 (576)
T KOG2549|consen 281 FLEPYL-HQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTH 358 (576)
T ss_pred chhhHH-HHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhh
Confidence 444333 3477887777643 34568899999999988765544443 4456777777777655 244556
Q ss_pred HHHHHHHHHhh
Q 043950 296 KVACWTISNIT 306 (458)
Q Consensus 296 ~~a~~~l~nl~ 306 (458)
.-+...|..+.
T Consensus 359 YGai~gL~~lg 369 (576)
T KOG2549|consen 359 YGAIAGLSELG 369 (576)
T ss_pred hhHHHHHHHhh
Confidence 66666666654
No 348
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=65.09 E-value=2.1e+02 Score=31.31 Aligned_cols=180 Identities=12% Similarity=0.100 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHh
Q 043950 207 EEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALL 286 (458)
Q Consensus 207 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll 286 (458)
..+++.+.+++..+..+-.... -...++.+.+++..++++++...+..+........+.... .-..+++.++.-|
T Consensus 143 apVre~caq~L~~~l~~~~~s~----~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~-~~~~vl~~~i~~L 217 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESL----IKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQ-LLNLVLDFVIEGL 217 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHh----hHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 4678888888888775433211 1235678888888888888887776665554322122121 1235678888888
Q ss_pred ccCChhhHHHHHHHHHHHhhcCCHH-HHHHHHHcCChHHHHHHhccCChh--hHHHHHHHHHHhhcCCCHHHHHHH----
Q 043950 287 IHNHKKSIKKVACWTISNITAGNRE-QIQAVIDAGLIVPLVNVLQDAEFD--IKKEAALAIANATVRGTHEQIKYL---- 359 (458)
Q Consensus 287 ~~~~~~~v~~~a~~~l~nl~~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~~~~~l---- 359 (458)
.+. +..++..|+.++.-.++.... ..+.+.. ++..+...+..-+.- -.......+..++... +.....
T Consensus 218 ~ds-~ddv~~~aa~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~--evl~l~~~~n 292 (1549)
T KOG0392|consen 218 EDS-DDDVRSVAAQFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMHLLDELCIEN--EVLDLFEQQN 292 (1549)
T ss_pred hhc-chHHHHHHHHHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH--HHHHHHHHhh
Confidence 888 888999999888877653211 1111111 333344433322220 0111112222222211 111111
Q ss_pred HHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchh
Q 043950 360 VREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 360 ~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
.+.|.++.+...+.+.=..++..++..+..+......
T Consensus 293 ~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~~q 329 (1549)
T KOG0392|consen 293 LEVGLVPRLWPFLRHTISSVRRAALETLAMLLEADDQ 329 (1549)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1247778888888877777888888888888876643
No 349
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=63.47 E-value=40 Score=22.89 Aligned_cols=50 Identities=34% Similarity=0.527 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHH
Q 043950 381 TVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444 (458)
Q Consensus 381 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 444 (458)
..++.+|..+-..... .+.+...+.-..+..|..|++++|...|..++..
T Consensus 19 ~~~l~~L~~L~~~~~t--------------~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~ 68 (75)
T smart00509 19 SRCLDILKKLKKLPIT--------------VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKS 68 (75)
T ss_pred HHHHHHHHHHhcCCCC--------------HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4566667666543222 6677777777888999999999999999988864
No 350
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=62.34 E-value=1.5e+02 Score=28.43 Aligned_cols=261 Identities=11% Similarity=0.087 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCC----CCCChhhhhhhHH
Q 043950 121 PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGK----PQPPFDQVRPALP 196 (458)
Q Consensus 121 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~----~~~~~~~~~~~l~ 196 (458)
.++.+-...++++..+...-......+.+ .....+.....+..+|..-.....+++.+.+.. +.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 46667777777766654443332222222 112222222224456666666666666555432 2223345577888
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHhccCCh-hhHHHHHHhCcHHHHHHHhCCC-Cccch---hhHHHHHhHhhcCChhhHH
Q 043950 197 ALAQLIHLDDEEVLSDACWTLSYLSYGTN-DKIQVVIEAGVCRRLVELLGHP-SPSVL---TPALWTVGNIVMGDDFQTQ 271 (458)
Q Consensus 197 ~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~-~~~~~---~~a~~~l~~l~~~~~~~~~ 271 (458)
.+...|+.+-.+...++...++.+.+..+ .... .....|...+-++ -++-+ -...+.|..+...++...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p-----~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLP-----DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S-------TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-----HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh-
Confidence 88889988878888888888888875443 1111 1112222222221 12211 223334444443333222
Q ss_pred HHHhc----CChHHHHHHhccCChhhHHHHHHHHHHHhhcCCH-HHHHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHH
Q 043950 272 CIINH----GAVPCLLALLIHNHKKSIKKVACWTISNITAGNR-EQIQAVIDAGLIVPLVNVLQ-DAEFDIKKEAALAIA 345 (458)
Q Consensus 272 ~~~~~----~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~l~~~~~~~~L~~ll~-~~~~~~~~~a~~~L~ 345 (458)
... +++..+-+++.+. .. -..+...|..+...-+ +..+..+. .++..+..-|+ +...+..+..+..++
T Consensus 195 --~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~ 268 (435)
T PF03378_consen 195 --VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLS 268 (435)
T ss_dssp -----S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHH
T ss_pred --cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHH
Confidence 212 2344444566555 21 1346666666665322 22333222 24444555454 345666666666666
Q ss_pred HhhcCCCHHHHHHHHH---CCChHHHHhh-----cc-CCCHHHHHHHHHHHHHHHHhc
Q 043950 346 NATVRGTHEQIKYLVR---EGCIKPLCDL-----LL-CVDPKIVTVCLEGLENILKVG 394 (458)
Q Consensus 346 ~l~~~~~~~~~~~l~~---~~~l~~L~~l-----l~-~~~~~v~~~~~~~l~~l~~~~ 394 (458)
.++...+.+..-..++ .|....+..- ++ -..+.-++.+.-++.+++...
T Consensus 269 ~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 269 LFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 6654434444333333 3444433331 11 123334555666677776543
No 351
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.04 E-value=2.5e+02 Score=31.04 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHc-C-------ChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 296 KVACWTISNITAGNREQIQAVIDA-G-------LIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 296 ~~a~~~l~nl~~~~~~~~~~l~~~-~-------~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
+..+.+|+-++.-.++++..+... | ++..+-++..+.++++...|+.++..+..
T Consensus 1071 et~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1071 ETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 346677777776555666655542 2 34444455567788898888888877654
No 352
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.85 E-value=54 Score=34.08 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=66.4
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHH---hcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRIL---LSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTS 99 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l---~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~ 99 (458)
..+..-..+|.+++..+|..++..|... +....+.-...+ .-..|.+++.+...+ +-+...|+.++.+++..+.
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlv--hq~W~~vie~~~~k~-~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLV--HQTWPSVIECLLCKD-PLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHH--HhhhhHHHHHHhcCc-hHHHHHHHHHHHHHHHHhh
Confidence 4455667778899999999999888732 222212222222 246899999999998 8999999999999988766
Q ss_pred hhHHHHHhCCChHHHHHhhC
Q 043950 100 MNTNVVIDHGAVPIFVKLLA 119 (458)
Q Consensus 100 ~~~~~~~~~~~i~~L~~ll~ 119 (458)
++...-+-..++|.+-.++.
T Consensus 880 DFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 66555555567777776664
No 353
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.98 E-value=14 Score=33.26 Aligned_cols=62 Identities=8% Similarity=0.045 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCCchhhHHh
Q 043950 87 AAWALTNIASGTSMNTNVVIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAADSPGCRNLVL 148 (458)
Q Consensus 87 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 148 (458)
..+.+++++...++..+.+.+.|+++.++.-. .+.+|-+++..+.++.++..++...++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 67789999999999999999999999888744 457899999999999999988877665543
No 354
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=59.96 E-value=1.1e+02 Score=29.52 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=66.0
Q ss_pred HHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 043950 313 IQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILK 392 (458)
Q Consensus 313 ~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~ 392 (458)
+..++-..++-.+.+-....|.....++..++++|... ..+..++ +++.|.-+|..+..+-++.|+..+..+--
T Consensus 231 IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq---~VahEIv---~Leil~lLLe~PTddSvevaI~flkecGa 304 (739)
T KOG2140|consen 231 IGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQ---QVAHEIV---ALEILTLLLERPTDDSVEVAIAFLKECGA 304 (739)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 33333334555666777777888888899999998742 3333333 37777778887655555555555543321
Q ss_pred hchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950 393 VGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
..... ... .-.|.++++..++.. .++-.+.+.+|+.+|+....
T Consensus 305 kL~~V-------------Spr-~~n~IfErlR~ILhe--~Eld~rvqy~iEtlf~iRkd 347 (739)
T KOG2140|consen 305 KLAEV-------------SPR-ALNGIFERLRYILHE--GELDRRVQYMIETLFQIRKD 347 (739)
T ss_pred HHHHh-------------ChH-HHhHHHHHHHHHHhH--hhHHHHHHHHHHHHHHHHHH
Confidence 11110 000 123345666666533 33566777778877765533
No 355
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=59.16 E-value=46 Score=30.48 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCCCccHHHHHHcC--CHHHHHHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHHHHH------hCC
Q 043950 40 QLEATTQFRILLSIERSPRIEDVIQAG--VVPRFVEFLMRED--YPQLQYEAAWALTNIASGTSMNTNVVI------DHG 109 (458)
Q Consensus 40 ~~~a~~~L~~l~~~~~~~~~~~~~~~~--~i~~L~~ll~~~~--~~~i~~~a~~~L~~l~~~~~~~~~~~~------~~~ 109 (458)
++.|+..+..+ ..+ +.....+...+ ++..|++++..++ ...++..|+.+|..++.+.....+.+. ..|
T Consensus 239 RllAi~~l~~~-~~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 239 RLLAIANLVYI-HPE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHhh-CCC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 33444444443 222 45566676666 9999999998754 258999999999999996655555442 235
Q ss_pred ChHHHHH
Q 043950 110 AVPIFVK 116 (458)
Q Consensus 110 ~i~~L~~ 116 (458)
+++.+++
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555544
No 356
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.13 E-value=80 Score=29.29 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=88.7
Q ss_pred CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCC-hhhHHH
Q 043950 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGT-NDKIQV 230 (458)
Q Consensus 152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~-~~~~~~ 230 (458)
-+..++..+ .+.+..++..+..-+..+....+.........+++.+..++.+.+..++......+-.+.... .+....
T Consensus 59 tlkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 366788888 778888999999888887766444444455778888889999999999888888777755222 212121
Q ss_pred HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCCh-hhHHHHHhcCChHHHHHHhc
Q 043950 231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDD-FQTQCIINHGAVPCLLALLI 287 (458)
Q Consensus 231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~ll~ 287 (458)
++ .=+++.+...+.+-.+.++..++..+..+....+ ........ +++-+..++.
T Consensus 138 ~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~--il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK--ILENFKDVIS 192 (393)
T ss_pred hH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH--HHHHHHHHHH
Confidence 22 1245666666777888999999999988887653 33333332 4444444443
No 357
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=58.71 E-value=2.2e+02 Score=29.18 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 043950 34 SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPI 113 (458)
Q Consensus 34 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 113 (458)
..=+.+...++..+..+++.. ++... .++..|+.-|.+++ ..+...|...|.++....|..+..+ +..
T Consensus 315 D~L~~vk~raL~ti~~lL~~k-PEqE~-----~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-----i~E 382 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNK-PEQEN-----NLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-----IDE 382 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCC-cHHHH-----HHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh-----HHH
Confidence 445888999999999998874 34332 45778888899998 5888899999999988667666544 345
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHhh
Q 043950 114 FVKLLASPS--DDVREQAVWALGNVA 137 (458)
Q Consensus 114 L~~ll~~~~--~~~~~~a~~~L~~l~ 137 (458)
+-+++-.++ .....+|+.+|..+.
T Consensus 383 Ier~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 383 IERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred HHHHHcccCccccceeehhhhhhhhH
Confidence 555554433 344455666666555
No 358
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=57.79 E-value=1.8e+02 Score=27.95 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhHHhhhCCHH-HHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhh-hhhhHHHHHH
Q 043950 123 DDVREQAVWALGNVAADSPGCRNLVLREEALI-PLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQ-VRPALPALAQ 200 (458)
Q Consensus 123 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~l~~l~~ 200 (458)
...|-.++.+|+.++..-+...-. .... .++..| ++.+..-+..++-++...+.......... ...+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~----~~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQ----EIFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHH----HHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 456777888999888653221110 1233 366666 66665556666667776665542211111 3455666777
Q ss_pred hhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCc
Q 043950 201 LIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGV 236 (458)
Q Consensus 201 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 236 (458)
.|..+.+..-......+..+-.........+.+.|.
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~ 211 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGK 211 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 777444333333333334333333344455556665
No 359
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=57.36 E-value=67 Score=23.66 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=51.7
Q ss_pred CChHHHHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCC
Q 043950 277 GAVPCLLALLIHNH---KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRG 351 (458)
Q Consensus 277 ~~~~~l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~ 351 (458)
|++..+...+.+.. +..-|+.+..++..+..-....+. .+.|.++..|++. .++++..|+.++..+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666665552 335588888888888762222222 2566666666543 6789999999999998766
Q ss_pred CHHHHHHHHH
Q 043950 352 THEQIKYLVR 361 (458)
Q Consensus 352 ~~~~~~~l~~ 361 (458)
+.+....+.+
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6555555433
No 360
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=57.22 E-value=68 Score=23.58 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=52.6
Q ss_pred CChHHHHHHhcc---CChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCC
Q 043950 277 GAVPCLLALLIH---NHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRG 351 (458)
Q Consensus 277 ~~~~~l~~ll~~---~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~ 351 (458)
|++..+-..+.+ ..+...|+.+..++..+..-....+. .+.|.++..|+.. .++++..++.++..++..-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 455556566655 33667888999999998863333332 2556666666542 5589999999999998776
Q ss_pred CHHHHHHHH
Q 043950 352 THEQIKYLV 360 (458)
Q Consensus 352 ~~~~~~~l~ 360 (458)
+.+....+.
T Consensus 86 ~~~~l~~ll 94 (107)
T PF08064_consen 86 DEEDLGPLL 94 (107)
T ss_pred CHHHHHHHH
Confidence 665555443
No 361
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=56.86 E-value=1.6e+02 Score=27.04 Aligned_cols=212 Identities=10% Similarity=0.053 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCC
Q 043950 126 REQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLD 205 (458)
Q Consensus 126 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 205 (458)
|.....+|..+.. .+ ....++..+...+.+..++..+...+.++..-+... .......++..+..-+++.
T Consensus 4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCC
Confidence 3344555555543 21 222356667777767777777777776665544332 2223367778888888888
Q ss_pred ChHHHHHHHHHHHHhccC--ChhhHHHHHHhCcHHHHHHHhC----CCCccch---hhHHHHHhHhhcCChhhHHH----
Q 043950 206 DEEVLSDACWTLSYLSYG--TNDKIQVVIEAGVCRRLVELLG----HPSPSVL---TPALWTVGNIVMGDDFQTQC---- 272 (458)
Q Consensus 206 ~~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~i~~L~~ll~----~~~~~~~---~~a~~~l~~l~~~~~~~~~~---- 272 (458)
.+.+|..-+.+++..... +..... +. ..+++.|.+.++ ++-.... ..++.++..+..........
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 151 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLK-FA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNIS 151 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHH-HH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhh
Confidence 888888888888777641 111111 22 236666666664 3322221 11222221111111111000
Q ss_pred ---HH-hc--C--ChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHH
Q 043950 273 ---II-NH--G--AVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAAL 342 (458)
Q Consensus 273 ---~~-~~--~--~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~ 342 (458)
+. +. . .-+.+..-+ . +++.....+.++..+..+.......-.....-..++.++.+. ..++|+.|..
T Consensus 152 ~~~l~~~~kps~ll~~kvyskl--~-~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 152 FWSLALDPKPSFLLSEKVYSKL--A-SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhccCCCcchhcCHHHHhcc--C-CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00 00 0 111222221 1 223333344444444432211111111122455677777777 8999999999
Q ss_pred HHHHhhcCCC
Q 043950 343 AIANATVRGT 352 (458)
Q Consensus 343 ~L~~l~~~~~ 352 (458)
++..+.....
T Consensus 229 ~l~~l~~~~~ 238 (339)
T PF12074_consen 229 ALKKLYASNP 238 (339)
T ss_pred HHHHHHHhCh
Confidence 9999987644
No 362
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=56.65 E-value=32 Score=21.29 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=28.7
Q ss_pred HHHHHhcchHHHHHhhhcC-CChHHHHHHHHHHHH
Q 043950 411 ARLVEEDEGFKKIEGLKSH-DNNGIREKAVKILET 444 (458)
Q Consensus 411 ~~~~~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~ 444 (458)
.+.+.+.+.-..+..+..+ ++++++..|..++.+
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~ 47 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKK 47 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6778888888899999888 999999999998875
No 363
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=56.63 E-value=14 Score=19.47 Aligned_cols=14 Identities=7% Similarity=0.361 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHhh
Q 043950 293 SIKKVACWTISNIT 306 (458)
Q Consensus 293 ~v~~~a~~~l~nl~ 306 (458)
.+|..|+++|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 58999999999983
No 364
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=56.54 E-value=14 Score=28.95 Aligned_cols=125 Identities=9% Similarity=0.102 Sum_probs=82.3
Q ss_pred ChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHh-ccCChhhHHHHHH
Q 043950 266 DDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVL-QDAEFDIKKEAAL 342 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll-~~~~~~~~~~a~~ 342 (458)
++...+.+.+.+++..+.++++......++.....+++-+.. .++..+-++...+.+..++..- .-.+.++...=+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 445667777889999999999885477888888888887765 3445555666666666666543 3347788888888
Q ss_pred HHHHhhcCCCHHHHHHHHH--CCChHHHHh---hccCCCHHHHHHHHHHHHHH
Q 043950 343 AIANATVRGTHEQIKYLVR--EGCIKPLCD---LLLCVDPKIVTVCLEGLENI 390 (458)
Q Consensus 343 ~L~~l~~~~~~~~~~~l~~--~~~l~~L~~---ll~~~~~~v~~~~~~~l~~l 390 (458)
.|..++..-+.+....+.. .+-.+.+.. ...++|+-++.++-.++-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888877655555555443 234444443 44567766666555544443
No 365
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=55.76 E-value=62 Score=21.96 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=28.9
Q ss_pred HHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHH
Q 043950 411 ARLVEEDEGFKKIEGLKSHDNNGIREKAVKILET 444 (458)
Q Consensus 411 ~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 444 (458)
...+...+.-..+..|..|++++++..|..++..
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6677788877889999999999999999988864
No 366
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.75 E-value=34 Score=32.79 Aligned_cols=73 Identities=12% Similarity=0.001 Sum_probs=57.6
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHc
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMRE-DYPQLQYEAAWALTNIA 95 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~i~~~a~~~L~~l~ 95 (458)
+++..|.+.+++.++.+++.|+..|-.++..-+...-.++.+.++++.++++.+.. .+..+|..++..|....
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 45667778888888899999999888777666455556888999999999999876 54689998888876543
No 367
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=55.46 E-value=2.3e+02 Score=28.37 Aligned_cols=116 Identities=15% Similarity=0.096 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCCc--cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh---cCCHH
Q 043950 237 CRRLVELLGHPSP--SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT---AGNRE 311 (458)
Q Consensus 237 i~~L~~ll~~~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~---~~~~~ 311 (458)
+..+...+...++ .-...-||++|.++..-.+....-+--++++.|+.+..-. . -+..-+-..+|+. +..+.
T Consensus 483 i~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemK-r--gKdnKAVvASnIMyvvGQYpR 559 (1053)
T COG5101 483 IGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMK-R--GKDNKAVVASNIMYVVGQYPR 559 (1053)
T ss_pred HHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHh-h--cCCcchhhecceeeeeccchH
Confidence 4455555555543 3445679999999764443333222234566666555322 1 1111122233333 23333
Q ss_pred HHHHHHH--cCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHH
Q 043950 312 QIQAVID--AGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQ 355 (458)
Q Consensus 312 ~~~~l~~--~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~ 355 (458)
....-+. ..++..|.+.+...+..++..|+..+..++..+...+
T Consensus 560 FLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hF 605 (1053)
T COG5101 560 FLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHF 605 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHH
Confidence 3332221 3478889999999999999999999999998775444
No 368
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=55.19 E-value=52 Score=27.62 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=44.9
Q ss_pred HHHHhcCChHHHHHHhccCCh-----------------hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCC
Q 043950 271 QCIINHGAVPCLLALLIHNHK-----------------KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAE 333 (458)
Q Consensus 271 ~~~~~~~~~~~l~~ll~~~~~-----------------~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 333 (458)
..+.+.|++..++.+|..+.+ .++-..+...|..++.+++++...+.+. ++.++..+....
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~ 114 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhh
Confidence 334466777777777754311 3566788999999999988887777762 443333333322
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhch
Q 043950 334 FDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 334 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~ 395 (458)
...-..+..++..+..+ +++.+..+.+. .++.++.++.....+ ..-+..|..++..+.
T Consensus 115 ~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp H-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred ccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 22223466777777764 44555555444 488888888764332 234667777766543
No 369
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.18 E-value=3e+02 Score=29.62 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCH-HHHHHHHHCCChHHHH
Q 043950 291 KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTH-EQIKYLVREGCIKPLC 369 (458)
Q Consensus 291 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~l~~~~~l~~L~ 369 (458)
++.+|..+...|+-++...|+ .+++...+..+=-.|.+.+..||..++.+|-.+....+. ..... .-..+-..++
T Consensus 300 ~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l-FtsRFK~RIV 375 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL-FTSRFKDRIV 375 (1048)
T ss_pred chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH-HHHHHHHHHH
Confidence 789999999999999875554 345555666666678888999999999999999876321 12222 2233455666
Q ss_pred hhc-cCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 370 DLL-LCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 370 ~ll-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
++. ...+..|+...+... +...... .+ +..-+..+..|..+.+++++..|-..+..-
T Consensus 376 eMadrd~~~~Vrav~L~~~--~~~~~~g----------------~L-~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLC--LLLSSSG----------------LL-SDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHhhhcchhHHHHHHHHH--HHHhccc----------------cc-ChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 766 334555554444332 2222111 11 222256677788888888877666655443
No 370
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=55.16 E-value=14 Score=26.96 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHH
Q 043950 43 ATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQY 85 (458)
Q Consensus 43 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~ 85 (458)
+++.|..++.. ++.-..+++.|+++.|+.+|.+++ .++..
T Consensus 66 ~Ik~l~~La~~--P~LYp~lv~l~~v~sL~~LL~HeN-~DIai 105 (108)
T PF08216_consen 66 EIKKLSVLATA--PELYPELVELGAVPSLLGLLSHEN-TDIAI 105 (108)
T ss_pred HHHHHHHccCC--hhHHHHHHHcCCHHHHHHHHCCCC-cceeh
Confidence 45666666554 566778899999999999999998 56654
No 371
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=54.09 E-value=56 Score=20.89 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=35.0
Q ss_pred HHHHHHhcchHHHHHhh-hcCCChHHHHHHHHHHHHhcCCCCCC
Q 043950 410 YARLVEEDEGFKKIEGL-KSHDNNGIREKAVKILETYWCGRVVG 452 (458)
Q Consensus 410 ~~~~~~~~~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~~~ 452 (458)
-+..+++.|+...|..+ ...++++|.+.+.++++-+..+|..+
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~ 54 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEE 54 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 48889999999999988 45578999999999988777666543
No 372
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.04 E-value=2e+02 Score=30.86 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=71.5
Q ss_pred ccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhH
Q 043950 330 QDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQ 409 (458)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 409 (458)
.+-++++|..++..|+..+.. ....+.+..+++++-=.|.+.+.+||..++++|..++...+.. +..+.
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~----yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~-------~~L~l 365 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKS----YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDK-------DKLEL 365 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHh----ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccc-------hHHHH
Confidence 445899999999999999874 3455677788888888999999999999999999999874433 23455
Q ss_pred HHHHHHhcchHHHHHhhh-cCCChHHHHHHHHHH
Q 043950 410 YARLVEEDEGFKKIEGLK-SHDNNGIREKAVKIL 442 (458)
Q Consensus 410 ~~~~~~~~~~~~~l~~l~-~~~~~~v~~~a~~~l 442 (458)
|...| .+++.... .+.+..|+.....++
T Consensus 366 FtsRF-----K~RIVeMadrd~~~~Vrav~L~~~ 394 (1048)
T KOG2011|consen 366 FTSRF-----KDRIVEMADRDRNVSVRAVGLVLC 394 (1048)
T ss_pred HHHHH-----HHHHHHHHhhhcchhHHHHHHHHH
Confidence 55555 56677665 555666665554444
No 373
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=52.81 E-value=1.8e+02 Score=26.27 Aligned_cols=85 Identities=12% Similarity=0.183 Sum_probs=62.0
Q ss_pred HhCcHHHHHHHhCCC--CccchhhHHHHHhHhhcCChh--hHHHHHhcCChHHHHHHhccCC--hhhHHHHHHHHHHHhh
Q 043950 233 EAGVCRRLVELLGHP--SPSVLTPALWTVGNIVMGDDF--QTQCIINHGAVPCLLALLIHNH--KKSIKKVACWTISNIT 306 (458)
Q Consensus 233 ~~~~i~~L~~ll~~~--~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~~~l~~ll~~~~--~~~v~~~a~~~l~nl~ 306 (458)
+.|++..++..+... +...+-.-+.++-.+.++.+. ....+.+.|+++.++..+-++. +..+.......||.+.
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 347888888887764 445666777788888887665 3335568899999998887652 2368889999999999
Q ss_pred cCCHHHHHHHH
Q 043950 307 AGNREQIQAVI 317 (458)
Q Consensus 307 ~~~~~~~~~l~ 317 (458)
+.+......+-
T Consensus 173 K~n~~~f~~l~ 183 (303)
T PF12463_consen 173 KFNRDAFQRLN 183 (303)
T ss_pred CCCHHHHHHHH
Confidence 98877655543
No 374
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.67 E-value=14 Score=33.31 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc-ccccHHHHHHHHHHHHHhhcCC
Q 043950 128 QAVWALGNVAADSPGCRNLVLREEALIPLLAQLN-EHAKLSMLRIATWTLSKLCKGK 183 (458)
Q Consensus 128 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~-~~~~~~~~~~a~~~l~~l~~~~ 183 (458)
+..+.++++|...++.++.+.+.|+++-++.... ++.+|-+++....++.+|..++
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 4677999999999999999999999988887765 5668889999999999998875
No 375
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.47 E-value=21 Score=26.18 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHH
Q 043950 84 QYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPSDDVR 126 (458)
Q Consensus 84 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 126 (458)
....+..+..++. .|+.-..+++.|+++.|+.+|...+.++.
T Consensus 63 Ld~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 3557778888888 67888888999999999999998887654
No 376
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.64 E-value=25 Score=32.63 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=72.8
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC------CCHHHHHHHHHHHHHHHHhchh
Q 043950 323 VPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC------VDPKIVTVCLEGLENILKVGEA 396 (458)
Q Consensus 323 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~~~~l~~l~~~~~~ 396 (458)
..|..-+++...+-...|+.+|-.++.++...+...+..-.++..|+..+.- ....|+...+++|...--...+
T Consensus 48 ~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lpe 127 (594)
T KOG1086|consen 48 RLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLPE 127 (594)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCcc
Confidence 3344445555555566677777777777666655555554455555555541 2345555555555433211111
Q ss_pred h----------cccCCC--------------CCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCC
Q 043950 397 E----------KNTGST--------------IGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETYWCGRVV 451 (458)
Q Consensus 397 ~----------~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 451 (458)
. +..|.. -.........|.+..--..|..|+.+.+++--+.|.++|.++...|++
T Consensus 128 ~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~ 206 (594)
T KOG1086|consen 128 EPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEH 206 (594)
T ss_pred cchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 1 011110 011122234555555566778888998888888999999999887765
No 377
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=49.77 E-value=2.6e+02 Score=27.37 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=84.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc----c---ccHHHHHHHHHHHHHhhcCCCC
Q 043950 113 IFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE----H---AKLSMLRIATWTLSKLCKGKPQ 185 (458)
Q Consensus 113 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~----~---~~~~~~~~a~~~l~~l~~~~~~ 185 (458)
.++..+.+.++..+..|+..|. .++.... .++.++.++.. + .+-..........+.|..++.-
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~----TDsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLE----TDSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhc----cCccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 3444444456666666555542 2223222 35556665542 2 4556777788888888887544
Q ss_pred CChhhhhhhHHHHHHhhc----------CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCC--ccchh
Q 043950 186 PPFDQVRPALPALAQLIH----------LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPS--PSVLT 253 (458)
Q Consensus 186 ~~~~~~~~~l~~l~~ll~----------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~ 253 (458)
.-...+..++|.++..+- ++.+.++.-+...+..++......... ....++..+.+.+.++. .....
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 444556888888777664 234678888888888888665544443 55567788888877653 33444
Q ss_pred hHHHHHhHhh
Q 043950 254 PALWTVGNIV 263 (458)
Q Consensus 254 ~a~~~l~~l~ 263 (458)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 5555555553
No 378
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.74 E-value=4.3e+02 Score=29.54 Aligned_cols=200 Identities=12% Similarity=0.141 Sum_probs=97.8
Q ss_pred HHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHH
Q 043950 237 CRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAV 316 (458)
Q Consensus 237 i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l 316 (458)
+..+++-+...++..+..|+.-++.+....+......+-.-....+.++..+. +..||...-.++..+...-...+.+.
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566667777888999999999999854332211111011223334455555 88999999999998875433332222
Q ss_pred HHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhh-------------------ccCCCH
Q 043950 317 IDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDL-------------------LLCVDP 377 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~l-------------------l~~~~~ 377 (458)
.+ ..++...-.-.+.+..+-..|-..+............-.+.+........+. ++....
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~ 200 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQ 200 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhH
Confidence 22 2333333223333445555555555444331111111111111111111111 112234
Q ss_pred HHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 378 KIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 378 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
.+...++.++..++.......+ .......+...-.-+.++.+..++.+.+......++-.+
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~e-------l~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEE-------LHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHh-------hhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 4666677777777643222111 110112222223356777888888877766555555444
No 379
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.01 E-value=1e+02 Score=32.28 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=67.6
Q ss_pred hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhc----cCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcC
Q 043950 190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLS----YGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMG 265 (458)
Q Consensus 190 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~----~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~ 265 (458)
++..++.....++.+++..++..++.++.... .+.+.... ++. ..-+.++..+...++-+...|+.++.+++..
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlP-lvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLP-LVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhH-HHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 33566677788899999999999999887644 23332222 332 3568899999999999999999999999886
Q ss_pred ChhhHHHHHhcCChHHHHHHhc
Q 043950 266 DDFQTQCIINHGAVPCLLALLI 287 (458)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~ll~ 287 (458)
..+....=+-..++|.+-.++.
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 6654443333456666665554
No 380
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.60 E-value=53 Score=33.88 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCCc-----------------------------------cHHHHHHcCCHHHHHHhhcCCC-
Q 043950 36 DNSLQLEATTQFRILLSIERSP-----------------------------------RIEDVIQAGVVPRFVEFLMRED- 79 (458)
Q Consensus 36 ~~~~~~~a~~~L~~l~~~~~~~-----------------------------------~~~~~~~~~~i~~L~~ll~~~~- 79 (458)
|++++..|+.++.++.+.+ +. .+..+...++|..|+++|+-.+
T Consensus 675 Dpei~~~AL~vIincVc~p-p~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P 753 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPP-PTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP 753 (1516)
T ss_pred CHHHHHHHHhhhheeecCC-CCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence 6888888888888776643 11 1234445689999999997543
Q ss_pred ---CHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 043950 80 ---YPQLQYEAAWALTNIASGTSMNTNVVIDHG 109 (458)
Q Consensus 80 ---~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~ 109 (458)
...+|..|+++|.-++. ++..++.+.+..
T Consensus 754 ~t~aD~IRalAc~~L~GLaR-~~tVrQIltKLp 785 (1516)
T KOG1832|consen 754 PTTADCIRALACRVLLGLAR-DDTVRQILTKLP 785 (1516)
T ss_pred CCcHHHHHHHHHHHHhcccc-CcHHHHHHHhCc
Confidence 13789999999999999 578888776543
No 381
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.00 E-value=4e+02 Score=28.77 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=34.6
Q ss_pred hHHHHH-hhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhc
Q 043950 111 VPIFVK-LLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLN 161 (458)
Q Consensus 111 i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~ 161 (458)
+..|-+ +|++.+..++..++..+..+...+++.-..+.+.-.++.++..+.
T Consensus 468 vqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnme 519 (2799)
T KOG1788|consen 468 VQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNME 519 (2799)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhc
Confidence 334444 455677788888888888888777766555556666777776663
No 382
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=46.40 E-value=2.4e+02 Score=26.02 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=68.3
Q ss_pred CHHHHHHHhccc-----c-cHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc----------CCChHHHHHHHH
Q 043950 152 ALIPLLAQLNEH-----A-KLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH----------LDDEEVLSDACW 215 (458)
Q Consensus 152 ~l~~l~~~l~~~-----~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~----------~~~~~~~~~~~~ 215 (458)
.+|.++.++... . +.......+.++..|..+..-........++|.++..+- .+++.+|..+..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 456666665321 2 466677778888888888644444556778888876663 234688999999
Q ss_pred HHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCcc--chhhHHHHHhHh
Q 043950 216 TLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPS--VLTPALWTVGNI 262 (458)
Q Consensus 216 ~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~--~~~~a~~~l~~l 262 (458)
.+..++........ -+...++..+.+.+.++... ...-|+..|..+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999854332222 23445666777777665432 244555555554
No 383
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=46.33 E-value=1.1e+02 Score=28.11 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhCC---CCHHHHHHHHHHHHHhhcCCCchhhHH
Q 043950 82 QLQYEAAWALTNIASGTSMNTNVVIDHG--AVPIFVKLLAS---PSDDVREQAVWALGNVAADSPGCRNLV 147 (458)
Q Consensus 82 ~i~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~ 147 (458)
.+|..|+.++..+.. .+.....++..+ ++.-|++++.. -...++..|+.+|..++.+.....+.+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 455666666665555 566777777766 88999999876 347899999999999998776655543
No 384
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=45.94 E-value=3.6e+02 Score=27.84 Aligned_cols=113 Identities=11% Similarity=0.194 Sum_probs=69.5
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH-------CC---ChHHHHhhccCC-CHHHHHHHHHHHHHH
Q 043950 322 IVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR-------EG---CIKPLCDLLLCV-DPKIVTVCLEGLENI 390 (458)
Q Consensus 322 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-------~~---~l~~L~~ll~~~-~~~v~~~~~~~l~~l 390 (458)
+-.+...+.-..+.....++..+..+|..+.....+.+.. .. -+..|++.+... .......|...|..+
T Consensus 236 lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~veRF~piv~gl~~~e~~~l~vacmq~INal 315 (1102)
T KOG1924|consen 236 LLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPVERFRPIVEGLDFLEKQQLQVACMQFINAL 315 (1102)
T ss_pred HHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcchhhhhhHHHHHhccchHHHHHHHHHHHHHh
Confidence 4556666666677777778877777776654333333221 11 245566666654 567777788777766
Q ss_pred HHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHH
Q 043950 391 LKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKIL 442 (458)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l 442 (458)
.....+.+ ..-.++..+.+.|.-+.|.++....|+.. ....++.
T Consensus 316 ~t~p~dld-------fRlhlR~E~mr~gL~~~l~~l~~i~n~~l-dvqlkvf 359 (1102)
T KOG1924|consen 316 VTSPSDLD-------FRLHLRSEFMRDGLHKYLPDLTEINNDIL-DVQLKVF 359 (1102)
T ss_pred cCCHHHhh-------HHHHHHHHHHHHhHHHHHHHhhhhccHHH-HHHHHHH
Confidence 65554442 23446777788999999999976654443 3334443
No 385
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=45.65 E-value=37 Score=17.46 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhh
Q 043950 294 IKKVACWTISNIT 306 (458)
Q Consensus 294 v~~~a~~~l~nl~ 306 (458)
||..|+++|+++.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6888999999885
No 386
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=44.99 E-value=43 Score=28.18 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred cHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHH
Q 043950 236 VCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQA 315 (458)
Q Consensus 236 ~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~ 315 (458)
..+.+.+.+.+++.-.++.++.++.......... .++..+...+.++ +.-|+....|+|..++..+++....
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~-------~~l~~~~~~~~d~-~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFD-------ELLEIIEALLKDE-EYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHH-------HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhCHHHHHH
Q ss_pred HHHcCC--hHHHH
Q 043950 316 VIDAGL--IVPLV 326 (458)
Q Consensus 316 l~~~~~--~~~L~ 326 (458)
.++... ++...
T Consensus 193 ~l~~~~~~~~~~~ 205 (213)
T PF08713_consen 193 FLQKNSDRLSRWT 205 (213)
T ss_dssp HHHHS-----HHH
T ss_pred HHHHCcccCchhH
No 387
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=44.79 E-value=1.6e+02 Score=23.61 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=52.9
Q ss_pred hCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhcc
Q 043950 150 EEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSY 222 (458)
Q Consensus 150 ~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~ 222 (458)
.|.+...+..+....|..+....+.++.+.... ..-.......++|.+..++.+..+.-...++..+..+..
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 345666666665667777777777777754433 335556668899999999999999999999888887763
No 388
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=44.09 E-value=94 Score=22.84 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=47.9
Q ss_pred CChHHHHHHhcc----CChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 043950 320 GLIVPLVNVLQD----AEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 320 ~~~~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~ 393 (458)
|++..+-+.+.+ .+..-|..++.++..+...+...... +.+.+..+|+. ..++++..++++...+++.
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~------~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS------ARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 344455555554 46778999999999998744322222 35556666653 3558999999999988887
Q ss_pred chhh
Q 043950 394 GEAE 397 (458)
Q Consensus 394 ~~~~ 397 (458)
-+..
T Consensus 85 L~~~ 88 (107)
T PF08064_consen 85 LDEE 88 (107)
T ss_pred CCHH
Confidence 6653
No 389
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=41.32 E-value=19 Score=21.14 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=19.4
Q ss_pred CcHHHHHHHhCCCCccchhhHHHH
Q 043950 235 GVCRRLVELLGHPSPSVLTPALWT 258 (458)
Q Consensus 235 ~~i~~L~~ll~~~~~~~~~~a~~~ 258 (458)
.+...+...+.++++.+|..|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 466777888889999999988765
No 390
>PLN03205 ATR interacting protein; Provisional
Probab=40.54 E-value=3.1e+02 Score=25.63 Aligned_cols=162 Identities=13% Similarity=0.142 Sum_probs=95.8
Q ss_pred hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC---ChhhHHHHHHhCcHH---HHHHH-hCCCCccchhhHHHHHhHh
Q 043950 190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG---TNDKIQVVIEAGVCR---RLVEL-LGHPSPSVLTPALWTVGNI 262 (458)
Q Consensus 190 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~i~---~L~~l-l~~~~~~~~~~a~~~l~~l 262 (458)
..+.+++.|..+..-++..+...+++.|..+.++ +..+.+.-.+.+++. .+.+. ..+.++.++..|+.++..+
T Consensus 320 ~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 320 NLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred eHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 3466677777777777777777777776655432 333333334444333 22222 2345677888888887666
Q ss_pred hcCChh--hHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH---------------------Hc
Q 043950 263 VMGDDF--QTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI---------------------DA 319 (458)
Q Consensus 263 ~~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~---------------------~~ 319 (458)
....+. .+..+....+++.+..+|+...-..|+++|...+.-+.- .+.....+. ..
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k 478 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALE 478 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHH
Confidence 554432 334444667899999999887667899988766554432 111111111 00
Q ss_pred C---ChHHHHHHhc-----cCChhhHHHHHHHHHHhhcCCC
Q 043950 320 G---LIVPLVNVLQ-----DAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 320 ~---~~~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
| ++.-|.+.+. ..+.++++.++..|..++..+.
T Consensus 479 ~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 479 AFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 1 2333333343 2377889999999999987653
No 391
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=40.41 E-value=4e+02 Score=26.88 Aligned_cols=162 Identities=9% Similarity=0.046 Sum_probs=82.2
Q ss_pred CCChHHHHHHHHHHHHhccCChhhHHHHH---HhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHh--cCC
Q 043950 204 LDDEEVLSDACWTLSYLSYGTNDKIQVVI---EAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIIN--HGA 278 (458)
Q Consensus 204 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~ 278 (458)
.-..+.+-.++.+++.+..+........- ...++..++..+. .++..+..++++|.|+..+ +...+.+.. ..+
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i 632 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESI 632 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHH
Confidence 34456666777777766655442222111 1234455555554 4566778899999999875 433333321 122
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHhhcCCCH
Q 043950 279 VPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQD-----AEFDIKKEAALAIANATVRGTH 353 (458)
Q Consensus 279 ~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~ 353 (458)
+..+...-..+ +..++...+....|.+. -..+.-.+.+..+.+...+.. ++.+..-..+.|+++++...
T Consensus 633 ~~~~~~~~s~~-~knl~ia~atlaln~sv---~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~-- 706 (745)
T KOG0301|consen 633 LDPVIEASSLS-NKNLQIALATLALNYSV---LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD-- 706 (745)
T ss_pred hhhhhhhhccc-chhHHHHHHHHHHHHHH---HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc--
Confidence 22233322233 45566555544455442 011111123455555555432 24455566788888888753
Q ss_pred HHHHHHHHCCChHHHHhhcc
Q 043950 354 EQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 354 ~~~~~l~~~~~l~~L~~ll~ 373 (458)
.....+...-.+..+..-++
T Consensus 707 ~~~~~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 707 ASVIQLAKNRSVDSIAKKLK 726 (745)
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 33444455445666655554
No 392
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.22 E-value=4.7e+02 Score=27.57 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=85.8
Q ss_pred hhhHHHHHHhhcC-CChHHHHHHHHHHHHhccC------ChhhHHHHHHhCcHHHHHHHhCCCC--ccchhhHHHHHhHh
Q 043950 192 RPALPALAQLIHL-DDEEVLSDACWTLSYLSYG------TNDKIQVVIEAGVCRRLVELLGHPS--PSVLTPALWTVGNI 262 (458)
Q Consensus 192 ~~~l~~l~~ll~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~a~~~l~~l 262 (458)
...++.++.++.. .++.++..+-..|+.++.. ++...+.+...+.+..|+..+-.+. .......+..+-.+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l 268 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL 268 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence 6788999988874 4577887777777777754 3334555666777777777665532 22222333332222
Q ss_pred hcCChhhHHHHHhcCChHHHHHHhccCC---hhhHHHHHHHHHHHhhcCCHHHHHHHHHcC---ChHHHHHHhccCChhh
Q 043950 263 VMGDDFQTQCIINHGAVPCLLALLIHNH---KKSIKKVACWTISNITAGNREQIQAVIDAG---LIVPLVNVLQDAEFDI 336 (458)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~---~~~~L~~ll~~~~~~~ 336 (458)
. ...+..+. ... ...++.++. ++.+....+.++..-. ....+.+.+.. .++.-...+..+=...
T Consensus 269 l---~~~r~~~~-~~~---~~~i~~q~~~~~d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~ 338 (838)
T KOG2073|consen 269 L---NPRRDTVE-TNS---TTTILSQPPSERDPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFE 338 (838)
T ss_pred c---Cccccccc-ccc---eeeeecCCccccCccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchH
Confidence 2 11111000 000 012222111 2333333333333221 11112221111 2222222222223345
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC
Q 043950 337 KKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC 374 (458)
Q Consensus 337 ~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~ 374 (458)
|...+..+..+....+....+.+...+.++.+.+++..
T Consensus 339 Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~ 376 (838)
T KOG2073|consen 339 RLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFE 376 (838)
T ss_pred HHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHh
Confidence 67777788888777666666777777777777776654
No 393
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=40.19 E-value=2.9e+02 Score=25.12 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=100.3
Q ss_pred cHHHHHHHhCCC----CccchhhHHHHHhHhhcCChhhHHHHHhc-----------CChHHHHHHhc------cCChhhH
Q 043950 236 VCRRLVELLGHP----SPSVLTPALWTVGNIVMGDDFQTQCIINH-----------GAVPCLLALLI------HNHKKSI 294 (458)
Q Consensus 236 ~i~~L~~ll~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-----------~~~~~l~~ll~------~~~~~~v 294 (458)
++..|+.++-.. .-.+|..|+.++......+++....+++. .....+...|- +. ++--
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~ 113 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYR 113 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHH
Confidence 344444444332 34678899999999998888777666631 11222444444 22 4444
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHc------------CChHHHHHHhc-----cCChhhHHHHHHHHHHhhcCCCHHHHH
Q 043950 295 KKVACWTISNITAGNREQIQAVIDA------------GLIVPLVNVLQ-----DAEFDIKKEAALAIANATVRGTHEQIK 357 (458)
Q Consensus 295 ~~~a~~~l~nl~~~~~~~~~~l~~~------------~~~~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~ 357 (458)
-..|+.++..+..++++....+..- ..++.+..+|. +.++.++..-+..|+..... ++.-..
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~ 192 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVN 192 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHH
Confidence 5678888999988877765554321 13555555543 33677777777777777765 555566
Q ss_pred HHHHC-CChHHHHhhcc-C--CCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHH-HhcchHHHHHhh
Q 043950 358 YLVRE-GCIKPLCDLLL-C--VDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLV-EEDEGFKKIEGL 426 (458)
Q Consensus 358 ~l~~~-~~l~~L~~ll~-~--~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l 426 (458)
.+..+ ..++.|+.... . .+.-|+--|.-+|+....+..+... .....+...+ .+.|.-..+.++
T Consensus 193 ~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~-----~~R~~l~~ll~~riG~d~y~~kl 261 (312)
T PF04869_consen 193 DFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSP-----IPRATLHPLLTKRIGRDNYFSKL 261 (312)
T ss_dssp HHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCC-----C-HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCC-----cCHHHHHHHHHHhcCHHHHHHHH
Confidence 66655 57888888643 2 3444555566667777776543321 1233445555 355543333333
No 394
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.00 E-value=4.2e+02 Score=26.93 Aligned_cols=276 Identities=11% Similarity=0.108 Sum_probs=142.4
Q ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCC-hHHHHHHHHHHHHhccCChhhHHHH
Q 043950 153 LIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDD-EEVLSDACWTLSYLSYGTNDKIQVV 231 (458)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~ 231 (458)
+..+.+.+-.+.|+.-+..|-.+|..++.. ..++....-++..++ +.-+--|..++..+..... .....
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~s---------peclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSES---------PECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccC---------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHH
Confidence 456666775677888888888888888766 355666666665443 4445556666666653322 11112
Q ss_pred HHhCcHHHHHHHhCCCCccch----hhHHHHHhHhhcCCh---hhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHH
Q 043950 232 IEAGVCRRLVELLGHPSPSVL----TPALWTVGNIVMGDD---FQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISN 304 (458)
Q Consensus 232 ~~~~~i~~L~~ll~~~~~~~~----~~a~~~l~~l~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~n 304 (458)
...++-..++..+....+... ..-+..++.+....- ...+..+ -+.+..+.+.++.+ +.+--..+..++..
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F-Rd~v~~~~kfl~~~-~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF-RDPVDDVTKFLQMD-NVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchh-hhhHHHHHHHhccC-chHHHHHHHHHHHH
Confidence 223455667777776544433 333444445543221 1111111 24566667777666 44445555555655
Q ss_pred hhcC---------CHHHHHH---HHHcC---ChHHHHHHhccC-----ChhhHHHHHHHHHHhhcCC-------------
Q 043950 305 ITAG---------NREQIQA---VIDAG---LIVPLVNVLQDA-----EFDIKKEAALAIANATVRG------------- 351 (458)
Q Consensus 305 l~~~---------~~~~~~~---l~~~~---~~~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~~------------- 351 (458)
+... ...+++. +.+.. ++..-+.+|+.. +.+.+........++...+
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 5420 1111111 11111 233333334322 1222322333333332211
Q ss_pred ---------CHHHHHHHHHCCChHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHH
Q 043950 352 ---------THEQIKYLVREGCIKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKK 422 (458)
Q Consensus 352 ---------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (458)
....+..+.+...++.+.++..+-.+...+.++.+|..++..-...-+. .+...|...+ -.|..+.
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~----aeRa~yl~~L-v~Gvk~i 309 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNG----AERAKYLQHL-VEGVKRI 309 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHH-HHHHHHH
Confidence 1234566677777889999999888888888888888887654432110 1122233333 2455555
Q ss_pred HHhhhcCCChHHHHHHHHHHHHh
Q 043950 423 IEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 423 l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
|++-+.-.++.-+..-.+++.++
T Consensus 310 l~np~~LsD~~nyHeFCRllaRl 332 (1082)
T KOG1410|consen 310 LENPQGLSDPANYHEFCRLLARL 332 (1082)
T ss_pred HhCCcCCCCcchHHHHHHHHHHH
Confidence 55555555566665556666554
No 395
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.64 E-value=6.3e+02 Score=28.63 Aligned_cols=119 Identities=8% Similarity=0.121 Sum_probs=78.9
Q ss_pred HHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc--CCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhh
Q 043950 273 IINHGAVPCLLALLIHNHKKSIKKVACWTISNITA--GNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANAT 348 (458)
Q Consensus 273 ~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~ 348 (458)
.++...+|.+-+.+.+. .++-+.+-.|.+.-+.. .+....+.+...+.+..++....++ +.+.+.-.+..|++-+
T Consensus 1536 ~vdlq~iP~F~~ffySs-~~e~~t~R~Wvl~LV~~glks~~D~ql~~~~~~~~~~lsf~sS~l~~~~S~~LIL~~L~~~V 1614 (1758)
T KOG1791|consen 1536 IVDLQGIPIFHRFFYSS-VFEHHTEREWVLELVSKGLKSCPDYQLLQIRNIFETLLSFYSSPLASEESKRLILATLQKGV 1614 (1758)
T ss_pred hcccCCCccHHHHHHhc-cccccchhhhhHHHHHHHhcCchhhhHHhhcCcceEeehhhcchhHHHHHHHHHHHHHHhcC
Confidence 34566788888888776 66555566666665543 2345667777888888888888875 5666777788888887
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhccCC--CHHHHHH-HHHHHHHHHHh
Q 043950 349 VRGTHEQIKYLVREGCIKPLCDLLLCV--DPKIVTV-CLEGLENILKV 393 (458)
Q Consensus 349 ~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~-~~~~l~~l~~~ 393 (458)
.... .....+...|....+..++.+. ++-.... .+..+..+...
T Consensus 1615 k~p~-~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~a 1661 (1758)
T KOG1791|consen 1615 KFPF-YAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVA 1661 (1758)
T ss_pred CCcH-HHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHh
Confidence 7532 3345556789999999999864 3333333 45555555543
No 396
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=38.42 E-value=3.1e+02 Score=24.94 Aligned_cols=150 Identities=16% Similarity=0.110 Sum_probs=90.2
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHH---------c--CChHHHHHHhc------cCChhhHHHHHHHHHHhhcCCCH
Q 043950 291 KKSIKKVACWTISNITAGNREQIQAVID---------A--GLIVPLVNVLQ------DAEFDIKKEAALAIANATVRGTH 353 (458)
Q Consensus 291 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~---------~--~~~~~L~~ll~------~~~~~~~~~a~~~L~~l~~~~~~ 353 (458)
...+|..|+.++.....++++....+++ . .....++..|- +.|+.-.-.|+.+|.++.... .
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn-~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDN-P 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT--H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcC-H
Confidence 5689999999999999888777666663 1 12223555554 334444456888899998753 3
Q ss_pred HHHHHHHHC--C----------ChHHHHhhcc-----CCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHh
Q 043950 354 EQIKYLVRE--G----------CIKPLCDLLL-----CVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEE 416 (458)
Q Consensus 354 ~~~~~l~~~--~----------~l~~L~~ll~-----~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (458)
+....+.+- | .++.+..++. ..++.++..-+.+|...+-..... ...++.+
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~A------------V~~FL~~ 197 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDA------------VNDFLSE 197 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHH------------HHHHHCS
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHH------------HHHHHcC
Confidence 333332221 1 2444544443 346777777777777776554443 4677777
Q ss_pred cchHHHHHhhh---cCCChHHHHHHHHHHHHhcCCCCCCC
Q 043950 417 DEGFKKIEGLK---SHDNNGIREKAVKILETYWCGRVVGP 453 (458)
Q Consensus 417 ~~~~~~l~~l~---~~~~~~v~~~a~~~l~~~~~~~~~~~ 453 (458)
.+.+..|.... .+.+.-|+-.+.-+|--+++....++
T Consensus 198 ~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s 237 (312)
T PF04869_consen 198 GSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDS 237 (312)
T ss_dssp TTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SC
T ss_pred cchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCC
Confidence 77888888753 33456689999999999888664443
No 397
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=38.28 E-value=68 Score=23.96 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=31.9
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 043950 67 VVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVID 107 (458)
Q Consensus 67 ~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~ 107 (458)
+++.|+.-|.+++ +++...|+.+|...+.+. .....++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999 899999999999999954 55555543
No 398
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=38.09 E-value=1.1e+02 Score=19.60 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=32.5
Q ss_pred CHHHHHHHHHCCChHHHHhhccC-CCHHHHHHHHHHHHHHHHhch
Q 043950 352 THEQIKYLVREGCIKPLCDLLLC-VDPKIVTVCLEGLENILKVGE 395 (458)
Q Consensus 352 ~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~~~~l~~l~~~~~ 395 (458)
+...+..+.+.|+.+.+-.+-.. ++++|...+-.++.-++...+
T Consensus 8 T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~ 52 (58)
T PF04064_consen 8 TREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEP 52 (58)
T ss_pred cHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 56778888999998888877664 577888877776666665433
No 399
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=37.36 E-value=2.2e+02 Score=23.04 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhh-cCCHHHHHHH
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNIT-AGNREQIQAV 316 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~-~~~~~~~~~l 316 (458)
+.|+.+|+.++ ++......|+.+.+.-.... .....+..+-|.+.+.+. ...-...|......+. .-..+.+.++
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~-~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSL-SENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHh-hccchHHHHHHHHhCCchhhhhHHHHH
Q ss_pred HHcCChHHHHHHhccC-ChhhHHHHHHHHHHhh-------cCCCHHHHHHHHHCCChHHHHhhccCCCH-HHHHHHHHHH
Q 043950 317 IDAGLIVPLVNVLQDA-EFDIKKEAALAIANAT-------VRGTHEQIKYLVREGCIKPLCDLLLCVDP-KIVTVCLEGL 387 (458)
Q Consensus 317 ~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~-------~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~~~~~l 387 (458)
++. +++...+.|..+ +.++....+...+.++ .....+..+.+... .++.+-+++....+ ....+++.-+
T Consensus 82 ~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~-mv~Sv~elV~~g~E~~~l~rgl~~~ 159 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPK-MVKSVKELVERGMEVGFLRRGLRDF 159 (174)
T ss_pred HHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHH
Q ss_pred HHHHHhc
Q 043950 388 ENILKVG 394 (458)
Q Consensus 388 ~~l~~~~ 394 (458)
.+++...
T Consensus 160 e~~v~~~ 166 (174)
T PF04510_consen 160 ESFVSRQ 166 (174)
T ss_pred HHHHHHH
No 400
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=37.21 E-value=4.6e+02 Score=26.60 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=51.7
Q ss_pred hhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhH-------HHHHH-hCcHHHHHHHhCCCCccchhhHHHHHhH
Q 043950 190 QVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKI-------QVVIE-AGVCRRLVELLGHPSPSVLTPALWTVGN 261 (458)
Q Consensus 190 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~-------~~~~~-~~~i~~L~~ll~~~~~~~~~~a~~~l~~ 261 (458)
..++-+..+++.++.+|++++..++..+......+.... +.+.. .+.+..+.+-+. ++..+...+-+|+.
T Consensus 45 ~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~--~~n~Kk~laDIlSv 122 (878)
T KOG2005|consen 45 QLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA--DSNLKKWLADILSV 122 (878)
T ss_pred HhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc--CchhHhHHHHHHHH
Confidence 346778899999999999999999999988775443222 11111 133334444333 34578888899988
Q ss_pred hhcCChhh
Q 043950 262 IVMGDDFQ 269 (458)
Q Consensus 262 l~~~~~~~ 269 (458)
|+...++.
T Consensus 123 Lamt~se~ 130 (878)
T KOG2005|consen 123 LAMTMSER 130 (878)
T ss_pred Hheeeccc
Confidence 88655443
No 401
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=36.57 E-value=49 Score=29.67 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=44.0
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhhcCC------C-------HHHHHHHHHCCChHHHHhhcc
Q 043950 319 AGLIVPLVNVLQDAEFDIKKEAALAIANATVRG------T-------HEQIKYLVREGCIKPLCDLLL 373 (458)
Q Consensus 319 ~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------~-------~~~~~~l~~~~~l~~L~~ll~ 373 (458)
...+..+++-|...+...+..|+.+|..++.+. . ..+...+.+.|+++.|..++.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456778888899889999999999999998764 1 234556778899999999876
No 402
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.96 E-value=9.9e+02 Score=30.08 Aligned_cols=298 Identities=8% Similarity=0.072 Sum_probs=142.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC------CCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 043950 24 ILPAMVAGVWSDDNSLQLEATTQFRILLSIE------RSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASG 97 (458)
Q Consensus 24 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~ 97 (458)
.++.+++.+..++..+...+..++..+.... .......-.-.++++.+++++.++.+ --+...+..|..+...
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~w-y~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTW-YAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhH-HHHcCCCceeeeehhh
Confidence 4778888888888888888777777553321 01111111223566677777766653 3333333344444433
Q ss_pred ChhhHHHHH--hCCChHHHHHhhCC-----C--CHHHHHHH-HHHHHHhhc--CCCchhhHHhhhCCHHHHHHHhccccc
Q 043950 98 TSMNTNVVI--DHGAVPIFVKLLAS-----P--SDDVREQA-VWALGNVAA--DSPGCRNLVLREEALIPLLAQLNEHAK 165 (458)
Q Consensus 98 ~~~~~~~~~--~~~~i~~L~~ll~~-----~--~~~~~~~a-~~~L~~l~~--~~~~~~~~~~~~~~l~~l~~~l~~~~~ 165 (458)
.+ ...+. ...++..+...+.. + ..+..... ...+..+.. ..+..+.. ...+.+.+++..+ .+++
T Consensus 1064 ~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~-~~~~~~~~lv~eL-~npN 1139 (3550)
T KOG0889|consen 1064 MP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAK-SAMNVFSPLVLEL-FNPN 1139 (3550)
T ss_pred ch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHH-cCCc
Confidence 33 22221 12344555554443 1 11122222 222222222 11111111 1235677777777 6677
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHH-HH----hhcCCChHHHHHHHHHHHHhccCChhhHH---HHH-----
Q 043950 166 LSMLRIATWTLSKLCKGKPQPPFDQVRPALPAL-AQ----LIHLDDEEVLSDACWTLSYLSYGTNDKIQ---VVI----- 232 (458)
Q Consensus 166 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l-~~----ll~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~----- 232 (458)
..++..+...|.+++..............-+.+ .. -+....-..+.-.+.++..+....+.... .+.
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 789999999999988775222222222222222 12 22222334444444444443322221110 000
Q ss_pred --------HhCcHHHHHHHhCCCC----ccchhhHHHHHhHhhcCChhhHH--HHHhcCChHHHHHHhccCChhhHHHHH
Q 043950 233 --------EAGVCRRLVELLGHPS----PSVLTPALWTVGNIVMGDDFQTQ--CIINHGAVPCLLALLIHNHKKSIKKVA 298 (458)
Q Consensus 233 --------~~~~i~~L~~ll~~~~----~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~v~~~a 298 (458)
+...+- +.+.....+ ...|..+...++......+.... .-...+++..+.+.+.++ .+++...+
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVA 1297 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 000111 222222211 23466666666665544433211 122457788888888888 88888888
Q ss_pred HHHHHHhhcCCHHHHHHHHHcCChHHHHHH
Q 043950 299 CWTISNITAGNREQIQAVIDAGLIVPLVNV 328 (458)
Q Consensus 299 ~~~l~nl~~~~~~~~~~l~~~~~~~~L~~l 328 (458)
..++......+...-...++.+.-|.|..+
T Consensus 1298 ~~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1298 LEGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 888888776543333444444433444433
No 403
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.71 E-value=4.7e+02 Score=26.83 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=41.8
Q ss_pred CCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc
Q 043950 139 DSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH 203 (458)
Q Consensus 139 ~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~ 203 (458)
..|.+|..+...|++..+++.+.++.......-+..+|.+|.... .........-+...+++|.
T Consensus 363 ~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d-~lnmdldf~Slelmi~LL~ 426 (865)
T KOG2152|consen 363 VMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRD-KLNMDLDFLSLELMIHLLR 426 (865)
T ss_pred cChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhh-hhcccccchhHHHHHHHHh
Confidence 347789999999999999999987776666676766777665542 1112222333444455554
No 404
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.47 E-value=64 Score=25.00 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=43.6
Q ss_pred ChHHHHHHhccCCh---hhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHH
Q 043950 278 AVPCLLALLIHNHK---KSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAI 344 (458)
Q Consensus 278 ~~~~l~~ll~~~~~---~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L 344 (458)
+++.+.+.+....+ ..+...+..++..+..- -....+.+.++++.++.++. ++.++..|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~--~~~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISW--IPIELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT--S-HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh--CCHHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 45555555555422 67888889999988873 23455667789999999995 456688887765
No 405
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=34.92 E-value=97 Score=26.00 Aligned_cols=95 Identities=11% Similarity=0.142 Sum_probs=31.5
Q ss_pred cchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHh
Q 043950 250 SVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVL 329 (458)
Q Consensus 250 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll 329 (458)
.+...++..|..++.++.+....+.+. ++.+...+... ....-..+..++..+..++++....+.+. .+..++.++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~-~~~~~~~~~d~l~~i~~dN~~L~~~i~e~-~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL-QIGYGLGALDVLTEIFRDNPELCESISEE-HIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC-CH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh-hccCCchHHHHHHHHHHCcHHHHHHhhHH-HHHHHHHHH
Confidence 355678899999999888777766543 33333333322 11122346777788887777766666554 477888888
Q ss_pred ccCChhhHHHHHHHHHHhhcC
Q 043950 330 QDAEFDIKKEAALAIANATVR 350 (458)
Q Consensus 330 ~~~~~~~~~~a~~~L~~l~~~ 350 (458)
...... ..-+..|..++..
T Consensus 152 ~~~gr~--~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCVC 170 (207)
T ss_dssp ---------------------
T ss_pred HHcCCC--hHHHHHHhhhccc
Confidence 763222 2234555555543
No 406
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=34.72 E-value=3.2e+02 Score=24.09 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=40.6
Q ss_pred HhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 043950 20 TKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIAS 96 (458)
Q Consensus 20 ~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~ 96 (458)
...+.+..|.+.|..+|+..+ .+.++++.. .+++...+|.|+..-. + +.+...+++.|.+++-
T Consensus 10 dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 10 DCLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred hHHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 445677888888887776665 444444433 1334455665544422 3 6888999999999987
No 407
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=34.22 E-value=1.7e+02 Score=21.59 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=47.0
Q ss_pred CChHHHHHHhccC----ChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHhhccC--CCHHHHHHHHHHHHHHHHh
Q 043950 320 GLIVPLVNVLQDA----EFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCDLLLC--VDPKIVTVCLEGLENILKV 393 (458)
Q Consensus 320 ~~~~~L~~ll~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~~~~l~~l~~~ 393 (458)
|++..+-+.+.+. +..-|+.++.++..+.......... +.+.+..+|++ ..++++..++.+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~------a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISS------ALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 3444555555443 3455889999999998754322222 35566666654 4677999999999988886
Q ss_pred chhh
Q 043950 394 GEAE 397 (458)
Q Consensus 394 ~~~~ 397 (458)
-+..
T Consensus 85 L~~~ 88 (107)
T smart00802 85 LKEE 88 (107)
T ss_pred CCHH
Confidence 6553
No 408
>PRK09169 hypothetical protein; Validated
Probab=34.19 E-value=8.8e+02 Score=29.00 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=45.2
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 043950 25 LPAMVAGVW--SDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNT 102 (458)
Q Consensus 25 i~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~ 102 (458)
+..+++.+. .+++..+..+. .|...+..+ ......+-..++-..+-.+-+-++.+..+..+..+-..+.. .+..+
T Consensus 165 v~~lLNalSKWP~~~~c~~aa~-~lA~~la~~-~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~-~~~l~ 241 (2316)
T PRK09169 165 FALLLNALSKWPDNTDCQTAAE-QLADRLASD-SRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLAD-EPGLL 241 (2316)
T ss_pred HHHHHHHhccCCCchHHHHHHH-HHHHHhccC-HHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhc-ChHHH
Confidence 444444444 23444444443 333333332 33334443444444444444556644444444444444443 44444
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 043950 103 NVVIDHGAVPIFVKLLAS-PSDDVREQAVWALGN 135 (458)
Q Consensus 103 ~~~~~~~~i~~L~~ll~~-~~~~~~~~a~~~L~~ 135 (458)
..+-.. -+..+++-|+. +..+....++..|..
T Consensus 242 ~~l~~q-~va~~LNAlSKWp~~~~c~~aa~~lA~ 274 (2316)
T PRK09169 242 QSLRAQ-EVALLLNALSKWPDDEACRQAAEALAA 274 (2316)
T ss_pred HhcCHH-HHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 333222 24455555544 333333334444443
No 409
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.43 E-value=6.5e+02 Score=26.61 Aligned_cols=39 Identities=21% Similarity=0.126 Sum_probs=32.0
Q ss_pred hhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcC
Q 043950 144 RNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKG 182 (458)
Q Consensus 144 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~ 182 (458)
.+.+.+...++.++.++..+.++.++..+..+|+.+.+.
T Consensus 183 iq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 183 IQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 345566778999999998888888999998888888776
No 410
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.41 E-value=7.9e+02 Score=27.62 Aligned_cols=253 Identities=13% Similarity=0.108 Sum_probs=124.0
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHcCCHHH----HHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 043950 23 EILPAMVAGVWSDDNSLQLEATTQFRILLSIERSPRIEDVIQAGVVPR----FVEFLMREDYPQLQYEAAWALTNIASGT 98 (458)
Q Consensus 23 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~----L~~ll~~~~~~~i~~~a~~~L~~l~~~~ 98 (458)
.-+..+++.|...|+..+..|+.-|.++....+.+... |++|. ..+++.+.+ ..+|..+-.++.++...
T Consensus 41 sel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~-----~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~- 113 (1312)
T KOG0803|consen 41 SELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELK-----GILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTK- 113 (1312)
T ss_pred HHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHh-----hhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHH-
Confidence 44778888888999999999999999996654222222 23433 345556666 89999999999988772
Q ss_pred hhhHHHHHh--CCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhC--CHHHHHHHhcc------------
Q 043950 99 SMNTNVVID--HGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREE--ALIPLLAQLNE------------ 162 (458)
Q Consensus 99 ~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~l~~~l~~------------ 162 (458)
.++.+.. ...++...-.-.+....+...|...+..... .+..+......+ ......+.+..
T Consensus 114 --lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~-~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~ 190 (1312)
T KOG0803|consen 114 --LKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA-EEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTL 190 (1312)
T ss_pred --HHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC-hhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhc
Confidence 2222111 1223333333333444555555555554433 112222221111 11111111110
Q ss_pred ------cccHHHHHHHHHHHHHhhcCC---CCCC--hhhhhh--hHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHH
Q 043950 163 ------HAKLSMLRIATWTLSKLCKGK---PQPP--FDQVRP--ALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQ 229 (458)
Q Consensus 163 ------~~~~~~~~~a~~~l~~l~~~~---~~~~--~~~~~~--~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~ 229 (458)
...+.+...++-++..+.... +... ...... .-..+-.++++..+.+......++..+...-....-
T Consensus 191 s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~ 270 (1312)
T KOG0803|consen 191 SSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVM 270 (1312)
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcc
Confidence 011233444444444444221 1111 011111 223466778888888988888888888754333311
Q ss_pred HHHHhCcHH-HHHHHhCCCCccchhhHHHHHhHh-hcCChhhHHHH--HhcCChHHHHHHhc
Q 043950 230 VVIEAGVCR-RLVELLGHPSPSVLTPALWTVGNI-VMGDDFQTQCI--INHGAVPCLLALLI 287 (458)
Q Consensus 230 ~~~~~~~i~-~L~~ll~~~~~~~~~~a~~~l~~l-~~~~~~~~~~~--~~~~~~~~l~~ll~ 287 (458)
-.+...+. .+.....+.+ .+.......+... ....+.....- ...++++.+.++++
T Consensus 271 -~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 271 -ESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred -hhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 11122222 3333333333 3333444444322 22222222222 34567777777776
No 411
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.93 E-value=5.6e+02 Score=25.68 Aligned_cols=136 Identities=15% Similarity=0.058 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCCh--hhhhhhHHHH
Q 043950 121 PSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPF--DQVRPALPAL 198 (458)
Q Consensus 121 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~l~~l 198 (458)
-++.+|..++..|+--+..-|. .+....++.+.--.| .+.+..++.....++..|+...|.... .........+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4566777677666655544443 233333444444444 566788999999999999998766652 2235566667
Q ss_pred HHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCC
Q 043950 199 AQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGD 266 (458)
Q Consensus 199 ~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 266 (458)
++++..+..-++..++..+..+..-. ..+..-+..+..++-+..++-+......+.++|...
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICKID 424 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 77777554448877777776654211 222223444455565555554444444445554433
No 412
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=30.85 E-value=1.4e+02 Score=23.11 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred hHHHHHhhhcCCChHHHHHHHHHHHHhcCCCCCCCC
Q 043950 419 GFKKIEGLKSHDNNGIREKAVKILETYWCGRVVGPQ 454 (458)
Q Consensus 419 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 454 (458)
.++.+.....+.++++++.|..+..+|...++..|.
T Consensus 95 FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~~~Vkp~ 130 (135)
T PF13981_consen 95 FIQLIAQAMTHGDDEIKQKARDLYKKYLQLPRVKPY 130 (135)
T ss_dssp HHHHHHHHCC-TSCCCHHHHHHHHHHHCCSTTTHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcChhhhhh
Confidence 467777778888999999999999999999887654
No 413
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=30.72 E-value=4.7e+02 Score=24.72 Aligned_cols=47 Identities=19% Similarity=0.056 Sum_probs=35.4
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhh
Q 043950 99 SMNTNVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRN 145 (458)
Q Consensus 99 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 145 (458)
+...+..++...+-.|+.+..+.++.-|+..-.+|.++.+.-..+|.
T Consensus 167 ~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~ 213 (457)
T KOG2085|consen 167 PSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRP 213 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 44555667778899999999999999999888888888654333333
No 414
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.35 E-value=8.7e+02 Score=27.77 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=57.3
Q ss_pred HHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCC
Q 043950 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGL 321 (458)
Q Consensus 242 ~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~ 321 (458)
.++.+.++.++..+......+-...+...+ ..++..|+..+-++.+.++ ..|..+|..++..++..+..... +
T Consensus 442 ~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~q----qeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~~~l~~fa~--~ 514 (1426)
T PF14631_consen 442 SLLRSKEPSVREFGSHLYKYLFKEFDSYCQ----QEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNPSELQPFAT--F 514 (1426)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHHHSS-HHHH----HHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-HHHHHHTHH--H
T ss_pred HHHhCCCHHHHHHHHHHHHHHHhhccchhH----HHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccHHHHHHHHH--H
Confidence 456677888888877777666554443222 2367778888866624444 68889999998755555444322 3
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 322 IVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 322 ~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
+..+++.+.+=+..-.......++.++.
T Consensus 515 l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 515 LKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3344444444344434445666666654
No 415
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=30.29 E-value=7.8e+02 Score=27.19 Aligned_cols=70 Identities=24% Similarity=0.268 Sum_probs=42.0
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcc------------cccHHHHHHHHHHH
Q 043950 109 GAVPIFVKLLASPSDDVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNE------------HAKLSMLRIATWTL 176 (458)
Q Consensus 109 ~~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~------------~~~~~~~~~a~~~l 176 (458)
.++..++.+|++.+..++..+..+|+++-. ...+.+++ .+..++.-... .....++....+++
T Consensus 196 ~LFk~ivPlLks~~~~~r~AaVlaLG~~n~---~v~~~Lle--eL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl 270 (1120)
T PF14228_consen 196 ELFKLIVPLLKSESSSFRDAAVLALGSINL---NVYRTLLE--ELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVL 270 (1120)
T ss_pred HHHHHHhhhhccCcHHHHHHHHHhcCCCCH---HHHHHHHH--HHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHH
Confidence 356788889999999999999888887532 22222222 23333332210 11245777777787
Q ss_pred HHhhcCC
Q 043950 177 SKLCKGK 183 (458)
Q Consensus 177 ~~l~~~~ 183 (458)
..++..-
T Consensus 271 ~llAe~l 277 (1120)
T PF14228_consen 271 RLLAEFL 277 (1120)
T ss_pred HHHHhhc
Confidence 7776654
No 416
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=30.15 E-value=4.5e+02 Score=24.39 Aligned_cols=130 Identities=11% Similarity=0.090 Sum_probs=80.3
Q ss_pred HHHHHhCcHHHHHHHhCCC-CccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHH-hccCC----hhhHHHHHHHHH
Q 043950 229 QVVIEAGVCRRLVELLGHP-SPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLAL-LIHNH----KKSIKKVACWTI 302 (458)
Q Consensus 229 ~~~~~~~~i~~L~~ll~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~l-l~~~~----~~~v~~~a~~~l 302 (458)
+.+.+.+++..++++-..+ .+.++..++.++.++.....+. .+....+..++.++ ++... ...+..+-...+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 4466778888888887764 5678888898888887643322 22244567777777 43321 233555555555
Q ss_pred HHhhc---CCHHHHHHHHHcC--------------------------ChHHHHHHhccCChhhHHHHHHHHHHhhcCC--
Q 043950 303 SNITA---GNREQIQAVIDAG--------------------------LIVPLVNVLQDAEFDIKKEAALAIANATVRG-- 351 (458)
Q Consensus 303 ~nl~~---~~~~~~~~l~~~~--------------------------~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-- 351 (458)
..+|. .+|.....+.+.+ ++..|+..+..+ ..+-..|..++.-++...
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 55553 5666555555321 355666766665 667777777777776654
Q ss_pred CHHHHHHHHH
Q 043950 352 THEQIKYLVR 361 (458)
Q Consensus 352 ~~~~~~~l~~ 361 (458)
++....++.+
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555666666
No 417
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=29.55 E-value=1.7e+02 Score=26.22 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=43.9
Q ss_pred hhHhhccHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCc-------------cHHHHHHcCCHHHHHHhhcC
Q 043950 18 LQTKLEILPAMVAGVWSDDNSLQLEATTQFRILLSIERSP-------------RIEDVIQAGVVPRFVEFLMR 77 (458)
Q Consensus 18 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~~i~~L~~ll~~ 77 (458)
.....+-+..+++.|.+++...+..|+++|.-++.+.-.+ +...+.+.|+++.++.+|..
T Consensus 55 ~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 55 FDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455667889999999999999999999999988764211 13445566777777777654
No 418
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.39 E-value=4.4e+02 Score=24.02 Aligned_cols=178 Identities=13% Similarity=0.059 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHH-hhc---C-----CChHHHHHHHHHHHHhccCChhhHHHHHHhCcHH
Q 043950 168 MLRIATWTLSKLCKGKPQPPFDQVRPALPALAQ-LIH---L-----DDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCR 238 (458)
Q Consensus 168 ~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~-ll~---~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~ 238 (458)
+++..+..+.......++ ........+|.+.. .+. . .++++..-...++..+-..-.+....+.+. ++.
T Consensus 43 iKkeIL~Li~t~i~~~~~-~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-vf~ 120 (319)
T PF08767_consen 43 IKKEILKLIETFISKAED-PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-VFE 120 (319)
T ss_dssp HHHHHHHHHHHHHHT-S--HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-HHH
Confidence 444555555555544321 12234555665554 222 1 345665555555555554334444545543 677
Q ss_pred HHHHHhCCC---CccchhhHHHHHhHhhcCChhhHHHHH---hcCChHHHHHHhccCChhhHHHHHHHHHHHhhc----C
Q 043950 239 RLVELLGHP---SPSVLTPALWTVGNIVMGDDFQTQCII---NHGAVPCLLALLIHNHKKSIKKVACWTISNITA----G 308 (458)
Q Consensus 239 ~L~~ll~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~---~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~----~ 308 (458)
..+.++..+ -|+.+..-...+..+...+....-.+- -..+++.++-.++++ +.++...++.++..+.. .
T Consensus 121 ~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~-~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 121 CTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHT-NREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHhc
Confidence 777777663 356677766667666654322211110 013466677777888 88999999988888874 2
Q ss_pred CHHHHHHHHHcCChHHH---HHHhccC-ChhhHHHHHHHHHHhh
Q 043950 309 NREQIQAVIDAGLIVPL---VNVLQDA-EFDIKKEAALAIANAT 348 (458)
Q Consensus 309 ~~~~~~~l~~~~~~~~L---~~ll~~~-~~~~~~~a~~~L~~l~ 348 (458)
+++....+.+.-.++.+ +.++.+. +...-..-+..|.++.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 44555555554333333 3334333 3333333334444443
No 419
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.04 E-value=7.1e+02 Score=26.30 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCC-----CCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHH
Q 043950 208 EVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGH-----PSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCL 282 (458)
Q Consensus 208 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l 282 (458)
...+..+..+-.++.+.... +...++.+++...+ .++.....+...++.++..-.+.-.++ ...++.|
T Consensus 482 ~~tEaci~~~~sva~~~~~t-----~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~l--n~sl~~L 554 (982)
T KOG2022|consen 482 NRTEACIFQFQSVAEYLGET-----ESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYL--NPSLPLL 554 (982)
T ss_pred HHHHHHHHHHHHHHhhcCcc-----hhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCccc--CchHHHH
Confidence 34455555665555443322 22346777776644 356677777777777664222111111 3467778
Q ss_pred HHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHhhcCCC
Q 043950 283 LALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA--EFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 283 ~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~ 352 (458)
++-|..+ +.-.++...+.-+|...++......+ +++..+-+.+... ....+..+..+++.++..-.
T Consensus 555 ~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~ 622 (982)
T KOG2022|consen 555 FQGLHNS---KESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK 622 (982)
T ss_pred HHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc
Confidence 8888544 44556666688888766666555544 4666666666543 34567778888888876433
No 420
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=28.69 E-value=4e+02 Score=26.60 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=47.0
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHHhhc-CCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950 278 AVPCLLALLIHNHKKSIKKVACWTISNITA-GNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 278 ~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
++-.+..++..++...+|-..+..++.+.. ..++..+.-+-..+....-.+|.+++.-+...|+.+++.+++..+
T Consensus 480 v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 480 VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 455566666555466688888888888875 111211111111122233335678899999999999999998654
No 421
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=28.20 E-value=2.5e+02 Score=31.75 Aligned_cols=129 Identities=13% Similarity=0.084 Sum_probs=68.8
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHH
Q 043950 162 EHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLV 241 (458)
Q Consensus 162 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~ 241 (458)
.+.++.++..+......+..... ......++..|+..+-+++..-...++.+|..++.........+ +..+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 56777788888777777766531 22336677788777766666666788999999886544333221 12333344
Q ss_pred HHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHH
Q 043950 242 ELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKV 297 (458)
Q Consensus 242 ~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~ 297 (458)
..+.+=+..-.+....+++.++......... +...+.-.+-+.|.+. +...++.
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s~-i~del~ivIRKQLss~-~~~~K~~ 573 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSSS-IQDELHIVIRKQLSSS-NPKYKRI 573 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS---H-HHHHHHHHHHHHHT-S-SHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccchh-hHHHHHHHHHHhhcCC-cHHHHHH
Confidence 4444333333445577777776432221111 2223344455666666 6666653
No 422
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=28.12 E-value=2.9e+02 Score=21.53 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=40.9
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhc
Q 043950 281 CLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATV 349 (458)
Q Consensus 281 ~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 349 (458)
.+++-|... ...+++.|.++|-+ .+..+ .+.+.+++.+..++...|.+..+.+-.++.
T Consensus 12 ~~L~~L~aS-~qSi~kaa~fAlk~--~~~~e--------dL~~cIle~le~~~lN~R~nI~~fID~l~e 69 (139)
T PF12243_consen 12 QLLRRLNAS-QQSIQKAAQFALKN--RDMEE--------DLWSCILEQLEKENLNTRINIFYFIDSLCE 69 (139)
T ss_pred HHHHHcchh-HHHHHHHHHHHHHc--cccHH--------HHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 344555555 56778888888887 33222 366778888888888888888888877765
No 423
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=28.11 E-value=1.4e+02 Score=24.59 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=51.1
Q ss_pred HHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHH
Q 043950 238 RRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVI 317 (458)
Q Consensus 238 ~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~ 317 (458)
+.+.....+++.-+++.+..++...... ..... .+++.+-.++.++ +.-|+....|+|..++...++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 6777888888888888888777666543 11111 2344455555556 889999999999999987766555444
Q ss_pred H
Q 043950 318 D 318 (458)
Q Consensus 318 ~ 318 (458)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 3
No 424
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=26.98 E-value=5.3e+02 Score=24.20 Aligned_cols=214 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccC
Q 043950 210 LSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHN 289 (458)
Q Consensus 210 ~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~ 289 (458)
.+....+-..++...+.. +.+-+..++-..++ +...-++-|...+.+.-.+-++... ..++.-+++....
T Consensus 4 ie~ly~~~e~l~~a~dk~-q~v~~y~~il~~~k----~~~k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~ 73 (460)
T KOG2213|consen 4 IEKLYEFYEILSEATDKS-QHVDDYEGILKAVK----GTSKEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDD 73 (460)
T ss_pred HHHHHHHHHHHHhhchhh-hhHHHHHHHHHHhh----cchHHHHHHHHHHHHHHhhCchhhh-----HHHHhhhcccccc
Q ss_pred ChhhHHHHHHHHHHHhhcC-----CHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCC
Q 043950 290 HKKSIKKVACWTISNITAG-----NREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGC 364 (458)
Q Consensus 290 ~~~~v~~~a~~~l~nl~~~-----~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~ 364 (458)
+..+|+.|..-|--+|.+ ..+....+.+.+-+..|..-....|..+++.++..+..=+..-..+....=++...
T Consensus 74 -d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~i 152 (460)
T KOG2213|consen 74 -DVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHI 152 (460)
T ss_pred -chhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHH
Q ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHH
Q 043950 365 IKPLCDLLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILE 443 (458)
Q Consensus 365 l~~L~~ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~ 443 (458)
++.+-..+.+-.-+--...+..|.++-...... +.....+...+..+...+.. -+-.+++.-.+-...+.
T Consensus 153 v~eikkal~dVtgeef~lfm~~L~~lk~~~~k~--------~~a~lqeLa~~~e~~a~lda-f~~sD~d~VdRfisCl~ 222 (460)
T KOG2213|consen 153 VDEIKKALEDVTGEEFTLFMDILASLKSLQTKA--------GEARLQELAEEQEGLADLDA-FNVSDADYVDRFISCLL 222 (460)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhcccCCC--------CHHHHHHHHHHHhhhhccCc-ccCCChHHHHHHHHHHH
No 425
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=26.69 E-value=1.2e+02 Score=18.07 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=22.1
Q ss_pred cchHHHHHhhhcCCChHHHHHHHHHHHH
Q 043950 417 DEGFKKIEGLKSHDNNGIREKAVKILET 444 (458)
Q Consensus 417 ~~~~~~l~~l~~~~~~~v~~~a~~~l~~ 444 (458)
.|+-+.|..+....++..+..|..++..
T Consensus 16 e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 16 EGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3456677778888889999999998875
No 426
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=25.86 E-value=3.5e+02 Score=21.67 Aligned_cols=77 Identities=9% Similarity=0.136 Sum_probs=50.6
Q ss_pred HHHhCcHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHH-HhccCC-hhhHHHHHHHHHHHhhcC
Q 043950 231 VIEAGVCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLA-LLIHNH-KKSIKKVACWTISNITAG 308 (458)
Q Consensus 231 ~~~~~~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~-ll~~~~-~~~v~~~a~~~l~nl~~~ 308 (458)
+++..+.+.+.+.+.+++..+-..+++++..+........+.-++ -+++.++. ++.++. ....|..+..++..++..
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 556677888888888777888888999998887543322222221 23444444 666552 246777888999998864
No 427
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=25.29 E-value=1.3e+02 Score=29.05 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=51.2
Q ss_pred cHHHHHHHhCCCCccchhhHHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCChhhHHHHHHHHHHHhhc
Q 043950 236 VCRRLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNHKKSIKKVACWTISNITA 307 (458)
Q Consensus 236 ~i~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~v~~~a~~~l~nl~~ 307 (458)
....+-.+..+.+++++..+..++++++.+.......+-+..+-..++..+..+ .+++-+.+..++.-+..
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 344444555567899999999999999876554443333455666778888877 88888888888877753
No 428
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.97 E-value=3.1e+02 Score=21.92 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=42.9
Q ss_pred HHHHHhHhhcCChhhHHHHHhcCChHHHHHHhccCC--hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccC
Q 043950 255 ALWTVGNIVMGDDFQTQCIINHGAVPCLLALLIHNH--KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDA 332 (458)
Q Consensus 255 a~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~ 332 (458)
-..+|+.++...+... .+....+..++..=+ ..++...-..++.-+...++..++. ++-.|-+.+.+.
T Consensus 75 ~idlL~~lv~~~p~~v-----le~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s~~lrd~-----lilvLRKamf~r 144 (158)
T PF14676_consen 75 YIDLLSELVRKAPLTV-----LECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFSPSLRDS-----LILVLRKAMFSR 144 (158)
T ss_dssp HHHHHHHHHHH-HHHH-----S-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT-HHHHHH-----HHHHHHHHTT-S
T ss_pred HHHHHHHHHHHChHHH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHHHHHccc
Confidence 3567777776544221 123333333333210 3445555566666666655554444 445677778888
Q ss_pred ChhhHHHHHHHHH
Q 043950 333 EFDIKKEAALAIA 345 (458)
Q Consensus 333 ~~~~~~~a~~~L~ 345 (458)
+.+.|..|...+.
T Consensus 145 ~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 145 ELDARQMAVNGFL 157 (158)
T ss_dssp SHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc
Confidence 8888888877654
No 429
>PLN03205 ATR interacting protein; Provisional
Probab=24.79 E-value=2.5e+02 Score=26.22 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=66.1
Q ss_pred cHHHHHHHhCCCCccchhhHHHHHhHhhc---CChhhHHHHHhcCChHHH---HHHhccCChhhHHHHHHHHHHHhhcC-
Q 043950 236 VCRRLVELLGHPSPSVLTPALWTVGNIVM---GDDFQTQCIINHGAVPCL---LALLIHNHKKSIKKVACWTISNITAG- 308 (458)
Q Consensus 236 ~i~~L~~ll~~~~~~~~~~a~~~l~~l~~---~~~~~~~~~~~~~~~~~l---~~ll~~~~~~~v~~~a~~~l~nl~~~- 308 (458)
+++.|+.+-.-++..+...++++|..+.. ++......-++.+++..+ .+.-....+..||.+|..+..-+...
T Consensus 324 LlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 324 LVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 45666666666676677777776655532 233333333444444333 22222232667888887666555542
Q ss_pred -CHHHHHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHhh
Q 043950 309 -NREQIQAVIDAGLIVPLVNVLQDA-EFDIKKEAALAIANAT 348 (458)
Q Consensus 309 -~~~~~~~l~~~~~~~~L~~ll~~~-~~~~~~~a~~~L~~l~ 348 (458)
....+..+....+++.+-.+|+.+ ...|+++++..|.-+.
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL 445 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL 445 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 223445555666788888888765 5678888877665543
No 430
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=24.24 E-value=3.1e+02 Score=20.48 Aligned_cols=69 Identities=17% Similarity=0.117 Sum_probs=44.6
Q ss_pred hhhhHHHHHHhhc-CCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHHh-CCCCccc-hhhHHHHHhHhhcC
Q 043950 191 VRPALPALAQLIH-LDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVELL-GHPSPSV-LTPALWTVGNIVMG 265 (458)
Q Consensus 191 ~~~~l~~l~~ll~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~-~~~a~~~l~~l~~~ 265 (458)
...++|.+...+. +..++.+..+...++.++...+-. . .++..+++.+ ++....- ...++.++..++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~-----~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-D-----EVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-H-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 4567888898898 778899999999999998554421 1 2333333332 2222222 47788888888743
No 431
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.88 E-value=3.3e+02 Score=22.31 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=45.9
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCC
Q 043950 280 PCLLALLIHNHKKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGT 352 (458)
Q Consensus 280 ~~l~~ll~~~~~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 352 (458)
+.+.....++ +.-+++.+..++....... .... .+++.+-.++.+++..++....|+|..+.....
T Consensus 108 ~~~~~w~~s~-~~~~rR~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSE-NEWVRRAAIVLLLRLIKKE-TDFD-----LLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHHHHHHhc-ccHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 6788888888 8888888877777665430 1111 134444455566788899999999999988643
No 432
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=23.14 E-value=3.1e+02 Score=20.15 Aligned_cols=87 Identities=6% Similarity=0.009 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccCChhhHHHHHHhCcHHHHHHH
Q 043950 164 AKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYGTNDKIQVVIEAGVCRRLVEL 243 (458)
Q Consensus 164 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~L~~l 243 (458)
..+.+..-..|++.+.. ....++..+...++...+.-+..++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~---------~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRK---------HAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 33455556666666642 225566666677776666666677777777775544333333333334445444
Q ss_pred hCCCCccchhhHHHHH
Q 043950 244 LGHPSPSVLTPALWTV 259 (458)
Q Consensus 244 l~~~~~~~~~~a~~~l 259 (458)
....++.++......+
T Consensus 88 ~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 88 YEKVDEKTRKKLERLL 103 (114)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4444555554444433
No 433
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=22.62 E-value=12 Score=27.21 Aligned_cols=26 Identities=12% Similarity=-0.015 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHH
Q 043950 25 LPAMVAGVWSDDNSLQLEATTQFRIL 50 (458)
Q Consensus 25 i~~l~~~l~~~~~~~~~~a~~~L~~l 50 (458)
-..|+.+|+++++.++..|+..+..+
T Consensus 49 r~aLl~LL~hpn~~VRl~AA~~~L~~ 74 (106)
T PF09450_consen 49 RDALLPLLKHPNMQVRLWAAAHTLRY 74 (106)
T ss_dssp GGGGGGGGGSS-HHHHHHHHHTTTTT
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHh
Confidence 35678889999999999998776554
No 434
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=22.60 E-value=4.8e+02 Score=22.54 Aligned_cols=70 Identities=23% Similarity=0.184 Sum_probs=43.6
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhchhhcccCCCCCchhHHHHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 371 LLLCVDPKIVTVCLEGLENILKVGEAEKNTGSTIGDVNQYARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 371 ll~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
+++++++.|.+.++.+..+++...-..-.. + .........+ .+..+.+.++..+.++.++-.|.+.+++.
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~--~-~~~~~~W~~~--~~lK~~Il~~~~~~~~gvk~~~iKFle~v 70 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICV--N-PSDEQLWESM--NELKDRILSLWDSENPGVKLAAIKFLERV 70 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHH--HHHHHHHHHGGGSSSHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcC--C-chHHHHHHHH--HHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 467789999999988888877642221100 0 0111122222 23466777778888999999999888877
No 435
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=22.40 E-value=6.7e+02 Score=23.75 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhh
Q 043950 59 IEDVIQAGVVPRFVEFLMREDYPQLQYEAAWALTNIASGTSMNTNVVIDHGAVPIFVKLLASPS-DDVREQAVWALGNVA 137 (458)
Q Consensus 59 ~~~~~~~~~i~~L~~ll~~~~~~~i~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~a~~~L~~l~ 137 (458)
.+..++..++-.|+.++.+++ +..|..--.+|.++.+.....|..+. .++=..+.+++.... -.-....+.+|+.+.
T Consensus 170 aK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlgSiI 247 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILGSII 247 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHHHhc
Confidence 455667778889999998888 88888777777777764444443332 233344555554321 111122445555554
No 436
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.01 E-value=3.4e+02 Score=20.21 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=30.5
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043950 321 LIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVR 361 (458)
Q Consensus 321 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~ 361 (458)
+++.|++-|.+.+.+|...|+..|...+... ...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHH
Confidence 5778889999999999999999999998743 44444443
No 437
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=21.29 E-value=2.2e+02 Score=23.12 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHhhhCCHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhc
Q 043950 124 DVREQAVWALGNVAADSPGCRNLVLREEALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIH 203 (458)
Q Consensus 124 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~ 203 (458)
++|..|..++..+........+... .+..+...+ .+ +.+++.-+...+..++...|..-......+++.+-..+.
T Consensus 42 elRK~ayE~lytlLd~~~~~~~~~~---~~~~v~~GL-~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 42 ELRKAAYECLYTLLDTCLSRIDISE---FLDRVEAGL-KD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHSTCSSS-HHH---HHHHHHHTT-SS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHH---HHHHHHhhc-CC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Q ss_pred ------------CCChHHHHHHHHHHHHh
Q 043950 204 ------------LDDEEVLSDACWTLSYL 220 (458)
Q Consensus 204 ------------~~~~~~~~~~~~~l~~l 220 (458)
....+....+++++..+
T Consensus 117 ~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 117 KKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp ----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccccHHHHHHHHHHHHHHHHHH
No 438
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=21.19 E-value=2e+02 Score=17.25 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=20.7
Q ss_pred HHHHHhCCCCccchhhHHHHHhHhhcCChhhHHH
Q 043950 239 RLVELLGHPSPSVLTPALWTVGNIVMGDDFQTQC 272 (458)
Q Consensus 239 ~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 272 (458)
.++++|...++..+...+.+|+.+...+++..+.
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~ 44 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEKQK 44 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHh
Confidence 4667777777777787888888887777665443
No 439
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=20.85 E-value=3.6e+02 Score=20.08 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=43.6
Q ss_pred CHHHHHHHhcccccHHHHHHHHHHHHHhhcCCCCCChhhhhhhHHHHHHhhcCCChHHHHHHHHHHHHhccC
Q 043950 152 ALIPLLAQLNEHAKLSMLRIATWTLSKLCKGKPQPPFDQVRPALPALAQLIHLDDEEVLSDACWTLSYLSYG 223 (458)
Q Consensus 152 ~l~~l~~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 223 (458)
.+|.+...+..+..++.+..+.-.++.|+...+ -.......++..+..-....+. ...++.++..+++.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETV--QRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHc
Confidence 467777788557778898888888999987642 2333334444444443333333 46777778777743
No 440
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=20.76 E-value=3.5e+02 Score=19.87 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHhhcCCHHHHHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHhhcCCCHHHHHHHHHCCChHHHHh
Q 043950 291 KKSIKKVACWTISNITAGNREQIQAVIDAGLIVPLVNVLQDAEFDIKKEAALAIANATVRGTHEQIKYLVREGCIKPLCD 370 (458)
Q Consensus 291 ~~~v~~~a~~~l~nl~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~~~l~~L~~ 370 (458)
.+.+..-..|++.+.. ... .++..+.+.+....+.-+..+++.+-.++.+........+ .....+.+..
T Consensus 18 ~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~-~~~~~~~f~~ 86 (114)
T cd03562 18 QPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFF-SEFLVPLFLD 86 (114)
T ss_pred HHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHH-HHHHHHHHHH
Confidence 5566666677776652 111 2555667777777778888899999999887544443333 3333666666
Q ss_pred hccCCCHHHHHHHHHHH
Q 043950 371 LLLCVDPKIVTVCLEGL 387 (458)
Q Consensus 371 ll~~~~~~v~~~~~~~l 387 (458)
.....+++++.+...++
T Consensus 87 ~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 87 AYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 66667777776544443
No 441
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.26 E-value=2.1e+02 Score=28.47 Aligned_cols=68 Identities=15% Similarity=0.178 Sum_probs=54.1
Q ss_pred cCChhhHHHHHHHHHHhhcCCC---HHHHHHHHHCCChHHHHhhccCCCH-HHHHHHHHHHHHHHHhchhhc
Q 043950 331 DAEFDIKKEAALAIANATVRGT---HEQIKYLVREGCIKPLCDLLLCVDP-KIVTVCLEGLENILKVGEAEK 398 (458)
Q Consensus 331 ~~~~~~~~~a~~~L~~l~~~~~---~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~~~~~l~~l~~~~~~~~ 398 (458)
..+.++..+|++++..+...++ .....++++++.+-.+++++...+. .|..+.+..+..+++.-...+
T Consensus 38 E~Nr~llVEaLRsIaEILiwGDQnDssvFdFFlEkqml~yFl~Ilrq~st~~v~VQLLQTlnIlfeNirhEt 109 (864)
T KOG2219|consen 38 ENNRKLLVEALRAIAEILIWGDQNDSSVFDFFLEKQMLGYFLRILRQKSTVTVCVQLLQTLNILFENIRHET 109 (864)
T ss_pred ccchhHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHhhcCCceEeHHHHHHHHHHHHhccccc
Confidence 3477888999999999987664 4567788999999999999987765 677778888888888766544
No 442
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.06 E-value=2e+02 Score=22.48 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHhcchHHHHHhhhcCCChHHHHHHHHHHHHh
Q 043950 411 ARLVEEDEGFKKIEGLKSHDNNGIREKAVKILETY 445 (458)
Q Consensus 411 ~~~~~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~ 445 (458)
..........+.+..++.+++++||..|.+.+-+|
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Done!